RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780166|ref|YP_003064579.1| hydrolase protein [Candidatus
Liberibacter asiaticus str. psy62]
(261 letters)
>gnl|CDD|163407 TIGR03695, menH_SHCHC,
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
synthase. This protein catalyzes the formation of
SHCHC, or (1 R,6
R)-2-succinyl-6-hydroxy-2,
4-cyclohexadiene-1-carboxylate, by elmination of
pyruvate from
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
carboxylate (SEPHCHC). Note that SHCHC synthase activity
previously was attributed to MenD, which in fact is
SEPHCHC synthase.
Length = 251
Score = 79.6 bits (197), Expect = 8e-16
Identities = 60/236 (25%), Positives = 90/236 (38%), Gaps = 39/236 (16%)
Query: 27 PTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYIENDYRLVFMAA 86
P ++ +HG S W + L FR +A D GHG S Y A
Sbjct: 2 PVLVFLHGFLGSGAD-WQA---LIELLGPHFRCLAIDLPGHGSSQSPDEIERYDFEEAAQ 57
Query: 87 DA-VSLLEHLGISKVHVMGYSMGARIACSMVLFYPSYVRSVILGGVGSVLYDSD--VVDW 143
D +LL+ LGI ++GYSMG RIA L YP V+ +IL L +
Sbjct: 58 DILATLLDQLGIEPFFLVGYSMGGRIALYYALQYPERVQGLILESGSPGLATEEERAARR 117
Query: 144 QS---LIDSFLLPSIDEV-----QNPLGKKFRKFADLDP-----------GNDLKALAS- 183
Q+ L F ++ Q PL F +L P N+ + LA
Sbjct: 118 QNDEQLAQRFEQEGLEAFLDDWYQQPL---FASQKNLPPEQRQALRAKRLANNPEGLAKM 174
Query: 184 --CLSMIRKPFCQDDLYRIDVPVLIAVGSQD----DLAGSPQELMSFIPSSQYLNI 233
+ ++P L + +PVL G +D +A +E+ +P+ + I
Sbjct: 175 LRATGLGKQPSLWPKLQALTIPVLYLCGEKDEKFVQIA---KEMQKLLPNLTLVII 227
>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit
dihydrolipoyllysine-residue acetyltransferase;
Provisional.
Length = 371
Score = 76.9 bits (190), Expect = 5e-15
Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 9/120 (7%)
Query: 17 AFYDVGDKDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYIE 76
+ +G+ D ++LIHG + NWLF+ L G VIA D GHG S K+
Sbjct: 122 RYLRLGEGDGTPVVLIHGFGGDL-NNWLFN--HAALAA-GRPVIALDLPGHGASSKAVGA 177
Query: 77 NDYRLVFMAADAVSLLEHLGISKVHVMGYSMGARIACSMVLFYPSYVRSVIL---GGVGS 133
L +AA ++ L+ LGI + H++G+SMG +A + P V S+ L G+G
Sbjct: 178 GS--LDELAAAVLAFLDALGIERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPAGLGP 235
>gnl|CDD|163354 TIGR03611, RutD, pyrimidine utilization protein D. This protein is
observed in operons extremely similar to that
characterized in E. coli K-12 responsible for the import
and catabolism of pyrimidines, primarily uracil. This
protein is a member of the hydrolase, alpha/beta fold
family defined by pfam00067.
Length = 257
Score = 65.1 bits (159), Expect = 2e-11
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 23 DKDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYIENDYRLV 82
D DAP ++L GL S ++ + +L Q F V+ +D+ G G+S + Y +
Sbjct: 10 DADAPVVVLSSGLGGSGS---YWAPQLDVL-TQRFHVVTYDHRGTGRSPGE-LPPGYSIA 64
Query: 83 FMAADAVSLLEHLGISKVHVMGYSMGARIACSMVLFYPSYVRSVIL 128
MA D + LL+ L I + H +G+++G I + L YP + S++L
Sbjct: 65 HMADDVLQLLDALNIERFHFVGHALGGLIGLQLALRYPERLLSLVL 110
>gnl|CDD|132100 TIGR03056, bchO_mg_che_rel, putative magnesium chelatase accessory
protein. Members of this family belong to the
alpha/beta fold family hydrolases (PFAM model
pfam00561). Members are found in bacterial genomes if
and only if they encoded for anoxygenic photosynthetic
systems similar to that of Rhodobacter capsulatus and
other alpha-Proteobacteria. Members often are encoded in
the same operon as subunits of the protoporphyrin IX
magnesium chelatase, and were once designated BchO. No
literature supports a role as an actual subunit of
magnesium chelatase, but an accessory role is possible,
as suggested by placement by its probable hydrolase
activity.
