RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780167|ref|YP_003064580.1| hypothetical protein CLIBASIA_00250 [Candidatus Liberibacter asiaticus str. psy62] (78 letters) >2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str} Length = 87 Score = 104 bits (260), Expect = 6e-24 Identities = 46/77 (59%), Positives = 57/77 (74%) Query: 1 MVDHPIPHFQNDRGHSRIKIGVKKFMCAGTSPPLDHPHVFINMGEENEKHCPYCSTLYHF 60 M D+ IPHFQND G+ I+IGVK+FMC G + P DHPH+FI+MG +EK CPYCSTLY + Sbjct: 1 MADYNIPHFQNDLGYKIIEIGVKEFMCVGATQPFDHPHIFIDMGSTDEKICPYCSTLYRY 60 Query: 61 DSSLDSKETLPVGCLLS 77 D SL +T P GCL + Sbjct: 61 DPSLSYNQTNPTGCLYN 77 >2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2} Length = 80 Score = 52.2 bits (125), Expect = 3e-08 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%) Query: 18 IKIGVKKFMCAGTSPPLDHPHVFINMGEENEKH-CPYCSTLY 58 + + K C G L HP V++++ E C YC Y Sbjct: 22 VVVSTWKVACDGGEGALGHPRVWLSIPHETGFVECGYCDRRY 63 >2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi} Length = 67 Score = 49.1 bits (117), Expect = 3e-07 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%) Query: 18 IKIGVKKFMCAGTSPPLDHPHVFINMG-EENEKHCPYCSTLY 58 + + C G L HP V++ + + CPYC Y Sbjct: 9 KIVDKSRVACDGGEGALGHPRVWLQIPEDTGWVECPYCDCKY 50 >1vzy_A 33 kDa chaperonin; chaperone, heat shock protein, crystal engineering, molecular chaperone, redox-active center, PSI; 1.97A {Bacillus subtilis} SCOP: d.193.1.1 g.81.1.1 Length = 291 Score = 26.5 bits (58), Expect = 1.4 Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 3/22 (13%) Query: 43 MGEENEK---HCPYCSTLYHFD 61 M EE+ + C +C+ Y F Sbjct: 257 MIEEDGQAEAVCHFCNEKYLFT 278 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 25.3 bits (55), Expect = 3.4 Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 30/61 (49%) Query: 8 HFQNDRGHSRIKI----GVKKFMCAGTSPPLDHPHVFINMGEENEKHCPYCSTLYHFDSS 63 H + +++I G K + +G PP +LY + + Sbjct: 359 HLPAGK---QVEISLVNGAKNLVVSG--PP---------------------QSLYGLNLT 392 Query: 64 L 64 L Sbjct: 393 L 393 >1vq0_A 33 kDa chaperonin; TM1394, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: UNL; 2.20A {Thermotoga maritima} SCOP: d.193.1.1 g.81.1.1 Length = 302 Score = 25.4 bits (55), Expect = 3.4 Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 2/21 (9%) Query: 43 MGEEN--EKHCPYCSTLYHFD 61 M +E E C +C+T Y F Sbjct: 265 MRKEGKGEVVCKWCNTRYVFS 285 >2bbz_A Viral CAsp8 and FADD-like apoptosis regulator; death effector domain, viral protein; 3.80A {Molluscum contagiosum virus subtype 1} Length = 249 Score = 25.2 bits (55), Expect = 3.5 Identities = 8/24 (33%), Positives = 9/24 (37%) Query: 46 ENEKHCPYCSTLYHFDSSLDSKET 69 + K P L H LDS E Sbjct: 2 SDSKEVPSLPFLRHLLEELDSHED 25 >1i7f_A Heat shock protein 33; HSP33, redox sensitive molecular chaperone; 2.70A {Escherichia coli} SCOP: d.193.1.1 PDB: 1xjh_A Length = 292 Score = 25.4 bits (55), Expect = 3.6 Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 3/23 (13%) Query: 42 NMGEENEK---HCPYCSTLYHFD 61 ++ E+ + HC YC Y F+ Sbjct: 251 SILAEDGEIDMHCDYCGNHYLFN 273 >2bbr_A Viral CAsp8 and FADD-like apoptosis regulator; viral protein; 1.20A {Molluscum contagiosum virus subtype 1} PDB: 2f1s_A Length = 195 Score = 25.1 bits (55), Expect = 3.7 Identities = 8/24 (33%), Positives = 9/24 (37%) Query: 46 ENEKHCPYCSTLYHFDSSLDSKET 69 + K P L H LDS E Sbjct: 2 SDSKEVPSLPFLRHLLEELDSHED 25 >3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A Length = 325 Score = 24.6 bits (53), Expect = 6.1 Identities = 6/34 (17%), Positives = 10/34 (29%), Gaps = 8/34 (23%) Query: 26 MCAGTSPPLDHPHVFINMGEENEKHCPYCSTLYH 59 +CA T + I + P + Y Sbjct: 273 ICAAT-------YKPIYEDTPSVS-DPLTGSKYV 298 >2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2 protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2 d.93.1.1 d.93.1.1 PDB: 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A Length = 525 Score = 23.8 bits (51), Expect = 8.3 Identities = 8/23 (34%), Positives = 11/23 (47%) Query: 32 PPLDHPHVFINMGEENEKHCPYC 54 P DH V ++ G+ NE Y Sbjct: 283 LPFDHTRVVLHDGDPNEPVSDYI 305 >3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 320 Score = 23.8 bits (51), Expect = 8.8 Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 8/34 (23%) Query: 26 MCAGTSPPLDHPHVFINMGEENEKHCPYCSTLYH 59 +CA + P I G+ EK CP Y Sbjct: 264 ICAASYRP-------IYRGKPVEK-CPLSGACYS 289 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.140 0.461 Gapped Lambda K H 0.267 0.0507 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 699,169 Number of extensions: 26846 Number of successful extensions: 119 Number of sequences better than 10.0: 1 Number of HSP's gapped: 117 Number of HSP's successfully gapped: 22 Length of query: 78 Length of database: 5,693,230 Length adjustment: 47 Effective length of query: 31 Effective length of database: 4,553,762 Effective search space: 141166622 Effective search space used: 141166622 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 50 (23.6 bits)