Query         gi|254780167|ref|YP_003064580.1| hypothetical protein CLIBASIA_00250 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 78
No_of_seqs    101 out of 207
Neff          3.6 
Searched_HMMs 13730
Date          Sun May 22 22:49:39 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780167.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1v54f_ g.41.5.3 (F:) Cytochro  96.1  0.0034 2.5E-07   35.9   4.5   46   16-63     45-94  (98)
  2 d1wjpa2 g.37.1.1 (A:43-66) Zin  90.5   0.025 1.8E-06   31.2   0.1   11   49-59      1-11  (26)
  3 d1vq0a2 g.81.1.1 (A:231-287) H  71.9    0.86 6.3E-05   22.8   1.9   16   47-62     29-44  (57)
  4 d1xjha_ g.81.1.1 (A:) HSP33, C  69.6    0.98 7.2E-05   22.4   1.8   15   48-62     37-51  (62)
  5 d1vzya2 g.81.1.1 (A:234-290) H  68.4     1.1 7.9E-05   22.2   1.8   16   47-62     31-46  (57)
  6 d2ct1a2 g.37.1.1 (A:8-43) Tran  67.9    0.44 3.2E-05   24.4  -0.3   21   45-65      5-25  (36)
  7 d1srka_ g.37.1.1 (A:) Zinc fin  63.6    0.64 4.7E-05   23.4  -0.1   22   45-66      4-25  (35)
  8 d1x6ea1 g.37.1.1 (A:8-40) Zinc  59.6       1 7.4E-05   22.4   0.3   22   45-66      4-25  (33)
  9 d1a1ia2 g.37.1.1 (A:132-159) Z  58.8    0.82   6E-05   22.9  -0.3   20   46-65      1-20  (28)
 10 d1ncsa_ g.37.1.1 (A:) SWI5 zin  54.4     2.3 0.00017   20.4   1.4   22   44-65     14-37  (47)
 11 d1x6ha2 g.37.1.1 (A:8-43) Tran  51.8     1.3 9.8E-05   21.7  -0.1   21   45-65      5-25  (36)
 12 d2adra1 g.37.1.1 (A:102-130) A  49.8    0.98 7.1E-05   22.5  -1.1   18   48-65      2-19  (29)
 13 d1sp1a_ g.37.1.1 (A:) Transcri  45.2     1.7 0.00013   21.1  -0.4   17   49-65      3-19  (29)
 14 d2fzcb2 g.41.7.1 (B:101-153) A  44.6     8.4 0.00061   17.4   3.0   28   35-62     21-49  (53)
 15 d1bboa1 g.37.1.1 (A:1-28) Enha  42.9       3 0.00022   19.8   0.5   10   50-59      3-12  (28)
 16 d2epsa1 g.37.1.1 (A:408-446) P  42.2     2.1 0.00015   20.6  -0.4   21   46-66      3-23  (39)
 17 d2cota2 g.37.1.1 (A:7-44) Zinc  40.7     1.5 0.00011   21.5  -1.4   21   45-65      9-29  (38)
 18 d2yrka1 g.37.1.4 (A:8-55) Zinc  39.4     2.8 0.00021   19.9  -0.1   16   49-64      7-22  (48)
 19 d1pg5b2 g.41.7.1 (B:105-160) A  38.4      10 0.00075   16.9   2.6   27   33-61     21-48  (56)
 20 d1ubdc3 g.37.1.1 (C:351-380) Y  36.2     2.9 0.00021   19.9  -0.4   18   48-65      2-21  (30)
 21 d1p7aa_ g.37.1.1 (A:) Kruppel-  33.8     1.9 0.00014   20.9  -1.7   21   45-65      8-28  (37)
 22 d1a1ia3 g.37.1.1 (A:160-187) Z  31.4     9.3 0.00068   17.1   1.5   18   46-63      1-18  (28)
 23 d1x6ea2 g.37.1.1 (A:41-66) Zin  30.7     4.9 0.00036   18.6  -0.0   18   48-65      2-19  (26)
 24 d1fqta_ b.33.1.1 (A:) Rieske-t  30.3      14 0.00098   16.2   2.2   46   18-63     30-75  (109)
 25 d1ubdc4 g.37.1.1 (C:381-408) Y  30.0     4.9 0.00036   18.6  -0.1   18   49-66      3-22  (28)
 26 d1zfda_ g.37.1.1 (A:) SWI5 zin  29.6     2.6 0.00019   20.1  -1.6   19   47-65      2-22  (32)
 27 d2csha1 g.37.1.1 (A:8-60) Zinc  29.3     6.4 0.00047   18.0   0.4   21   45-65     27-47  (53)
 28 d2glia3 g.37.1.1 (A:168-197) F  29.1     3.1 0.00023   19.7  -1.2   18   48-65      2-21  (30)
 29 d1njqa_ g.37.1.3 (A:) SUPERMAN  28.1      10 0.00073   16.9   1.2   14   47-60      4-17  (37)
 30 d2i3ha1 g.52.1.1 (A:78-167) BI  26.9      18  0.0013   15.5   2.3   20   40-59     36-55  (90)
 31 d1a1ia1 g.37.1.1 (A:103-131) Z  26.5     5.1 0.00037   18.5  -0.5   18   48-65      2-21  (29)
 32 d2epqa1 g.37.1.1 (A:380-411) P  25.2       5 0.00036   18.6  -0.8   17   47-63      2-18  (32)
 33 d1dx8a_ g.41.5.1 (A:) Rubredox  24.3      19  0.0014   15.4   2.0   28   46-75      5-33  (70)
 34 d1sp2a_ g.37.1.1 (A:) Transcri  24.3     4.5 0.00033   18.8  -1.2   18   49-66      3-22  (31)
 35 d1jd5a_ g.52.1.1 (A:) BIR doma  24.2      22  0.0016   15.1   2.3   20   40-59     39-58  (105)
 36 d2b1xa1 b.33.1.2 (A:1-162) Nap  23.5      15  0.0011   16.0   1.4   53   15-67     61-124 (162)
 37 d2dlka2 g.37.1.1 (A:38-73) Zin  23.5     5.9 0.00043   18.2  -0.7   16   50-65      3-20  (36)
 38 d3d9ta1 g.52.1.1 (A:260-346) 2  22.0      26  0.0019   14.7   2.3   20   40-59     30-49  (87)
 39 d1i3oe_ g.52.1.1 (E:) BIR doma  20.3      20  0.0014   15.3   1.5   19   41-59     64-82  (111)

