HHsearch alignment for GI: 254780166 and conserved domain: COG1770
>COG1770 PtrB Protease II [Amino acid transport and metabolism].
Probab=97.55 E-value=0.0016 Score=40.10 Aligned_cols=220 Identities=19% Similarity=0.164 Sum_probs=117.0
Q ss_pred CEEEEEECCCCEEEE----EEE--CCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHCCCEEEEE-CCCCCCCCC----
Q ss_conf 407999349949999----996--48998789999878-888001221799999998689899996-476554222----
Q gi|254780166|r 4 EVKFFRSWRKYQFAF----YDV--GDKDAPTILLIHGL-ASSVQTNWLFSGWIQLLCDQGFRVIAF-DNLGHGKSD---- 71 (261)
Q Consensus 4 ~~~~~~~~dG~~l~y----~~~--g~~~~~~vv~iHG~-~~~~~~~~~~~~~~~~l~~~g~~vi~~-D~~G~G~S~---- 71 (261)
T Consensus 420 ~riwa~a~dgv~VPVSLvyrkd~~~~g~~p~lLygYGaYG~s~~p--~Fs~~~lSLlDRGf-iyAIAHVRGGgelG~~WY 496 (682)
T COG1770 420 RRIWATADDGVQVPVSLVYRKDTKLDGSAPLLLYGYGAYGISMDP--SFSIARLSLLDRGF-VYAIAHVRGGGELGRAWY 496 (682)
T ss_pred EEEEEECCCCEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCC--CCCCCEEEEECCCE-EEEEEEEECCCCCCHHHH
T ss_conf 999887589808417999941566789985799995345655786--64412422001726-999999506643475788
Q ss_pred --CCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECC----CCCCCCCCHHHH
Q ss_conf --222222222122222222222222--222222234434443101333210235652389628----856331103569
Q gi|254780166|r 72 --KSYIENDYRLVFMAADAVSLLEHL--GISKVHVMGYSMGARIACSMVLFYPSYVRSVILGGV----GSVLYDSDVVDW 143 (261)
Q Consensus 72 --~~~~~~~~s~~~~~~di~~~i~~l--~~~~~~liGhS~Gg~ia~~~a~~~p~~v~~lvl~~~----~~~~~~~~~~~~ 143 (261)
T Consensus 497 e~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVDvltTMlD~slP-- 574 (682)
T COG1770 497 EDGKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTTMLDPSLP-- 574 (682)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHCHHHHHHEEECCCCCCHHHHHCCCCCC--
T ss_conf 734455333647889999999997176782415896357234899999861846543124327733312320387789--
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCC-CCEEEEEECCCCCCC---CHH
Q ss_conf 9999986311110000111000000003476654135677765410122001210035-760699847888788---079
Q gi|254780166|r 144 QSLIDSFLLPSIDEVQNPLGKKFRKFADLDPGNDLKALASCLSMIRKPFCQDDLYRID-VPVLIAVGSQDDLAG---SPQ 219 (261)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~-~P~l~i~G~~D~~~~---~~~ 219 (261)
T Consensus 575 ------LT~~E~~EWGNP~--------------d-~e~y~yi---kSYSPYdNV~a~~YP~ilv~~Gl~D~rV~YwEpAK 630 (682)
T COG1770 575 ------LTVTEWDEWGNPL--------------D-PEYYDYI---KSYSPYDNVEAQPYPAILVTTGLNDPRVQYWEPAK 630 (682)
T ss_pred ------CCCCCHHHHCCCC--------------C-HHHHHHH---HHCCCHHCCCCCCCCCEEEECCCCCCCCCCCHHHH
T ss_conf ------8852034307977--------------7-8899998---62593321455788836897034578614520789
Q ss_pred HHHHH---CCCCEEEEE---CCCCCCCCCCCHHHHHHHH
Q ss_conf 99996---799799998---8887384348489999999
Q gi|254780166|r 220 ELMSF---IPSSQYLNI---CRRDHLLAVGDKQFKQGVV 252 (261)
Q Consensus 220 ~l~~~---~p~~~~~~i---~~~gH~~~~e~p~~~~~i~ 252 (261)
T Consensus 631 WvAkLR~~~td~~plLlkt~M~aGHgG~SgRf~~lee~A 669 (682)
T COG1770 631 WVAKLRELKTDGNPLLLKTNMDAGHGGASGRFQRLEEIA 669 (682)
T ss_pred HHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHH
T ss_conf 999876413689717998413465787787368899999