Query gi|254780168|ref|YP_003064581.1| monooxygenase FAD-binding protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 380
No_of_seqs 188 out of 6903
Neff 10.1
Searched_HMMs 39220
Date Mon May 23 00:14:08 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780168.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06475 salicylate hydroxylas 100.0 0 0 535.2 32.5 377 1-380 6-396 (400)
2 PRK08163 salicylate hydroxylas 100.0 0 0 530.2 32.1 377 1-380 8-392 (396)
3 TIGR03219 salicylate_mono sali 100.0 0 0 472.2 28.9 368 1-380 4-405 (414)
4 PRK06753 hypothetical protein; 100.0 0 0 467.5 32.2 359 1-377 4-372 (373)
5 PRK07588 hypothetical protein; 100.0 0 0 424.6 29.6 360 1-371 4-377 (391)
6 PRK06847 hypothetical protein; 100.0 0 0 416.4 30.0 342 1-355 8-362 (375)
7 PRK07538 hypothetical protein; 100.0 0 0 409.7 28.5 334 1-340 4-362 (413)
8 PRK07045 putative monooxygenas 100.0 0 0 394.8 31.0 350 1-365 9-380 (388)
9 PRK09126 hypothetical protein; 100.0 0 0 388.9 31.5 355 1-370 7-382 (392)
10 PRK07494 2-octaprenyl-6-methox 100.0 0 0 385.7 32.3 353 1-370 9-377 (386)
11 TIGR01988 Ubi-OHases Ubiquinon 100.0 0 0 388.4 28.2 357 1-370 3-438 (445)
12 PRK07608 hypothetical protein; 100.0 0 0 380.8 31.6 353 1-370 9-382 (389)
13 PRK07236 hypothetical protein; 100.0 0 0 387.2 26.0 331 1-347 10-378 (386)
14 PRK05732 2-octaprenyl-6-methox 100.0 0 0 380.0 31.3 355 1-370 7-384 (395)
15 PRK07364 2-octaprenyl-6-methox 100.0 0 0 378.9 30.4 355 1-370 21-395 (413)
16 COG0654 UbiH 2-polyprenyl-6-me 100.0 0 0 378.4 30.1 353 1-368 6-375 (387)
17 PRK07333 2-octaprenyl-6-methox 100.0 0 0 377.7 30.0 357 1-370 5-382 (403)
18 PRK05868 hypothetical protein; 100.0 0 0 379.4 27.9 332 1-341 5-349 (372)
19 PRK08948 consensus 100.0 0 0 377.6 27.6 355 1-370 4-381 (392)
20 PRK08020 ubiF 2-octaprenyl-3-m 100.0 0 0 372.8 30.9 353 1-370 9-383 (391)
21 PRK08773 2-octaprenyl-3-methyl 100.0 0 0 372.4 30.9 354 1-370 10-384 (392)
22 PRK08013 hypothetical protein; 100.0 0 0 371.7 31.1 356 1-370 7-384 (400)
23 PRK05714 2-octaprenyl-3-methyl 100.0 0 0 373.1 29.0 355 1-370 6-387 (405)
24 PRK06617 2-octaprenyl-6-methox 100.0 0 0 369.9 30.5 351 1-370 5-365 (374)
25 PRK08850 2-octaprenyl-6-methox 100.0 0 0 369.5 30.1 356 1-370 8-384 (405)
26 PRK06183 mhpA 3-(3-hydroxyphen 100.0 0 0 361.7 31.6 350 1-366 16-383 (554)
27 PRK08849 2-octaprenyl-3-methyl 100.0 0 0 361.4 30.0 353 1-370 7-376 (384)
28 PRK08774 consensus 100.0 0 0 361.2 30.0 355 1-370 8-382 (402)
29 PRK06185 hypothetical protein; 100.0 0 0 362.1 27.5 357 1-374 10-391 (409)
30 pfam01494 FAD_binding_3 FAD bi 100.0 0 0 358.0 29.4 326 1-337 5-349 (349)
31 PRK06996 hypothetical protein; 100.0 0 0 344.9 28.2 352 1-370 15-386 (397)
32 PRK06184 hypothetical protein; 100.0 0 0 342.6 27.5 326 1-343 10-355 (503)
33 PRK08244 hypothetical protein; 100.0 0 0 339.7 28.0 341 1-360 6-360 (494)
34 PRK08132 hypothetical protein; 100.0 0 0 339.1 28.1 353 1-370 27-398 (549)
35 TIGR01984 UbiH 2-polyprenyl-6- 100.0 0 0 344.6 22.8 355 1-369 3-417 (425)
36 PRK06126 hypothetical protein; 100.0 0 0 336.7 27.1 332 1-344 11-375 (545)
37 PRK06834 hypothetical protein; 100.0 1.4E-45 0 331.6 30.6 337 1-363 7-356 (488)
38 PRK07190 hypothetical protein; 100.0 1.4E-45 0 332.7 29.1 322 1-342 9-345 (480)
39 PRK08294 phenol 2-monooxygenas 100.0 2.8E-45 0 328.4 28.9 343 1-346 36-414 (634)
40 KOG2614 consensus 100.0 2.2E-44 0 323.0 20.2 335 1-350 6-381 (420)
41 PRK08243 4-hydroxybenzoate 3-m 100.0 1.5E-40 4.2E-45 296.7 28.2 346 1-366 6-376 (392)
42 TIGR01989 COQ6 Ubiquinone bios 100.0 6.4E-41 1.4E-45 299.2 19.8 358 1-370 4-479 (481)
43 PRK08255 salicylyl-CoA 5-hydro 100.0 8.9E-38 2.3E-42 277.6 23.7 349 1-376 4-382 (770)
44 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 7.9E-31 2E-35 229.9 15.3 323 2-345 7-354 (393)
45 PRK11445 putative oxidoreducta 100.0 2.4E-26 6.2E-31 199.1 25.7 289 1-324 5-311 (348)
46 KOG3855 consensus 100.0 3.7E-28 9.4E-33 211.6 14.6 358 1-370 40-472 (481)
47 KOG1298 consensus 100.0 4.5E-26 1.1E-30 197.3 22.3 332 1-346 49-403 (509)
48 TIGR02023 BchP-ChlP geranylger 100.0 1.5E-26 3.8E-31 200.6 19.0 333 1-363 4-371 (408)
49 TIGR02032 GG-red-SF geranylger 100.0 1.5E-26 3.9E-31 200.5 17.8 296 1-309 4-342 (343)
50 COG0644 FixC Dehydrogenases (f 99.9 1.1E-24 2.8E-29 187.8 24.0 303 1-334 7-330 (396)
51 PRK10157 putative oxidoreducta 99.9 9.5E-25 2.4E-29 188.3 23.5 312 1-326 9-352 (428)
52 PRK10015 hypothetical protein; 99.9 1E-23 2.6E-28 181.2 21.7 310 1-325 9-351 (429)
53 TIGR02028 ChlP geranylgeranyl 99.8 1E-19 2.7E-24 153.7 15.7 330 2-368 5-369 (401)
54 pfam04820 Trp_halogenase Trypt 99.8 4E-15 1E-19 122.2 25.4 311 1-336 3-380 (457)
55 pfam05834 Lycopene_cycl Lycope 99.7 8.8E-14 2.2E-18 113.0 22.9 274 1-314 3-292 (374)