No 1  
>d1v54f_ g.41.5.3 (F:) Cytochrome c oxidase Subunit F {Cow (Bos taurus) [TaxId: 9913]}
Probab=96.10  E-value=0.0034  Score=35.91  Aligned_cols=46  Identities=13%  Similarity=0.319  Sum_probs=37.5

Q ss_pred             CEEEE----CCEEEEEECCCCCCCCCEEEEECCCCCEEECCCCCCEEEECCC
Q ss_conf             51994----6549999378998898679999599988998888821365467
Q gi|254780167|r   16 SRIKI----GVKKFMCAGTSPPLDHPHVFINMGEENEKHCPYCSTLYHFDSS   63 (78)
Q Consensus        16 ~~I~v----~~~~v~CdGg~g~lgHP~V~l~l~~~~~v~C~YC~~~fv~~~~   63 (78)
                      .++.|    +.|.|-|.|  ++-.|..+|+.+.++....|+.||.-|++...
T Consensus        45 ~P~lVpS~~~~RiVGC~~--~~D~h~v~W~~l~~g~p~RC~eCG~~fkL~~~   94 (98)
T d1v54f_          45 DPNLVPSITNKRIVGCIC--EEDNSTVIWFWLHKGEAQRCPSCGTHYKLVPH   94 (98)
T ss_dssp             SCEEEECSSSEEEEEECC--STTCSCCEEEEEESSSCEECTTTCCEEEEECC
T ss_pred             CCCEECCCCCCEEEEECC--CCCCCEEEEEEEECCCCCCCCCCCCEEEEEEC
T ss_conf             986804779864886517--88776337889757998616778868998314


No 2  
>d1wjpa2 g.37.1.1 (A:43-66) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}
Probab=90.49  E-value=0.025  Score=31.18  Aligned_cols=11  Identities=45%  Similarity=1.201  Sum_probs=9.4

Q ss_pred             EECCCCCCEEE
Q ss_conf             99888882136
Q gi|254780167|r   49 KHCPYCSTLYH   59 (78)
Q Consensus        49 v~C~YC~~~fv   59 (78)
                      .+|||||+||-
T Consensus         1 avcpycslrf~   11 (26)
T d1wjpa2           1 AVCPYCSLRFF   11 (26)
T ss_dssp             BCCTTTCCCBS
T ss_pred             CCCCCCEEEEC
T ss_conf             97875022437


No 3  
>d1vq0a2 g.81.1.1 (A:231-287) HSP33, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=71.92  E-value=0.86  Score=22.75  Aligned_cols=16  Identities=38%  Similarity=0.864  Sum_probs=13.9

Q ss_pred             CEEECCCCCCEEEECC
Q ss_conf             8899888882136546
Q gi|254780167|r   47 NEKHCPYCSTLYHFDS   62 (78)
Q Consensus        47 ~~v~C~YC~~~fv~~~   62 (78)
                      -.+.|.||+++|.++.
T Consensus        29 iev~C~FC~~~Y~f~~   44 (57)
T d1vq0a2          29 GEVVCKWCNTRYVFSE   44 (57)
T ss_dssp             EEEECTTTCCEEEECH
T ss_pred             EEEEEECCCCEEEECH
T ss_conf             6998478899887899


No 4  
>d1xjha_ g.81.1.1 (A:) HSP33, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=69.58  E-value=0.98  Score=22.45  Aligned_cols=15  Identities=40%  Similarity=1.167  Sum_probs=13.3

