HHsearch alignment for GI: 254780166 and conserved domain: TIGR01838
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I; InterPro: IPR010963 This entry represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerises hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of the cell.; GO: 0008415 acyltransferase activity, 0042619 poly-hydroxybutyrate biosynthetic process, 0005737 cytoplasm.
Probab=98.61 E-value=8.4e-08 Score=65.47 Aligned_cols=212 Identities=15% Similarity=0.147 Sum_probs=117.7
Q ss_pred CCCEEEEECCCC-----CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCC
Q ss_conf 987899998788-----880012217999999986898999964765542222222222221222222-----2222222
Q gi|254780166|r 25 DAPTILLIHGLA-----SSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYIENDYRLVFMAAD-----AVSLLEH 94 (261)
Q Consensus 25 ~~~~vv~iHG~~-----~~~~~~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~~~~~s~~~~~~d-----i~~~i~~ 94 (261)
T Consensus 187 ~~tPlLiVPP~INKyYILDLr---P~NSlvrWlv~QG~TVF~~SWrNPd~~~-----A~~tfdDY~~~G~~~Al~~v~~i 258 (541)
T TIGR01838 187 HKTPLLIVPPFINKYYILDLR---PENSLVRWLVEQGHTVFLISWRNPDAEQ-----ADLTFDDYVRDGVIAALEVVEEI 258 (541)
T ss_pred CCCEEEEECCCCCCCEECCCC---CCHHHHHHHHHCCCCEEEEEECCCCHHH-----HHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 430258737873311201678---6535899999549938998600627564-----53674789999999999999861
Q ss_pred CCCCCCCCCCCCCCCCCHHH----HHHHC-CCCCCCEEEECCCCCC----------CCCCHHHHHHHHHHHHCCCCCHHH
Q ss_conf 22222222344344431013----33210-2356523896288563----------311035699999986311110000
Q gi|254780166|r 95 LGISKVHVMGYSMGARIACS----MVLFY-PSYVRSVILGGVGSVL----------YDSDVVDWQSLIDSFLLPSIDEVQ 159 (261)
Q Consensus 95 l~~~~~~liGhS~Gg~ia~~----~a~~~-p~~v~~lvl~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 159 (261)
T Consensus 259 tGe~~~N~~GYCIGGT~Ls~alA~lAArg~~~ri~SaTffTTllDF~~~G~l~~F~~E~~v~~iE~~~~~~GGP-~~~l~ 337 (541)
T TIGR01838 259 TGEKQVNAVGYCIGGTLLSTALAYLAARGEKKRIKSATFFTTLLDFSDPGELGVFVDEEIVSAIERQNNQKGGP-IAYLD 337 (541)
T ss_pred CCCEEEEEEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHCCCCCCEEECCHHHHHHHHHHCCCCCC-EEEEC
T ss_conf 55406504541044789999999999617896124588999984310278531123808999999984137895-67506
Q ss_pred -HHHHHHHCC-----------CCCCCCCCCH--------------------HHHHHHH-H--------HHCCCCCHHHHH
Q ss_conf -111000000-----------0034766541--------------------3567776-5--------410122001210
Q gi|254780166|r 160 -NPLGKKFRK-----------FADLDPGNDL--------------------KALASCL-S--------MIRKPFCQDDLY 198 (261)
Q Consensus 160 -~~~~~~~~~-----------~~~~~~~~~~--------------------~~~~~~~-~--------~~~~~~~~~~l~ 198 (261)
T Consensus 338 G~~la~TFSlLR~NdL~WnY~vdnYLKG~~P~pFDLLfWN~DsTN~Pg~~h~~yLR~lYl~N~L~~~g~l~~~G~~lDL~ 417 (541)
T TIGR01838 338 GRSLAVTFSLLRENDLIWNYYVDNYLKGKSPVPFDLLFWNSDSTNLPGKMHNFYLRNLYLQNELVSKGKLEVGGVRLDLS 417 (541)
T ss_pred CHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCEEEECC
T ss_conf 05688887312468702066304314677578600121155011004778989987530101111688548732462034
Q ss_pred CCCCCEEEEEECCCCCCCC--HHHHHHHCC-CCEEEEECCCCCCCC-CCCH
Q ss_conf 0357606998478887880--799999679-979999888873843-4848
Q gi|254780166|r 199 RIDVPVLIAVGSQDDLAGS--PQELMSFIP-SSQYLNICRRDHLLA-VGDK 245 (261)
Q Consensus 199 ~i~~P~l~i~G~~D~~~~~--~~~l~~~~p-~~~~~~i~~~gH~~~-~e~p 245 (261)
T Consensus 418 ~vk~P~y~~at~eDHIApW~~~y~G~~~lGsG~~rFvLgeSGHIAGvvNPP 468 (541)
T TIGR01838 418 KVKVPVYIIATKEDHIAPWQSAYRGAALLGSGEKRFVLGESGHIAGVVNPP 468 (541)
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCEEEEECCC
T ss_conf 243124576134443458279999998853898348852665050046788