56 pfam08491 SE Squalene epoxidas 99.6 1.1E-14 2.7E-19 119.3 14.3 207 142-359 2-221 (276)
57 TIGR01790 carotene-cycl lycope 99.6 4.1E-14 1E-18 115.3 15.6 304 1-338 3-361 (419)
58 PRK12409 D-amino acid dehydrog 99.2 2.1E-08 5.4E-13 76.1 19.5 195 99-313 194-406 (410)
59 PRK00711 D-amino acid dehydrog 99.1 2.1E-09 5.3E-14 83.0 12.1 32 1-32 4-35 (416)
60 PRK01747 mnmC 5-methylaminomet 99.1 1.7E-08 4.4E-13 76.8 16.7 33 1-33 260-292 (660)
61 TIGR01789 lycopene_cycl lycope 99.1 2.8E-09 7.1E-14 82.2 12.1 301 1-339 3-335 (392)
62 PRK11259 solA N-methyltryptoph 99.1 6.7E-09 1.7E-13 79.6 13.7 153 1-154 7-205 (377)
63 TIGR02352 thiamin_ThiO glycine 98.9 1.2E-07 3.1E-12 70.9 15.5 237 1-251 2-298 (357)
64 pfam01946 Thi4 Thi4 family. Th 98.8 6.8E-08 1.7E-12 72.7 10.8 122 1-156 21-167 (229)
65 PRK04176 ribulose-1,5-biphosph 98.8 4.1E-08 1E-12 74.1 9.0 125 1-159 29-179 (257)
66 PRK11728 hypothetical protein; 98.8 5.1E-08 1.3E-12 73.5 9.2 159 1-162 6-215 (400)
67 pfam01266 DAO FAD dependent ox 98.8 8.6E-08 2.2E-12 71.9 9.5 158 1-161 3-211 (309)
68 COG2081 Predicted flavoprotein 98.7 1.6E-08 4.1E-13 77.0 5.5 135 1-155 7-169 (408)
69 COG0665 DadA Glycine/D-amino a 98.7 4E-06 1E-10 60.5 16.3 155 1-156 8-215 (387)
70 TIGR00292 TIGR00292 thiazole b 98.7 2.6E-08 6.7E-13 75.5 5.0 97 1-130 25-130 (283)
71 TIGR03329 Phn_aa_oxid putative 98.7 4.5E-06 1.2E-10 60.1 16.2 30 1-30 28-59 (460)
72 pfam03486 HI0933_like HI0933-l 98.7 6.9E-08 1.8E-12 72.6 6.5 132 1-154 4-165 (405)
73 pfam00743 FMO-like Flavin-bind 98.6 3.2E-07 8E-12 68.1 9.4 132 1-155 5-152 (532)
74 KOG2415 consensus 98.6 2.1E-06 5.5E-11 62.4 12.8 146 1-159 80-262 (621)
75 TIGR02733 desat_CrtD C-3',4' d 98.6 4.4E-08 1.1E-12 73.9 3.9 54 1-54 5-75 (499)
76 PRK07233 hypothetical protein; 98.6 1.5E-07 3.9E-12 70.3 6.5 58 1-58 3-75 (430)
77 TIGR03364 HpnW_proposed FAD de 98.6 6.7E-07 1.7E-11 65.8 9.6 154 1-154 4-198 (365)
78 TIGR03467 HpnE squalene-associ 98.6 2.2E-07 5.7E-12 69.1 6.9 57 1-57 2-75 (430)
79 TIGR01317 GOGAT_sm_gam glutama 98.5 7.7E-08 2E-12 72.3 4.1 82 2-89 156-244 (517)
80 PRK13369 glycerol-3-phosphate 98.5 2.3E-05 5.9E-10 55.3 16.7 53 1-53 10-63 (503)
81 COG0579 Predicted dehydrogenas 98.5 9.4E-07 2.4E-11 64.8 9.1 162 1-163 7-222 (429)
82 COG1635 THI4 Ribulose 1,5-bisp 98.5 2.6E-07 6.6E-12 68.7 5.7 54 1-54 34-94 (262)
83 TIGR02734 crtI_fam phytoene de 98.5 1.1E-07 2.7E-12 71.3 3.4 65 1-65 2-83 (526)
84 KOG1399 consensus 98.4 7.8E-07 2E-11 65.4 7.3 132 1-153 10-153 (448)
85 PRK12771 putative glutamate sy 98.4 2.4E-07 6E-12 68.9 4.4 32 2-33 142-173 (560)
86 PRK11883 protoporphyrinogen ox 98.4 4.2E-07 1.1E-11 67.2 5.6 59 1-59 4-79 (452)
87 pfam07992 Pyr_redox_2 Pyridine 98.4 1.3E-06 3.3E-11 63.8 8.1 30 1-30 3-32 (277)
88 PRK12814 putative NADPH-depend 98.4 2.7E-07 6.8E-12 68.6 4.5 32 2-33 198-229 (652)
89 PRK12810 gltD glutamate syntha 98.4 2.7E-07 6.9E-12 68.5 4.5 32 2-33 148-179 (472)
90 PRK11749 putative oxidoreducta 98.4 2.8E-07 7E-12 68.5 4.5 33 1-33 144-176 (460)
91 PRK12831 putative oxidoreducta 98.4 2.9E-07 7.4E-12 68.3 4.4 32 2-33 145-176 (464)
92 PRK13984 putative oxidoreducta 98.4 3.3E-07 8.4E-12 67.9 4.4 53 2-54 288-348 (604)
93 PRK12809 putative oxidoreducta 98.4 3.7E-07 9.5E-12 67.6 4.4 53 2-54 315-375 (639)
94 TIGR03315 Se_ygfK putative sel 98.4 4.1E-07 1E-11 67.3 4.4 32 2-33 542-573 (1012)
95 PRK09853 putative selenate red 98.4 4.6E-07 1.2E-11 66.9 4.4 32 2-33 555-586 (1032)
96 PRK12769 putative oxidoreducta 98.4 4.8E-07 1.2E-11 66.8 4.4 53 2-54 332-392 (654)
97 PRK07208 hypothetical protein; 98.3 5.4E-07 1.4E-11 66.5 4.4 33 1-33 7-39 (474)
98 TIGR03140 AhpF alkyl hydropero 98.3 3.5E-06 9E-11 60.9 8.5 107 1-161 216-328 (515)
99 pfam01593 Amino_oxidase Flavin 98.3 0.00019 4.9E-09 48.9 17.4 51 7-57 1-66 (444)
100 COG2072 TrkA Predicted flavopr 98.3 5E-06 1.3E-10 59.8 9.2 33 1-33 12-45 (443)
101 COG0578 GlpA Glycerol-3-phosph 98.3 6.3E-05 1.6E-09 52.3 14.8 54 1-54 16-70 (532)
102 PRK12778 putative bifunctional 98.3 6.7E-07 1.7E-11 65.8 4.5 53 2-54 444-504 (760)
103 PRK12266 glpD glycerol-3-phosp 98.3 0.00014 3.7E-09 49.8 16.4 53 1-53 10-63 (503)
104 COG1233 Phytoene dehydrogenase 98.3 8E-07 2E-11 65.3 4.6 33 1-33 7-39 (487)
105 pfam01134 GIDA Glucose inhibit 98.3 2.3E-06 5.9E-11 62.1 6.9 139 1-156 3-155 (391)
106 TIGR01316 gltA glutamate synth 98.3 9.5E-07 2.4E-11 64.8 4.2 53 2-54 147-207 (462)
107 COG1232 HemY Protoporphyrinoge 98.2 5E-06 1.3E-10 59.8 7.3 59 1-59 4-79 (444)
108 PRK05249 soluble pyridine nucl 98.2 8.6E-06 2.2E-10 58.2 8.3 32 1-32 10-41 (465)
109 KOG2820 consensus 98.2 0.00019 4.7E-09 49.1 14.1 160 1-161 11-222 (399)
110 PRK12770 putative glutamate sy 98.1 2.5E-06 6.4E-11 61.9 4.2 33 1-33 21-53 (350)