Q ss_pred             EEECCCCCCEEEECC
Q ss_conf             899888882136546
Q gi|254780167|r   48 EKHCPYCSTLYHFDS   62 (78)
Q Consensus        48 ~v~C~YC~~~fv~~~   62 (78)
                      .+.|.||++.|.++.
T Consensus        37 ev~C~fC~~~Y~f~~   51 (62)
T d1xjha_          37 DMHCDYCGNHYLFNA   51 (62)
T ss_dssp             EEECTTTCCEEEEEH
T ss_pred             EEEEECCCCEEEECH
T ss_conf             998238799888899


No 5  
>d1vzya2 g.81.1.1 (A:234-290) HSP33, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=68.36  E-value=1.1  Score=22.22  Aligned_cols=16  Identities=31%  Similarity=0.825  Sum_probs=13.6

Q ss_pred             CEEECCCCCCEEEECC
Q ss_conf             8899888882136546
Q gi|254780167|r   47 NEKHCPYCSTLYHFDS   62 (78)
Q Consensus        47 ~~v~C~YC~~~fv~~~   62 (78)
                      -.+.|.||++.|.++.
T Consensus        31 iev~C~fC~~~Y~f~~   46 (57)
T d1vzya2          31 AEAVCHFCNEKYLFTK   46 (57)
T ss_dssp             EEEECTTTCCEEEEEH
T ss_pred             EEEEEECCCCEEEECH
T ss_conf             8998018799887899


No 6  
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=67.94  E-value=0.44  Score=24.35  Aligned_cols=21  Identities=14%  Similarity=0.425  Sum_probs=17.3

Q ss_pred             CCCEEECCCCCCEEEECCCCC
Q ss_conf             998899888882136546768
Q gi|254780167|r   45 EENEKHCPYCSTLYHFDSSLD   65 (78)
Q Consensus        45 ~~~~v~C~YC~~~fv~~~~l~   65 (78)
                      .+.+-.|++|++.|...+.|+
T Consensus         5 gekP~~C~~C~k~F~~~~~L~   25 (36)
T d2ct1a2           5 GEKPYECYICHARFTQSGTMK   25 (36)
T ss_dssp             CCCSEECTTTCCEESCHHHHH
T ss_pred             CCCCEECCCCCCCCCCHHHHH
T ss_conf             987976897764114208999


No 7  
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=63.64  E-value=0.64  Score=23.45  Aligned_cols=22  Identities=9%  Similarity=0.268  Sum_probs=17.7

Q ss_pred             CCCEEECCCCCCEEEECCCCCC
Q ss_conf             9988998888821365467684
Q gi|254780167|r   45 EENEKHCPYCSTLYHFDSSLDS   66 (78)
Q Consensus        45 ~~~~v~C~YC~~~fv~~~~l~~   66 (78)
                      .+.+-.|.+|++.|...+.|+.
T Consensus         4 GekPy~C~~C~k~F~~~~~L~~   25 (35)
T d1srka_           4 GKRPFVCRICLSAFTTKANCAR   25 (35)
T ss_dssp             CCSCEECSSSCCEESSHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCHHHHHH
T ss_conf             8746028878896568699998


No 8  
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.60  E-value=1  Score=22.37  Aligned_cols=22  Identities=23%  Similarity=0.324  Sum_probs=17.9

Q ss_pred             CCCEEECCCCCCEEEECCCCCC
Q ss_conf             9988998888821365467684
Q gi|254780167|r   45 EENEKHCPYCSTLYHFDSSLDS   66 (78)
Q Consensus        45 ~~~~v~C~YC~~~fv~~~~l~~   66 (78)
                      .+++-.|.+|++.|...++|..
T Consensus         4 gekpy~C~~Cgk~F~~~~~L~~   25 (33)
T d1x6ea1           4 GEKPYGCVECGKAFSRSSILVQ   25 (33)
T ss_dssp             TCCCEECSSSCCEESSHHHHHH
T ss_pred             CCCCEECCCCCCEECCHHHHHH
T ss_conf             9988638999887286678676


No 9  
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=58.76  E-value=0.82  Score=22.87  Aligned_cols=20  Identities=15%  Similarity=0.388  Sum_probs=16.0

Q ss_pred             CCEEECCCCCCEEEECCCCC
Q ss_conf             98899888882136546768
Q gi|254780167|r   46 ENEKHCPYCSTLYHFDSSLD   65 (78)
Q Consensus        46 ~~~v~C~YC~~~fv~~~~l~   65 (78)
                      +.+-.|++|++.|...+.|+
T Consensus         1 EKPy~C~~C~k~F~~~~~L~   20 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLT   20 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHH
T ss_pred             CCCCCCCCCCCEECCCCCCC
T ss_conf             90800997869744620051


No 10 
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=54.44  E-value=2.3  Score=20.40  Aligned_cols=22  Identities=9%  Similarity=0.400  Sum_probs=18.5

Q ss_pred             CCCCEEECCC--CCCEEEECCCCC
Q ss_conf             9998899888--882136546768
Q gi|254780167|r   44 GEENEKHCPY--CSTLYHFDSSLD   65 (78)
Q Consensus        44 ~~~~~v~C~Y--C~~~fv~~~~l~   65 (78)
                      ..+.+-.|.|  |++.|...+.|+
T Consensus        14 ~gekpy~C~~~~C~k~F~~~~~L~   37 (47)
T d1ncsa_          14 MPDKTFECLFPGCTKTFKRRYNIR   37 (47)
T ss_dssp             ETTTEEECCCTTCCCEECSSSSHH
T ss_pred             CCCCCEECCCCCCCCCCCCCHHHH
T ss_conf             688885778678996045845777


