HHsearch alignment for GI: 254780168 and conserved domain: TIGR02731
>TIGR02731 phytoene_desat phytoene desaturase; InterPro: IPR014102 Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme phytoene desaturase (also called phytoene dehydrogenase). This HMM does not include plant chloroplast transit peptides and the entry does not contain zeta-carotene desaturase, which is a closely related family in the same pathway..
Probab=96.99 E-value=0.0028 Score=40.97 Aligned_cols=84 Identities=33% Similarity=0.525 Sum_probs=57.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCC--------CC----CEE----EECHHHHHHHHHCCCHHHHHHCCCC
Q ss_conf 3877538999999999977985999956876555--------77----136----6788899999988994789862688
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSD--------SG----FGI----QISPNASRILKRIGILDQLEDIWIE 64 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~--------~g----~gi----~l~p~~~~~L~~lGi~~~~~~~~~~ 64 (380)
T Consensus 3 ~~aGaGlaGl~~akyl~daGh~Pi~~e~~~vlGG~vaaW~d~dGdW~etGlh~ffGayPn~~~l~~el~i~drlqW---k 79 (454)
T TIGR02731 3 AIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNILQLLKELNIEDRLQW---K 79 (454)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEECHHHCCCCEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHCCCHHHHHH---H
T ss_conf 7722745567788787635896268632100355023322478861131045543145789999986150222222---1
Q ss_pred CCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 43069997885443334554323
Q gi|254780168|r 65 PEDFVFRSGSTLKELSRFSCKNY 87 (380)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~ 87 (380)
T Consensus 80 ~h~~if~~~~~PG~~s~f~~P~~ 102 (454)
T TIGR02731 80 EHSLIFNQPDKPGTLSRFDFPDI 102 (454)
T ss_pred HHEEEEECCCCCCCCEECCCCCC
T ss_conf 10013404688874001047787