HHsearch alignment for GI: 254780168 and conserved domain: TIGR01373

>TIGR01373 soxB sarcosine oxidase, beta subunit family; InterPro: IPR006278 These sequences represent the beta subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. The model is designated as subfamily rather than equivalog for this reason. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) forms that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=95.73  E-value=0.01  Score=37.11  Aligned_cols=166  Identities=18%  Similarity=0.137  Sum_probs=80.4

Q ss_pred             CEECCHHHHHHHHHHHHH-CCC-EEEEEECCC----CC---CCCCCEEEECHH-------HHHHHHHCCCHHHH------
Q ss_conf             387753899999999997-798-599995687----65---557713667888-------99999988994789------
Q gi|254780168|r    1 MIIGAGISGLTLAASLGH-RGI-QSCVLEKKD----QL---SDSGFGIQISPN-------ASRILKRIGILDQL------   58 (380)
Q Consensus         1 iIvGaG~aGl~~A~~L~~-~G~-~v~i~Er~~----~~---~~~g~gi~l~p~-------~~~~L~~lGi~~~~------   58 (380)
T Consensus        34 iIvGgGGHGLATAYYLA~~hGItnVAVlEKgwlGgGN~gRNTTivRSNYl~p~s~~~Ye~a~kLwe--GLs~dLNYNvM~  111 (407)
T TIGR01373        34 IIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIVRSNYLYPESAELYEHAMKLWE--GLSQDLNYNVMF  111 (407)
T ss_pred             EEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH--CHHHHCCHHHHH
T ss_conf             888688606899999886469406899850621688664342146541026452237888988861--200120200112


Q ss_pred             HHC-----CCCCCCEEE---------EECCCCCCCC------CCCCCCCCCCCCCCEE-EE------EECCHHHHHHHHH
Q ss_conf             862-----688430699---------9788544333------4554323444478247-86------2000134788997
Q gi|254780168|r   59 EDI-----WIEPEDFVF---------RSGSTLKELS------RFSCKNYSRNNWGGIY-GV------VKRHTLQKILLNH  111 (380)
Q Consensus        59 ~~~-----~~~~~~~~~---------~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~------i~r~~l~~~L~~~  111 (380)
T Consensus       112 SqRG~~nL~H~~~~~~~~~R~v~A~r~~GvDaELl~~~~v~~~~P~ld~s~daRfPv~Gg~~QrRgGtaRHDAVAWGYAR  191 (407)
T TIGR01373       112 SQRGVLNLAHSTADMDDYARRVNAMRLNGVDAELLSPEQVKRLIPILDFSKDARFPVVGGLLQRRGGTARHDAVAWGYAR  191 (407)
T ss_pred             HHHHHHHHCCCHHHHHHHCCCEEEEEECCCCHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCEEEHHHHHHHHH
T ss_conf             13323432188878764314100111036463206878999618811288888863005400137871021012221464


Q ss_pred             HHHCCCEEEEEEECCCCCC---CCCCCCCCC----EE-EEEEEEECCCCCCCHHHCCCCCCCCCC
Q ss_conf             3206872564210123443---211234531----03-568997436766312112853344311
Q gi|254780168|r  112 IQTQPLARLHLSTHITHPD---CTQISKINN----QK-PDLLVGADGLNSNIRHYIDTQPITFSG  168 (380)
Q Consensus       112 ~~~~~~~~~~~~~~v~~~~---~~~~~~~~~----~~-adlvIgADG~~S~vR~~l~~~~~~~~~  168 (380)
T Consensus       192 gAd~~GVdiIqncEvTg~~~~~~grv~GV~T~RG~IgA~kvgva~AG~ss~~a~~AG~rlPieSh  256 (407)
T TIGR01373       192 GADARGVDIIQNCEVTGFIRRENGRVIGVETTRGFIGAKKVGVAVAGNSSVVAELAGFRLPIESH  256 (407)
T ss_pred             HHHHCCCEEEECCCCCCEEEECCCEEEEEECCCCCCCCEEEEEEEECCHHHHHHHCCCCCCHHHH
T ss_conf             23005840322232023165068758865448741010378888717758989763742662110