HHsearch alignment for GI: 254780166 and conserved domain: pfam06057
>pfam06057 VirJ Bacterial virulence protein (VirJ). This family consists of several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localized to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium.
Probab=98.65 E-value=2.4e-07 Score=62.78 Aligned_cols=180 Identities=19% Similarity=0.147 Sum_probs=111.5
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCC
Q ss_conf 789999878888001221799999998689899996476554222222222222122222222222222----2222222
Q gi|254780166|r 27 PTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYIENDYRLVFMAADAVSLLEHL----GISKVHV 102 (261)
Q Consensus 27 ~~vv~iHG~~~~~~~~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~~~~~s~~~~~~di~~~i~~l----~~~~~~l 102 (261)
T Consensus 3 tlav~~SGDGGW~~---lD~~va~~L~~~GvpVvGvdSLrYFW~~k-------tP~q~a~Dl~~ii~~Y~~~w~~~~v~L 72 (192)
T pfam06057 3 TVAVFYSGDGGWRD---LDKEVGSALQKQGVPVVGVDSLRYFWSER-------TPEEVADDLDRIIDTYRKRWKVKNVVL 72 (192)
T ss_pred EEEEEEECCCCHHH---HHHHHHHHHHHCCCCEEEECHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 79999946887355---51999999997798365532688875659-------989999999999999999858965999
Q ss_pred CCCCCCCCCHHHHHHHCC----CCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 344344431013332102----3565238962885633110356999999863111100001110000000034766541
Q gi|254780166|r 103 MGYSMGARIACSMVLFYP----SYVRSVILGGVGSVLYDSDVVDWQSLIDSFLLPSIDEVQNPLGKKFRKFADLDPGNDL 178 (261)
Q Consensus 103 iGhS~Gg~ia~~~a~~~p----~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (261)
T Consensus 73 iGYSFGADvlP~~~n~LP~~~r~~v~~v~LL~~~~~adfe-----------------ihv~~wlg~~-----~------- 123 (192)
T pfam06057 73 IGYSFGADVLPAAYNRLPPATKQRVRQVSLLALGKKADFE-----------------ISVEGWLGWD-----G------- 123 (192)
T ss_pred EEECCCCCHHHHHHHHCCHHHHHHHHEEEEECCCCCCEEE-----------------EEEHHHCCCC-----C-------
T ss_conf 9617872266654610999998541178884468853189-----------------9832301678-----8-------
Q ss_pred HHHHHHHHHHCCCCCHHHHHCCC-CCEEEEEECCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 35677765410122001210035-76069984788878807999996799799998888738434848999999999875
Q gi|254780166|r 179 KALASCLSMIRKPFCQDDLYRID-VPVLIAVGSQDDLAGSPQELMSFIPSSQYLNICRRDHLLAVGDKQFKQGVVNFYAN 257 (261)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~i~-~P~l~i~G~~D~~~~~~~~l~~~~p~~~~~~i~~~gH~~~~e~p~~~~~i~~Fl~~ 257 (261)
T Consensus 124 ---------~~~~~~~pei~~l~~~~v~CiyG~~E~d~~cp~---l~~~~~~~i~lpGg-HHFd~Dy~~la~~Il~~l~~ 190 (192)
T pfam06057 124 ---------EGKADPVPDLARLPPARVQCIYGQDEKDTACPS---LRQRGAEVVALPGG-HHFDGDYEALAKRILQGLRA 190 (192)
T ss_pred ---------CCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCC---CCCCCCEEEECCCC-CCCCCCHHHHHHHHHHHHHH
T ss_conf ---------775675467860998706999758878766856---56788779965898-77787599999999999983
Q ss_pred H
Q ss_conf 1
Q gi|254780166|r 258 E 258 (261)
Q Consensus 258 ~ 258 (261)
T Consensus 191 r 191 (192)
T pfam06057 191 R 191 (192)
T ss_pred C
T ss_conf 2