Query gi|254780165|ref|YP_003064578.1| hypothetical protein CLIBASIA_00240 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 71 No_of_seqs 97 out of 99 Neff 3.8 Searched_HMMs 13730 Date Sun May 22 22:08:00 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780165.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1wxxa1 b.122.1.9 (A:1-64) Hyp 50.1 7.6 0.00055 18.4 3.5 51 1-53 1-51 (64) 2 d2fa8a1 c.47.1.23 (A:4-89) Hyp 41.2 11 0.00083 17.4 3.2 36 11-46 20-56 (86) 3 d1ej0a_ c.66.1.2 (A:) RNA meth 36.4 12 0.0009 17.2 2.8 34 8-41 140-173 (180) 4 d1r7ma2 d.95.2.1 (A:121-225) D 33.7 17 0.0013 16.4 3.2 28 4-31 46-73 (105) 5 d1c52a_ a.3.1.1 (A:) Cytochrom 32.3 13 0.00098 17.0 2.4 21 4-24 74-94 (131) 6 d1plqa1 d.131.1.2 (A:1-126) Pr 25.3 24 0.0018 15.5 5.6 43 27-70 78-122 (126) 7 d1u7ba1 d.131.1.2 (A:1-126) Pr 23.5 26 0.0019 15.3 5.3 43 27-70 78-122 (126) 8 d2do1a1 a.140.2.1 (A:5-46) Nuc 22.0 16 0.0012 16.5 1.4 13 7-19 27-39 (42) 9 d1kn0a_ d.50.1.3 (A:) The homo 21.8 26 0.0019 15.3 2.3 37 3-41 5-42 (184) 10 d1jz8a3 b.18.1.5 (A:13-219) be 20.0 31 0.0023 14.9 2.9 32 30-65 131-162 (207) No 1 >d1wxxa1 b.122.1.9 (A:1-64) Hypothetical protein TTHA1280, N-terminal domain {Thermus thermophilus [TaxId: 274]} Probab=50.14 E-value=7.6 Score=18.43 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=37.6 Q ss_pred CCEEECHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCEEEEEEEEEC Q ss_conf 92045899999999999986199639950799887278988897999998434 Q gi|254780165|r 1 MEVRMRADEIKKLERYLKRVFGSGIAVQSRENQSDSVEVLMNSEFIGLVYRND 53 (71) Q Consensus 1 m~i~M~~~Ei~klq~yLr~~F~~~i~v~~r~~~~DSaEV~i~~EfiGvi~~D~ 53 (71) |++..++..-++|+.---=.|.|+|. +.. .....++|+-++.|+|.-|-+- T Consensus 1 mkv~lk~~~~~rl~~gHPWVf~~~i~-~~~-~~~g~~~v~~~~~~lg~g~~np 51 (64) T d1wxxa1 1 MRIQVNAKGAARLLSRHLWVFRRDVV-SGP-ETPGLYPVYWGRRFLALALYNP 51 (64) T ss_dssp CCEEECHHHHHHHHTTCCEECGGGEE-ECC-SSCEEEEEEETTEEEEEEEECT T ss_pred CEEEECCCHHHHHHCCCCCCHHHHHH-CCC-CCCCEEEEEECCCEEEEEEECC T ss_conf 98999454244766489610122441-268-9998599998996899999899 No 2 >d2fa8a1 c.47.1.23 (A:4-89) Hypothetical protein Atu0228 {Agrobacterium tumefaciens [TaxId: 358]} Probab=41.18 E-value=11 Score=17.41 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=27.0 Q ss_pred HHHHHHHHHHCCCCE-EEEECCCCCCCEEEEECCEEE Q ss_conf 999999998619963-995079988727898889799 Q gi|254780165|r 11 KKLERYLKRVFGSGI-AVQSRENQSDSVEVLMNSEFI 46 (71) Q Consensus 11 ~klq~yLr~~F~~~i-~v~~r~~~~DSaEV~i~~Efi 46 (71) .-++..|..+|.+.| .|.-.|....