HHsearch alignment for GI: 254780168 and conserved domain: TIGR02374
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit; InterPro: IPR012744 This entry describes NirB, the large subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirD, the small subunit (IPR012748 from INTERPRO). In a few bacteria such as Klebsiella pneumoniae and in fungi, the two regions are fused.; GO: 0008942 nitrite reductase [NAD(P)H] activity, 0050660 FAD binding, 0050661 NADP binding, 0042128 nitrate assimilation.
Probab=97.32 E-value=0.00064 Score=45.38 Aligned_cols=102 Identities=20% Similarity=0.264 Sum_probs=60.0
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 38775389999999999779859999568765557713667888999999889947898626884306999788544333
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELS 80 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
T Consensus 151 aViGGGLLGLEAA~aL~~LG~~v~Vi~~~p~LM------------~~QLD~~a--G~lL~~~le~~G~~~l~Gt~k---- 212 (813)
T TIGR02374 151 AVIGGGLLGLEAARALKNLGMDVSVIELAPFLM------------AKQLDQTA--GRLLQRELEKKGLTVLLGTEK---- 212 (813)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEHHHHHHHHH------------HHHHHHHH--HHHHHHHHHHCCCEEEECCCC----
T ss_conf 588674158899999987797064467648989------------99999999--999999998579579861761----
Q ss_pred CCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCC
Q ss_conf 455432344447824786200013478899732068725642101234432112345310356899743676631
Q gi|254780168|r 81 RFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHPDCTQISKINNQKPDLLVGADGLNSNI 155 (380)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~adlvIgADG~~S~v 155 (380)
T Consensus 213 -----------------------------------~t~eiv~~~d~~~~~~~rf~DG~~l~aDlvv~A~GirP~~ 252 (813)
T TIGR02374 213 -----------------------------------DTVEIVGEDDVEKVERLRFKDGSSLEADLVVFAAGIRPRD 252 (813)
T ss_pred -----------------------------------CEEEEEECCCHHHHCEEECCCCCEEEECEEEEECCCCCCH
T ss_conf -----------------------------------1057641564012312242389788703799951566636