Query gi|254780167|ref|YP_003064580.1| hypothetical protein CLIBASIA_00250 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 78 No_of_seqs 101 out of 207 Neff 3.6 Searched_HMMs 13730 Date Sun May 22 22:49:39 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780167.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1v54f_ g.41.5.3 (F:) Cytochro 96.1 0.0034 2.5E-07 35.9 4.5 46 16-63 45-94 (98) 2 d1wjpa2 g.37.1.1 (A:43-66) Zin 90.5 0.025 1.8E-06 31.2 0.1 11 49-59 1-11 (26) 3 d1vq0a2 g.81.1.1 (A:231-287) H 71.9 0.86 6.3E-05 22.8 1.9 16 47-62 29-44 (57) 4 d1xjha_ g.81.1.1 (A:) HSP33, C 69.6 0.98 7.2E-05 22.4 1.8 15 48-62 37-51 (62) 5 d1vzya2 g.81.1.1 (A:234-290) H 68.4 1.1 7.9E-05 22.2 1.8 16 47-62 31-46 (57) 6 d2ct1a2 g.37.1.1 (A:8-43) Tran 67.9 0.44 3.2E-05 24.4 -0.3 21 45-65 5-25 (36) 7 d1srka_ g.37.1.1 (A:) Zinc fin 63.6 0.64 4.7E-05 23.4 -0.1 22 45-66 4-25 (35) 8 d1x6ea1 g.37.1.1 (A:8-40) Zinc 59.6 1 7.4E-05 22.4 0.3 22 45-66 4-25 (33) 9 d1a1ia2 g.37.1.1 (A:132-159) Z 58.8 0.82 6E-05 22.9 -0.3 20 46-65 1-20 (28) 10 d1ncsa_ g.37.1.1 (A:) SWI5 zin 54.4 2.3 0.00017 20.4 1.4 22 44-65 14-37 (47) 11 d1x6ha2 g.37.1.1 (A:8-43) Tran 51.8 1.3 9.8E-05 21.7 -0.1 21 45-65 5-25 (36) 12 d2adra1 g.37.1.1 (A:102-130) A 49.8 0.98 7.1E-05 22.5 -1.1 18 48-65 2-19 (29) 13 d1sp1a_ g.37.1.1 (A:) Transcri 45.2 1.7 0.00013 21.1 -0.4 17 49-65 3-19 (29) 14 d2fzcb2 g.41.7.1 (B:101-153) A 44.6 8.4 0.00061 17.4 3.0 28 35-62 21-49 (53) 15 d1bboa1 g.37.1.1 (A:1-28) Enha 42.9 3 0.00022 19.8 0.5 10 50-59 3-12 (28) 16 d2epsa1 g.37.1.1 (A:408-446) P 42.2 2.1 0.00015 20.6 -0.4 21 46-66 3-23 (39) 17 d2cota2 g.37.1.1 (A:7-44) Zinc 40.7 1.5 0.00011 21.5 -1.4 21 45-65 9-29 (38) 18 d2yrka1 g.37.1.4 (A:8-55) Zinc 39.4 2.8 0.00021 19.9 -0.1 16 49-64 7-22 (48) 19 d1pg5b2 g.41.7.1 (B:105-160) A 38.4 10 0.00075 16.9 2.6 27 33-61 21-48 (56) 20 d1ubdc3 g.37.1.1 (C:351-380) Y 36.2 2.9 0.00021 19.9 -0.4 18 48-65 2-21 (30) 21 d1p7aa_ g.37.1.1 (A:) Kruppel- 33.8 1.9 0.00014 20.9 -1.7 21 45-65 8-28 (37) 22 d1a1ia3 g.37.1.1 (A:160-187) Z 31.4 9.3 0.00068 17.1 1.5 18 46-63 1-18 (28) 23 d1x6ea2 g.37.1.1 (A:41-66) Zin 30.7 4.9 0.00036 18.6 -0.0 18 48-65 2-19 (26) 24 d1fqta_ b.33.1.1 (A:) Rieske-t 30.3 14 0.00098 16.2 2.2 46 18-63 30-75 (109) 25 d1ubdc4 g.37.1.1 (C:381-408) Y 30.0 4.9 0.00036 18.6 -0.1 18 49-66 3-22 (28) 26 d1zfda_ g.37.1.1 (A:) SWI5 zin 29.6 2.6 0.00019 20.1 -1.6 19 47-65 2-22 (32) 27 d2csha1 g.37.1.1 (A:8-60) Zinc 29.3 6.4 0.00047 18.0 0.4 21 45-65 27-47 (53) 28 d2glia3 g.37.1.1 (A:168-197) F 29.1 3.1 0.00023 19.7 -1.2 18 48-65 2-21 (30) 29 d1njqa_ g.37.1.3 (A:) SUPERMAN 28.1 10 0.00073 16.9 1.2 14 47-60 4-17 (37) 30 d2i3ha1 g.52.1.1 (A:78-167) BI 26.9 18 0.0013 15.5 2.3 20 40-59 36-55 (90) 31 d1a1ia1 g.37.1.1 (A:103-131) Z 26.5 5.1 0.00037 18.5 -0.5 18 48-65 2-21 (29) 32 d2epqa1 g.37.1.1 (A:380-411) P 25.2 5 0.00036 18.6 -0.8 17 47-63 2-18 (32) 33 d1dx8a_ g.41.5.1 (A:) Rubredox 24.3 19 0.0014 15.4 2.0 28 46-75 5-33 (70) 34 d1sp2a_ g.37.1.1 (A:) Transcri 24.3 4.5 0.00033 18.8 -1.2 18 49-66 3-22 (31) 35 d1jd5a_ g.52.1.1 (A:) BIR doma 24.2 22 0.0016 15.1 2.3 20 40-59 39-58 (105) 