+-||+++++-| T Consensus 20 ~wlaqeLl~tF~~~i~evsL~P~~~G~FeV~v~g~li 56 (86) T d2fa8a1 20 GWMAQEILQTFASDIGEVSLIPSTGGLFEITVDGTII 56 (86) T ss_dssp HHHHHHHHHHHGGGCSEEEEEEECTTCEEEEETTEEE T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCEEEEEEECCEEE T ss_conf 9999999986776676199998899179999899999 No 3 >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} Probab=36.40 E-value=12 Score=17.21 Aligned_cols=34 Identities=15% Similarity=0.240 Sum_probs=28.8 Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEE Q ss_conf 9999999999986199639950799887278988 Q gi|254780165|r 8 DEIKKLERYLKRVFGSGIAVQSRENQSDSVEVLM 41 (71) Q Consensus 8 ~Ei~klq~yLr~~F~~~i~v~~r~~~~DSaEV~i 41 (71) .+...+-..|++.|..=..++|......|.|+|+ T Consensus 140 ~~~~~l~~~l~~~F~~V~~~KP~aSR~~SsE~Yl 173 (180) T d1ej0a_ 140 EGFDEYLREIRSLFTKVKVRKPDSSRARSREVYI 173 (180) T ss_dssp TTHHHHHHHHHHHEEEEEEECCTTSCTTCCEEEE T ss_pred CCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEE T ss_conf 5689999999842398999888886657865999 No 4 >d1r7ma2 d.95.2.1 (A:121-225) DNA endonuclease I-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=33.66 E-value=17 Score=16.37 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=22.0 Q ss_pred EECHHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 4589999999999998619963995079 Q gi|254780165|r 4 RMRADEIKKLERYLKRVFGSGIAVQSRE 31 (71) Q Consensus 4 ~M~~~Ei~klq~yLr~~F~~~i~v~~r~ 31 (71) +.+.+|..+|+..|+.+||-+-.+.++. T Consensus 46 ~Ft~~e~~~L~~~L~~kf~l~~~i~~~~ 73 (105) T d1r7ma2 46 SFTFEEVEYLVKGLRNKFQLNCYVKINK 73 (105) T ss_dssp TSCHHHHHHHHHHHHHHHCCCEEEEEET T ss_pred CCCHHHHHHHHHHHHHHHCCEEEEEECC T ss_conf 9999999999999998739458999549 No 5 >d1c52a_ a.3.1.1 (A:) Cytochrome c552 {Thermus thermophilus [TaxId: 274]} Probab=32.25 E-value=13 Score=17.00 Aligned_cols=21 Identities=14% Similarity=0.427 Sum_probs=18.4 Q ss_pred EECHHHHHHHHHHHHHHCCCC Q ss_conf 458999999999999861996 Q gi|254780165|r 4 RMRADEIKKLERYLKRVFGSG 24 (71) Q Consensus 4 ~M~~~Ei~klq~yLr~~F~~~ 24 (71) .++..||..|=+|+|.+|||. T Consensus 74 ~LsD~eI~av~~YIr~~~gn~ 94 (131) T d1c52a_ 74 QLKDEEIAAVLNHIATAWGDA 94 (131) T ss_dssp TSCHHHHHHHHHHHHHTTSTG T ss_pred CCCHHHHHHHHHHHHHHCCCC T ss_conf 799999999999999873887 No 6 >d1plqa1 d.131.1.2 (A:1-126) Proliferating cell nuclear antigen (PCNA) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=25.27 E-value=24 Score=15.50 Aligned_cols=43 Identities=12% Similarity=0.375 Sum_probs=32.8 Q ss_pred EEECCCCCCCEEEEECC--EEEEEEEEECCCCCEEEEEEEEEEECC Q ss_conf 95079988727898889--799999843467825789984544113 Q gi|254780165|r 27 VQSRENQSDSVEVLMNS--EFIGLVYRNDDEEEISYHFDMSILEDD 70 (71) Q Consensus 27 v~~r~~~~DSaEV~i~~--EfiGvi~~D~eeGe~sY~f~MtILd~D 70 (71) +.++.+++|+..++.++ ..+.+.+.+.+.+ ....|+|..+|.