Length = 278
Score = 64.9 bits (158), Expect = 2e-11
Identities = 57/260 (21%), Positives = 98/260 (37%), Gaps = 47/260 (18%)
Query: 14 YQFAFYDVGDKDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKS 73
+ + D+G P +LL+HG +S + + + L FRV+A D GHG + ++
Sbjct: 16 FHWHVQDMGPTAGPLLLLLHGTGASTHS---WRDLMPPLARS-FRVVAPDLPGHGFT-RA 70
Query: 74 YIENDYRLVFMAADAVSLLEHLGISKVHVMGYSMGARIACSMVLFYPSYVRSVI------ 127
+ L MA D +L G+S V+G+S GA IA + L P R V+
Sbjct: 71 PFRFRFTLPSMAEDLSALCAAEGLSPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAAL 130
Query: 128 --LGGVGSVLYDSDVVDWQSLIDS--FLLPSIDEVQNPLGKKFRKFADL--DPGNDLKA- 180
G+ L+ + P + + ++ L D G+ L
Sbjct: 131 MPFEGMAGTLF--------PYMARVLACNPFTPPMMSRGAADQQRVERLIRDTGSLLDKA 182
Query: 181 -LASCLSMIRKPF----------------CQDDLYRIDVPVLIAVGSQDDLAGSP---QE 220
+ +IR P DL RI +P+ + G +D A P +
Sbjct: 183 GMTYYGRLIRSPAHVDGALSMMAQWDLAPLNRDLPRITIPLHLIAGEEDK-AVPPDESKR 241
Query: 221 LMSFIPSSQYLNICRRDHLL 240
+ +P++ + HL+
Sbjct: 242 AATRVPTATLHVVPGGGHLV 261
>gnl|CDD|131480 TIGR02427, protocat_pcaD, 3-oxoadipate enol-lactonase. Members of
this family are 3-oxoadipate enol-lactonase. Note that
the substrate is known as 3-oxoadipate enol-lactone,
2-oxo-2,3-dihydrofuran-5-acetate,
4,5-Dihydro-5-oxofuran-2-acetate, and
5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the
catalyzes the fourth step in the protocatechuate
degradation to beta-ketoadipate and then to succinyl-CoA
and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate,
and vanillate all can be converted in one step to
protocatechuate. This enzyme also acts in catechol
degradation. In genomes that catabolize both catechol
and protocatechuate, two forms of this enzyme may be
found. All members of the seed alignment for this model
were chosen from within protocatechuate degradation
operons of at least three genes of the pathway, from
genomes with the complete pathway through
beta-ketoadipate.
Length = 251
Score = 64.3 bits (157), Expect = 3e-11
Identities = 57/246 (23%), Positives = 92/246 (37%), Gaps = 51/246 (20%)
Query: 23 DKDAPTILLIHGLASSVQTNWLFSGW--IQLLCDQGFRVIAFDNLGHGKSDKSYIENDYR 80
AP ++ I+ L + W + FRV+ +D GHG SD E Y
Sbjct: 10 ADGAPVLVFINSLGTD------LRMWDPVLPALTPDFRVLRYDKRGHGLSD--APEGPYS 61
Query: 81 LVFMAADAVSLLEHLGISKVHVMGYSMGARIACSMVLFYPSYVRSVIL------------ 128
+ +A D ++LL+HLGI + G S+G IA + P VR+++L
Sbjct: 62 IEDLADDVLALLDHLGIERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPES 121
Query: 129 ----------GGVGSVLYDSDVVDWQSLIDSFLLPSIDEVQNPLGKKFRK-FADLDPGND 177
G+ ++ +D V + F + +R P
Sbjct: 122 WNARIAAVRAEGLAAL---ADAVLERWFTPGFREAHPARLDL-----YRNMLVRQPPD-- 171
Query: 178 LKALASCLSMIRKPFCQDDLYRIDVPVLIAVGSQDDLAGSP----QELMSFIPSSQYLNI 233
A C + IR +D L I VP L G QD +P +E+ +P +++ I
Sbjct: 172 --GYAGCCAAIRDADFRDRLGAIAVPTLCIAGDQD--GSTPPELVREIADLVPGARFAEI 227
Query: 234 CRRDHL 239
H+
Sbjct: 228 RGAGHI 233
>gnl|CDD|180292 PRK05855, PRK05855, short chain dehydrogenase; Validated.
Length = 582
Score = 57.7 bits (140), Expect = 3e-09
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 17 AFYDVGDKDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYIE 76
A Y+ GD D PT++L+HG + ++ G LL D+ FRV+A+D G G+S
Sbjct: 16 AVYEWGDPDRPTVVLVHGYPD---NHEVWDGVAPLLADR-FRVVAYDVRGAGRSSAPKRT 71
Query: 77 NDYRLVFMAADAVSLLEHLGISK-VHVMGYSMGA 109
Y L +A D ++++ + + VH++ + G+
Sbjct: 72 AAYTLARLADDFAAVIDAVSPDRPVHLLAHDWGS 105
>gnl|CDD|179147 PRK00870, PRK00870, haloalkane dehalogenase; Provisional.
Length = 302
Score = 54.6 bits (132), Expect = 3e-08
Identities = 38/156 (24%), Positives = 59/156 (37%), Gaps = 26/156 (16%)
Query: 17 AFYDVGDKDAPTILLIHGLASSVQTNW--LFSGWIQLLCDQGFRVIAFDNLGHGKSDKSY 74
+ D G D P +LL+HG + +W L+ I +L G RVIA D +G G+SDK
Sbjct: 37 HYVDEGPADGPPVLLLHG-----EPSWSYLYRKMIPILAAAGHRVIAPDLIGFGRSDKPT 91
Query: 75 IENDYRLVFMAADAVSLLEHLGISKVHVMGYSMGARIACSMVLFYPSYVRSVILGGVGSV 134
DY S E L ++ V ++ G I + +P +++ G
Sbjct: 92 RREDYTYARHVEWMRSWFEQLDLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTG-- 149
Query: 135 LYDSDVVDWQSLIDSFLLPSIDEVQNPLGKKFRKFA 170
LP+ D +R F+
Sbjct: 150 -----------------LPTGDGPMPDAFWAWRAFS 168
>gnl|CDD|178561 PLN02980, PLN02980, 2-oxoglutarate decarboxylase/ hydro-lyase/
magnesium ion binding / thiamin pyrophosphate binding.