No 11 
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.82  E-value=1.3  Score=21.70  Aligned_cols=21  Identities=24%  Similarity=0.494  Sum_probs=17.4

Q ss_pred             CCCEEECCCCCCEEEECCCCC
Q ss_conf             998899888882136546768
Q gi|254780167|r   45 EENEKHCPYCSTLYHFDSSLD   65 (78)
Q Consensus        45 ~~~~v~C~YC~~~fv~~~~l~   65 (78)
                      .+.+-.|.+|++.|...+.|+
T Consensus         5 gekPy~C~~C~k~F~~~~~L~   25 (36)
T d1x6ha2           5 GEKPYACSHCDKTFRQKQLLD   25 (36)
T ss_dssp             CCCCEECSSSSCEESSHHHHH
T ss_pred             CCCCEECCCCCCCCCCHHHHH
T ss_conf             987978899878758776888


No 12 
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=49.82  E-value=0.98  Score=22.45  Aligned_cols=18  Identities=17%  Similarity=0.425  Sum_probs=14.4

Q ss_pred             EEECCCCCCEEEECCCCC
Q ss_conf             899888882136546768
Q gi|254780167|r   48 EKHCPYCSTLYHFDSSLD   65 (78)
Q Consensus        48 ~v~C~YC~~~fv~~~~l~   65 (78)
                      +-.|++|++.|...+.|+
T Consensus         2 p~~C~~C~k~F~~~~~L~   19 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLK   19 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHH
T ss_pred             CCCCCCCCCCCCCCHHCC
T ss_conf             679989989988704704


No 13 
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.23  E-value=1.7  Score=21.11  Aligned_cols=17  Identities=24%  Similarity=0.549  Sum_probs=13.9

Q ss_pred             EECCCCCCEEEECCCCC
Q ss_conf             99888882136546768
Q gi|254780167|r   49 KHCPYCSTLYHFDSSLD   65 (78)
Q Consensus        49 v~C~YC~~~fv~~~~l~   65 (78)
                      -.|++|++.|...+.|.
T Consensus         3 y~C~~C~k~F~~~s~L~   19 (29)
T d1sp1a_           3 FACPECPKRFMRSDHLS   19 (29)
T ss_dssp             SCCTTTTCCCSCSHHHH
T ss_pred             EECCCCCCEECCHHHHH
T ss_conf             98990888604357831


No 14 
>d2fzcb2 g.41.7.1 (B:101-153) Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=44.58  E-value=8.4  Score=17.36  Aligned_cols=28  Identities=11%  Similarity=0.373  Sum_probs=19.2

Q ss_pred             CCCEEEEECCCCC-EEECCCCCCEEEECC
Q ss_conf             9867999959998-899888882136546
Q gi|254780167|r   35 DHPHVFINMGEEN-EKHCPYCSTLYHFDS   62 (78)
Q Consensus        35 gHP~V~l~l~~~~-~v~C~YC~~~fv~~~   62 (78)
                      .-++.|+..+++. ..-|-||++.|-.+.
T Consensus        21 v~~~f~v~~~~~~~~lrC~YCek~~~~~~   49 (53)
T d2fzcb2          21 VSSSFAVRKRANDIALKCKYCEKEFSHNV   49 (53)
T ss_dssp             SCCEEEEEECSSSEEEEETTTCCEEEHHH
T ss_pred             CCCEEEEEECCCCEEEEEECCCCCCCHHH
T ss_conf             66338999538973899677896906400


No 15 
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.86  E-value=3  Score=19.80  Aligned_cols=10  Identities=20%  Similarity=0.454  Sum_probs=8.1

Q ss_pred             ECCCCCCEEE
Q ss_conf             9888882136
Q gi|254780167|r   50 HCPYCSTLYH   59 (78)
Q Consensus        50 ~C~YC~~~fv   59 (78)
                      +|+||+++-.
T Consensus         3 vC~~Cg~~C~   12 (28)
T d1bboa1           3 ICEECGIRAK   12 (28)
T ss_dssp             BCTTTCCBCS
T ss_pred             CCCCCCCCCC
T ss_conf             6002176437


No 16 
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.22  E-value=2.1  Score=20.63  Aligned_cols=21  Identities=14%  Similarity=0.320  Sum_probs=16.7

Q ss_pred             CCEEECCCCCCEEEECCCCCC
Q ss_conf             988998888821365467684
Q gi|254780167|r   46 ENEKHCPYCSTLYHFDSSLDS   66 (78)
Q Consensus        46 ~~~v~C~YC~~~fv~~~~l~~   66 (78)
                      +.+-.|.+||+.|...+.|+-
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~   23 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNG   23 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHH
T ss_pred             CCCCCCCCCCCCCCCHHHHHC
T ss_conf             888019988888387678613


No 17 
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.68  E-value=1.5  Score=21.50  Aligned_cols=21  Identities=24%  Similarity=0.536  Sum_probs=16.9

