HHsearch alignment for GI: 254780168 and conserved domain: TIGR01373
>TIGR01373 soxB sarcosine oxidase, beta subunit family; InterPro: IPR006278 These sequences represent the beta subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. The model is designated as subfamily rather than equivalog for this reason. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) forms that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=95.73 E-value=0.01 Score=37.11 Aligned_cols=166 Identities=18% Similarity=0.137 Sum_probs=80.4
Q ss_pred CEECCHHHHHHHHHHHHH-CCC-EEEEEECCC----CC---CCCCCEEEECHH-------HHHHHHHCCCHHHH------
Q ss_conf 387753899999999997-798-599995687----65---557713667888-------99999988994789------
Q gi|254780168|r 1 MIIGAGISGLTLAASLGH-RGI-QSCVLEKKD----QL---SDSGFGIQISPN-------ASRILKRIGILDQL------ 58 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~-~G~-~v~i~Er~~----~~---~~~g~gi~l~p~-------~~~~L~~lGi~~~~------ 58 (380)
T Consensus 34 iIvGgGGHGLATAYYLA~~hGItnVAVlEKgwlGgGN~gRNTTivRSNYl~p~s~~~Ye~a~kLwe--GLs~dLNYNvM~ 111 (407)
T TIGR01373 34 IIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIVRSNYLYPESAELYEHAMKLWE--GLSQDLNYNVMF 111 (407)
T ss_pred EEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH--CHHHHCCHHHHH
T ss_conf 888688606899999886469406899850621688664342146541026452237888988861--200120200112
Q ss_pred HHC-----CCCCCCEEE---------EECCCCCCCC------CCCCCCCCCCCCCCEE-EE------EECCHHHHHHHHH
Q ss_conf 862-----688430699---------9788544333------4554323444478247-86------2000134788997
Q gi|254780168|r 59 EDI-----WIEPEDFVF---------RSGSTLKELS------RFSCKNYSRNNWGGIY-GV------VKRHTLQKILLNH 111 (380)
Q Consensus 59 ~~~-----~~~~~~~~~---------~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~------i~r~~l~~~L~~~ 111 (380)
T Consensus 112 SqRG~~nL~H~~~~~~~~~R~v~A~r~~GvDaELl~~~~v~~~~P~ld~s~daRfPv~Gg~~QrRgGtaRHDAVAWGYAR 191 (407)
T TIGR01373 112 SQRGVLNLAHSTADMDDYARRVNAMRLNGVDAELLSPEQVKRLIPILDFSKDARFPVVGGLLQRRGGTARHDAVAWGYAR 191 (407)
T ss_pred HHHHHHHHCCCHHHHHHHCCCEEEEEECCCCHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCEEEHHHHHHHHH
T ss_conf 13323432188878764314100111036463206878999618811288888863005400137871021012221464
Q ss_pred HHHCCCEEEEEEECCCCCC---CCCCCCCCC----EE-EEEEEEECCCCCCCHHHCCCCCCCCCC
Q ss_conf 3206872564210123443---211234531----03-568997436766312112853344311
Q gi|254780168|r 112 IQTQPLARLHLSTHITHPD---CTQISKINN----QK-PDLLVGADGLNSNIRHYIDTQPITFSG 168 (380)
Q Consensus 112 ~~~~~~~~~~~~~~v~~~~---~~~~~~~~~----~~-adlvIgADG~~S~vR~~l~~~~~~~~~ 168 (380)
T Consensus 192 gAd~~GVdiIqncEvTg~~~~~~grv~GV~T~RG~IgA~kvgva~AG~ss~~a~~AG~rlPieSh 256 (407)
T TIGR01373 192 GADARGVDIIQNCEVTGFIRRENGRVIGVETTRGFIGAKKVGVAVAGNSSVVAELAGFRLPIESH 256 (407)
T ss_pred HHHHCCCEEEECCCCCCEEEECCCEEEEEECCCCCCCCEEEEEEEECCHHHHHHHCCCCCCHHHH
T ss_conf 23005840322232023165068758865448741010378888717758989763742662110