111 COG3349 Uncharacterized conser 98.1 4.4E-06 1.1E-10 60.2 5.5 57 1-57 4-76 (485)
112 PRK11101 glpA sn-glycerol-3-ph 98.1 0.00016 4E-09 49.6 13.4 30 1-30 9-38 (545)
113 COG0492 TrxB Thioredoxin reduc 98.1 2.3E-05 5.8E-10 55.3 8.9 29 1-29 7-36 (305)
114 PRK06292 dihydrolipoamide dehy 98.1 4.6E-06 1.2E-10 60.1 5.2 30 1-30 7-36 (460)
115 PRK12416 protoporphyrinogen ox 98.1 6E-06 1.5E-10 59.3 5.7 60 1-60 5-85 (466)
116 TIGR01318 gltD_gamma_fam gluta 98.1 2.3E-06 5.8E-11 62.2 3.4 50 2-54 148-208 (480)
117 PRK12775 putative trifunctiona 98.1 4.1E-06 1E-10 60.4 4.3 53 2-54 437-497 (993)
118 KOG0029 consensus 98.1 4.4E-06 1.1E-10 60.2 4.3 33 1-33 19-51 (501)
119 PRK05976 dihydrolipoamide dehy 98.1 3.7E-05 9.5E-10 53.8 8.9 30 1-30 8-37 (464)
120 PRK12779 putative bifunctional 98.1 5E-06 1.3E-10 59.8 4.3 53 2-54 311-371 (944)
121 TIGR03143 AhpF_homolog putativ 98.0 4.9E-06 1.3E-10 59.9 4.2 30 1-30 8-37 (555)
122 PRK06416 dihydrolipoamide dehy 98.0 3.7E-05 9.5E-10 53.8 7.8 30 1-30 8-37 (462)
123 TIGR01812 sdhA_frdA_Gneg succi 98.0 3.1E-05 8E-10 54.4 7.3 178 1-182 3-260 (636)
124 PRK10262 thioredoxin reductase 98.0 7.6E-06 1.9E-10 58.6 4.1 30 1-30 10-39 (321)
125 PRK06115 dihydrolipoamide dehy 97.9 6.9E-05 1.8E-09 52.0 8.3 32 1-32 7-38 (466)
126 TIGR01292 TRX_reduct thioredox 97.9 1.1E-05 2.8E-10 57.5 4.0 120 1-169 4-134 (321)
127 TIGR01377 soxA_mon sarcosine o 97.9 0.0025 6.5E-08 41.3 15.7 205 1-208 4-270 (401)
128 COG1148 HdrA Heterodisulfide r 97.9 1.6E-05 4.2E-10 56.3 4.4 33 1-33 128-160 (622)
129 PRK04965 nitric oxide reductas 97.9 0.0001 2.6E-09 50.8 8.1 32 1-32 6-39 (378)
130 TIGR00031 UDP-GALP_mutase UDP- 97.9 1.9E-05 4.8E-10 55.9 4.3 52 1-52 5-72 (390)
131 PRK06175 L-aspartate oxidase; 97.9 0.0003 7.6E-09 47.7 10.4 146 1-155 8-191 (433)
132 PRK06370 mercuric reductase; V 97.8 2.1E-05 5.4E-10 55.5 4.4 30 1-30 8-37 (459)
133 KOG2852 consensus 97.8 0.0011 2.8E-08 43.8 12.8 151 1-153 14-208 (380)
134 COG3380 Predicted NAD/FAD-depe 97.8 2.5E-05 6.4E-10 55.0 4.4 32 1-32 5-36 (331)
135 PRK07251 pyridine nucleotide-d 97.8 2.4E-05 6.2E-10 55.1 4.4 31 1-31 7-37 (438)
136 COG1249 Lpd Pyruvate/2-oxoglut 97.8 0.00015 3.9E-09 49.6 8.1 143 1-158 8-152 (454)
137 PRK06467 dihydrolipoamide dehy 97.8 3.1E-05 8E-10 54.4 4.4 32 1-32 8-39 (472)
138 PRK09077 L-aspartate oxidase; 97.8 0.00031 7.9E-09 47.5 9.2 32 1-33 12-43 (535)
139 KOG3923 consensus 97.8 0.0028 7E-08 41.0 14.0 225 1-251 7-275 (342)
140 PRK06327 dihydrolipoamide dehy 97.7 4.1E-05 1E-09 53.6 4.5 32 1-32 8-39 (475)
141 PRK07843 3-ketosteroid-delta-1 97.7 2.8E-05 7.1E-10 54.7 3.6 32 1-32 9-40 (560)
142 PRK07845 flavoprotein disulfid 97.7 4.6E-05 1.2E-09 53.2 4.4 30 1-30 5-34 (467)
143 TIGR01350 lipoamide_DH dihydro 97.7 4.9E-05 1.2E-09 53.1 4.4 130 1-158 5-150 (481)
144 PRK05192 tRNA uridine 5-carbox 97.7 0.00026 6.7E-09 48.0 8.1 137 1-153 10-159 (621)
145 KOG2853 consensus 97.7 0.0026 6.7E-08 41.2 13.2 34 1-34 90-127 (509)
146 TIGR01372 soxA sarcosine oxida 97.7 5.1E-05 1.3E-09 52.9 4.4 32 1-32 180-211 (1026)
147 PRK12839 hypothetical protein; 97.7 4.9E-05 1.3E-09 53.0 4.2 33 1-33 13-45 (574)
148 PRK12844 3-ketosteroid-delta-1 97.7 5.9E-05 1.5E-09 52.5 4.5 33 1-33 10-42 (552)
149 PRK06912 acoL dihydrolipoamide 97.7 5.4E-05 1.4E-09 52.7 4.2 30 1-30 4-33 (458)
150 PRK12845 3-ketosteroid-delta-1 97.7 4.2E-05 1.1E-09 53.5 3.5 32 1-33 20-51 (566)
151 PRK12842 putative succinate de 97.6 7.2E-05 1.8E-09 51.9 4.5 33 1-33 9-41 (567)
152 pfam00890 FAD_binding_2 FAD bi 97.6 7.6E-05 1.9E-09 51.7 4.5 32 1-32 3-34 (401)
153 PRK06134 putative FAD-binding 97.6 7.7E-05 2E-09 51.7 4.5 33 1-33 14-46 (579)
154 PRK07818 dihydrolipoamide dehy 97.6 7.2E-05 1.8E-09 51.9 4.3 30 1-30 8-37 (467)
155 PRK06481 fumarate reductase fl 97.6 7.8E-05 2E-09 51.7 4.5 33 1-33 64-96 (506)
156 PRK06116 glutathione reductase 97.6 7.7E-05 2E-09 51.7 4.4 30 1-30 8-37 (450)
157 COG0493 GltD NADPH-dependent g 97.6 5.8E-05 1.5E-09 52.5 3.7 53 2-54 128-188 (457)
158 PRK08010 pyridine nucleotide-d 97.6 8.2E-05 2.1E-09 51.5 4.4 31 1-31 7-37 (441)
159 PRK12843 putative FAD-binding 97.6 8.7E-05 2.2E-09 51.3 4.5 33 1-33 18-50 (576)
160 PRK12835 3-ketosteroid-delta-1 97.6 9E-05 2.3E-09 51.2 4.5 32 1-32 15-46 (584)
161 PTZ00306 NADH-dependent fumara 97.6 7.8E-05 2E-09 51.6 4.1 33 1-33 413-445 (1167)
162 PRK07395 L-aspartate oxidase; 97.6 0.00072 1.8E-08 45.0 8.8 146 1-155 14-200 (556)
163 PRK07121 hypothetical protein; 97.6 0.00011 2.7E-09 50.7 4.5 32 1-32 24-55 (491)
164 COG1231 Monoamine oxidase [Ami 97.6 9.8E-05 2.5E-09 51.0 4.3 33 1-33 11-43 (450)
165 COG0562 Glf UDP-galactopyranos 97.5 0.00011 2.8E-09 50.6 4.4 33 1-33 5-37 (374)
166 PTZ00139 succinate dehydrogena 97.5 0.00013 3.4E-09 50.0 4.5 33 1-33 38-70 (622)
