BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780165|ref|YP_003064578.1| hypothetical protein
CLIBASIA_00240 [Candidatus Liberibacter asiaticus str. psy62]
         (71 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780165|ref|YP_003064578.1| hypothetical protein CLIBASIA_00240 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 71

 Score =  141 bits (356), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/71 (100%), Positives = 71/71 (100%)

Query: 1  MEVRMRADEIKKLERYLKRVFGSGIAVQSRENQSDSVEVLMNSEFIGLVYRNDDEEEISY 60
          MEVRMRADEIKKLERYLKRVFGSGIAVQSRENQSDSVEVLMNSEFIGLVYRNDDEEEISY
Sbjct: 1  MEVRMRADEIKKLERYLKRVFGSGIAVQSRENQSDSVEVLMNSEFIGLVYRNDDEEEISY 60

Query: 61 HFDMSILEDDL 71
          HFDMSILEDDL
Sbjct: 61 HFDMSILEDDL 71


>gi|254780332|ref|YP_003064745.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 504

 Score = 23.5 bits (49), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 12  KLERYLKRVFGSG--IAVQSRENQSDSVEVLMNSEFIGLVYRNDDEEEISYHFD 63
           K +  LKRV G    I  + R   + +V +   +EF      +D   +   HFD
Sbjct: 449 KWQEDLKRVKGIADIIIAKQRHGPTGTVTLAFQAEFTRFSALSDSSYQTGEHFD 502


>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 597

 Score = 20.8 bits (42), Expect = 5.1,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 9   EIKKLERYLKRVFGSGIAVQS 29
           EI +LE+Y+ +   S I+V +
Sbjct: 239 EINRLEKYISKYKESAISVAT 259


>gi|254780451|ref|YP_003064864.1| aconitate hydratase [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 896

 Score = 19.6 bits (39), Expect = 9.4,   Method: Composition-based stats.
 Identities = 6/15 (40%), Positives = 10/15 (66%)

Query: 55 EEEISYHFDMSILED 69
          E E+SY F   +++D
Sbjct: 79 ESEVSYRFSRVLMQD 93


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.135    0.357 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,793
Number of Sequences: 1233
Number of extensions: 1376
Number of successful extensions: 6
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 71
length of database: 328,796
effective HSP length: 42
effective length of query: 29
effective length of database: 277,010
effective search space:  8033290
effective search space used:  8033290
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.7 bits)
S2: 31 (16.5 bits)