Length = 1655
Score = 54.5 bits (131), Expect = 3e-08
Identities = 61/222 (27%), Positives = 96/222 (43%), Gaps = 35/222 (15%)
Query: 20 DVGDK-DAPTILLIHGLASSVQTNWLFSGWIQLL--CDQGFRVIAFDNLGHGKSDKS--Y 74
+VG + +L +HG + + WI ++ R I+ D GHG S
Sbjct: 1364 EVGQNAEGSVVLFLHGFLGTGED------WIPIMKAISGSARCISIDLPGHGGSKIQNHA 1417
Query: 75 IENDYRLVF---MAADAV-SLLEHLGISKVHVMGYSMGARIACSMVLFYPSYVR-SVILG 129
E + AD + L+EH+ KV ++GYSMGARIA M L + + +VI+
Sbjct: 1418 KETQTEPTLSVELVADLLYKLIEHITPGKVTLVGYSMGARIALYMALRFSDKIEGAVIIS 1477
Query: 130 GVGSVLYD--------SDVVDWQSLIDSFLLPSIDEVQN-PLGKKFR---KFADLDPG-- 175
G + + D + LID L ++ + L K R F +
Sbjct: 1478 GSPGLKDEVARKIRSAKDDSRARMLIDHGLEIFLENWYSGELWKSLRNHPHFNKIVASRL 1537
Query: 176 --NDLKALA---SCLSMIRKPFCQDDLYRIDVPVLIAVGSQD 212
D+ +LA S LS+ R+P +DL + D P+L+ VG +D
Sbjct: 1538 LHKDVPSLAKLLSDLSIGRQPSLWEDLKQCDTPLLLVVGEKD 1579
>gnl|CDD|162270 TIGR01250, pro_imino_pep_2, proline-specific peptidases, Bacillus
coagulans-type subfamily. This model describes a
subfamily of the alpha/beta fold family of hydrolases.
Characterized members include prolinases (Pro-Xaa
dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC
3.4.11.5), and a leucyl aminopeptidase.
Length = 288
Score = 52.0 bits (125), Expect = 1e-07
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 27 PTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDK-SYIENDYRLVFMA 85
+LL+HG +LL ++G VI +D LG G SD+ + + + +
Sbjct: 26 IKLLLLHGGPGMSHEYLE--NLRELLKEEGREVIMYDQLGCGYSDQPDDSDELWTIDYFV 83
Query: 86 ADAVSLLEHLGISKVHVMGYSMGARIACSMVLFYPSYVRSVILGG 130
+ + E LG+ K +++G+S G +A L Y +++ +I+
Sbjct: 84 DELEEVREKLGLDKFYLLGHSWGGMLAQEYALKYGQHLKGLIISS 128
>gnl|CDD|132386 TIGR03343, biphenyl_bphD, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate
hydrolase. Members of this family are
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or
HOPD hydrolase, the BphD protein of biphenyl
degradation. BphD acts on the product of ring
meta-cleavage by BphC. Many species carrying bphC and
bphD are capable of degrading polychlorinated biphenyls
as well as biphenyl itself.
Length = 282
Score = 51.5 bits (123), Expect = 2e-07
Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 18/119 (15%)
Query: 28 TILLIHGLASSVQTNWLFSGW------IQLLCDQGFRVIAFDNLGHGKSDKSYIENDYRL 81
++++HG GW I D G+RVI D+ G KSD ++ L
Sbjct: 32 AVIMLHGGGPGA------GGWSNYYRNIGPFVDAGYRVILKDSPGFNKSDAVVMDEQRGL 85
Query: 82 VFMAADAVS-LLEHLGISKVHVMGYSMGARIACSMVLFYPSYVRSVIL---GGVGSVLY 136
V A AV L++ L I K H++G SMG A + L YP + +IL GG+G L+
Sbjct: 86 V--NARAVKGLMDALDIEKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLF 142
>gnl|CDD|181553 PRK08775, PRK08775, homoserine O-acetyltransferase; Provisional.
Length = 343
Score = 47.5 bits (113), Expect = 4e-06
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 18/121 (14%)
Query: 21 VGDKDAPTILLIHGLASS--VQTNWLFS--GWIQLLCDQG-------FRVIAFDNLGHGK 69
+G AP + + G+++ V F GW + L G FR++AFD +G
Sbjct: 53 IGPAGAPVVFVAGGISAHRHVAATATFPEKGWWEGLVGSGRALDPARFRLLAFDFIGADG 112
Query: 70 SDKSYIENDYRLVFMAADAVS-LLEHLGISKVH-VMGYSMGARIACSMVLFYPSYVRSVI 127
S I+ ADA++ LL+ LGI+++H +GYS GA + +P+ VR+++
Sbjct: 113 SLDVPIDT-----ADQADAIALLLDALGIARLHAFVGYSYGALVGLQFASRHPARVRTLV 167
Query: 128 L 128
+
Sbjct: 168 V 168
>gnl|CDD|182637 PRK10673, PRK10673, acyl-CoA esterase; Provisional.
Length = 255
Score = 47.4 bits (113), Expect = 4e-06
Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 7/109 (6%)
Query: 29 ILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYIENDYRLVFMAADA 88
I+L+HGL S+ + + + +I D HG S + +Y MA D
Sbjct: 19 IVLVHGLFGSLDNLGVLARDLV----NDHDIIQVDMRNHGLSPRDP-VMNYPA--MAQDL 71
Query: 89 VSLLEHLGISKVHVMGYSMGARIACSMVLFYPSYVRSVILGGVGSVLYD 137
+ L+ L I K +G+SMG + ++ P + ++ + V Y
Sbjct: 72 LDTLDALQIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYH 120
>gnl|CDD|178482 PLN02894, PLN02894, hydrolase, alpha/beta fold family protein.
