HHsearch alignment for GI: 254780166 and conserved domain: TIGR01836
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit; InterPro: IPR010125 This entry represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (IPR010123 from INTERPRO) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerise short-chain-length hydroxyalkanoates.; GO: 0008415 acyltransferase activity, 0042619 poly-hydroxybutyrate biosynthetic process.
Probab=99.39 E-value=3.1e-13 Score=97.78 Aligned_cols=241 Identities=15% Similarity=0.198 Sum_probs=141.7
Q ss_pred EEEECCCCEEE-EEEE-CC-C-CCCEEEEECCC-----CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 99934994999-9996-48-9-98789999878-----888001221799999998689899996476554222222222
Q gi|254780166|r 7 FFRSWRKYQFA-FYDV-GD-K-DAPTILLIHGL-----ASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYIEN 77 (261)
Q Consensus 7 ~~~~~dG~~l~-y~~~-g~-~-~~~~vv~iHG~-----~~~~~~~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~~~ 77 (261)
T Consensus 48 vvy~~~K~~LYRy~p~~~~tP~~k~PlLIVYALvNrPYm~DLQ---~drSlv~~LL~~G~DVYLiDW---GyP~--~~D~ 119 (367)
T TIGR01836 48 VVYREDKVVLYRYTPVKDNTPLHKTPLLIVYALVNRPYMLDLQ---EDRSLVRGLLERGQDVYLIDW---GYPD--RADR 119 (367)
T ss_pred EEEECCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEC---CCCHHHHHHHHCCCCEEEEEC---CCCC--HHHH
T ss_conf 5754287788642586678887456512354200645102324---881688888856984899606---8987--3331
Q ss_pred CCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC-CCCEEEECCCCCCCCCCHH----------
Q ss_conf 222122222222-----222222222222234434443101333210235-6523896288563311035----------
Q gi|254780166|r 78 DYRLVFMAADAV-----SLLEHLGISKVHVMGYSMGARIACSMVLFYPSY-VRSVILGGVGSVLYDSDVV---------- 141 (261)
Q Consensus 78 ~~s~~~~~~di~-----~~i~~l~~~~~~liGhS~Gg~ia~~~a~~~p~~-v~~lvl~~~~~~~~~~~~~---------- 141 (261)
T Consensus 120 ~ltLdDY~~~YI~~cV~~i~~~~~~d~i~lLG~CqGGTfsL~yAaL~~~kPiKNLvtMv~PVDF~~p~~~l~~~~GCtlG 199 (367)
T TIGR01836 120 YLTLDDYVNGYIDKCVDYICRTSKLDQISLLGICQGGTFSLCYAALYPDKPIKNLVTMVTPVDFETPGNLLSNWDGCTLG 199 (367)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCHHHHHCCCCEEC
T ss_conf 14046667677899999998650789610431431047899999725047832217872662565873376541673100
Q ss_pred ----HHHHHHHHHHCCCCCHH-------HHHHHHH-------------------H---CCCCCCCCCCCHHHHHHHHHHH
Q ss_conf ----69999998631111000-------0111000-------------------0---0000347665413567776541
Q gi|254780166|r 142 ----DWQSLIDSFLLPSIDEV-------QNPLGKK-------------------F---RKFADLDPGNDLKALASCLSMI 188 (261)
Q Consensus 142 ----~~~~~~~~~~~~~~~~~-------~~~~~~~-------------------~---~~~~~~~~~~~~~~~~~~~~~~ 188 (261)
T Consensus 200 a~~~DiDl~VdtmG-NiP~elln~~flmLKPf~l~~qKY~~L~d~~~D~~~v~nFlRMEKWifDsPd~AGEafRQf~kdF 278 (367)
T TIGR01836 200 ARHVDIDLAVDTMG-NIPGELLNLTFLMLKPFSLGYQKYVNLVDILEDESKVENFLRMEKWIFDSPDQAGEAFRQFVKDF 278 (367)
T ss_pred HHHCCHHHHHHHCC-CCCHHHHHHHHHHCCCHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 11212556775206-87677886575521511206897301021026858986265552232178883213589999999
Q ss_pred CCCC-----------CHHHHHCCCCCEEEEEECCCCCCCCH--HHHHHHCCC-CEEEE--ECCCCCCCCCC----CHHHH
Q ss_conf 0122-----------00121003576069984788878807--999996799-79999--88887384348----48999
Q gi|254780166|r 189 RKPF-----------CQDDLYRIDVPVLIAVGSQDDLAGSP--QELMSFIPS-SQYLN--ICRRDHLLAVG----DKQFK 248 (261)
Q Consensus 189 ~~~~-----------~~~~l~~i~~P~l~i~G~~D~~~~~~--~~l~~~~p~-~~~~~--i~~~gH~~~~e----~p~~~ 248 (261)
T Consensus 279 YQ~N~li~G~~~iGg~~vdL~Ni~~PvLNiyA~~DHLV~P~~S~aL~~~v~sn~Dyt~~~F~~-GHiG~yvSgkaQkev~ 357 (367)
T TIGR01836 279 YQQNGLINGEVEIGGRKVDLKNIKMPVLNIYAERDHLVPPDASKALNDLVSSNEDYTELSFPG-GHIGIYVSGKAQKEVP 357 (367)
T ss_pred HHHCCCEECEEEECCEEECCEECCCCHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCEECCCCC-CEEEEEECCEEEECCC
T ss_conf 871661424079865453212256551256433477555169997456754336621004798-4389997785331368
Q ss_pred HHHHHHHHH
Q ss_conf 999999875
Q gi|254780166|r 249 QGVVNFYAN 257 (261)
Q Consensus 249 ~~i~~Fl~~ 257 (261)
T Consensus 358 P~Ig~WL~~ 366 (367)
T TIGR01836 358 PAIGKWLQE 366 (367)
T ss_pred HHHHHHHHC
T ss_conf 268888513