RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780165|ref|YP_003064578.1| hypothetical protein
CLIBASIA_00240 [Candidatus Liberibacter asiaticus str. psy62]
         (71 letters)



>gnl|CDD|34395 COG4784, COG4784, Putative Zn-dependent protease [General
          function prediction only].
          Length = 479

 Score = 25.0 bits (54), Expect = 5.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 12 KLERYLKRVFGSGIAVQSRENQSDSVEVL 40
          KLER + R+ G+  AV     Q+  + +L
Sbjct: 65 KLERMVARIVGALTAVSENPQQTYRITIL 93


>gnl|CDD|37247 KOG2036, KOG2036, KOG2036, Predicted P-loop ATPase fused to an
           acetyltransferase [General function prediction only].
          Length = 1011

 Score = 24.1 bits (52), Expect = 9.5
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 6   RADEIKKLERYLKRVFGSGIAVQSRENQSDSVEVLMNSEFIGLVYRNDDEEEISYHFDMS 65
           R    KK+++ +KR            N  D   + ++S  I   Y  + E+ +   F M 
Sbjct: 68  RKKRAKKIKKAIKRG-------TLDPNSEDPFSLFISSTNIRYCYYKESEKILGNTFGMC 120

Query: 66  ILED 69
           IL+D
Sbjct: 121 ILQD 124


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.317    0.135    0.357 

Gapped
Lambda     K      H
   0.267   0.0731    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 856,667
Number of extensions: 34581
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 9
Length of query: 71
Length of database: 6,263,737
Length adjustment: 42
Effective length of query: 29
Effective length of database: 5,356,159
Effective search space: 155328611
Effective search space used: 155328611
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.4 bits)