HHsearch alignment for GI: 254780168 and conserved domain: TIGR02374

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit; InterPro: IPR012744 This entry describes NirB, the large subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirD, the small subunit (IPR012748 from INTERPRO). In a few bacteria such as Klebsiella pneumoniae and in fungi, the two regions are fused.; GO: 0008942 nitrite reductase [NAD(P)H] activity, 0050660 FAD binding, 0050661 NADP binding, 0042128 nitrate assimilation.
Probab=97.32  E-value=0.00064  Score=45.38  Aligned_cols=102  Identities=20%  Similarity=0.264  Sum_probs=60.0

Q ss_pred             CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf             38775389999999999779859999568765557713667888999999889947898626884306999788544333
Q gi|254780168|r    1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELS   80 (380)
Q Consensus         1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (380)
T Consensus       151 aViGGGLLGLEAA~aL~~LG~~v~Vi~~~p~LM------------~~QLD~~a--G~lL~~~le~~G~~~l~Gt~k----  212 (813)
T TIGR02374       151 AVIGGGLLGLEAARALKNLGMDVSVIELAPFLM------------AKQLDQTA--GRLLQRELEKKGLTVLLGTEK----  212 (813)
T ss_pred             EEECCCHHHHHHHHHHHHCCCEEEHHHHHHHHH------------HHHHHHHH--HHHHHHHHHHCCCEEEECCCC----
T ss_conf             588674158899999987797064467648989------------99999999--999999998579579861761----


Q ss_pred             CCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCC
Q ss_conf             455432344447824786200013478899732068725642101234432112345310356899743676631
Q gi|254780168|r   81 RFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHPDCTQISKINNQKPDLLVGADGLNSNI  155 (380)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~adlvIgADG~~S~v  155 (380)
T Consensus       213 -----------------------------------~t~eiv~~~d~~~~~~~rf~DG~~l~aDlvv~A~GirP~~  252 (813)
T TIGR02374       213 -----------------------------------DTVEIVGEDDVEKVERLRFKDGSSLEADLVVFAAGIRPRD  252 (813)
T ss_pred             -----------------------------------CEEEEEECCCHHHHCEEECCCCCEEEECEEEEECCCCCCH
T ss_conf             -----------------------------------1057641564012312242389788703799951566636