Length = 402
Score = 46.1 bits (109), Expect = 9e-06
Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 22/158 (13%)
Query: 4 EVKFFRSW----RKYQFAFYDVGDKDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRV 59
+V++FRS R +D +DAPT++++HG +S + F + L FRV
Sbjct: 80 KVRWFRSASNEPRFINTVTFD-SKEDAPTLVMVHGYGASQ--GFFFRNFDALA--SRFRV 134
Query: 60 IAFDNLGHGKSDKSYIENDYRLVFMAADAVSLLEHL-------GISKVHVMGYSMGARIA 112
IA D LG G S + D+ ++ +S ++G+S G +A
Sbjct: 135 IAIDQLGWGGSSRP----DFTCKSTEETEAWFIDSFEEWRKAKNLSNFILLGHSFGGYVA 190
Query: 113 CSMVLFYPSYVRSVILGGVGSVLYDSDVVDWQSLIDSF 150
L +P +V+ +IL VG + S+ D + F
Sbjct: 191 AKYALKHPEHVQHLIL--VGPAGFSSESDDKSEWLTKF 226
>gnl|CDD|152581 pfam12146, Hydrolase_4, Putative lysophospholipase. This domain
is found in bacteria and eukaryotes and is
approximately 110 amino acids in length. It is found in
association with pfam00561. Many members are annotated
as being lysophospholipases, and others as alpha-beta
hydrolase fold-containing proteins.
Length = 79
Score = 42.5 bits (101), Expect = 1e-04
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 16/72 (22%)
Query: 28 TILLIHGLASSVQTNWLFSGWIQLLCD----QGFRVIAFDNLGHGKSD--KSYIENDYRL 81
++L+HG SG L + QG+ V A+D+ GHG+S + ++ +
Sbjct: 18 VVVLVHGGGEH-------SGRYAELAEELAAQGYAVYAYDHRGHGRSPGKRGHVPSFDDY 70
Query: 82 VFMAADAVSLLE 93
V D + +E
Sbjct: 71 V---DDLDTFVE 79
>gnl|CDD|179554 PRK03204, PRK03204, haloalkane dehalogenase; Provisional.
Length = 286
Score = 41.0 bits (96), Expect = 3e-04
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 21 VGDKDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYIENDYR 80
+ + P ILL HG + ++L+ I L D+ FR +A D LG G S++ Y+
Sbjct: 29 IDEGTGPPILLCHGNPT---WSFLYRDIIVALRDR-FRCVAPDYLGFGLSERP-SGFGYQ 83
Query: 81 LVFMAADAVSLLEHLGISKVHVMGYSMGARIACSMVLFYPSYVRSVILG 129
+ A ++HLG+ + MG G I+ ++ + VR V+LG
Sbjct: 84 IDEHARVIGEFVDHLGLDRYLSMGQDWGGPISMAVAVERADRVRGVVLG 132
>gnl|CDD|180589 PRK06489, PRK06489, hypothetical protein; Provisional.
Length = 360
Score = 40.3 bits (95), Expect = 5e-04
Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 33/106 (31%)
Query: 27 PTILLIHGLASSVQT-------NWLFSGWIQLLCDQGFRVIAFDNLGHGKSDK------- 72
+L++HG S ++ LF G Q L + +I D +GHGKS K
Sbjct: 70 NAVLVLHGTGGSGKSFLSPTFAGELF-GPGQPLDASKYFIILPDGIGHGKSSKPSDGLRA 128
Query: 73 ---SYIEND-----YRLVFMAADAVSLLEHLGISKVH-VMGYSMGA 109
Y +D YRLV E LG+ + ++G SMG
Sbjct: 129 AFPRYDYDDMVEAQYRLV---------TEGLGVKHLRLILGTSMGG 165
>gnl|CDD|178633 PLN03084, PLN03084, alpha/beta hydrolase fold protein; Provisional.
Length = 383
Score = 40.2 bits (94), Expect = 6e-04
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 14 YQFAFYDVGDKDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKS 73
+++ + G + P +LLIHG S + + + +L + IAFD LG G SDK
Sbjct: 115 FRWFCVESGSNNNPPVLLIHGFPSQAYS---YRKVLPVLSKN-YHAIAFDWLGFGFSDKP 170
Query: 74 YIEN--DYRLVFMAADAVSLLEHLGISKVH--VMGY 105
+Y L + SL++ L KV V GY
Sbjct: 171 QPGYGFNYTLDEYVSSLESLIDELKSDKVSLVVQGY 206
>gnl|CDD|180684 PRK06765, PRK06765, homoserine O-acetyltransferase; Provisional.
Length = 389
Score = 38.9 bits (91), Expect = 0.002
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 90 SLLEHLGISKVH-VMGYSMGARIACSMVLFYPSYVRSVI 127
L++ LGI+++H VMG SMG A + YP V +I
Sbjct: 152 ELIKSLGIARLHAVMGPSMGGMQAQEWAVHYPHMVERMI 190
>gnl|CDD|182982 PRK11126, PRK11126,
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
synthase; Provisional.
Length = 242
Score = 38.3 bits (90), Expect = 0.002
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 22/95 (23%)
Query: 25 DAPTILLIHGLASSVQTNWLFSG--WIQLLCD-QGFRVIAFDNLGHGKSDKSYIENDYRL 81
P ++ +HGL L SG W + + + D GHG S + + +
Sbjct: 1 GLPWLVFLHGL--------LGSGQDWQPVGEALPDYPRLYIDLPGHGGS-AAISVDGF-- 49
Query: 82 VFMAADAVSL----LEHLGISKVHVMGYSMGARIA 112
AD L L+ I ++GYS+G RIA
Sbjct: 50 ----ADVSRLLSQTLQSYNILPYWLVGYSLGGRIA 80
>gnl|CDD|178190 PLN02578, PLN02578, hydrolase.