Q ss_pred             CCCEEECCCCCCEEEECCCCC
Q ss_conf             998899888882136546768
Q gi|254780167|r   45 EENEKHCPYCSTLYHFDSSLD   65 (78)
Q Consensus        45 ~~~~v~C~YC~~~fv~~~~l~   65 (78)
                      .+.+-.|.+||+.|...+.|.
T Consensus         9 ~ekpy~C~~CgK~F~~~s~L~   29 (38)
T d2cota2           9 ERRRYKCDECGKSFSHSSDLS   29 (38)
T ss_dssp             CSCSSBCSSSCCBCSCHHHHH
T ss_pred             CCCCEECCCCCCEEECHHHHH
T ss_conf             998972588786050778978


No 18 
>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.44  E-value=2.8  Score=19.93  Aligned_cols=16  Identities=25%  Similarity=0.607  Sum_probs=12.6

Q ss_pred             EECCCCCCEEEECCCC
Q ss_conf             9988888213654676
Q gi|254780167|r   49 KHCPYCSTLYHFDSSL   64 (78)
Q Consensus        49 v~C~YC~~~fv~~~~l   64 (78)
                      -+|.||+.+|-.+-++
T Consensus         7 ~eC~lC~vKYs~~~Sv   22 (48)
T d2yrka1           7 PECTLCGVKYSARLSI   22 (48)
T ss_dssp             SCCTTTTCCCCSSSCH
T ss_pred             CCCCCCCEEEEEECCH
T ss_conf             4276115343010216


No 19 
>d1pg5b2 g.41.7.1 (B:105-160) Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=38.40  E-value=10  Score=16.89  Aligned_cols=27  Identities=26%  Similarity=0.534  Sum_probs=17.6

Q ss_pred             CCCCCEEEEECCC-CCEEECCCCCCEEEEC
Q ss_conf             8898679999599-9889988888213654
Q gi|254780167|r   33 PLDHPHVFINMGE-ENEKHCPYCSTLYHFD   61 (78)
Q Consensus        33 ~lgHP~V~l~l~~-~~~v~C~YC~~~fv~~   61 (78)
                      +.. |+ |.-+++ +....|-||++.+..+
T Consensus        21 ~~~-~~-F~v~~~~~~~lrC~YCe~~~~~~   48 (56)
T d1pg5b2          21 EAI-PT-FKTLTEKPLKMRCEYCETIIDEN   48 (56)
T ss_dssp             TSC-CE-EEEEETTTTEEEETTTCCEEEHH
T ss_pred             CCC-CE-EEEEECCCCEEEEECCCCEECHH
T ss_conf             877-56-89971899889966789791599


No 20 
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.20  E-value=2.9  Score=19.89  Aligned_cols=18  Identities=22%  Similarity=0.691  Sum_probs=14.6

Q ss_pred             EEECCC--CCCEEEECCCCC
Q ss_conf             899888--882136546768
Q gi|254780167|r   48 EKHCPY--CSTLYHFDSSLD   65 (78)
Q Consensus        48 ~v~C~Y--C~~~fv~~~~l~   65 (78)
                      +-.|+|  |++.|...+.|+
T Consensus         2 p~~C~~~gCgk~F~~~~~L~   21 (30)
T d1ubdc3           2 PFQCTFEGCGKRFSLDFNLR   21 (30)
T ss_dssp             CEECCSTTCCCEESCHHHHH
T ss_pred             CCCCCCCCCCCEECCHHHCC
T ss_conf             81588899793589177837


No 21 
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.76  E-value=1.9  Score=20.90  Aligned_cols=21  Identities=19%  Similarity=0.428  Sum_probs=17.0

Q ss_pred             CCCEEECCCCCCEEEECCCCC
Q ss_conf             998899888882136546768
Q gi|254780167|r   45 EENEKHCPYCSTLYHFDSSLD   65 (78)
Q Consensus        45 ~~~~v~C~YC~~~fv~~~~l~   65 (78)
                      .+.+-.|+.|++.|...+.|+
T Consensus         8 geKPy~C~~C~k~F~~~~~L~   28 (37)
T d1p7aa_           8 GIKPFQCPDCDRSFSRSDHLA   28 (37)
T ss_dssp             CSSSBCCTTTCCCBSSHHHHH
T ss_pred             CCCCEEECCCCCEECCHHHHH
T ss_conf             966857599998924889999


No 22 
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=31.40  E-value=9.3  Score=17.10  Aligned_cols=18  Identities=17%  Similarity=0.405  Sum_probs=13.5

Q ss_pred             CCEEECCCCCCEEEECCC
Q ss_conf             988998888821365467
Q gi|254780167|r   46 ENEKHCPYCSTLYHFDSS   63 (78)
Q Consensus        46 ~~~v~C~YC~~~fv~~~~   63 (78)
                      +.+-.|-.||++|.....
T Consensus         1 EkPf~C~~CgrkFArsde   18 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDE   18 (28)
T ss_dssp             CCCEECTTTCCEESSHHH
T ss_pred             CCCCCCCHHHHHHHCCHH
T ss_conf             987120001025513126


