HHsearch alignment for GI: 254780168 and conserved domain: TIGR02731

>TIGR02731 phytoene_desat phytoene desaturase; InterPro: IPR014102 Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme phytoene desaturase (also called phytoene dehydrogenase). This HMM does not include plant chloroplast transit peptides and the entry does not contain zeta-carotene desaturase, which is a closely related family in the same pathway..
Probab=96.99  E-value=0.0028  Score=40.97  Aligned_cols=84  Identities=33%  Similarity=0.525  Sum_probs=57.3

Q ss_pred             CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCC--------CC----CEE----EECHHHHHHHHHCCCHHHHHHCCCC
Q ss_conf             3877538999999999977985999956876555--------77----136----6788899999988994789862688
Q gi|254780168|r    1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSD--------SG----FGI----QISPNASRILKRIGILDQLEDIWIE   64 (380)
Q Consensus         1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~--------~g----~gi----~l~p~~~~~L~~lGi~~~~~~~~~~   64 (380)
T Consensus         3 ~~aGaGlaGl~~akyl~daGh~Pi~~e~~~vlGG~vaaW~d~dGdW~etGlh~ffGayPn~~~l~~el~i~drlqW---k   79 (454)
T TIGR02731         3 AIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNILQLLKELNIEDRLQW---K   79 (454)
T ss_pred             EEECCCHHHHHHHHHHHHCCCCCEEEECHHHCCCCEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHCCCHHHHHH---H
T ss_conf             7722745567788787635896268632100355023322478861131045543145789999986150222222---1


Q ss_pred             CCCEEEEECCCCCCCCCCCCCCC
Q ss_conf             43069997885443334554323
Q gi|254780168|r   65 PEDFVFRSGSTLKELSRFSCKNY   87 (380)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~   87 (380)
T Consensus        80 ~h~~if~~~~~PG~~s~f~~P~~  102 (454)
T TIGR02731        80 EHSLIFNQPDKPGTLSRFDFPDI  102 (454)
T ss_pred             HHEEEEECCCCCCCCEECCCCCC
T ss_conf             10013404688874001047787