RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780164|ref|YP_003064577.1| ATP-dependent Clp protease
adaptor protein ClpS [Candidatus Liberibacter asiaticus str. psy62]
         (138 letters)



>d1r6oc1 d.45.1.2 (C:20-106) Adaptor protein ClpS (YljA)
           {Escherichia coli [TaxId: 562]}
          Length = 87

 Score =  119 bits (301), Expect = 7e-29
 Identities = 44/85 (51%), Positives = 61/85 (71%)

Query: 53  KVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEI 112
            ++ P +Y+V+LVND+YTPMEFVI VLQ FF  D E A  +ML VH+QG   CGV+  E+
Sbjct: 2   ALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEV 61

Query: 113 AEMKVNQVMNYSRQHQYPLQCIMEQ 137
           AE KV  V  Y+R++++PL C +E+
Sbjct: 62  AETKVAMVNKYARENEHPLLCTLEK 86


>d1fx0b2 b.49.1.1 (B:19-97) F1 ATP synthase beta subunit, domain 1
          {Spinach (Spinacia oleracea), chloroplast [TaxId:
          3562]}
          Length = 79

 Score = 24.2 bits (53), Expect = 4.2
 Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 48 VRFSSKVRVPKLYRVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIML 95
          V F    ++P +Y  L+V    T  + +    +      +   + + +
Sbjct: 15 VAFPPG-KMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAM 61


>d1aoca_ g.17.1.5 (A:) Coagulogen {Japanese horseshoe crab
           (Tachypleus tridentatus) [TaxId: 6853]}
          Length = 175

 Score = 23.5 bits (50), Expect = 6.5
 Identities = 8/36 (22%), Positives = 14/36 (38%)

Query: 98  HHQGIGECGVYAYEIAEMKVNQVMNYSRQHQYPLQC 133
           HH    ECG Y       + ++  N+     +  +C
Sbjct: 53  HHPVFRECGKYECRTVRPEHSRCYNFPPFTHFKSEC 88


>d1h0ha1 b.52.2.2 (A:813-977) Tungsten containing formate
           dehydrogenase, large subunit {Desulfovibrio gigas
           [TaxId: 879]}
          Length = 165

 Score = 23.2 bits (49), Expect = 9.7
 Identities = 10/59 (16%), Positives = 17/59 (28%)

Query: 4   FDDGSMYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLYRV 62
           +  G M              F  M++     +GI   D  +   VR     +     R+
Sbjct: 49  WQTGLMTRNTPWLLEAEPQMFCEMSEELATLRGIKNGDKVILESVRGKLWAKAIITKRI 107


>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain
           {Caulobacter crescentus [TaxId: 155892]}
          Length = 139

 Score = 22.9 bits (48), Expect = 9.9
 Identities = 9/73 (12%), Positives = 23/73 (31%), Gaps = 1/73 (1%)

Query: 61  RVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQV 120
           R+L+V+D    +  +   L   +Y +  TA      +         +   ++    ++  
Sbjct: 3   RILVVDDIEANVRLLEAKLTAEYY-EVSTAMDGPTALAMAARDLPDIILLDVMMPGMDGF 61

Query: 121 MNYSRQHQYPLQC 133
               +    P   
Sbjct: 62  TVCRKLKDDPTTR 74


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.139    0.421 

Gapped
Lambda     K      H
   0.267   0.0642    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 511,025
Number of extensions: 21470
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 17
Length of query: 138
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 62
Effective length of database: 1,364,116
Effective search space: 84575192
Effective search space used: 84575192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (22.4 bits)