BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780164|ref|YP_003064577.1| ATP-dependent Clp protease
adaptor protein ClpS [Candidatus Liberibacter asiaticus str. psy62]
         (138 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780164|ref|YP_003064577.1| ATP-dependent Clp protease adaptor protein ClpS [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 138

 Score =  290 bits (741), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 138/138 (100%), Positives = 138/138 (100%)

Query: 1   MYLFDDGSMYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLY 60
           MYLFDDGSMYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLY
Sbjct: 1   MYLFDDGSMYHRVKRDGILALMSFIFMADSRMNKKGIAEFDNCLDSEVRFSSKVRVPKLY 60

Query: 61  RVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQV 120
           RVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQV
Sbjct: 61  RVLLVNDNYTPMEFVIHVLQNFFYKDHETAKCIMLKVHHQGIGECGVYAYEIAEMKVNQV 120

Query: 121 MNYSRQHQYPLQCIMEQK 138
           MNYSRQHQYPLQCIMEQK
Sbjct: 121 MNYSRQHQYPLQCIMEQK 138


>gi|254781037|ref|YP_003065450.1| porphobilinogen deaminase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 307

 Score = 21.9 bits (45), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 1   MYLFDDGSMYHRVKRDG 17
           + L  DG ++H V R+G
Sbjct: 264 IVLASDGKIFHEVSRNG 280


>gi|255764501|ref|YP_003064973.2| thiamine transporter membrane protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 535

 Score = 21.6 bits (44), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 60  YRVLLVNDNYTPMEFVIHVLQNFFYKDHE--TAKCIMLKVHHQGIGECGVYAYEIAEMKV 117
           Y +++V +    + + + +L+N  Y   E   A CI L++  +GI    +  ++  +  +
Sbjct: 406 YSLIIVTNALMAVPYAVKILENPMYDLAERYNALCISLQI--KGINRLYLIEFKALKRLM 463

Query: 118 NQVMNYS 124
            Q  ++S
Sbjct: 464 AQTFSFS 470


>gi|254780503|ref|YP_003064916.1| putative glutamine synthetase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 461

 Score = 21.6 bits (44), Expect = 5.3,   Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 36  GIAEFDNCLDSEVRFSSK 53
           GI EFD  +D   +FS K
Sbjct: 187 GINEFDEIIDDIWKFSEK 204


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.327    0.139    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,009
Number of Sequences: 1233
Number of extensions: 2990
Number of successful extensions: 8
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 5
length of query: 138
length of database: 328,796
effective HSP length: 66
effective length of query: 72
effective length of database: 247,418
effective search space: 17814096
effective search space used: 17814096
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 34 (17.7 bits)