No 23 
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.72  E-value=4.9  Score=18.63  Aligned_cols=18  Identities=22%  Similarity=0.420  Sum_probs=14.5

Q ss_pred             EEECCCCCCEEEECCCCC
Q ss_conf             899888882136546768
Q gi|254780167|r   48 EKHCPYCSTLYHFDSSLD   65 (78)
Q Consensus        48 ~v~C~YC~~~fv~~~~l~   65 (78)
                      +-.|..||+-|...+.|.
T Consensus         2 Py~C~eCgK~F~~~s~L~   19 (26)
T d1x6ea2           2 PYKCLECGKAFSQNSGLI   19 (26)
T ss_dssp             CEECSSSCCEESSHHHHH
T ss_pred             CCCCCCCCCEECCCCCCC
T ss_conf             824889858236673636


No 24 
>d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with biphenyl dioxygenase {Burkholderia cepacia [TaxId: 292]}
Probab=30.30  E-value=14  Score=16.23  Aligned_cols=46  Identities=9%  Similarity=0.021  Sum_probs=25.6

Q ss_pred             EEECCEEEEEECCCCCCCCCEEEEECCCCCEEECCCCCCEEEECCC
Q ss_conf             9946549999378998898679999599988998888821365467
Q gi|254780167|r   18 IKIGVKKFMCAGTSPPLDHPHVFINMGEENEKHCPYCSTLYHFDSS   63 (78)
Q Consensus        18 I~v~~~~v~CdGg~g~lgHP~V~l~l~~~~~v~C~YC~~~fv~~~~   63 (78)
                      +..+.+.++-+.-=+-.|-|...-.+-+++.++|||.+-.|-++..
T Consensus        30 ~r~~~~~~A~~~~CpH~g~~l~~g~~~~~~~i~Cp~H~~~F~l~tG   75 (109)
T d1fqta_          30 FNVDGELFATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTG   75 (109)
T ss_dssp             EEETTEEEEEESBCTTSSCBSSTTCCEETTEEECTTTCCEEETTTC
T ss_pred             EEECCEEEEEEEECCCCCCCCCCCEEECCCEEECCCCCCEEECCCC
T ss_conf             9989999999854442475201340514877874554879988982


No 25 
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.04  E-value=4.9  Score=18.64  Aligned_cols=18  Identities=28%  Similarity=0.774  Sum_probs=14.7

Q ss_pred             EECCC--CCCEEEECCCCCC
Q ss_conf             99888--8821365467684
Q gi|254780167|r   49 KHCPY--CSTLYHFDSSLDS   66 (78)
Q Consensus        49 v~C~Y--C~~~fv~~~~l~~   66 (78)
                      -.|+|  |++.|...+.|+.
T Consensus         3 f~C~~~gC~K~F~~~~~L~~   22 (28)
T d1ubdc4           3 YVCPFDGCNKKFAQSTNLKS   22 (28)
T ss_dssp             CCCCSTTCCCCCSSTTTTHH
T ss_pred             CCCCCCCCCCCCCCHHHHHH
T ss_conf             18988996986998999998


No 26 
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.63  E-value=2.6  Score=20.14  Aligned_cols=19  Identities=16%  Similarity=0.345  Sum_probs=14.9

Q ss_pred             CEEECCC--CCCEEEECCCCC
Q ss_conf             8899888--882136546768
Q gi|254780167|r   47 NEKHCPY--CSTLYHFDSSLD   65 (78)
Q Consensus        47 ~~v~C~Y--C~~~fv~~~~l~   65 (78)
                      .+-.|.|  |++.|...+.|+
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~   22 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLI   22 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHH
T ss_pred             CCEECCCCCCCCEECCHHHHH
T ss_conf             580792999899558777888


No 27 
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.34  E-value=6.4  Score=18.00  Aligned_cols=21  Identities=14%  Similarity=0.317  Sum_probs=16.2

Q ss_pred             CCCEEECCCCCCEEEECCCCC
Q ss_conf             998899888882136546768
Q gi|254780167|r   45 EENEKHCPYCSTLYHFDSSLD   65 (78)
Q Consensus        45 ~~~~v~C~YC~~~fv~~~~l~   65 (78)
                      .+.+-.|++|++.|...+.|.
T Consensus        27 ~ekpy~C~~C~k~F~~~~~L~   47 (53)
T d2csha1          27 GLRPYGCGVCGKKFKMKHHLV   47 (53)
T ss_dssp             CCCSEECTTTSCEESSSHHHH
T ss_pred             CCCCCCCCCCCCEECCHHHHH
T ss_conf             465870797598925788999


No 28 
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.11  E-value=3.1  Score=19.70  Aligned_cols=18  Identities=22%  Similarity=0.606  Sum_probs=14.1

Q ss_pred             EEECCC--CCCEEEECCCCC
Q ss_conf             899888--882136546768
Q gi|254780167|r   48 EKHCPY--CSTLYHFDSSLD   65 (78)
Q Consensus        48 ~v~C~Y--C~~~fv~~~~l~   65 (78)
                      +-.|+|  |++.|...+.|+
T Consensus         2 p~~C~~~gCgk~F~~~~~L~   21 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLK   21 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHH
T ss_pred             CEECCCCCCCCEECCHHHHH
T ss_conf             80688899884489765755