36 d2b1xa1 b.33.1.2 (A:1-162) Nap 23.5 15 0.0011 16.0 1.4 53 15-67 61-124 (162) 37 d2dlka2 g.37.1.1 (A:38-73) Zin 23.5 5.9 0.00043 18.2 -0.7 16 50-65 3-20 (36) 38 d3d9ta1 g.52.1.1 (A:260-346) 2 22.0 26 0.0019 14.7 2.3 20 40-59 30-49 (87) 39 d1i3oe_ g.52.1.1 (E:) BIR doma 20.3 20 0.0014 15.3 1.5 19 41-59 64-82 (111) No 1 >d1v54f_ g.41.5.3 (F:) Cytochrome c oxidase Subunit F {Cow (Bos taurus) [TaxId: 9913]} Probab=96.10 E-value=0.0034 Score=35.91 Aligned_cols=46 Identities=13% Similarity=0.319 Sum_probs=37.5 Q ss_pred CEEEE----CCEEEEEECCCCCCCCCEEEEECCCCCEEECCCCCCEEEECCC Q ss_conf 51994----6549999378998898679999599988998888821365467 Q gi|254780167|r 16 SRIKI----GVKKFMCAGTSPPLDHPHVFINMGEENEKHCPYCSTLYHFDSS 63 (78) Q Consensus 16 ~~I~v----~~~~v~CdGg~g~lgHP~V~l~l~~~~~v~C~YC~~~fv~~~~ 63 (78) .++.| +.|.|-|.| ++-.|..+|+.+.++....|+.||.-|++... T Consensus 45 ~P~lVpS~~~~RiVGC~~--~~D~h~v~W~~l~~g~p~RC~eCG~~fkL~~~ 94 (98) T d1v54f_ 45 DPNLVPSITNKRIVGCIC--EEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPH 94 (98) T ss_dssp SCEEEECSSSEEEEEECC--STTCSCCEEEEEESSSCEECTTTCCEEEEECC T ss_pred CCCEECCCCCCEEEEECC--CCCCCEEEEEEEECCCCCCCCCCCCEEEEEEC T ss_conf 986804779864886517--88776337889757998616778868998314 No 2 >d1wjpa2 g.37.1.1 (A:43-66) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]} Probab=90.49 E-value=0.025 Score=31.18 Aligned_cols=11 Identities=45% Similarity=1.201 Sum_probs=9.4 Q ss_pred EECCCCCCEEE Q ss_conf 99888882136 Q gi|254780167|r 49 KHCPYCSTLYH 59 (78) Q Consensus 49 v~C~YC~~~fv 59 (78) .+|||||+||- T Consensus 1 avcpycslrf~ 11 (26) T d1wjpa2 1 AVCPYCSLRFF 11 (26) T ss_dssp BCCTTTCCCBS T ss_pred CCCCCCEEEEC T ss_conf 97875022437 No 3 >d1vq0a2 g.81.1.1 (A:231-287) HSP33, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=71.92 E-value=0.86 Score=22.75 Aligned_cols=16 Identities=38% Similarity=0.864 Sum_probs=13.9 Q ss_pred CEEECCCCCCEEEECC Q ss_conf 8899888882136546 Q gi|254780167|r 47 NEKHCPYCSTLYHFDS 62 (78) Q Consensus 47 ~~v~C~YC~~~fv~~~ 62 (78) -.+.|.||+++|.++. T Consensus 29 iev~C~FC~~~Y~f~~ 44 (57) T d1vq0a2 29 GEVVCKWCNTRYVFSE 44 (57) T ss_dssp EEEECTTTCCEEEECH T ss_pred EEEEEECCCCEEEECH T ss_conf 6998478899887899 No 4 >d1xjha_ g.81.1.1 (A:) HSP33, C-terminal domain {Escherichia coli [TaxId: 562]} Probab=69.58 E-value=0.98 Score=22.45 Aligned_cols=15 Identities=40% Similarity=1.167 Sum_probs=13.3 Q ss_pred EEECCCCCCEEEECC Q ss_conf 899888882136546 Q gi|254780167|r 48 EKHCPYCSTLYHFDS 62 (78) Q Consensus 48 ~v~C~YC~~~fv~~~ 62 (78) .+.|.||++.|.++. T Consensus 37 ev~C~fC~~~Y~f~~ 51 (62) T d1xjha_ 37 DMHCDYCGNHYLFNA 51 (62) T ss_dssp EEECTTTCCEEEEEH T ss_pred EEEEECCCCEEEECH T ss_conf 998238799888899 No 5 >d1vzya2 g.81.1.1 (A:234-290) HSP33, C-terminal domain {Bacillus subtilis [TaxId: 1423]} Probab=68.36 E-value=1.1 Score=22.22 Aligned_cols=16 Identities=31% Similarity=0.825 Sum_probs=13.6 Q ss_pred CEEECCCCCCEEEECC Q ss_conf 8899888882136546 Q gi|254780167|r 47 NEKHCPYCSTLYHFDS 62 (78) Q Consensus 47 ~~v~C~YC~~~fv~~~ 62 (78) -.+.|.||++.|.