BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780166|ref|YP_003064579.1| hydrolase protein [Candidatus
Liberibacter asiaticus str. psy62]
         (261 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780166|ref|YP_003064579.1| hydrolase protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 261

 Score =  535 bits (1378), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 261/261 (100%), Positives = 261/261 (100%)

Query: 1   MMNEVKFFRSWRKYQFAFYDVGDKDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVI 60
           MMNEVKFFRSWRKYQFAFYDVGDKDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVI
Sbjct: 1   MMNEVKFFRSWRKYQFAFYDVGDKDAPTILLIHGLASSVQTNWLFSGWIQLLCDQGFRVI 60

Query: 61  AFDNLGHGKSDKSYIENDYRLVFMAADAVSLLEHLGISKVHVMGYSMGARIACSMVLFYP 120
           AFDNLGHGKSDKSYIENDYRLVFMAADAVSLLEHLGISKVHVMGYSMGARIACSMVLFYP
Sbjct: 61  AFDNLGHGKSDKSYIENDYRLVFMAADAVSLLEHLGISKVHVMGYSMGARIACSMVLFYP 120

Query: 121 SYVRSVILGGVGSVLYDSDVVDWQSLIDSFLLPSIDEVQNPLGKKFRKFADLDPGNDLKA 180
           SYVRSVILGGVGSVLYDSDVVDWQSLIDSFLLPSIDEVQNPLGKKFRKFADLDPGNDLKA
Sbjct: 121 SYVRSVILGGVGSVLYDSDVVDWQSLIDSFLLPSIDEVQNPLGKKFRKFADLDPGNDLKA 180

Query: 181 LASCLSMIRKPFCQDDLYRIDVPVLIAVGSQDDLAGSPQELMSFIPSSQYLNICRRDHLL 240
           LASCLSMIRKPFCQDDLYRIDVPVLIAVGSQDDLAGSPQELMSFIPSSQYLNICRRDHLL
Sbjct: 181 LASCLSMIRKPFCQDDLYRIDVPVLIAVGSQDDLAGSPQELMSFIPSSQYLNICRRDHLL 240

Query: 241 AVGDKQFKQGVVNFYANELRA 261
           AVGDKQFKQGVVNFYANELRA
Sbjct: 241 AVGDKQFKQGVVNFYANELRA 261


>gi|254780274|ref|YP_003064687.1| lysophospholipase protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 317

 Score = 27.3 bits (59), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 20/39 (51%)

Query: 93  EHLGISKVHVMGYSMGARIACSMVLFYPSYVRSVILGGV 131
           E  G + V + GYS+G  IA S +L YP     + L  +
Sbjct: 99  EKHGNTSVLLFGYSLGTIIALSTLLKYPQKFSGIALWNL 137


>537021.9.peg.410_1 
          Length = 952

 Score = 25.8 bits (55), Expect = 0.81,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 18/31 (58%)

Query: 74  YIENDYRLVFMAADAVSLLEHLGISKVHVMG 104
           +++NDY++  +  D   L +HL I  +  +G
Sbjct: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALG 425


>537021.9.peg.753_1 
          Length = 1033

 Score = 23.5 bits (49), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 132 GSVLYDSDVVDWQSLIDSFLLPSIDEVQNPLGKKFRKFAD 171
           G ++Y   V+    L+  + L   D ++  +GKK ++  D
Sbjct: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726


>gi|254781022|ref|YP_003065435.1| hypothetical protein CLIBASIA_04620 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 163

 Score = 22.3 bits (46), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 13/69 (18%)

Query: 125 SVILGGVGSVLYDSDVVDWQSLID----SFLLPSIDEVQNPLGKKFRKFADLDPGNDLKA 180
           SVIL    + L      +W +++     S LLP ID  ++ + K+F+          L  
Sbjct: 13  SVILAKKVNFLSSFTDAEWGTVVLGALLSCLLPDIDHPRSFISKRFKT---------LSL 63

Query: 181 LASCLSMIR 189
           L SC+S  R
Sbjct: 64  LTSCISSHR 72


>gi|254780455|ref|YP_003064868.1| nicotinate phosphoribosyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 418

 Score = 22.3 bits (46), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 15/36 (41%)

Query: 4   EVKFFRSWRKYQFAFYDVGDKDAPTILLIHGLASSV 39
           E KF      +Q   YD+  K    +L  HGL   V
Sbjct: 93  EPKFLSWLSDFQLPEYDLSHKKGQYVLNFHGLWKDV 128


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.325    0.141    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,731
Number of Sequences: 1233
Number of extensions: 7290
Number of successful extensions: 26
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 11
length of query: 261
length of database: 328,796
effective HSP length: 72
effective length of query: 189
effective length of database: 240,020
effective search space: 45363780
effective search space used: 45363780
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 37 (18.9 bits)