167 TIGR03197 MnmC_Cterm tRNA U-34 97.5 0.007 1.8E-07 38.2 13.2 55 99-155 132-192 (381)
168 TIGR00137 gid gid protein; Int 97.5 0.00011 2.7E-09 50.7 3.9 109 1-126 4-121 (444)
169 PRK08274 tricarballylate dehyd 97.5 0.00013 3.2E-09 50.2 4.2 31 1-31 8-38 (456)
170 PRK12837 3-ketosteroid-delta-1 97.5 0.00012 3.2E-09 50.3 3.9 32 1-33 13-44 (515)
171 TIGR03378 glycerol3P_GlpB glyc 97.5 0.00015 3.7E-09 49.8 4.2 30 1-30 4-33 (419)
172 TIGR02485 CobZ_N-term precorri 97.5 0.00013 3.3E-09 50.1 3.9 170 1-175 5-217 (467)
173 PRK05329 anaerobic glycerol-3- 97.4 0.00018 4.6E-09 49.1 4.4 30 1-30 6-35 (425)
174 PRK06452 sdhA succinate dehydr 97.4 0.0002 5.1E-09 48.8 4.6 32 1-32 9-40 (566)
175 PRK07512 L-aspartate oxidase; 97.4 0.0016 4E-08 42.7 9.1 29 1-31 13-41 (507)
176 PRK07057 sdhA succinate dehydr 97.4 0.00021 5.3E-09 48.7 4.5 33 1-33 16-48 (591)
177 PRK09754 phenylpropionate diox 97.4 0.00039 9.8E-09 46.9 5.7 32 1-32 7-40 (400)
178 PRK08626 fumarate reductase fl 97.4 0.00022 5.6E-09 48.6 4.5 33 1-33 9-41 (657)
179 PRK07804 L-aspartate oxidase; 97.4 0.00019 4.9E-09 49.0 4.2 32 1-32 19-50 (533)
180 PRK12834 putative FAD-binding 97.4 0.00021 5.2E-09 48.8 4.2 31 1-31 6-36 (549)
181 PRK07803 sdhA succinate dehydr 97.4 0.0002 5.2E-09 48.8 4.2 32 1-32 12-43 (631)
182 PRK08641 sdhA succinate dehydr 97.4 0.00024 6.1E-09 48.3 4.4 33 1-33 7-39 (589)
183 PRK08958 sdhA succinate dehydr 97.4 0.00026 6.7E-09 48.0 4.6 31 1-31 11-41 (588)
184 pfam00070 Pyr_redox Pyridine n 97.4 0.00026 6.5E-09 48.1 4.5 33 1-33 3-35 (82)
185 TIGR01813 flavo_cyto_c flavocy 97.4 0.0002 5E-09 48.9 3.8 33 1-33 3-36 (487)
186 PRK02106 choline dehydrogenase 97.3 0.00022 5.5E-09 48.6 3.8 29 1-29 9-38 (555)
187 PRK13748 putative mercuric red 97.3 0.00032 8.1E-09 47.5 4.4 30 1-30 102-131 (561)
188 TIGR02374 nitri_red_nirB nitri 97.3 0.00064 1.6E-08 45.4 5.9 102 1-155 151-252 (813)
189 PRK09078 sdhA succinate dehydr 97.3 0.00028 7.2E-09 47.8 4.1 31 1-31 16-46 (598)
190 PRK09564 coenzyme A disulfide 97.3 0.00033 8.5E-09 47.3 4.4 33 1-33 4-38 (443)
191 PTZ00052 thioredoxin reductase 97.3 0.00035 8.8E-09 47.2 4.2 30 1-30 45-74 (541)
192 KOG1276 consensus 97.3 0.0006 1.5E-08 45.6 5.4 61 1-61 15-96 (491)
193 TIGR03452 mycothione_red mycot 97.3 0.00096 2.4E-08 44.2 6.4 133 1-155 6-145 (452)
194 PRK07573 sdhA succinate dehydr 97.2 0.00039 1E-08 46.8 4.2 32 1-32 37-68 (638)
195 TIGR03385 CoA_CoA_reduc CoA-di 97.2 0.00054 1.4E-08 45.9 4.9 32 1-32 141-172 (427)
196 PRK08401 L-aspartate oxidase; 97.2 0.00051 1.3E-08 46.1 4.4 31 1-31 5-35 (464)
197 PRK08275 putative oxidoreducta 97.2 0.00061 1.5E-08 45.5 4.6 33 1-33 13-47 (554)
198 PRK09231 fumarate reductase fl 97.2 0.00063 1.6E-08 45.4 4.5 32 1-32 8-41 (582)
199 PRK07845 flavoprotein disulfid 97.1 0.0086 2.2E-07 37.6 10.2 32 1-32 182-213 (467)
200 COG1053 SdhA Succinate dehydro 97.1 0.00065 1.7E-08 45.3 4.3 33 1-33 10-42 (562)
201 PRK06854 adenylylsulfate reduc 97.1 0.00082 2.1E-08 44.7 4.5 32 1-32 15-48 (610)
202 KOG2665 consensus 97.1 0.0033 8.3E-08 40.5 7.4 48 1-48 52-110 (453)
203 PRK06069 sdhA succinate dehydr 97.0 0.00099 2.5E-08 44.1 4.6 33 1-33 9-44 (582)
204 PRK13339 malate:quinone oxidor 97.0 0.012 3.1E-07 36.7 9.9 161 1-161 10-256 (497)
205 TIGR02731 phytoene_desat phyto 97.0 0.0028 7.2E-08 41.0 6.5 84 1-87 3-102 (454)
206 pfam06039 Mqo Malate:quinone o 97.0 0.018 4.5E-07 35.5 10.6 161 1-161 8-254 (489)
207 PRK09754 phenylpropionate diox 97.0 0.0012 3.2E-08 43.4 4.7 32 1-32 148-179 (400)
208 KOG0685 consensus 97.0 0.0011 2.8E-08 43.8 4.4 33 1-33 25-58 (498)
209 COG2303 BetA Choline dehydroge 97.0 0.00092 2.4E-08 44.3 4.0 30 1-30 11-40 (542)
210 COG3075 GlpB Anaerobic glycero 97.0 0.00099 2.5E-08 44.1 4.0 30 1-30 6-35 (421)
211 PRK09564 coenzyme A disulfide 96.9 0.0017 4.3E-08 42.5 5.0 46 1-50 153-198 (443)
212 COG2907 Predicted NAD/FAD-bind 96.9 0.0015 3.9E-08 42.8 4.7 54 2-56 13-86 (447)
213 PRK13512 coenzyme A disulfide 96.9 0.0015 3.8E-08 42.8 4.5 34 1-34 5-40 (438)
214 PRK09897 hypothetical protein; 96.9 0.0053 1.3E-07 39.1 7.3 141 2-155 6-168 (535)
215 PRK05335 tRNA (uracil-5-)-meth 96.9 0.0012 3.1E-08 43.4 4.0 96 1-124 7-122 (434)
216 TIGR01350 lipoamide_DH dihydro 96.9 0.0017 4.2E-08 42.5 4.6 34 1-34 182-215 (481)
217 PRK05945 sdhA succinate dehydr 96.9 0.0016 4.1E-08 42.6 4.4 33 1-33 7-41 (575)
218 KOG0399 consensus 96.9 0.0012 3E-08 43.5 3.7 32 2-33 1790-1821(2142)
219 COG0446 HcaD Uncharacterized N 96.8 0.0037 9.5E-08 40.1 5.8 33 1-33 2-36 (415)
220 KOG1335 consensus 96.7 0.0047 1.2E-07 39.5 6.1 32 1-32 43-74 (506)
221 PRK05976 dihydrolipoamide dehy 96.7 0.003 7.6E-08 40.8 5.0 32 1-32 179-210 (464)
222 COG0445 GidA Flavin-dependent 96.7 0.0027 6.9E-08 41.1 4.8 139 1-155 8-160 (621)
223 PRK13512 coenzyme A disulfide 96.7 0.0021 5.2E-08 41.9 4.1 32 1-32 152-183 (438)