++. T Consensus 31 iev~C~fC~~~Y~f~~ 46 (57) T d1vzya2 31 AEAVCHFCNEKYLFTK 46 (57) T ss_dssp EEEECTTTCCEEEEEH T ss_pred EEEEEECCCCEEEECH T ss_conf 8998018799887899 No 6 >d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Probab=67.94 E-value=0.44 Score=24.35 Aligned_cols=21 Identities=14% Similarity=0.425 Sum_probs=17.3 Q ss_pred CCCEEECCCCCCEEEECCCCC Q ss_conf 998899888882136546768 Q gi|254780167|r 45 EENEKHCPYCSTLYHFDSSLD 65 (78) Q Consensus 45 ~~~~v~C~YC~~~fv~~~~l~ 65 (78) .+.+-.|++|++.|...+.|+ T Consensus 5 gekP~~C~~C~k~F~~~~~L~ 25 (36) T d2ct1a2 5 GEKPYECYICHARFTQSGTMK 25 (36) T ss_dssp CCCSEECTTTCCEESCHHHHH T ss_pred CCCCEECCCCCCCCCCHHHHH T ss_conf 987976897764114208999 No 7 >d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Probab=63.64 E-value=0.64 Score=23.45 Aligned_cols=22 Identities=9% Similarity=0.268 Sum_probs=17.7 Q ss_pred CCCEEECCCCCCEEEECCCCCC Q ss_conf 9988998888821365467684 Q gi|254780167|r 45 EENEKHCPYCSTLYHFDSSLDS 66 (78) Q Consensus 45 ~~~~v~C~YC~~~fv~~~~l~~ 66 (78) .+.+-.|.+|++.|...+.|+. T Consensus 4 GekPy~C~~C~k~F~~~~~L~~ 25 (35) T d1srka_ 4 GKRPFVCRICLSAFTTKANCAR 25 (35) T ss_dssp CCSCEECSSSCCEESSHHHHHH T ss_pred CCCCCCCCCCCCCCCCHHHHHH T ss_conf 8746028878896568699998 No 8 >d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Probab=59.60 E-value=1 Score=22.37 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=17.9 Q ss_pred CCCEEECCCCCCEEEECCCCCC Q ss_conf 9988998888821365467684 Q gi|254780167|r 45 EENEKHCPYCSTLYHFDSSLDS 66 (78) Q Consensus 45 ~~~~v~C~YC~~~fv~~~~l~~ 66 (78) .+++-.|.+|++.|...++|.. T Consensus 4 gekpy~C~~Cgk~F~~~~~L~~ 25 (33) T d1x6ea1 4 GEKPYGCVECGKAFSRSSILVQ 25 (33) T ss_dssp TCCCEECSSSCCEESSHHHHHH T ss_pred CCCCEECCCCCCEECCHHHHHH T ss_conf 9988638999887286678676 No 9 >d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Probab=58.76 E-value=0.82 Score=22.87 Aligned_cols=20 Identities=15% Similarity=0.388 Sum_probs=16.0 Q ss_pred CCEEECCCCCCEEEECCCCC Q ss_conf 98899888882136546768 Q gi|254780167|r 46 ENEKHCPYCSTLYHFDSSLD 65 (78) Q Consensus 46 ~~~v~C~YC~~~fv~~~~l~ 65 (78) +.+-.|++|++.|...+.|+ T Consensus 1 EKPy~C~~C~k~F~~~~~L~ 20 (28) T d1a1ia2 1 QKPFQCRICMRNFSRSDHLT 20 (28) T ss_dssp CCCEECTTTCCEESCHHHHH T ss_pred CCCCCCCCCCCEECCCCCCC T ss_conf 90800997869744620051 No 10 >d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=54.44 E-value=2.3 Score=20.40 Aligned_cols=22 Identities=9% Similarity=0.400 Sum_probs=18.5 Q ss_pred CCCCEEECCC--CCCEEEECCCCC Q ss_conf 9998899888--882136546768 Q gi|254780167|r 44 GEENEKHCPY--CSTLYHFDSSLD 65 (78) Q Consensus 44 ~~~~~v~C~Y--C~~~fv~~~~l~ 65 (78) ..+.+-.|.| |++.|...+.|+ T Consensus 14 ~gekpy~C~~~~C~k~F~~~~~L~ 37 (47) T d1ncsa_ 14 MPDKTFECLFPGCTKTFKRRYNIR 37 (47) T ss_dssp ETTTEEECCCTTCCCEECSSSSHH T ss_pred CCCCCEECCCCCCCCCCCCCHHHH T ss_conf 688885778678996045845777 No 11 >d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Probab=51.82 E-value=1.3 Score=21.70 Aligned_cols=21 Identities=24% Similarity=0.494 Sum_probs=17.4 Q ss_pred CCCEEECCCCCCEEEECCCCC Q ss_conf 998899888882136546768 Q gi|254780167|r 45 EENEKHCPYCSTLYHFDSSLD 65 (78) Q Consensus 45 ~~~~v~C~YC~~~fv~~~~l~ 65 (78) .+.+-.|.+|++.|...+.