| T Consensus 78 Ilk~~~~~d~l~l~~~~~~~~l~i~~~~~~~~-~~~~f~l~Lidid 122 (126) T d1plqa1 78 ILRCGNNTDTLTLIADNTPDSIILLFEDTKKD-RIAEYSLKLMDID 122 (126) T ss_dssp HTTCSTTTSEEEEEECSSCSEEEEEEECSSSS-CEEEEEEECBCCC T ss_pred HHHHCCCCCEEEEEEECCCCEEEEEEECCCCC-EEEEEEEEEECCC T ss_conf 98536899889999908998899999728887-8999999601347 No 7 >d1u7ba1 d.131.1.2 (A:1-126) Proliferating cell nuclear antigen (PCNA) {Human (Homo sapiens) [TaxId: 9606]} Probab=23.55 E-value=26 Score=15.31 Aligned_cols=43 Identities=14% Similarity=0.363 Sum_probs=31.8 Q ss_pred EEECCCCCCCEEEEECC--EEEEEEEEECCCCCEEEEEEEEEEECC Q ss_conf 95079988727898889--799999843467825789984544113 Q gi|254780165|r 27 VQSRENQSDSVEVLMNS--EFIGLVYRNDDEEEISYHFDMSILEDD 70 (71) Q Consensus 27 v~~r~~~~DSaEV~i~~--EfiGvi~~D~eeGe~sY~f~MtILd~D 70 (71) +.++-+++|+.+++..+ ..+.+.+...+.+ ....|++..+|.| T Consensus 78 Ilk~~~~~d~l~l~~~~~~d~l~i~~~~~~~~-~~~~f~l~Lidid 122 (126) T d1u7ba1 78 ILKCAGNEDIITLRAEDNADTLALVFEAPNQE-KVSDYEMKLMDLD 122 (126) T ss_dssp HHTTSCTTCEEEEEECTTCSEEEEEEECTTSS-CEEEEEEECCCCC T ss_pred HHHHCCCCCEEEEEEECCCCEEEEEEECCCCC-EEEEEEEECCCCC T ss_conf 99516899789999947998899999828987-8999999760467 No 8 >d2do1a1 a.140.2.1 (A:5-46) Nuclear protein hcc-1 {Human (Homo sapiens) [TaxId: 9606]} Probab=22.05 E-value=16 Score=16.47 Aligned_cols=13 Identities=38% Similarity=0.705 Sum_probs=10.0 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999998 Q gi|254780165|r 7 ADEIKKLERYLKR 19 (71) Q Consensus 7 ~~Ei~klq~yLr~ 19 (71) .+=|.|+|+||.. T Consensus 27 ~dli~rlqaylee 39 (42) T d2do1a1 27 QDLIHRLQAYLEE 39 (42) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 8899999999987 No 9 >d1kn0a_ d.50.1.3 (A:) The homologous-pairing domain of Rad52 recombinase {Human (Homo sapiens) [TaxId: 9606]} Probab=21.78 E-value=26 Score=15.34 Aligned_cols=37 Identities=14% Similarity=0.290 Sum_probs=25.9 Q ss_pred EEECHHHHHHHHHHHHHHCCCC-EEEEECCCCCCCEEEEE Q ss_conf 0458999999999999861996-39950799887278988 Q gi|254780165|r 3 VRMRADEIKKLERYLKRVFGSG-IAVQSRENQSDSVEVLM 41 (71) Q Consensus 3 i~M~~~Ei~klq~yLr~~F~~~-i~v~~r~~~~DSaEV~i 41 (71) ..-+..|++.||.-|.+.|++. |+-++.+ .-+.--|| T Consensus 5 ~~~~~~~~~~lq~~L~k~~~~e~Is~R~g~--gg~~~~YI 42 (184) T d1kn0a_ 5 CQYTAEEYQAIQKALRQRLGPEYISSRMAG--GGQKVCYI 42 (184) T ss_dssp CCCCHHHHHHHHHHTTCCBCTTTEEEEECS--SSCEEEEE T ss_pred CCCCHHHHHHHHHHHHCCCCHHHHEEEECC--CCCCEEEC T ss_conf 635899999999998451488894632379--98511304 No 10 >d1jz8a3 b.18.1.5 (A:13-219) beta-Galactosidase {Escherichia coli [TaxId: 562]} Probab=19.99 E-value=31 Score=14.88 Aligned_cols=32 Identities=16% Similarity=0.441 Sum_probs=23.5 Q ss_pred CCCCCCCEEEEECCEEEEEEEEECCCCCEEEEEEEE Q ss_conf 799887278988897999998434678257899845 Q gi|254780165|r 30 RENQSDSVEVLMNSEFIGLVYRNDDEEEISYHFDMS 65 (71) Q Consensus 30 r~~~~DSaEV~i~~EfiGvi~~D~eeGe~sY~f~Mt 65 (71) =...+..|+|+++++++|. -+.|=+.+.|.+| T Consensus 131 f~gv~~~a~V~vNG~~vG~----~~gg~~pf~fDiT 162 (207) T d1jz8a3 131 FDGVNSAFHLWCNGRWVGY----GQDSRLPSEFDLS 162 (207) T ss_dssp ESCEESEEEEEETTEEEEE----EECTTSCEEEECT T ss_pred ECCCCEEEEEEECCEEEEE----ECCCCCCEEEECH T ss_conf 6552557899999999987----5178767799283 Done!