224 PRK07251 pyridine nucleotide-d 96.7 0.0035 8.9E-08 40.3 5.2 33 1-33 161-193 (438)
225 TIGR02730 carot_isom carotene 96.7 0.0014 3.4E-08 43.2 3.1 29 1-29 4-32 (506)
226 PRK06115 dihydrolipoamide dehy 96.7 0.0044 1.1E-07 39.6 5.7 32 1-32 178-209 (466)
227 TIGR03452 mycothione_red mycot 96.7 0.0042 1.1E-07 39.8 5.6 33 1-33 173-205 (452)
228 COG0569 TrkA K+ transport syst 96.7 0.0029 7.4E-08 40.9 4.7 55 1-55 4-65 (225)
229 PRK06263 sdhA succinate dehydr 96.7 0.0023 6E-08 41.5 4.0 30 1-31 11-40 (539)
230 COG1249 Lpd Pyruvate/2-oxoglut 96.6 0.006 1.5E-07 38.7 6.1 34 1-34 177-210 (454)
231 PRK08205 sdhA succinate dehydr 96.6 0.0021 5.3E-08 41.9 3.6 31 1-32 9-39 (583)
232 PRK06416 dihydrolipoamide dehy 96.6 0.0049 1.2E-07 39.3 5.5 30 2-31 177-206 (462)
233 PRK07818 dihydrolipoamide dehy 96.6 0.004 1E-07 39.9 5.0 32 1-32 176-207 (467)
234 PRK08071 L-aspartate oxidase; 96.6 0.0022 5.5E-08 41.8 3.6 32 1-33 7-38 (510)
235 PRK08010 pyridine nucleotide-d 96.6 0.0043 1.1E-07 39.7 5.1 33 1-33 162-194 (441)
236 PRK06327 dihydrolipoamide dehy 96.6 0.0039 9.9E-08 40.0 4.9 30 2-31 188-217 (475)
237 TIGR03169 Nterm_to_SelD pyridi 96.6 0.0024 6.2E-08 41.4 3.8 33 1-33 3-38 (364)
238 PRK07846 mycothione/glutathion 96.6 0.005 1.3E-07 39.2 5.4 28 1-30 5-32 (453)
239 COG3573 Predicted oxidoreducta 96.6 0.0033 8.5E-08 40.5 4.5 33 1-33 9-41 (552)
240 TIGR02732 zeta_caro_desat caro 96.6 0.003 7.6E-08 40.8 4.0 59 2-60 4-78 (474)
241 KOG1800 consensus 96.5 0.0029 7.4E-08 40.9 3.9 32 2-33 25-58 (468)
242 KOG2844 consensus 96.5 0.014 3.7E-07 36.1 7.4 164 1-165 43-256 (856)
243 PRK06912 acoL dihydrolipoamide 96.5 0.0044 1.1E-07 39.6 4.7 33 1-33 174-206 (458)
244 COG1206 Gid NAD(FAD)-utilizing 96.5 0.0026 6.6E-08 41.2 3.5 107 1-124 7-122 (439)
245 PRK06370 mercuric reductase; V 96.5 0.0064 1.6E-07 38.5 5.4 32 1-32 174-205 (459)
246 COG4529 Uncharacterized protei 96.5 0.004 1E-07 39.9 4.3 40 1-43 5-47 (474)
247 TIGR00551 nadB L-aspartate oxi 96.5 0.0023 6E-08 41.5 3.1 149 1-158 6-211 (546)
248 PTZ00188 adrenodoxin reductase 96.4 0.0041 1E-07 39.9 4.0 31 2-32 44-75 (506)
249 PRK06292 dihydrolipoamide dehy 96.4 0.011 2.7E-07 37.0 5.9 30 2-31 174-203 (460)
250 PRK06467 dihydrolipoamide dehy 96.4 0.01 2.6E-07 37.1 5.8 33 1-33 178-210 (472)
251 PRK06116 glutathione reductase 96.4 0.0075 1.9E-07 38.1 5.1 17 137-153 127-143 (450)
252 TIGR01811 sdhA_Bsu succinate d 96.4 0.0041 1E-07 39.9 3.8 33 1-33 2-34 (620)
253 PRK13800 putative oxidoreducta 96.4 0.0044 1.1E-07 39.6 3.8 32 1-32 17-48 (894)
254 PRK13748 putative mercuric red 96.3 0.0099 2.5E-07 37.2 5.3 31 125-155 212-246 (561)
255 PRK07846 mycothione/glutathion 96.2 0.0057 1.5E-07 38.9 3.9 33 1-33 172-204 (453)
256 COG0029 NadB Aspartate oxidase 96.2 0.0035 9E-08 40.3 2.7 142 1-156 11-199 (518)
257 PRK09496 trkA potassium transp 96.1 0.0063 1.6E-07 38.6 3.6 54 1-54 4-63 (455)
258 PRK05249 soluble pyridine nucl 96.1 0.0076 1.9E-07 38.0 4.0 22 134-155 254-275 (465)
259 PTZ00052 thioredoxin reductase 96.0 0.016 4E-07 35.9 5.3 15 139-153 182-196 (541)
260 pfam02737 3HCDH_N 3-hydroxyacy 96.0 0.0081 2.1E-07 37.8 3.9 31 2-32 4-34 (180)
261 PRK01438 murD UDP-N-acetylmura 95.9 0.027 6.9E-07 34.2 6.0 31 1-31 18-48 (481)
262 COG1251 NirB NAD(P)H-nitrite r 95.8 0.022 5.6E-07 34.8 5.3 24 130-153 220-243 (793)
263 PRK07531 bifunctional 3-hydrox 95.8 0.012 3E-07 36.7 3.9 31 2-32 7-37 (489)
264 PTZ00318 NADH dehydrogenase; P 95.8 0.0091 2.3E-07 37.5 3.3 33 1-33 14-46 (514)
265 TIGR01320 mal_quin_oxido malat 95.8 0.087 2.2E-06 30.7 8.3 151 1-151 4-241 (487)
266 TIGR01373 soxB sarcosine oxida 95.7 0.01 2.6E-07 37.1 3.4 166 1-168 34-256 (407)
267 TIGR01438 TGR thioredoxin and 95.7 0.012 2.9E-07 36.8 3.5 29 1-29 6-34 (513)
268 PRK06129 3-hydroxyacyl-CoA deh 95.7 0.012 3.2E-07 36.5 3.7 32 2-33 7-38 (308)
269 PRK05808 3-hydroxybutyryl-CoA 95.6 0.015 3.7E-07 36.1 3.7 31 2-32 8-38 (282)
270 PRK02705 murD UDP-N-acetylmura 95.5 0.045 1.2E-06 32.7 6.0 31 1-31 4-34 (459)
271 PRK07530 3-hydroxybutyryl-CoA 95.5 0.017 4.3E-07 35.6 3.7 31 2-32 9-39 (292)
272 PRK08293 3-hydroxybutyryl-CoA 95.5 0.018 4.5E-07 35.5 3.7 31 2-32 8-38 (288)
273 PRK06035 3-hydroxyacyl-CoA deh 95.4 0.017 4.3E-07 35.6 3.6 30 2-31 8-37 (291)
274 PRK04965 nitric oxide reductas 95.4 0.022 5.6E-07 34.9 4.2 32 1-32 145-176 (378)
275 PRK07660 consensus 95.3 0.02 5.2E-07 35.1 3.7 32 1-32 7-38 (283)
276 TIGR01816 sdhA_forward succina 95.3 0.018 4.5E-07 35.5 3.4 175 1-182 6-238 (615)
277 KOG1238 consensus 95.3 0.017 4.4E-07 35.5 3.3 32 1-32 61-93 (623)
278 KOG2404 consensus 95.3 0.021 5.4E-07 35.0 3.7 33 1-33 13-45 (477)
279 PRK07066 3-hydroxybutyryl-CoA 95.3 0.017 4.3E-07 35.6 3.1 52 2-55 12-63 (321)