|+ T Consensus 5 gekPy~C~~C~k~F~~~~~L~ 25 (36) T d1x6ha2 5 GEKPYACSHCDKTFRQKQLLD 25 (36) T ss_dssp CCCCEECSSSSCEESSHHHHH T ss_pred CCCCEECCCCCCCCCCHHHHH T ss_conf 987978899878758776888 No 12 >d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Probab=49.82 E-value=0.98 Score=22.45 Aligned_cols=18 Identities=17% Similarity=0.425 Sum_probs=14.4 Q ss_pred EEECCCCCCEEEECCCCC Q ss_conf 899888882136546768 Q gi|254780167|r 48 EKHCPYCSTLYHFDSSLD 65 (78) Q Consensus 48 ~v~C~YC~~~fv~~~~l~ 65 (78) +-.|++|++.|...+.|+ T Consensus 2 p~~C~~C~k~F~~~~~L~ 19 (29) T d2adra1 2 SFVCEVCTRAFARQEHLK 19 (29) T ss_dssp CBCCTTTCCCBSCHHHHH T ss_pred CCCCCCCCCCCCCCHHCC T ss_conf 679989989988704704 No 13 >d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Probab=45.23 E-value=1.7 Score=21.11 Aligned_cols=17 Identities=24% Similarity=0.549 Sum_probs=13.9 Q ss_pred EECCCCCCEEEECCCCC Q ss_conf 99888882136546768 Q gi|254780167|r 49 KHCPYCSTLYHFDSSLD 65 (78) Q Consensus 49 v~C~YC~~~fv~~~~l~ 65 (78) -.|++|++.|...+.|. T Consensus 3 y~C~~C~k~F~~~s~L~ 19 (29) T d1sp1a_ 3 FACPECPKRFMRSDHLS 19 (29) T ss_dssp SCCTTTTCCCSCSHHHH T ss_pred EECCCCCCEECCHHHHH T ss_conf 98990888604357831 No 14 >d2fzcb2 g.41.7.1 (B:101-153) Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Probab=44.58 E-value=8.4 Score=17.36 Aligned_cols=28 Identities=11% Similarity=0.373 Sum_probs=19.2 Q ss_pred CCCEEEEECCCCC-EEECCCCCCEEEECC Q ss_conf 9867999959998-899888882136546 Q gi|254780167|r 35 DHPHVFINMGEEN-EKHCPYCSTLYHFDS 62 (78) Q Consensus 35 gHP~V~l~l~~~~-~v~C~YC~~~fv~~~ 62 (78) .-++.|+..+++. ..-|-||++.|-.+. T Consensus 21 v~~~f~v~~~~~~~~lrC~YCek~~~~~~ 49 (53) T d2fzcb2 21 VSSSFAVRKRANDIALKCKYCEKEFSHNV 49 (53) T ss_dssp SCCEEEEEECSSSEEEEETTTCCEEEHHH T ss_pred CCCEEEEEECCCCEEEEEECCCCCCCHHH T ss_conf 66338999538973899677896906400 No 15 >d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]} Probab=42.86 E-value=3 Score=19.80 Aligned_cols=10 Identities=20% Similarity=0.454 Sum_probs=8.1 Q ss_pred ECCCCCCEEE Q ss_conf 9888882136 Q gi|254780167|r 50 HCPYCSTLYH 59 (78) Q Consensus 50 ~C~YC~~~fv 59 (78) +|+||+++-. T Consensus 3 vC~~Cg~~C~ 12 (28) T d1bboa1 3 ICEECGIRAK 12 (28) T ss_dssp BCTTTCCBCS T ss_pred CCCCCCCCCC T ss_conf 6002176437 No 16 >d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Probab=42.22 E-value=2.1 Score=20.63 Aligned_cols=21 Identities=14% Similarity=0.320 Sum_probs=16.7 Q ss_pred CCEEECCCCCCEEEECCCCCC Q ss_conf 988998888821365467684 Q gi|254780167|r 46 ENEKHCPYCSTLYHFDSSLDS 66 (78) Q Consensus 46 ~~~v~C~YC~~~fv~~~~l~~ 66 (78) +.+-.|.+||+.|...+.|+- T Consensus 3 ~Kpy~C~~Cgk~F~~~~~L~~ 23 (39) T d2epsa1 3 GKPYICQSCGKGFSRPDHLNG 23 (39) T ss_dssp SCCEECSSSCCEESSHHHHHH T ss_pred CCCCCCCCCCCCCCCHHHHHC T ss_conf 888019988888387678613 No 17 >d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Probab=40.68 E-value=1.5 Score=21.50 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=16.9 Q ss_pred CCCEEECCCCCCEEEECCCCC Q ss_conf 998899888882136546768 Q gi|254780167|r 45 EENEKHCPYCSTLYHFDSSLD 65 (78) Q Consensus 45 ~~~~v~C~YC~~~fv~~~~l~ 65 (78) .+.+-.|.+||+.|...+.