HHsearch alignment for GI: 254780166 and conserved domain: pfam07082
>pfam07082 DUF1350 Protein of unknown function (DUF1350). This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=96.54 E-value=0.024 Score=33.08 Aligned_cols=189 Identities=17% Similarity=0.226 Sum_probs=90.7
Q ss_pred EEEEECCC-CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC----CC----CCCCCCCCC
Q ss_conf 89999878-8880012217999999986898999964765542222222222221222222----22----222222222
Q gi|254780166|r 28 TILLIHGL-ASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYIENDYRLVFMAAD----AV----SLLEHLGIS 98 (261)
Q Consensus 28 ~vv~iHG~-~~~~~~~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~~~~~s~~~~~~d----i~----~~i~~l~~~ 98 (261)
T Consensus 19 vIhFiGGaf~ga~P-~vtYr~lLe~L~~~g~~ViAtpy~~-~----------fDH~~iA~~v~~~F~~~~~~L~~~~g~~ 86 (250)
T pfam07082 19 WIHFLGGAFVATAP-QLTYRWLLEHLGEAGYVVIATPFVN-T----------FDHGAIALSVLNKFEYALERLVHRGGYP 86 (250)
T ss_pred EEEEECCHHHCCCC-HHHHHHHHHHHHHCCCEEEEECCCC-C----------CCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99970766542682-8899999999987896899923678-9----------8779999999999999999999734998
Q ss_pred ----CCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf ----2222344344431013332102356523896288563311035699999986311110000111000000003476
Q gi|254780166|r 99 ----KVHVMGYSMGARIACSMVLFYPSYVRSVILGGVGSVLYDSDVVDWQSLIDSFLLPSIDEVQNPLGKKFRKFADLDP 174 (261)
Q Consensus 99 ----~~~liGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (261)
T Consensus 87 ~~~LPv~gvGHSlGckLhLLi~s~~~~~R~gniliSFNN~~A~~aIP----ll~~l--------~~~l~------~EF~P 148 (250)
T pfam07082 87 PAYLPIYGLGHSMGCKLHLLIGSLYDVERAGNILMAFNNYPAKQAIP----WMDNF--------GTALS------VEFTP 148 (250)
T ss_pred CCCCCEECCCCCCCCHHHEEECCCCCCCCCCCEEEECCCCCHHHCCC----HHHHH--------CCCCC------CCCCC
T ss_conf 44475231343323165413223467875531354306843564272----59871--------84335------74346
Q ss_pred CCCHHHHHHHHHHHCCCCCHHHHHCCCCCEEEEEECCCCCCCC---HHHHHHHCCC-CEEEEECCCCCCCCCCCH-----
Q ss_conf 6541356777654101220012100357606998478887880---7999996799-799998888738434848-----
Q gi|254780166|r 175 GNDLKALASCLSMIRKPFCQDDLYRIDVPVLIAVGSQDDLAGS---PQELMSFIPS-SQYLNICRRDHLLAVGDK----- 245 (261)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~~---~~~l~~~~p~-~~~~~i~~~gH~~~~e~p----- 245 (261)
T Consensus 149 --sP~ET~~l---i-----~~~Y-~-v~rnLLIkF~~D~IDqt~~L~~~L~~R~~~~~~~~~L~G-~HlTP~~q~l~wq~ 215 (250)
T pfam07082 149 --SPTETNHL---I-----QERY-P-VRRNLLIKFQNDDIDQTARLRSILRAKFGDMVTALKLPG-NHLTPLGQDLKWQT 215 (250)
T ss_pred --CHHHHHHH---H-----HHHC-C-CCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCC-CCCCCCCCCCCCCC
T ss_conf --87999999---9-----9705-8-866358883798854659999998632468626898789-87785667767555
Q ss_pred --HH--HHHHHHHHHHHC
Q ss_conf --99--999999987516
Q gi|254780166|r 246 --QF--KQGVVNFYANEL 259 (261)
Q Consensus 246 --~~--~~~i~~Fl~~~~ 259 (261)
T Consensus 216 g~~ftP~Dai~Q~~k~~~ 233 (250)
T pfam07082 216 GAEFSPLDALGQWIKQSL 233 (250)
T ss_pred CCCCCCHHHHHHHHHHHH
T ss_conf 885683488999999988