Length = 354
Score = 37.5 bits (87), Expect = 0.003
Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 8/121 (6%)
Query: 8 FRSWRKYQFAFYDVGDKDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGH 67
F +WR ++ Y V + P I+LIHG +S +W ++ I L + ++V A D LG
Sbjct: 70 FWTWRGHKI-HYVVQGEGLP-IVLIHGFGASA-FHWRYN--IPELAKK-YKVYALDLLGF 123
Query: 68 GKSDKSYIENDYRLVFMAADAVSLLEHLGISKVHVMGYSMGARIACSMVLFYPSYVRSVI 127
G SDK+ IE D +V+ A + E + V ++G S+G A S + YP V V
Sbjct: 124 GWSDKALIEYD-AMVWRDQVADFVKEVVKEPAV-LVGNSLGGFTALSTAVGYPELVAGVA 181
Query: 128 L 128
L
Sbjct: 182 L 182
>gnl|CDD|162335 TIGR01392, homoserO_Ac_trn, homoserine O-acetyltransferase. This
family describes homoserine-O-acetyltransferase, an
enzyme of methionine biosynthesis. This model has been
rebuilt to identify sequences more broadly, including a
number of sequences suggested to be homoserine
O-acetyltransferase based on proximity to other Met
biosynthesis genes.
Length = 351
Score = 37.3 bits (87), Expect = 0.004
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 91 LLEHLGISKVH-VMGYSMGARIACSMVLFYPSYVRSVIL 128
LL+HLGI ++ V+G SMG A + YP VR++++
Sbjct: 119 LLDHLGIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVV 157
>gnl|CDD|130316 TIGR01249, pro_imino_pep_1, proline iminopeptidase, Neisseria-type
subfamily. This model represents one of two related
families of proline iminopeptidase in the alpha/beta
fold hydrolase family. The fine specificities of the
various members, including both the range of short
peptides from which proline can be removed and whether
other amino acids such as alanine can be also removed,
may vary among members.
Length = 306
Score = 36.7 bits (85), Expect = 0.006
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 57 FRVIAFDNLGHGKS---DKSYIENDYRLVFMAADAVSLLEHLGISKVHVMGYSMGARIAC 113
+R++ FD G GKS + LV AD L E LGI V G S G+ +A
Sbjct: 54 YRIVLFDQRGCGKSTPHACLEENTTWDLV---ADIEKLREKLGIKNWLVFGGSWGSTLAL 110
Query: 114 SMVLFYPSYVRSVILGGV 131
+ +P V ++L G+
Sbjct: 111 AYAQTHPEVVTGLVLRGI 128
>gnl|CDD|178636 PLN03087, PLN03087, BODYGUARD 1 domain containing hydrolase;
Provisional.
Length = 481
Score = 36.7 bits (85), Expect = 0.007
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 28/123 (22%)
Query: 22 GDKDAPT---ILLIHGLASSVQTNWLFSG-WIQLL-------CDQGFRVIAFDNLGHGKS 70
KD +L IHG SS S W + L +R+ A D LG G+S
Sbjct: 194 QPKDNKAKEDVLFIHGFISS-------SAFWTETLFPNFSDAAKSTYRLFAVDLLGFGRS 246
Query: 71 DKSYIEND--YRL---VFMAADAVSLLEHLGISKVHVMGYSMGARIACSMVLFYPSYVRS 125
K D Y L + M +V LE + H++ +S+G +A ++ + +P V+S
Sbjct: 247 PKP---ADSLYTLREHLEMIERSV--LERYKVKSFHIVAHSLGCILALALAVKHPGAVKS 301
Query: 126 VIL 128
+ L
Sbjct: 302 LTL 304
>gnl|CDD|178916 PRK00175, metX, homoserine O-acetyltransferase; Provisional.
Length = 379
Score = 36.3 bits (85), Expect = 0.009
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 14/85 (16%)
Query: 57 FRVIAFDNLG--HGKSDKSYIEND----YRLVF-------MAADAVSLLEHLGISKVH-V 102
+ VI + LG G + S I D Y F LL+ LGI+++ V
Sbjct: 92 YFVICSNVLGGCKGSTGPSSINPDTGKPYGSDFPVITIRDWVRAQARLLDALGITRLAAV 151
Query: 103 MGYSMGARIACSMVLFYPSYVRSVI 127
+G SMG A + YP VRS +
Sbjct: 152 VGGSMGGMQALEWAIDYPDRVRSAL 176
>gnl|CDD|165193 PHA02857, PHA02857, monoglyceride lipase; Provisional.
Length = 276
Score = 35.2 bits (81), Expect = 0.018
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 56 GFRVIAFDNLGHGKSDKSYIENDYRLVFMAADAVSLLEHLGISK-------VHVMGYSMG 108
G V + D++GHG+S+ + D V++ +++H+ K V ++G+SMG
Sbjct: 52 GILVFSHDHIGHGRSNGEKMMIDDFGVYVR----DVVQHVVTIKSTYPGVPVFLLGHSMG 107
Query: 109 ARIACSMVLFYPSYVRSVIL 128
A I+ P+ ++IL
Sbjct: 108 ATISILAAYKNPNLFTAMIL 127
>gnl|CDD|130799 TIGR01738, bioH, putative pimeloyl-BioC--CoA transferase BioH.
This CoA-binding enzyme is required for the production
of pimeloyl-coenzyme A, the substrate of the BioF
protein early in the biosynthesis of biotin. Its exact
function is unknown, but is proposed in ref 2. This
enzyme belongs to the alpha/beta hydrolase fold family
(pfam model pfam00561). Members of this family are
restricted to the Proteobacteria.