|. T Consensus 9 ~ekpy~C~~CgK~F~~~s~L~ 29 (38) T d2cota2 9 ERRRYKCDECGKSFSHSSDLS 29 (38) T ss_dssp CSCSSBCSSSCCBCSCHHHHH T ss_pred CCCCEECCCCCCEEECHHHHH T ss_conf 998972588786050778978 No 18 >d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]} Probab=39.44 E-value=2.8 Score=19.93 Aligned_cols=16 Identities=25% Similarity=0.607 Sum_probs=12.6 Q ss_pred EECCCCCCEEEECCCC Q ss_conf 9988888213654676 Q gi|254780167|r 49 KHCPYCSTLYHFDSSL 64 (78) Q Consensus 49 v~C~YC~~~fv~~~~l 64 (78) -+|.||+.+|-.+-++ T Consensus 7 ~eC~lC~vKYs~~~Sv 22 (48) T d2yrka1 7 PECTLCGVKYSARLSI 22 (48) T ss_dssp SCCTTTTCCCCSSSCH T ss_pred CCCCCCCEEEEEECCH T ss_conf 4276115343010216 No 19 >d1pg5b2 g.41.7.1 (B:105-160) Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Probab=38.40 E-value=10 Score=16.89 Aligned_cols=27 Identities=26% Similarity=0.534 Sum_probs=17.6 Q ss_pred CCCCCEEEEECCC-CCEEECCCCCCEEEEC Q ss_conf 8898679999599-9889988888213654 Q gi|254780167|r 33 PLDHPHVFINMGE-ENEKHCPYCSTLYHFD 61 (78) Q Consensus 33 ~lgHP~V~l~l~~-~~~v~C~YC~~~fv~~ 61 (78) +.. |+ |.-+++ +....|-||++.+..+ T Consensus 21 ~~~-~~-F~v~~~~~~~lrC~YCe~~~~~~ 48 (56) T d1pg5b2 21 EAI-PT-FKTLTEKPLKMRCEYCETIIDEN 48 (56) T ss_dssp TSC-CE-EEEEETTTTEEEETTTCCEEEHH T ss_pred CCC-CE-EEEEECCCCEEEEECCCCEECHH T ss_conf 877-56-89971899889966789791599 No 20 >d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Probab=36.20 E-value=2.9 Score=19.89 Aligned_cols=18 Identities=22% Similarity=0.691 Sum_probs=14.6 Q ss_pred EEECCC--CCCEEEECCCCC Q ss_conf 899888--882136546768 Q gi|254780167|r 48 EKHCPY--CSTLYHFDSSLD 65 (78) Q Consensus 48 ~v~C~Y--C~~~fv~~~~l~ 65 (78) +-.|+| |++.|...+.|+ T Consensus 2 p~~C~~~gCgk~F~~~~~L~ 21 (30) T d1ubdc3 2 PFQCTFEGCGKRFSLDFNLR 21 (30) T ss_dssp CEECCSTTCCCEESCHHHHH T ss_pred CCCCCCCCCCCEECCHHHCC T ss_conf 81588899793589177837 No 21 >d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Probab=33.76 E-value=1.9 Score=20.90 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=17.0 Q ss_pred CCCEEECCCCCCEEEECCCCC Q ss_conf 998899888882136546768 Q gi|254780167|r 45 EENEKHCPYCSTLYHFDSSLD 65 (78) Q Consensus 45 ~~~~v~C~YC~~~fv~~~~l~ 65 (78) .+.+-.|+.|++.|...+.|+ T Consensus 8 geKPy~C~~C~k~F~~~~~L~ 28 (37) T d1p7aa_ 8 GIKPFQCPDCDRSFSRSDHLA 28 (37) T ss_dssp CSSSBCCTTTCCCBSSHHHHH T ss_pred CCCCEEECCCCCEECCHHHHH T ss_conf 966857599998924889999 No 22 >d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Probab=31.40 E-value=9.3 Score=17.10 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=13.5 Q ss_pred CCEEECCCCCCEEEECCC Q ss_conf 988998888821365467 Q gi|254780167|r 46 ENEKHCPYCSTLYHFDSS 63 (78) Q Consensus 46 ~~~v~C~YC~~~fv~~~~ 63 (78) +.+-.|-.||++|..... T Consensus 1 EkPf~C~~CgrkFArsde 18 (28) T d1a1ia3 1 EKPFACDICGRKFARSDE 18 (28) T ss_dssp CCCEECTTTCCEESSHHH T ss_pred CCCCCCCHHHHHHHCCHH T ss_conf 987120001025513126 No 23 >d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Probab=30.72 E-value=4.9 Score=18.63 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=14.5 Q ss_pred EEECCCCCCEEEECCCCC Q ss_conf 899888882136546768 Q gi|254780167|r 48 EKHCPYCSTLYHFDSSLD 65 (78) Q Consensus 48 ~v~C~YC~~~fv~~~~l~ 65 (78) +-.|..||+-|...+.