No 29 
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=28.07  E-value=10  Score=16.93  Aligned_cols=14  Identities=14%  Similarity=0.634  Sum_probs=11.0

Q ss_pred             CEEECCCCCCEEEE
Q ss_conf             88998888821365
Q gi|254780167|r   47 NEKHCPYCSTLYHF   60 (78)
Q Consensus        47 ~~v~C~YC~~~fv~   60 (78)
                      ..-.|.+|++.|.-
T Consensus         4 r~~~C~~C~k~F~s   17 (37)
T d1njqa_           4 RSYTCSFCKREFRS   17 (37)
T ss_dssp             SSEECTTTCCEESS
T ss_pred             CCCCCCCCCCCCCC
T ss_conf             76288998883378


No 30 
>d2i3ha1 g.52.1.1 (A:78-167) BIR-containing protein 7 (ML-IAP, livin) {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.92  E-value=18  Score=15.54  Aligned_cols=20  Identities=20%  Similarity=0.629  Sum_probs=15.0

Q ss_pred             EEECCCCCEEECCCCCCEEE
Q ss_conf             99959998899888882136
Q gi|254780167|r   40 FINMGEENEKHCPYCSTLYH   59 (78)
Q Consensus        40 ~l~l~~~~~v~C~YC~~~fv   59 (78)
                      |.-.|.+..+.|.||+....
T Consensus        36 Fyytg~~D~v~C~~C~~~l~   55 (90)
T d2i3ha1          36 FFHTGHQDKVRCFFCYGGLQ   55 (90)
T ss_dssp             EEECSSTTCEEETTTCCEEE
T ss_pred             CEECCCCCEEEECCCCCEEC
T ss_conf             87879999789635788907


No 31 
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.51  E-value=5.1  Score=18.53  Aligned_cols=18  Identities=22%  Similarity=0.593  Sum_probs=14.2

Q ss_pred             EEECCC--CCCEEEECCCCC
Q ss_conf             899888--882136546768
Q gi|254780167|r   48 EKHCPY--CSTLYHFDSSLD   65 (78)
Q Consensus        48 ~v~C~Y--C~~~fv~~~~l~   65 (78)
                      +-.|.|  |++.|...+.|+
T Consensus         2 p~~C~~~gC~k~F~~~~~L~   21 (29)
T d1a1ia1           2 PYACPVESCDRRFSRSADLT   21 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHH
T ss_pred             CEECCCCCCCCEECCHHHHH
T ss_conf             80789899885789665755


No 32 
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.18  E-value=5  Score=18.60  Aligned_cols=17  Identities=18%  Similarity=0.544  Sum_probs=13.2

Q ss_pred             CEEECCCCCCEEEECCC
Q ss_conf             88998888821365467
Q gi|254780167|r   47 NEKHCPYCSTLYHFDSS   63 (78)
Q Consensus        47 ~~v~C~YC~~~fv~~~~   63 (78)
                      ++-.||-|..||+.+..
T Consensus         2 kp~~cpic~qrfkrkdr   18 (32)
T d2epqa1           2 KPYSCPVCGLRFKRKDR   18 (32)
T ss_dssp             CSSEETTTTEECSCHHH
T ss_pred             CCCCCCHHHHHHHCCCC
T ss_conf             87436317877512222


No 33 
>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]}
Probab=24.30  E-value=19  Score=15.44  Aligned_cols=28  Identities=21%  Similarity=0.533  Sum_probs=16.5

Q ss_pred             CCEEECCCCCCEEEECCCCCC-CCCCCCCCE
Q ss_conf             988998888821365467684-446880024
Q gi|254780167|r   46 ENEKHCPYCSTLYHFDSSLDS-KETLPVGCL   75 (78)
Q Consensus        46 ~~~v~C~YC~~~fv~~~~l~~-~es~P~~c~   75 (78)
                      .+.-.|.-|+  |+|++.... .+..||+-.
T Consensus         5 ~~ky~C~~Cg--yiYDp~~GD~~~gI~pGT~   33 (70)
T d1dx8a_           5 EGKYECEACG--YIYEPEKGDKFAGIPPGTP   33 (70)
T ss_dssp             SSCEEETTTC--CEECTTTCCTTTTCCSSCC
T ss_pred             CCEEECCCCC--EEECCCCCCCCCCCCCCCC
T ss_conf             8707829999--0878344784568798999


No 34 
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.26  E-value=4.5  Score=18.85  Aligned_cols=18  Identities=17%  Similarity=0.526  Sum_probs=13.2

Q ss_pred             EECCC--CCCEEEECCCCCC
Q ss_conf             99888--8821365467684
Q gi|254780167|r   49 KHCPY--CSTLYHFDSSLDS   66 (78)
Q Consensus        49 v~C~Y--C~~~fv~~~~l~~   66 (78)
                      -.|+|  |+++|...+.|+.
T Consensus         3 f~C~~~~C~k~F~~~~~L~~   22 (31)
T d1sp2a_           3 FMCTWSYCGKRFTRSDELQR   22 (31)
T ss_dssp             CBCCSTTCCCBCSSHHHHHH
T ss_pred             CCCCCCCCCCCCCCHHHHHH
T ss_conf             99909987917487567666


