RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780167|ref|YP_003064580.1| hypothetical protein
CLIBASIA_00250 [Candidatus Liberibacter asiaticus str. psy62]
         (78 letters)



>2jz8_A Uncharacterized protein BH09830; zinc binding, structural
          genomics, unknown function, PSI-2, protein structure
          initiative; NMR {Bartonella henselae str}
          Length = 87

 Score =  104 bits (260), Expect = 6e-24
 Identities = 46/77 (59%), Positives = 57/77 (74%)

Query: 1  MVDHPIPHFQNDRGHSRIKIGVKKFMCAGTSPPLDHPHVFINMGEENEKHCPYCSTLYHF 60
          M D+ IPHFQND G+  I+IGVK+FMC G + P DHPH+FI+MG  +EK CPYCSTLY +
Sbjct: 1  MADYNIPHFQNDLGYKIIEIGVKEFMCVGATQPFDHPHIFIDMGSTDEKICPYCSTLYRY 60

Query: 61 DSSLDSKETLPVGCLLS 77
          D SL   +T P GCL +
Sbjct: 61 DPSLSYNQTNPTGCLYN 77


>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown
          function, PSI-2, protein structure initiative; NMR
          {Rhodobacter sphaeroides 2}
          Length = 80

 Score = 52.2 bits (125), Expect = 3e-08
 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 18 IKIGVKKFMCAGTSPPLDHPHVFINMGEENEKH-CPYCSTLY 58
          + +   K  C G    L HP V++++  E     C YC   Y
Sbjct: 22 VVVSTWKVACDGGEGALGHPRVWLSIPHETGFVECGYCDRRY 63


>2jrr_A Uncharacterized protein; solution structure, SIR90, structural
          genomics, PSI-2, protein structure initiative; NMR
          {Silicibacter pomeroyi}
          Length = 67

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 18 IKIGVKKFMCAGTSPPLDHPHVFINMG-EENEKHCPYCSTLY 58
            +   +  C G    L HP V++ +  +     CPYC   Y
Sbjct: 9  KIVDKSRVACDGGEGALGHPRVWLQIPEDTGWVECPYCDCKY 50


>1vzy_A 33 kDa chaperonin; chaperone, heat shock protein, crystal
           engineering, molecular chaperone, redox-active center,
           PSI; 1.97A {Bacillus subtilis} SCOP: d.193.1.1 g.81.1.1
          Length = 291

 Score = 26.5 bits (58), Expect = 1.4
 Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 3/22 (13%)

Query: 43  MGEENEK---HCPYCSTLYHFD 61
           M EE+ +    C +C+  Y F 
Sbjct: 257 MIEEDGQAEAVCHFCNEKYLFT 278


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.3 bits (55), Expect = 3.4
 Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 30/61 (49%)

Query: 8   HFQNDRGHSRIKI----GVKKFMCAGTSPPLDHPHVFINMGEENEKHCPYCSTLYHFDSS 63
           H    +   +++I    G K  + +G  PP                      +LY  + +
Sbjct: 359 HLPAGK---QVEISLVNGAKNLVVSG--PP---------------------QSLYGLNLT 392

Query: 64  L 64
           L
Sbjct: 393 L 393


>1vq0_A 33 kDa chaperonin; TM1394, structural genomics, joint center for
           structural genomics, JCSG, protein structure initiative,
           PSI; HET: UNL; 2.20A {Thermotoga maritima} SCOP:
           d.193.1.1 g.81.1.1
          Length = 302

 Score = 25.4 bits (55), Expect = 3.4
 Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 2/21 (9%)

Query: 43  MGEEN--EKHCPYCSTLYHFD 61
           M +E   E  C +C+T Y F 
Sbjct: 265 MRKEGKGEVVCKWCNTRYVFS 285


>2bbz_A Viral CAsp8 and FADD-like apoptosis regulator; death effector
          domain, viral protein; 3.80A {Molluscum contagiosum
          virus subtype 1}
          Length = 249

 Score = 25.2 bits (55), Expect = 3.5
 Identities = 8/24 (33%), Positives = 9/24 (37%)

Query: 46 ENEKHCPYCSTLYHFDSSLDSKET 69
           + K  P    L H    LDS E 
Sbjct: 2  SDSKEVPSLPFLRHLLEELDSHED 25


>1i7f_A Heat shock protein 33; HSP33, redox sensitive molecular chaperone;
           2.70A {Escherichia coli} SCOP: d.193.1.1 PDB: 1xjh_A
          Length = 292

 Score = 25.4 bits (55), Expect = 3.6
 Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 3/23 (13%)

Query: 42  NMGEENEK---HCPYCSTLYHFD 61
           ++  E+ +   HC YC   Y F+
Sbjct: 251 SILAEDGEIDMHCDYCGNHYLFN 273


>2bbr_A Viral CAsp8 and FADD-like apoptosis regulator; viral protein;
          1.20A {Molluscum contagiosum virus subtype 1} PDB:
          2f1s_A
          Length = 195

 Score = 25.1 bits (55), Expect = 3.7
 Identities = 8/24 (33%), Positives = 9/24 (37%)

Query: 46 ENEKHCPYCSTLYHFDSSLDSKET 69
           + K  P    L H    LDS E 
Sbjct: 2  SDSKEVPSLPFLRHLLEELDSHED 25


>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein
           complex I, protein TRAN; 2.90A {Saccharomyces
           cerevisiae} PDB: 3mv3_A
          Length = 325

 Score = 24.6 bits (53), Expect = 6.1
 Identities = 6/34 (17%), Positives = 10/34 (29%), Gaps = 8/34 (23%)

Query: 26  MCAGTSPPLDHPHVFINMGEENEKHCPYCSTLYH 59
           +CA T       +  I     +    P   + Y 
Sbjct: 273 ICAAT-------YKPIYEDTPSVS-DPLTGSKYV 298


>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2
           protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2
           d.93.1.1 d.93.1.1 PDB: 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
          Length = 525

 Score = 23.8 bits (51), Expect = 8.3
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 32  PPLDHPHVFINMGEENEKHCPYC 54
            P DH  V ++ G+ NE    Y 
Sbjct: 283 LPFDHTRVVLHDGDPNEPVSDYI 305


>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR),
           beta-hairpin, alpha-solenoi transport protein; 2.60A
           {Bos taurus}
          Length = 320

 Score = 23.8 bits (51), Expect = 8.8
 Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 8/34 (23%)

Query: 26  MCAGTSPPLDHPHVFINMGEENEKHCPYCSTLYH 59
           +CA +  P       I  G+  EK CP     Y 
Sbjct: 264 ICAASYRP-------IYRGKPVEK-CPLSGACYS 289


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.322    0.140    0.461 

Gapped
Lambda     K      H
   0.267   0.0507    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 699,169
Number of extensions: 26846
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 22
Length of query: 78
Length of database: 5,693,230
Length adjustment: 47
Effective length of query: 31
Effective length of database: 4,553,762
Effective search space: 141166622
Effective search space used: 141166622
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.6 bits)