|. T Consensus 2 Py~C~eCgK~F~~~s~L~ 19 (26) T d1x6ea2 2 PYKCLECGKAFSQNSGLI 19 (26) T ss_dssp CEECSSSCCEESSHHHHH T ss_pred CCCCCCCCCEECCCCCCC T ss_conf 824889858236673636 No 24 >d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with biphenyl dioxygenase {Burkholderia cepacia [TaxId: 292]} Probab=30.30 E-value=14 Score=16.23 Aligned_cols=46 Identities=9% Similarity=0.021 Sum_probs=25.6 Q ss_pred EEECCEEEEEECCCCCCCCCEEEEECCCCCEEECCCCCCEEEECCC Q ss_conf 9946549999378998898679999599988998888821365467 Q gi|254780167|r 18 IKIGVKKFMCAGTSPPLDHPHVFINMGEENEKHCPYCSTLYHFDSS 63 (78) Q Consensus 18 I~v~~~~v~CdGg~g~lgHP~V~l~l~~~~~v~C~YC~~~fv~~~~ 63 (78) +..+.+.++-+.-=+-.|-|...-.+-+++.++|||.+-.|-++.. T Consensus 30 ~r~~~~~~A~~~~CpH~g~~l~~g~~~~~~~i~Cp~H~~~F~l~tG 75 (109) T d1fqta_ 30 FNVDGELFATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTG 75 (109) T ss_dssp EEETTEEEEEESBCTTSSCBSSTTCCEETTEEECTTTCCEEETTTC T ss_pred EEECCEEEEEEEECCCCCCCCCCCEEECCCEEECCCCCCEEECCCC T ss_conf 9989999999854442475201340514877874554879988982 No 25 >d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Probab=30.04 E-value=4.9 Score=18.64 Aligned_cols=18 Identities=28% Similarity=0.774 Sum_probs=14.7 Q ss_pred EECCC--CCCEEEECCCCCC Q ss_conf 99888--8821365467684 Q gi|254780167|r 49 KHCPY--CSTLYHFDSSLDS 66 (78) Q Consensus 49 v~C~Y--C~~~fv~~~~l~~ 66 (78) -.|+| |++.|...+.|+. T Consensus 3 f~C~~~gC~K~F~~~~~L~~ 22 (28) T d1ubdc4 3 YVCPFDGCNKKFAQSTNLKS 22 (28) T ss_dssp CCCCSTTCCCCCSSTTTTHH T ss_pred CCCCCCCCCCCCCCHHHHHH T ss_conf 18988996986998999998 No 26 >d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=29.63 E-value=2.6 Score=20.14 Aligned_cols=19 Identities=16% Similarity=0.345 Sum_probs=14.9 Q ss_pred CEEECCC--CCCEEEECCCCC Q ss_conf 8899888--882136546768 Q gi|254780167|r 47 NEKHCPY--CSTLYHFDSSLD 65 (78) Q Consensus 47 ~~v~C~Y--C~~~fv~~~~l~ 65 (78) .+-.|.| |++.|...+.|+ T Consensus 2 rP~~C~~pgC~k~F~r~~~L~ 22 (32) T d1zfda_ 2 RPYSCDHPGCDKAFVRNHDLI 22 (32) T ss_dssp CSBCCCCTTCCCCBSSSHHHH T ss_pred CCEECCCCCCCCEECCHHHHH T ss_conf 580792999899558777888 No 27 >d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Probab=29.34 E-value=6.4 Score=18.00 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=16.2 Q ss_pred CCCEEECCCCCCEEEECCCCC Q ss_conf 998899888882136546768 Q gi|254780167|r 45 EENEKHCPYCSTLYHFDSSLD 65 (78) Q Consensus 45 ~~~~v~C~YC~~~fv~~~~l~ 65 (78) .+.+-.|++|++.|...+.|. T Consensus 27 ~ekpy~C~~C~k~F~~~~~L~ 47 (53) T d2csha1 27 GLRPYGCGVCGKKFKMKHHLV 47 (53) T ss_dssp CCCSEECTTTSCEESSSHHHH T ss_pred CCCCCCCCCCCCEECCHHHHH T ss_conf 465870797598925788999 No 28 >d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Probab=29.11 E-value=3.1 Score=19.70 Aligned_cols=18 Identities=22% Similarity=0.606 Sum_probs=14.1 Q ss_pred EEECCC--CCCEEEECCCCC Q ss_conf 899888--882136546768 Q gi|254780167|r 48 EKHCPY--CSTLYHFDSSLD 65 (78) Q Consensus 48 ~v~C~Y--C~~~fv~~~~l~ 65 (78) +-.|+| |++.|...+.|+ T Consensus 2 p~~C~~~gCgk~F~~~~~L~ 21 (30) T d2glia3 2 PHKCTFEGCRKSYSRLENLK 21 (30) T ss_dssp CCCCCSTTCCCCCSSHHHHH T ss_pred CEECCCCCCCCEECCHHHHH T ss_conf 80688899884489765755 No 29 >d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=28.07 E-value=10 Score=16.93 Aligned_cols=14 Identities=14% Similarity=0.634 Sum_probs=11.0 Q ss_pred CEEECCCCCCEEEE Q ss_conf 88998888821365 Q gi|254780167|r 47 NEKHCPYCSTLYHF 60 (78) Q Consensus 47 ~~v~C~YC~~~fv~ 60 (78) ..