HHsearch alignment for GI: 254780166 and conserved domain: COG1770

>COG1770 PtrB Protease II [Amino acid transport and metabolism].
Probab=97.55  E-value=0.0016  Score=40.10  Aligned_cols=220  Identities=19%  Similarity=0.164  Sum_probs=117.0

Q ss_pred             CEEEEEECCCCEEEE----EEE--CCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHCCCEEEEE-CCCCCCCCC----
Q ss_conf             407999349949999----996--48998789999878-888001221799999998689899996-476554222----
Q gi|254780166|r    4 EVKFFRSWRKYQFAF----YDV--GDKDAPTILLIHGL-ASSVQTNWLFSGWIQLLCDQGFRVIAF-DNLGHGKSD----   71 (261)
Q Consensus         4 ~~~~~~~~dG~~l~y----~~~--g~~~~~~vv~iHG~-~~~~~~~~~~~~~~~~l~~~g~~vi~~-D~~G~G~S~----   71 (261)
T Consensus       420 ~riwa~a~dgv~VPVSLvyrkd~~~~g~~p~lLygYGaYG~s~~p--~Fs~~~lSLlDRGf-iyAIAHVRGGgelG~~WY  496 (682)
T COG1770         420 RRIWATADDGVQVPVSLVYRKDTKLDGSAPLLLYGYGAYGISMDP--SFSIARLSLLDRGF-VYAIAHVRGGGELGRAWY  496 (682)
T ss_pred             EEEEEECCCCEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCC--CCCCCEEEEECCCE-EEEEEEEECCCCCCHHHH
T ss_conf             999887589808417999941566789985799995345655786--64412422001726-999999506643475788


Q ss_pred             --CCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECC----CCCCCCCCHHHH
Q ss_conf             --222222222122222222222222--222222234434443101333210235652389628----856331103569
Q gi|254780166|r   72 --KSYIENDYRLVFMAADAVSLLEHL--GISKVHVMGYSMGARIACSMVLFYPSYVRSVILGGV----GSVLYDSDVVDW  143 (261)
Q Consensus        72 --~~~~~~~~s~~~~~~di~~~i~~l--~~~~~~liGhS~Gg~ia~~~a~~~p~~v~~lvl~~~----~~~~~~~~~~~~  143 (261)
T Consensus       497 e~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVDvltTMlD~slP--  574 (682)
T COG1770         497 EDGKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTTMLDPSLP--  574 (682)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHCHHHHHHEEECCCCCCHHHHHCCCCCC--
T ss_conf             734455333647889999999997176782415896357234899999861846543124327733312320387789--


Q ss_pred             HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCC-CCEEEEEECCCCCCC---CHH
Q ss_conf             9999986311110000111000000003476654135677765410122001210035-760699847888788---079
Q gi|254780166|r  144 QSLIDSFLLPSIDEVQNPLGKKFRKFADLDPGNDLKALASCLSMIRKPFCQDDLYRID-VPVLIAVGSQDDLAG---SPQ  219 (261)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~-~P~l~i~G~~D~~~~---~~~  219 (261)
T Consensus       575 ------LT~~E~~EWGNP~--------------d-~e~y~yi---kSYSPYdNV~a~~YP~ilv~~Gl~D~rV~YwEpAK  630 (682)
T COG1770         575 ------LTVTEWDEWGNPL--------------D-PEYYDYI---KSYSPYDNVEAQPYPAILVTTGLNDPRVQYWEPAK  630 (682)
T ss_pred             ------CCCCCHHHHCCCC--------------C-HHHHHHH---HHCCCHHCCCCCCCCCEEEECCCCCCCCCCCHHHH
T ss_conf             ------8852034307977--------------7-8899998---62593321455788836897034578614520789


Q ss_pred             HHHHH---CCCCEEEEE---CCCCCCCCCCCHHHHHHHH
Q ss_conf             99996---799799998---8887384348489999999
Q gi|254780166|r  220 ELMSF---IPSSQYLNI---CRRDHLLAVGDKQFKQGVV  252 (261)
Q Consensus       220 ~l~~~---~p~~~~~~i---~~~gH~~~~e~p~~~~~i~  252 (261)
T Consensus       631 WvAkLR~~~td~~plLlkt~M~aGHgG~SgRf~~lee~A  669 (682)
T COG1770         631 WVAKLRELKTDGNPLLLKTNMDAGHGGASGRFQRLEEIA  669 (682)
T ss_pred             HHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHH
T ss_conf             999876413689717998413465787787368899999