Length = 245
Score = 33.6 bits (77), Expect = 0.057
Identities = 47/243 (19%), Positives = 82/243 (33%), Gaps = 51/243 (20%)
Query: 27 PTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSYIENDYRLVFMAA 86
++LIHG + + +F + L F + D GHG+S + + +A
Sbjct: 5 VHLVLIHGWGMNAE---VFRCLDEELSAH-FTLHLVDLPGHGRS------RGFGPLSLAD 54
Query: 87 DAVSLLEHLGISKVHVMGYSMGARIACSMVLFYPSYVRSVIL---------------GGV 131
A ++ + +G+S+G +A + +P VR+++ G
Sbjct: 55 AAEAIAAQAPDPAI-WLGWSLGGLVALHIAATHPDRVRALVTVASSPCFSAREDWPEGIK 113
Query: 132 GSVL---YDSDVVDWQSLIDSFLLPSIDEVQNPLGKKFRKFADLDPGNDLKALASC---- 184
VL D+Q I+ FL ++ + P A D + L +
Sbjct: 114 PDVLTGFQQQLSDDYQRTIERFL--ALQTLGTP-------TARQDARALKQTLLARPTPN 164
Query: 185 -------LSMIRKPFCQDDLYRIDVPVLIAVGSQDDL--AGSPQELMSFIPSSQYLNICR 235
L ++ + L I VP L G D L A L P S+ +
Sbjct: 165 VQVLQAGLEILATVDLRQPLQNISVPFLRLYGYLDGLVPAKVVPYLDKLAPHSELYIFAK 224
Query: 236 RDH 238
H
Sbjct: 225 AAH 227
>gnl|CDD|165939 PLN02298, PLN02298, hydrolase, alpha/beta fold family protein.
Length = 330
Score = 32.8 bits (75), Expect = 0.088
Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 27/117 (23%)
Query: 7 FFRSWRKYQFAFYDVGDKDAPT---ILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFD 63
F RSW +P I ++HG + + +W F L GF A D
Sbjct: 46 FTRSWLP---------SSSSPPRALIFMVHGYGNDI--SWTFQSTAIFLAQMGFACFALD 94
Query: 64 NLGHGKSD--KSYIENDYRLVFMAADAVSLL-------EHLGISKVHVMGYSMGARI 111
GHG+S+ ++Y+ N +V D +S E G+ + + G SMG I
Sbjct: 95 LEGHGRSEGLRAYVPNVDLVV---EDCLSFFNSVKQREEFQGLPRF-LYGESMGGAI 147
>gnl|CDD|162444 TIGR01607, PST-A, Plasmodium subtelomeric family (PST-A). These
genes are preferentially located in the subtelomeric
regions of the chromosomes of both P. falciparum and P.
yoelii.
Length = 332
Score = 31.7 bits (72), Expect = 0.18
Identities = 29/135 (21%), Positives = 46/135 (34%), Gaps = 53/135 (39%)
Query: 29 ILLIHGLASSVQTNWLF-----------------------SGWIQLLCDQGFRVIAFDNL 65
I+LIHGL S ++ +L WI+ G+ V D
Sbjct: 24 IVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGYSVYGLDLQ 83
Query: 66 GHGKSD----------------------------KSYIENDYRLVFMAADAVSLLEHLGI 97
GHG+SD +EN+ + + D V+ E+
Sbjct: 84 GHGESDGLQNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENR-- 141
Query: 98 SKVHVMGYSMGARIA 112
++++G SMG IA
Sbjct: 142 LPMYIIGLSMGGNIA 156
>gnl|CDD|178419 PLN02824, PLN02824, hydrolase, alpha/beta fold family protein.
Length = 294
Score = 31.6 bits (72), Expect = 0.22
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 10 SWRKYQFAFYDVGDKDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGK 69
W+ Y + G P ++L+HG + +W + +L RV A D LG+G
Sbjct: 14 RWKGYNIRYQRAGT-SGPALVLVHGFGGNAD-HWRKN--TPVLAKSH-RVYAIDLLGYGY 68
Query: 70 SDK 72
SDK
Sbjct: 69 SDK 71
>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1. This model
represents the full length, over a thousand amino acids,
of a multicopy family of eukaryotic proteins, many of
which are designated ubiquitin-activating enzyme E1.
Members have two copies of the ThiF family domain
(pfam00899), a repeat found in ubiquitin-activating
proteins (pfam02134), and other regions.
Length = 1008
Score = 31.0 bits (70), Expect = 0.34
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 13/108 (12%)
Query: 124 RSVILGGVGSV-LYDSDVVDWQSLIDSFLLPSIDEVQNPLGKKFRKFADLDPGNDLKALA 182
++++L GV SV L+D++ L +F L D +N +K A+L+P
Sbjct: 41 KNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELNP-------Y 93
Query: 183 SCLSMIRKPFCQDDLYRIDVPVL--IAVGSQ---DDLAGSPQELMSFI 225
+S PF ++ L + VL +++ Q +D S ++FI
Sbjct: 94 VHVSSSSVPFNEEFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFI 141
>gnl|CDD|178283 PLN02679, PLN02679, hydrolase, alpha/beta fold family protein.
Length = 360
Score = 30.6 bits (69), Expect = 0.45
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 11 WR-KYQFAFYDVGDKDA----PTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNL 65
W+ +Y + G + P +LL+HG +S+ +W + I +L + + V A D L
Sbjct: 68 WKGEYSINYLVKGSPEVTSSGPPVLLVHGFGASI-PHWRRN--IGVLA-KNYTVYAIDLL 123
Query: 66 GHGKSDK 72
G G SDK
Sbjct: 124 GFGASDK 130
>gnl|CDD|182555 PRK10566, PRK10566, esterase; Provisional.
Length = 249
Score = 30.3 bits (69), Expect = 0.45
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 22 GDKDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHG 68
D PT+ HG SS ++S + L GFRVI D HG
Sbjct: 23 RDTPLPTVFFYHGFTSSKL---VYSYFAVALAQAGFRVIMPDAPMHG 66
>gnl|CDD|179601 PRK03592, PRK03592, haloalkane dehalogenase; Provisional.
Length = 295
Score = 30.0 bits (68), Expect = 0.62
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 15 QFAFYDVGDKDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHGKSDKSY 74
+ A+ + G+ I+ +HG +S ++L+ I L G R +A D +G G SDK
Sbjct: 18 RMAYIETGE--GDPIVFLHGNPTS---SYLWRNIIPHLAGLG-RCLAPDLIGMGASDKPD 71
Query: 75 IENDYRLVFMAADAVSLLEHLGISKVHVMGYSMGARIACSMVLFYPSYVRSV 126
I DY A + + LG+ V ++G+ G+ + +P VR +
Sbjct: 72 I--DYTFADHARYLDAWFDALGLDDVVLVGHDWGSALGFDWAARHPDRVRGI 121
>gnl|CDD|163296 TIGR03502, lipase_Pla1_cef, extracellular lipase, Pla-1/cef family.
