RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780167|ref|YP_003064580.1| hypothetical protein CLIBASIA_00250 [Candidatus Liberibacter asiaticus str. psy62] (78 letters) >gnl|CDD|34098 COG4391, COG4391, Uncharacterized protein conserved in bacteria [Function unknown]. Length = 62 Score = 75.8 bits (186), Expect = 3e-15 Identities = 34/61 (55%), Positives = 39/61 (63%) Query: 1 MVDHPIPHFQNDRGHSRIKIGVKKFMCAGTSPPLDHPHVFINMGEENEKHCPYCSTLYHF 60 M IPHFQND GH I+IG MC G PP DHP VF++MG+E E CPYCST Y Sbjct: 1 MAGMIIPHFQNDGGHETIEIGDLPLMCPGPEPPNDHPRVFLDMGDEGEVVCPYCSTRYRL 60 Query: 61 D 61 + Sbjct: 61 N 61 >gnl|CDD|38666 KOG3456, KOG3456, KOG3456, NADH:ubiquinone oxidoreductase, NDUFS6/13 kDa subunit [Energy production and conversion]. Length = 120 Score = 33.9 bits (77), Expect = 0.009 Identities = 13/35 (37%), Positives = 18/35 (51%) Query: 27 CAGTSPPLDHPHVFINMGEENEKHCPYCSTLYHFD 61 C G +P L HP V+IN+ + C YC + D Sbjct: 83 CDGGTPALGHPKVYINLDKPGPHICGYCGLRFVQD 117 >gnl|CDD|31472 COG1281, COG1281, Disulfide bond chaperones of the HSP33 family [Posttranslational modification, protein turnover, chaperones]. Length = 286 Score = 30.2 bits (68), Expect = 0.12 Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 3/24 (12%) Query: 43 MGEENEK---HCPYCSTLYHFDSS 63 M EE+ C +C T Y FD Sbjct: 258 MLEEDGGIEVTCEFCGTKYLFDEE 281 >gnl|CDD|144868 pfam01430, HSP33, Hsp33 protein. Hsp33 is a molecular chaperone, distinguished from all other known chaperones by its mode of functional regulation. Its activity is redox regulated. Hsp33 is a cytoplasmically localized protein with highly reactive cysteines that respond quickly to changes in the redox environment. Oxidising conditions like H2O2 cause disulfide bonds to form in Hsp33, a process that leads to the activation of its chaperone function. Length = 274 Score = 28.3 bits (64), Expect = 0.48 Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 3/22 (13%) Query: 43 MGEENEK---HCPYCSTLYHFD 61 M EE+ K C +C Y FD Sbjct: 252 MIEEDGKIEVTCEFCGKKYRFD 273 >gnl|CDD|29605 cd00498, Hsp33, Heat shock protein 33 (Hsp33): Cytosolic protein that acts as a molecular chaperone under oxidative conditions. In normal (reducing) cytosolic conditions, four conserved Cys residues are coordinated by a Zn ion. Under oxidative stress (such as heat shock), the Cys are reversibly oxidized to disulfide bonds, which causes the chaperone activity to be turned on. Hsp33 is homodimeric in its functional form.. Length = 275 Score = 27.1 bits (60), Expect = 1.2 Identities = 8/21 (38%), Positives = 9/21 (42%) Query: 41 INMGEENEKHCPYCSTLYHFD 61 I E C +C YHFD Sbjct: 255 IEEDGGIEVTCEFCGEKYHFD 275 >gnl|CDD|30564 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 464 Score = 24.4 bits (53), Expect = 7.5 Identities = 9/24 (37%), Positives = 11/24 (45%) Query: 2 VDHPIPHFQNDRGHSRIKIGVKKF 25 D PH +N+ S GVK F Sbjct: 229 SDLIFPHHENEIAQSEAATGVKPF 252 >gnl|CDD|145637 pfam02598, DUF171, Uncharacterized ACR, COG2106. Length = 283 Score = 24.2 bits (53), Expect = 8.9 Identities = 11/26 (42%), Positives = 11/26 (42%) Query: 23 KKFMCAGTSPPLDHPHVFINMGEENE 48 AG PPLD PH EE E Sbjct: 88 PYLKYAGLLPPLDAPHHMSRSPEEGE 113 >gnl|CDD|146710 pfam04216, FdhE, Protein involved in formate dehydrogenase formation. The function of these proteins is unknown. They may possibly be involved in the formation of formate dehydrogenase. Length = 287 Score = 23.9 bits (52), Expect = 9.5 Identities = 6/11 (54%), Positives = 7/11 (63%) Query: 50 HCPYCSTLYHF 60 HC C T +HF Sbjct: 197 HCSLCETEWHF 207 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.322 0.140 0.461 Gapped Lambda K H 0.267 0.0702 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 1,011,097 Number of extensions: 42418 Number of successful extensions: 102 Number of sequences better than 10.0: 1 Number of HSP's gapped: 102 Number of HSP's successfully gapped: 10 Length of query: 78 Length of database: 6,263,737 Length adjustment: 48 Effective length of query: 30 Effective length of database: 5,226,505 Effective search space: 156795150 Effective search space used: 156795150 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 51 (23.5 bits)