280 PRK07819 3-hydroxybutyryl-CoA 95.2 0.023 6E-07 34.6 3.8 31 2-32 7-37 (284)
281 PRK06130 3-hydroxybutyryl-CoA 95.2 0.021 5.4E-07 35.0 3.5 30 2-31 10-39 (310)
282 PRK09260 3-hydroxybutyryl-CoA 95.2 0.022 5.6E-07 34.8 3.6 32 1-32 6-37 (289)
283 PRK03803 murD UDP-N-acetylmura 95.2 0.028 7.1E-07 34.1 4.1 31 1-31 11-41 (448)
284 PRK02006 murD UDP-N-acetylmura 95.2 0.032 8E-07 33.8 4.4 31 1-31 11-41 (501)
285 pfam03721 UDPG_MGDP_dh_N UDP-g 95.2 0.024 6.1E-07 34.6 3.7 30 2-31 5-34 (185)
286 PRK09117 consensus 95.1 0.025 6.4E-07 34.4 3.7 31 2-32 7-37 (282)
287 COG1252 Ndh NADH dehydrogenase 95.1 0.032 8.1E-07 33.7 4.2 33 1-33 7-41 (405)
288 PTZ00153 lipoamide dehydrogena 95.1 0.05 1.3E-06 32.4 5.0 55 1-60 127-186 (673)
289 COG1252 Ndh NADH dehydrogenase 95.0 0.025 6.4E-07 34.4 3.3 53 102-154 57-112 (405)
290 PRK05257 malate:quinone oxidor 95.0 0.28 7.2E-06 27.3 10.8 152 1-153 13-250 (499)
291 PRK01710 murD UDP-N-acetylmura 94.9 0.078 2E-06 31.1 5.7 31 1-31 18-48 (458)
292 pfam07992 Pyr_redox_2 Pyridine 94.9 0.039 9.9E-07 33.1 4.2 47 107-154 58-108 (277)
293 PRK06522 2-dehydropantoate 2-r 94.9 0.032 8.2E-07 33.7 3.6 31 1-31 4-34 (307)
294 TIGR02053 MerA mercuric reduct 94.9 0.015 3.7E-07 36.0 1.9 32 1-32 185-216 (494)
295 PTZ00153 lipoamide dehydrogena 94.8 0.037 9.4E-07 33.3 3.8 33 1-33 324-356 (673)
296 pfam02558 ApbA Ketopantoate re 94.8 0.048 1.2E-06 32.5 4.3 30 1-30 2-31 (150)
297 KOG4254 consensus 94.7 0.021 5.3E-07 35.0 2.3 30 1-30 18-47 (561)
298 PRK00141 murD UDP-N-acetylmura 94.6 0.057 1.5E-06 32.0 4.3 31 1-31 21-51 (476)
299 KOG2311 consensus 94.6 0.055 1.4E-06 32.1 4.2 29 1-29 32-60 (679)
300 TIGR03026 NDP-sugDHase nucleot 94.5 0.045 1.1E-06 32.7 3.6 30 2-31 5-34 (411)
301 COG3634 AhpF Alkyl hydroperoxi 94.4 0.016 4E-07 35.8 1.2 26 1-26 215-240 (520)
302 PRK02472 murD UDP-N-acetylmura 94.4 0.066 1.7E-06 31.6 4.4 31 1-31 13-43 (450)
303 PRK05708 2-dehydropantoate 2-r 94.4 0.045 1.1E-06 32.7 3.4 30 1-30 6-35 (305)
304 pfam01210 NAD_Gly3P_dh_N NAD-d 94.4 0.065 1.6E-06 31.6 4.2 31 1-31 4-34 (159)
305 PRK08268 3-hydroxybutyryl-CoA 94.3 0.055 1.4E-06 32.1 3.8 32 2-33 8-39 (503)
306 PRK03369 murD UDP-N-acetylmura 94.3 0.063 1.6E-06 31.7 4.0 30 1-30 16-45 (487)
307 TIGR02061 aprA adenylylsulfate 94.3 0.038 9.6E-07 33.3 2.8 32 1-32 3-38 (651)
308 PRK11064 wecC UDP-N-acetyl-D-m 94.3 0.052 1.3E-06 32.3 3.5 30 2-31 8-37 (415)
309 PRK08229 2-dehydropantoate 2-r 94.2 0.064 1.6E-06 31.7 3.9 29 1-29 6-34 (341)
310 COG2509 Uncharacterized FAD-de 94.2 0.42 1.1E-05 26.1 14.1 153 1-154 22-231 (486)
311 pfam02254 TrkA_N TrkA-N domain 94.2 0.054 1.4E-06 32.2 3.5 53 1-54 2-59 (115)
312 pfam01262 AlaDh_PNT_C Alanine 94.1 0.062 1.6E-06 31.7 3.7 31 1-31 24-54 (150)
313 PRK03806 murD UDP-N-acetylmura 94.0 0.086 2.2E-06 30.8 4.3 31 1-31 10-40 (438)
314 PRK04308 murD UDP-N-acetylmura 94.0 0.085 2.2E-06 30.8 4.2 31 1-31 9-39 (445)
315 PTZ00318 NADH dehydrogenase; P 93.9 0.065 1.7E-06 31.6 3.4 33 276-311 317-352 (514)
316 PRK01390 murD UDP-N-acetylmura 93.6 0.11 2.8E-06 30.1 4.1 31 1-31 13-43 (457)
317 COG1004 Ugd Predicted UDP-gluc 93.4 0.093 2.4E-06 30.5 3.6 30 2-31 5-34 (414)
318 PRK12921 2-dehydropantoate 2-r 93.4 0.11 2.7E-06 30.2 3.8 30 1-30 4-33 (306)
319 PRK13977 myosin-cross-reactive 93.4 0.13 3.4E-06 29.5 4.3 32 2-33 27-62 (577)
320 KOG2960 consensus 93.4 0.052 1.3E-06 32.3 2.2 32 1-32 80-113 (328)
321 PRK10669 putative cation:proto 93.3 0.12 3.1E-06 29.7 4.0 12 275-286 459-470 (558)
322 pfam06100 Strep_67kDa_ant Stre 93.3 0.13 3.4E-06 29.5 4.2 31 2-32 7-41 (500)
323 TIGR00692 tdh L-threonine 3-de 93.3 0.095 2.4E-06 30.5 3.4 14 275-288 254-267 (341)
324 PRK07417 arogenate dehydrogena 93.3 0.1 2.6E-06 30.3 3.5 44 1-57 5-48 (280)
325 PRK06249 2-dehydropantoate 2-r 93.1 0.13 3.4E-06 29.5 3.9 29 1-29 9-37 (313)
326 TIGR01763 MalateDH_bact malate 93.0 0.084 2.1E-06 30.9 2.8 27 2-28 6-34 (308)
327 PRK00683 murD UDP-N-acetylmura 92.9 0.14 3.5E-06 29.4 3.8 30 1-30 7-36 (418)
328 COG1063 Tdh Threonine dehydrog 92.8 0.13 3.3E-06 29.6 3.5 13 275-287 262-274 (350)
329 TIGR03143 AhpF_homolog putativ 92.8 0.17 4.3E-06 28.8 4.1 33 1-33 147-179 (555)
330 pfam00996 GDI GDP dissociation 92.7 0.16 4.2E-06 28.9 4.0 39 1-39 8-46 (439)
331 PRK09424 pntA NAD(P) transhydr 92.6 0.091 2.3E-06 30.6 2.6 31 1-31 169-199 (510)
332 PRK07502 cyclohexadienyl dehyd 92.5 0.28 7.2E-06 27.2 5.0 45 1-58 10-56 (307)
333 PRK11730 fadB multifunctional 92.3 0.14 3.7E-06 29.3 3.3 32 2-33 318-349 (715)
334 KOG0404 consensus 92.1 0.13 3.2E-06 29.6 2.8 107 1-152 12-123 (322)
335 COG1748 LYS9 Saccharopine dehy 91.8 0.22 5.5E-06 28.0 3.7 31 1-31 5-36 (389)
336 COG5044 MRS6 RAB proteins gera 91.7 0.29 7.3E-06 27.2 4.2 40 1-40 10-49 (434)
337 TIGR00745 apbA_panE 2-dehydrop 91.7 0.23 5.9E-06 27.8 3.7 29 1-29 3-33 (332)