Members of this protein family are bacterial
lipoproteins largely from the Gammaproteobacteria.
Characterized members are expressed in extracellularly
and have esterase activity. Members include the lipase
Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell
elongation factor (cef) from Vibrio hollisae.
Length = 792
Score = 29.8 bits (67), Expect = 0.71
Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 40/120 (33%)
Query: 27 PTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGHG------KSDKSYIENDYR 80
P ++ HG+ + + F+G L G IA D+ HG + N
Sbjct: 450 PVVIYQHGITGAKENALAFAG---TLAAAGVATIAIDHPLHGARSFDANASGVNATNANV 506
Query: 81 LVFM-------AADAV--SLLEHLGI----------------------SKVHVMGYSMGA 109
L +M A D + S+L+ LG+ SKV +G+S+G
Sbjct: 507 LAYMNLASLLVARDNLRQSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGG 566
>gnl|CDD|184175 PRK13604, luxD, acyl transferase; Provisional.
Length = 307
Score = 29.8 bits (67), Expect = 0.79
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 15/92 (16%)
Query: 28 TILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLGH-GKSDKSYIENDYRLVFMAA 86
TIL+ G A + F+G + L GF VI +D+L H G S + E M+
Sbjct: 39 TILIASGFARRMDH---FAGLAEYLSSNGFHVIRYDSLHHVGLSSGTIDE-----FTMSI 90
Query: 87 DAVSL------LEHLGISKVHVMGYSMGARIA 112
SL L GI+ + ++ S+ ARIA
Sbjct: 91 GKNSLLTVVDWLNTRGINNLGLIAASLSARIA 122
>gnl|CDD|148552 pfam06996, DUF1305, Protein of unknown function (DUF1305). This
family consists of several hypothetical bacterial
proteins of around 300 residues in length. The function
of this family is unknown although one member from
Salmonella enterica is thought to be involved in
virulence.
Length = 304
Score = 29.5 bits (67), Expect = 0.95
Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 7 FFRSWRKYQFAF-YDVGDKDA 26
F+R+WRKY++A +D G D
Sbjct: 114 FYRAWRKYRYAVQFDRGADDR 134
>gnl|CDD|130895 TIGR01836, PHA_synth_III_C, poly(R)-hydroxyalkanoic acid synthase,
class III, PhaC subunit. This model represents the PhaC
subunit of a heterodimeric form of polyhydroxyalkanoic
acid (PHA) synthase. Excepting the PhaC of Bacillus
megaterium (which needs PhaR), all members require PhaE
(TIGR01834) for activity and are designated class III.
This enzyme builds ester polymers for carbon and energy
storage that accumulate in inclusions, and both this
enzyme and the depolymerase associate with the
inclusions. Class III enzymes polymerize
short-chain-length hydroxyalkanoates.
Length = 350
Score = 28.5 bits (64), Expect = 1.7
Identities = 11/80 (13%), Positives = 33/80 (41%)
Query: 48 WIQLLCDQGFRVIAFDNLGHGKSDKSYIENDYRLVFMAADAVSLLEHLGISKVHVMGYSM 107
++ L ++G V D ++D+ +DY ++ + + ++ ++G
Sbjct: 86 LVRGLLERGQDVYLIDWGYPDRADRYLTLDDYINGYIDKCVDYICRTSKLDQISLLGICQ 145
Query: 108 GARIACSMVLFYPSYVRSVI 127
G + YP +++++
Sbjct: 146 GGTFSLCYAALYPDKIKNLV 165
>gnl|CDD|183132 PRK11430, PRK11430, putative CoA-transferase; Provisional.
Length = 381
Score = 28.4 bits (63), Expect = 2.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 50 QLLCDQGFRVIAFDNLGHGKSDKSY 74
QLLC+ G RVI + GHG +++
Sbjct: 29 QLLCNMGARVIKVEPPGHGDDTRTF 53
>gnl|CDD|178258 PLN02652, PLN02652, hydrolase; alpha/beta fold family protein.
Length = 395
Score = 27.9 bits (62), Expect = 2.4
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Query: 7 FFRSWRKYQFAFYDVGDKDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVIAFDNLG 66
F RSW + +++IHGL + + + + + L GF V A D +G
Sbjct: 124 FCRSW-------APAAGEMRGILIIIHGLN---EHSGRYLHFAKQLTSCGFGVYAMDWIG 173
Query: 67 HGKSD 71
HG SD
Sbjct: 174 HGGSD 178
>gnl|CDD|150841 pfam10230, DUF2305, Uncharacterized conserved protein (DUF2305).
This family of proteins is conserved from plants to
humans. The function is unknown.
Length = 260
Score = 28.0 bits (63), Expect = 2.9
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 90 SLLEHLGISKVHVMGYSMGARIACSMVLFYPSYVRSVILGGVG 132
+ L K+ ++G+S+GA IA ++ R I V
Sbjct: 71 AFLPKKTDVKLILIGHSIGAYIALEVLKRLSLKFR--IKKCVL 111
>gnl|CDD|116024 pfam07402, Herpes_U26, Human herpesvirus U26 protein. This family
consists of several Human herpesvirus U26 proteins of
around 300 residues in length. The function of this
family is unknown.