-.|.+|++.|.- T Consensus 4 r~~~C~~C~k~F~s 17 (37) T d1njqa_ 4 RSYTCSFCKREFRS 17 (37) T ss_dssp SSEECTTTCCEESS T ss_pred CCCCCCCCCCCCCC T ss_conf 76288998883378 No 30 >d2i3ha1 g.52.1.1 (A:78-167) BIR-containing protein 7 (ML-IAP, livin) {Human (Homo sapiens) [TaxId: 9606]} Probab=26.92 E-value=18 Score=15.54 Aligned_cols=20 Identities=20% Similarity=0.629 Sum_probs=15.0 Q ss_pred EEECCCCCEEECCCCCCEEE Q ss_conf 99959998899888882136 Q gi|254780167|r 40 FINMGEENEKHCPYCSTLYH 59 (78) Q Consensus 40 ~l~l~~~~~v~C~YC~~~fv 59 (78) |.-.|.+..+.|.||+.... T Consensus 36 Fyytg~~D~v~C~~C~~~l~ 55 (90) T d2i3ha1 36 FFHTGHQDKVRCFFCYGGLQ 55 (90) T ss_dssp EEECSSTTCEEETTTCCEEE T ss_pred CEECCCCCEEEECCCCCEEC T ss_conf 87879999789635788907 No 31 >d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Probab=26.51 E-value=5.1 Score=18.53 Aligned_cols=18 Identities=22% Similarity=0.593 Sum_probs=14.2 Q ss_pred EEECCC--CCCEEEECCCCC Q ss_conf 899888--882136546768 Q gi|254780167|r 48 EKHCPY--CSTLYHFDSSLD 65 (78) Q Consensus 48 ~v~C~Y--C~~~fv~~~~l~ 65 (78) +-.|.| |++.|...+.|+ T Consensus 2 p~~C~~~gC~k~F~~~~~L~ 21 (29) T d1a1ia1 2 PYACPVESCDRRFSRSADLT 21 (29) T ss_dssp CEECCSTTCCCEESSHHHHH T ss_pred CEECCCCCCCCEECCHHHHH T ss_conf 80789899885789665755 No 32 >d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Probab=25.18 E-value=5 Score=18.60 Aligned_cols=17 Identities=18% Similarity=0.544 Sum_probs=13.2 Q ss_pred CEEECCCCCCEEEECCC Q ss_conf 88998888821365467 Q gi|254780167|r 47 NEKHCPYCSTLYHFDSS 63 (78) Q Consensus 47 ~~v~C~YC~~~fv~~~~ 63 (78) ++-.||-|..||+.+.. T Consensus 2 kp~~cpic~qrfkrkdr 18 (32) T d2epqa1 2 KPYSCPVCGLRFKRKDR 18 (32) T ss_dssp CSSEETTTTEECSCHHH T ss_pred CCCCCCHHHHHHHCCCC T ss_conf 87436317877512222 No 33 >d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]} Probab=24.30 E-value=19 Score=15.44 Aligned_cols=28 Identities=21% Similarity=0.533 Sum_probs=16.5 Q ss_pred CCEEECCCCCCEEEECCCCCC-CCCCCCCCE Q ss_conf 988998888821365467684-446880024 Q gi|254780167|r 46 ENEKHCPYCSTLYHFDSSLDS-KETLPVGCL 75 (78) Q Consensus 46 ~~~v~C~YC~~~fv~~~~l~~-~es~P~~c~ 75 (78) .+.-.|.-|+ |+|++.... .+..||+-. T Consensus 5 ~~ky~C~~Cg--yiYDp~~GD~~~gI~pGT~ 33 (70) T d1dx8a_ 5 EGKYECEACG--YIYEPEKGDKFAGIPPGTP 33 (70) T ss_dssp SSCEEETTTC--CEECTTTCCTTTTCCSSCC T ss_pred CCEEECCCCC--EEECCCCCCCCCCCCCCCC T ss_conf 8707829999--0878344784568798999 No 34 >d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Probab=24.26 E-value=4.5 Score=18.85 Aligned_cols=18 Identities=17% Similarity=0.526 Sum_probs=13.2 Q ss_pred EECCC--CCCEEEECCCCCC Q ss_conf 99888--8821365467684 Q gi|254780167|r 49 KHCPY--CSTLYHFDSSLDS 66 (78) Q Consensus 49 v~C~Y--C~~~fv~~~~l~~ 66 (78) -.|+| |+++|...+.