338 TIGR01810 betA choline dehydro 91.7 0.092 2.3E-06 30.6 1.6 28 1-28 3-31 (540)
339 cd05293 LDH_1 A subgroup of L- 91.5 0.36 9.1E-06 26.5 4.5 31 1-31 7-39 (312)
340 COG0771 MurD UDP-N-acetylmuram 91.3 0.24 6.2E-06 27.7 3.5 32 1-32 11-42 (448)
341 PRK06567 putative bifunctional 91.3 0.13 3.4E-06 29.4 2.2 28 1-28 405-432 (1048)
342 COG3486 IucD Lysine/ornithine 91.1 0.21 5.3E-06 28.1 3.0 109 1-129 9-123 (436)
343 KOG0042 consensus 91.0 0.084 2.1E-06 30.8 0.9 51 1-51 71-122 (680)
344 PRK08507 prephenate dehydrogen 90.9 0.51 1.3E-05 25.5 4.8 44 1-57 4-49 (275)
345 PRK00094 gpsA NAD(P)H-dependen 90.7 0.33 8.4E-06 26.8 3.7 31 1-31 5-35 (325)
346 pfam03446 NAD_binding_2 NAD bi 90.7 0.34 8.7E-06 26.7 3.8 31 2-32 6-36 (163)
347 PRK06545 prephenate dehydrogen 90.7 0.33 8.3E-06 26.8 3.7 46 1-57 4-49 (357)
348 PRK08306 dipicolinate synthase 90.6 0.15 3.9E-06 29.1 2.0 27 1-27 6-32 (296)
349 COG0287 TyrA Prephenate dehydr 90.6 0.4 1E-05 26.2 4.1 46 1-57 7-52 (279)
350 KOG0405 consensus 90.5 0.78 2E-05 24.2 5.5 30 1-30 24-53 (478)
351 TIGR03140 AhpF alkyl hydropero 90.4 0.41 1.1E-05 26.1 4.0 17 295-311 360-376 (515)
352 cd01339 LDH-like_MDH L-lactate 90.4 0.48 1.2E-05 25.7 4.3 31 1-31 2-33 (300)
353 pfam10727 Rossmann-like Rossma 90.2 0.27 6.8E-06 27.4 2.9 27 2-28 2-28 (111)
354 COG1893 ApbA Ketopantoate redu 89.9 0.35 8.9E-06 26.6 3.3 30 1-30 4-33 (307)
355 COG1250 FadB 3-hydroxyacyl-CoA 89.5 0.34 8.8E-06 26.7 3.0 31 2-32 8-38 (307)
356 KOG4716 consensus 89.5 0.44 1.1E-05 25.9 3.6 33 1-33 23-56 (503)
357 KOG1336 consensus 89.5 0.61 1.6E-05 24.9 4.3 27 1-27 78-106 (478)
358 TIGR01771 L-LDH-NAD L-lactate 89.4 0.29 7.5E-06 27.1 2.6 31 2-32 1-33 (302)
359 PTZ00142 6-phosphogluconate de 89.2 0.45 1.2E-05 25.8 3.4 30 2-31 10-39 (474)
360 KOG1335 consensus 88.8 0.21 5.4E-06 28.1 1.5 18 138-155 299-316 (506)
361 TIGR01421 gluta_reduc_1 glutat 88.6 0.45 1.2E-05 25.8 3.1 30 1-30 6-35 (475)
362 PRK00066 ldh L-lactate dehydro 88.6 0.82 2.1E-05 24.1 4.4 32 1-32 10-43 (315)
363 pfam00056 Ldh_1_N lactate/mala 88.5 0.69 1.8E-05 24.6 4.0 31 1-31 4-37 (142)
364 cd05292 LDH_2 A subgroup of L- 88.4 0.86 2.2E-05 23.9 4.4 32 1-32 4-37 (308)
365 KOG2495 consensus 88.4 0.16 4E-06 29.0 0.6 33 276-311 360-393 (491)
366 cd01337 MDH_glyoxysomal_mitoch 88.3 0.7 1.8E-05 24.5 3.9 29 1-29 4-35 (310)
367 PRK12475 thiamine/molybdopteri 88.2 0.8 2E-05 24.1 4.2 29 1-29 28-57 (337)
368 PRK10083 putative dehydrogenas 88.2 0.48 1.2E-05 25.6 3.0 10 275-284 252-261 (339)
369 KOG0024 consensus 88.1 1.4 3.5E-05 22.5 5.3 14 275-288 266-279 (354)
370 PRK00421 murC UDP-N-acetylmura 87.9 1.4 3.6E-05 22.5 5.2 41 2-54 13-54 (459)
371 PTZ00117 malate dehydrogenase; 87.9 0.96 2.4E-05 23.6 4.4 32 1-32 5-37 (313)
372 PRK07688 thiamine/molybdopteri 87.8 0.85 2.2E-05 23.9 4.1 29 1-29 28-57 (339)
373 PRK06223 malate dehydrogenase; 87.7 0.92 2.4E-05 23.7 4.2 31 1-31 4-36 (312)
374 KOG2755 consensus 87.7 0.26 6.6E-06 27.5 1.4 34 1-34 3-38 (334)
375 pfam00899 ThiF ThiF family. Th 87.6 0.94 2.4E-05 23.7 4.2 30 1-30 5-35 (134)
376 TIGR02279 PaaC-3OHAcCoADH 3-hy 87.5 0.4 1E-05 26.2 2.3 32 1-32 9-40 (508)
377 cd00300 LDH_like L-lactate deh 87.4 1 2.7E-05 23.3 4.4 32 1-32 2-35 (300)
378 cd05290 LDH_3 A subgroup of L- 87.4 1.1 2.8E-05 23.2 4.5 32 1-32 3-36 (307)
379 TIGR02197 heptose_epim ADP-L-g 87.4 0.82 2.1E-05 24.1 3.8 128 1-139 1-147 (353)
380 PRK09599 6-phosphogluconate de 87.4 0.68 1.7E-05 24.6 3.4 31 2-32 5-35 (301)
381 PRK11154 fadJ multifunctional 87.3 0.55 1.4E-05 25.2 2.9 31 2-32 314-345 (706)
382 PRK09288 purT phosphoribosylgl 87.1 1.1 2.9E-05 23.1 4.3 31 1-31 16-46 (395)
383 COG0451 WcaG Nucleoside-diphos 87.0 1.2 3E-05 23.0 4.4 33 1-33 4-37 (314)
384 COG2085 Predicted dinucleotide 86.8 0.96 2.5E-05 23.6 3.9 30 1-30 5-34 (211)
385 PRK12490 6-phosphogluconate de 86.6 0.86 2.2E-05 23.9 3.5 31 2-32 5-35 (298)
386 pfam01488 Shikimate_DH Shikima 86.5 0.97 2.5E-05 23.6 3.8 30 1-30 16-46 (134)
387 TIGR01777 yfcH conserved hypot 86.5 1 2.7E-05 23.3 3.9 33 1-33 2-36 (307)
388 PRK06718 precorrin-2 dehydroge 86.4 1.1 2.7E-05 23.3 3.9 28 1-28 14-41 (202)
389 PTZ00325 malate dehydrogenase; 86.4 1.1 2.8E-05 23.2 4.0 29 1-29 5-36 (313)
390 cd05291 HicDH_like L-2-hydroxy 86.4 1.3 3.3E-05 22.7 4.3 30 2-31 5-36 (306)
391 KOG2304 consensus 86.3 0.51 1.3E-05 25.5 2.3 30 2-31 16-45 (298)
392 PRK05562 precorrin-2 dehydroge 86.3 1.1 2.8E-05 23.2 4.0 117 1-155 28-146 (222)
393 PTZ00082 L-lactate dehydrogena 86.1 1.3 3.4E-05 22.6 4.3 32 1-32 11-43 (322)
394 cd01487 E1_ThiF_like E1_ThiF_l 86.1 1.3 3.3E-05 22.7 4.2 30 1-30 3-33 (174)
395 PRK06719 precorrin-2 dehydroge 86.0 1.2 2.9E-05 23.1 3.9 27 1-27 17-43 (157)
396 PRK08644 thiamine biosynthesis 85.9 1.3 3.3E-05 22.7 4.1 29 1-29 31-60 (209)