Length = 293
Score = 27.5 bits (61), Expect = 3.2
Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 77 NDYRLVFMAADAVSLLEHLGISKVHVMGYS-MGAR-IACSMVLFYPSYVRSVILGG-VGS 133
D++++F++ A+ L + + +S + R I C +L +PS+ + G +
Sbjct: 62 GDFKIIFLSLLALKLPDEFFAVICICLFFSEIRLRAILCRCMLIFPSHSMASFFGILIAI 121
Query: 134 VLYDSDVVDWQSLIDSFLL 152
D D++ LI + L+
Sbjct: 122 FFKIQDFDDYRLLITAALI 140
>gnl|CDD|149787 pfam08840, BAAT_C, BAAT / Acyl-CoA thioester hydrolase C terminal.
This catalytic domain is found at the C terminal of
acyl-CoA thioester hydrolases and bile acid-CoA:amino
acid N-acetyltransferases (BAAT).
Length = 211
Score = 27.2 bits (61), Expect = 4.2
Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 19/120 (15%)
Query: 98 SKVHVMGYSMGARIACSMVLFYPSYVRSVILGGVGSVLYDSDVVDWQSLIDSFLLPSIDE 157
K+ ++G S G +A SM F + +V+ GS + + ++ L +++
Sbjct: 22 DKIGLLGISKGGELALSMASFLKQ-ISAVVSI-NGSAVVYGGPLLYKDNPLPPLGFGMEK 79
Query: 158 VQ-NPLGKK--FRKFADLDPGNDLKALASCLSMIRKPFCQDDLYRIDVPVLIAVGSQDDL 214
++ N G F LK ++I + R P L VG +DD
Sbjct: 80 IKVNKNGLLDIRDMFNLPLSKPALK------ALI-------PVERAKGPFLFVVG-EDDH 125
>gnl|CDD|181977 PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed.
Length = 478
Score = 26.8 bits (59), Expect = 5.7
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 74 YIENDYRLVFMAADAVSLLEHLGISKVHVMGYS 106
Y+E+DYR+ ++AA ++ + + V ++GY+
Sbjct: 389 YVEDDYRIDYLAAHIKAMRDAINEDGVELLGYT 421
>gnl|CDD|132274 TIGR03230, lipo_lipase, lipoprotein lipase. Members of this
protein family are lipoprotein lipase (EC 3.1.1.34), a
eukaryotic triacylglycerol lipase active in plasma and
similar to pancreatic and hepatic triacylglycerol
lipases (EC 3.1.1.3). It is also called clearing factor.
It cleaves chylomicron and VLDL triacylglycerols; it
also has phospholipase A-1 activity.
Length = 442
Score = 26.8 bits (59), Expect = 5.8
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 94 HLGISKVHVMGYSMGARIA 112
+ VH++GYS+GA +A
Sbjct: 115 NYPWDNVHLLGYSLGAHVA 133
>gnl|CDD|163135 TIGR03101, hydr2_PEP, hydrolase, ortholog 2, exosortase system type
1 associated. This group of proteins are members of the
alpha/beta hydrolase superfamily. These proteins are
generally found in genomes containing the
exosortase/PEP-CTERM protein expoert system,
specifically the type 1 variant of this system described
by the Genome Property GenProp0652. When found in this
context they are invariably present in the vicinity of a
second, relatively unrelated enzyme (ortholog 1,
TIGR03100) of the same superfamily.
Length = 266
Score = 26.7 bits (59), Expect = 6.2
Identities = 19/100 (19%), Positives = 29/100 (29%), Gaps = 27/100 (27%)
Query: 56 GFRVIAFDNLGHGKSDKSYIE-------NDYRLVFMAADAVSLLEHLGISKVHVMGYSMG 108
GF V+ D G G S + D A L G V + G +G
Sbjct: 56 GFGVLQIDLYGCGDSAGDFAAARWDVWKEDVAA------AYRWLIEQGHPPVTLWGLRLG 109
Query: 109 ARIACSMVLFYPSYVRSVILGGVGSVLYDSDVVDWQSLID 148
A +A + ++L WQ ++
Sbjct: 110 ALLALDAANPLAAKCNRLVL--------------WQPVVS 135
>gnl|CDD|147925 pfam06028, DUF915, Alpha/beta hydrolase of unknown function
(DUF915). This family consists of several bacterial
proteins of unknown function. Members of this family
have an alpha/beta hydrolase fold.
Length = 249
Score = 26.2 bits (58), Expect = 8.1
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 10/97 (10%)
Query: 91 LLEHLGISKVHVMGYSMGARIACSMVLFY---PSY--VRSVILGGVGSVLYDSDVVDW-Q 144
L + K + +G+SMG A + Y S + ++ +G D Q
Sbjct: 91 LKSNYNFKKFNAVGHSMGGLAATYYLEDYGNDKSLPQLNKLVT--IGGPFNGETNNDLGQ 148
Query: 145 SLIDSFLLPSIDEVQNPLGKKFRKFADLDPGNDLKAL 181
+L +L + + P+ +DL+ L
Sbjct: 149 TLA--IVLKDGPKNKTPMYDYLIDNYKKKIPSDLEVL 183
>gnl|CDD|178999 PRK00393, ribA, GTP cyclohydrolase II; Reviewed.
Length = 197
Score = 26.0 bits (58), Expect = 9.5
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 6/28 (21%)
Query: 76 ENDYRLVFMAADAVSLLEHLGISKVHVM 103
E DY +AAD +L+ LG+ KV ++
Sbjct: 127 ERDYT---LAAD---MLKALGVKKVRLL 148
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.325 0.141 0.429
Gapped
Lambda K H
0.267 0.0779 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,392,884
Number of extensions: 278991
Number of successful extensions: 680
Number of sequences better than 10.0: 1
Number of HSP's gapped: 651
Number of HSP's successfully gapped: 58
Length of query: 261
Length of database: 5,994,473
Length adjustment: 91
Effective length of query: 170
Effective length of database: 4,028,145
Effective search space: 684784650
Effective search space used: 684784650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.3 bits)