No 35 
>d1jd5a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=24.20  E-value=22  Score=15.10  Aligned_cols=20  Identities=20%  Similarity=0.373  Sum_probs=14.7

Q ss_pred             EEECCCCCEEECCCCCCEEE
Q ss_conf             99959998899888882136
Q gi|254780167|r   40 FINMGEENEKHCPYCSTLYH   59 (78)
Q Consensus        40 ~l~l~~~~~v~C~YC~~~fv   59 (78)
                      |+-.+....+.|-||+....
T Consensus        39 Fyytg~~D~v~Cf~C~~~l~   58 (105)
T d1jd5a_          39 FFYTGVGDRVRCFSCGGGLM   58 (105)
T ss_dssp             EEECSSTTCEEETTTCCEEE
T ss_pred             CEECCCCCEEEECCCCCCCC
T ss_conf             88879999889674588814


No 36 
>d2b1xa1 b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alpha subunit, N-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]}
Probab=23.53  E-value=15  Score=15.95  Aligned_cols=53  Identities=19%  Similarity=0.261  Sum_probs=29.9

Q ss_pred             CCEEEECCEE-EEEECCCCCC----------CCCEEEEECCCCCEEECCCCCCEEEECCCCCCC
Q ss_conf             8519946549-9993789988----------986799995999889988888213654676844
Q gi|254780167|r   15 HSRIKIGVKK-FMCAGTSPPL----------DHPHVFINMGEENEKHCPYCSTLYHFDSSLDSK   67 (78)
Q Consensus        15 ~~~I~v~~~~-v~CdGg~g~l----------gHP~V~l~l~~~~~v~C~YC~~~fv~~~~l~~~   67 (78)
                      ..+..+.... +...+..|.+          |.+.+.-..+..+.+.|||-|-.|-.++.+...
T Consensus        61 ~~~~~~~~~~~vv~R~~dG~i~a~~N~C~HRG~~l~~~~~g~~~~i~CpYHgW~yd~~G~l~~~  124 (162)
T d2b1xa1          61 YVVRYISEDQFIVCRDEGGEIRGHLNACRHRGMQVCRAEMGNTSHFRCPYHGWTYSNTGSLVGV  124 (162)
T ss_dssp             EEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCSCCSSEEECSEEECTTTCCEEETTSCEEEC
T ss_pred             EEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEC
T ss_conf             3567626875289955774168760313667520000354751452389754687289976788


No 37 
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.47  E-value=5.9  Score=18.20  Aligned_cols=16  Identities=31%  Similarity=0.922  Sum_probs=13.2

Q ss_pred             ECCC--CCCEEEECCCCC
Q ss_conf             9888--882136546768
Q gi|254780167|r   50 HCPY--CSTLYHFDSSLD   65 (78)
Q Consensus        50 ~C~Y--C~~~fv~~~~l~   65 (78)
                      .|+|  |++.|.....|+
T Consensus         3 ~C~~~~C~k~F~~~~~L~   20 (36)
T d2dlka2           3 SCPEPACGKSFNFKKHLK   20 (36)
T ss_dssp             ECSCTTTCCEESSHHHHH
T ss_pred             ECCCCCCCCEECCHHHHC
T ss_conf             779989897658746825


No 38 
>d3d9ta1 g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.98  E-value=26  Score=14.72  Aligned_cols=20  Identities=20%  Similarity=0.542  Sum_probs=14.8

Q ss_pred             EEECCCCCEEECCCCCCEEE
Q ss_conf             99959998899888882136
Q gi|254780167|r   40 FINMGEENEKHCPYCSTLYH   59 (78)
Q Consensus        40 ~l~l~~~~~v~C~YC~~~fv   59 (78)
                      |+-.+....+.|.||+....
T Consensus        30 Fyytg~~D~v~C~~C~~~l~   49 (87)
T d3d9ta1          30 FYYVGRNDDVKCFCCDGGLR   49 (87)
T ss_dssp             EEECSSTTCEEETTTCCEEE
T ss_pred             CEECCCCCEEEECCCCCEEC
T ss_conf             88889999889575788905


No 39 
>d1i3oe_ g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.28  E-value=20  Score=15.35  Aligned_cols=19  Identities=16%  Similarity=0.328  Sum_probs=13.8

Q ss_pred             EECCCCCEEECCCCCCEEE
Q ss_conf             9959998899888882136
Q gi|254780167|r   41 INMGEENEKHCPYCSTLYH   59 (78)
Q Consensus        41 l~l~~~~~v~C~YC~~~fv   59 (78)
                      +-.|.+..+.|-||+....
T Consensus        64 yytg~~D~v~Cf~C~~~l~   82 (111)
T d1i3oe_          64 YYTGIGDQVQCFACGGKLK   82 (111)
T ss_dssp             EEEEETTEEEETTTCCEEC
T ss_pred             EECCCCCEEEECCCCCEEC
T ss_conf             7879998679476798917


Done!