|+. T Consensus 3 f~C~~~~C~k~F~~~~~L~~ 22 (31) T d1sp2a_ 3 FMCTWSYCGKRFTRSDELQR 22 (31) T ss_dssp CBCCSTTCCCBCSSHHHHHH T ss_pred CCCCCCCCCCCCCCHHHHHH T ss_conf 99909987917487567666 No 35 >d1jd5a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Probab=24.20 E-value=22 Score=15.10 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=14.7 Q ss_pred EEECCCCCEEECCCCCCEEE Q ss_conf 99959998899888882136 Q gi|254780167|r 40 FINMGEENEKHCPYCSTLYH 59 (78) Q Consensus 40 ~l~l~~~~~v~C~YC~~~fv 59 (78) |+-.+....+.|-||+.... T Consensus 39 Fyytg~~D~v~Cf~C~~~l~ 58 (105) T d1jd5a_ 39 FFYTGVGDRVRCFSCGGGLM 58 (105) T ss_dssp EEECSSTTCEEETTTCCEEE T ss_pred CEECCCCCEEEECCCCCCCC T ss_conf 88879999889674588814 No 36 >d2b1xa1 b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alpha subunit, N-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]} Probab=23.53 E-value=15 Score=15.95 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=29.9 Q ss_pred CCEEEECCEE-EEEECCCCCC----------CCCEEEEECCCCCEEECCCCCCEEEECCCCCCC Q ss_conf 8519946549-9993789988----------986799995999889988888213654676844 Q gi|254780167|r 15 HSRIKIGVKK-FMCAGTSPPL----------DHPHVFINMGEENEKHCPYCSTLYHFDSSLDSK 67 (78) Q Consensus 15 ~~~I~v~~~~-v~CdGg~g~l----------gHP~V~l~l~~~~~v~C~YC~~~fv~~~~l~~~ 67 (78) ..+..+.... +...+..|.+ |.+.+.-..+..+.+.|||-|-.|-.++.+... T Consensus 61 ~~~~~~~~~~~vv~R~~dG~i~a~~N~C~HRG~~l~~~~~g~~~~i~CpYHgW~yd~~G~l~~~ 124 (162) T d2b1xa1 61 YVVRYISEDQFIVCRDEGGEIRGHLNACRHRGMQVCRAEMGNTSHFRCPYHGWTYSNTGSLVGV 124 (162) T ss_dssp EEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCSCCSSEEECSEEECTTTCCEEETTSCEEEC T ss_pred EEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEC T ss_conf 3567626875289955774168760313667520000354751452389754687289976788 No 37 >d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Probab=23.47 E-value=5.9 Score=18.20 Aligned_cols=16 Identities=31% Similarity=0.922 Sum_probs=13.2 Q ss_pred ECCC--CCCEEEECCCCC Q ss_conf 9888--882136546768 Q gi|254780167|r 50 HCPY--CSTLYHFDSSLD 65 (78) Q Consensus 50 ~C~Y--C~~~fv~~~~l~ 65 (78) .|+| |++.|.....|+ T Consensus 3 ~C~~~~C~k~F~~~~~L~ 20 (36) T d2dlka2 3 SCPEPACGKSFNFKKHLK 20 (36) T ss_dssp ECSCTTTCCEESSHHHHH T ss_pred ECCCCCCCCEECCHHHHC T ss_conf 779989897658746825 No 38 >d3d9ta1 g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sapiens) [TaxId: 9606]} Probab=21.98 E-value=26 Score=14.72 Aligned_cols=20 Identities=20% Similarity=0.542 Sum_probs=14.8 Q ss_pred EEECCCCCEEECCCCCCEEE Q ss_conf 99959998899888882136 Q gi|254780167|r 40 FINMGEENEKHCPYCSTLYH 59 (78) Q Consensus 40 ~l~l~~~~~v~C~YC~~~fv 59 (78) |+-.+....+.|.||+.... T Consensus 30 Fyytg~~D~v~C~~C~~~l~ 49 (87) T d3d9ta1 30 FYYVGRNDDVKCFCCDGGLR 49 (87) T ss_dssp EEECSSTTCEEETTTCCEEE T ss_pred CEECCCCCEEEECCCCCEEC T ss_conf 88889999889575788905 No 39 >d1i3oe_ g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]} Probab=20.28 E-value=20 Score=15.35 Aligned_cols=19 Identities=16% Similarity=0.328 Sum_probs=13.8 Q ss_pred EECCCCCEEECCCCCCEEE Q ss_conf 9959998899888882136 Q gi|254780167|r 41 INMGEENEKHCPYCSTLYH 59 (78) Q Consensus 41 l~l~~~~~v~C~YC~~~fv 59 (78) +-.|.+..+.|-||+.... T Consensus 64 yytg~~D~v~Cf~C~~~l~ 82 (111) T d1i3oe_ 64 YYTGIGDQVQCFACGGKLK 82 (111) T ss_dssp EEEEETTEEEETTTCCEEC T ss_pred EECCCCCEEEECCCCCEEC T ss_conf 7879998679476798917 Done!