397 PRK11559 garR tartronate semia 85.9 1 2.7E-05 23.3 3.7 30 2-31 6-35 (295)
398 PRK03815 murD UDP-N-acetylmura 85.8 1.1 2.9E-05 23.1 3.8 30 1-30 4-33 (401)
399 cd00650 LDH_MDH_like NAD-depen 85.8 1.5 3.8E-05 22.3 4.4 31 1-31 2-37 (263)
400 PRK05690 molybdopterin biosynt 85.7 1.4 3.7E-05 22.4 4.3 30 1-30 36-66 (245)
401 pfam03435 Saccharop_dh Sacchar 85.6 1.1 2.9E-05 23.1 3.8 31 1-31 2-34 (384)
402 COG0240 GpsA Glycerol-3-phosph 85.1 1.1 2.8E-05 23.2 3.5 31 2-32 6-36 (329)
403 TIGR02356 adenyl_thiF thiazole 84.9 1.2 3E-05 23.0 3.5 30 1-30 25-55 (210)
404 PRK08328 hypothetical protein; 84.8 1.5 3.7E-05 22.4 4.0 29 1-29 31-60 (230)
405 cd00755 YgdL_like Family of ac 84.8 1.5 3.8E-05 22.3 4.0 30 1-30 15-45 (231)
406 TIGR03466 HpnA hopanoid-associ 84.8 1.8 4.5E-05 21.8 4.4 32 1-32 4-36 (328)
407 PRK06019 phosphoribosylaminoim 84.6 1.7 4.5E-05 21.8 4.3 31 2-32 12-42 (377)
408 PRK04663 murD UDP-N-acetylmura 84.6 1.5 3.7E-05 22.3 3.9 30 1-30 11-42 (438)
409 pfam04321 RmlD_sub_bind RmlD s 84.5 1.6 4E-05 22.2 4.0 30 1-30 2-32 (284)
410 TIGR01087 murD UDP-N-acetylmur 84.4 1.1 2.9E-05 23.1 3.3 32 1-32 3-36 (476)
411 KOG2018 consensus 84.3 1.3 3.4E-05 22.6 3.6 49 1-54 78-127 (430)
412 PRK10675 UDP-galactose-4-epime 84.2 1.7 4.4E-05 21.8 4.2 29 1-29 4-33 (338)
413 KOG4716 consensus 84.1 0.32 8.1E-06 26.9 0.3 13 298-310 350-362 (503)
414 cd00757 ThiF_MoeB_HesA_family 84.0 1.8 4.7E-05 21.6 4.2 29 1-29 25-54 (228)
415 pfam05368 NmrA NmrA-like famil 83.9 1.9 4.8E-05 21.6 4.3 31 1-31 2-33 (232)
416 cd05294 LDH-like_MDH_nadp A la 83.9 1.9 4.9E-05 21.5 4.3 32 1-32 4-38 (309)
417 KOG4405 consensus 83.7 1.3 3.4E-05 22.6 3.4 42 1-42 12-53 (547)
418 PRK09422 alcohol dehydrogenase 83.5 1.6 4E-05 22.1 3.7 11 275-285 254-264 (338)
419 COG2084 MmsB 3-hydroxyisobutyr 83.5 1.7 4.3E-05 21.9 3.8 31 2-32 5-35 (286)
420 KOG2305 consensus 83.3 0.88 2.2E-05 23.9 2.4 28 2-29 8-35 (313)
421 PRK08762 molybdopterin biosynt 83.3 1.9 4.7E-05 21.6 4.0 23 4-26 66-89 (379)
422 PRK12557 H(2)-dependent methyl 83.2 2 5.2E-05 21.4 4.2 39 8-54 31-69 (341)
423 KOG1439 consensus 83.1 0.46 1.2E-05 25.8 0.8 40 1-40 8-47 (440)
424 TIGR01176 fum_red_Fp fumarate 82.8 1.4 3.6E-05 22.4 3.3 29 1-29 7-37 (585)
425 PRK07878 molybdopterin biosynt 82.7 2 5.2E-05 21.4 4.0 30 1-30 46-76 (392)
426 COG0686 Ald Alanine dehydrogen 82.4 1.1 2.9E-05 23.1 2.6 15 14-28 24-38 (371)
427 PRK13771 putative alcohol dehy 82.3 1.9 4.8E-05 21.6 3.7 11 275-285 248-258 (332)
428 cd01492 Aos1_SUMO Ubiquitin ac 82.2 2.4 6.1E-05 20.9 4.2 30 1-30 25-55 (197)
429 PRK07411 hypothetical protein; 81.8 2.3 5.9E-05 21.0 4.0 30 1-30 42-72 (390)
430 PRK05600 thiamine biosynthesis 81.7 2.5 6.4E-05 20.7 4.2 30 1-30 45-75 (370)
431 TIGR00562 proto_IX_ox protopor 81.7 1.9 5E-05 21.5 3.6 32 1-32 6-43 (556)
432 PRK08223 hypothetical protein; 81.6 2.4 6.1E-05 20.9 4.0 29 1-29 31-60 (287)
433 PRK09310 aroDE bifunctional 3- 81.5 2 5.1E-05 21.4 3.6 10 146-155 164-173 (477)
434 PRK06849 hypothetical protein; 81.1 3 7.5E-05 20.2 4.4 31 1-31 8-39 (387)
435 COG0026 PurK Phosphoribosylami 80.9 2.8 7.2E-05 20.4 4.2 31 2-32 6-36 (375)
436 PRK05597 molybdopterin biosynt 80.6 3 7.6E-05 20.2 4.2 30 1-30 32-62 (355)
437 pfam00670 AdoHcyase_NAD S-aden 80.6 1.5 3.9E-05 22.2 2.7 30 1-30 27-56 (162)
438 cd01483 E1_enzyme_family Super 80.4 2.8 7.2E-05 20.4 4.1 30 1-30 3-33 (143)
439 PRK07102 short chain dehydroge 80.3 2.5 6.4E-05 20.7 3.8 31 1-31 5-36 (243)
440 cd01484 E1-2_like Ubiquitin ac 80.1 2.8 7.2E-05 20.4 4.0 29 1-29 3-32 (234)
441 PRK04690 murD UDP-N-acetylmura 79.8 3 7.6E-05 20.2 4.0 26 1-26 12-37 (468)
442 cd01065 NAD_bind_Shikimate_DH 79.8 2.3 5.9E-05 21.0 3.5 30 1-30 23-53 (155)
443 PRK01368 murD UDP-N-acetylmura 79.5 2.7 7E-05 20.5 3.8 28 1-28 10-37 (450)
444 PRK08862 short chain dehydroge 79.5 2.4 6.1E-05 20.9 3.5 31 1-31 9-40 (227)
445 PRK07832 short chain dehydroge 79.2 2.8 7.2E-05 20.4 3.8 30 1-30 4-34 (272)
446 cd01489 Uba2_SUMO Ubiquitin ac 79.2 3.3 8.3E-05 19.9 4.1 29 1-29 3-32 (312)
447 cd01485 E1-1_like Ubiquitin ac 79.1 3.6 9.1E-05 19.7 4.3 30 1-30 23-53 (198)
448 PRK08643 acetoin reductase; Va 78.4 2.7 6.9E-05 20.5 3.5 31 1-31 6-37 (256)
449 COG4716 Myosin-crossreactive a 78.3 0.62 1.6E-05 24.9 0.1 31 2-32 27-61 (587)
450 PRK12549 shikimate 5-dehydroge 78.3 2.8 7.3E-05 20.4 3.6 12 144-155 131-142 (284)
451 COG1433 Uncharacterized conser 78.1 3.9 9.9E-05 19.4 4.2 12 198-209 24-35 (121)
452 TIGR02355 moeB molybdopterin s 78.0 2.4 6.2E-05 20.8 3.1 29 1-29 28-57 (240)
453 PRK05650 short chain dehydroge 77.9 3.1 7.9E-05 20.1 3.6 30 1-30 4-34 (270)
454 PRK07831 short chain dehydroge 77.9 3.1 8E-05 20.1 3.7 31 1-31 20-52 (261)
455 TIGR03376 glycerol3P_DH glycer 77.5 3.8 9.8E-05 19.5 4.0 31 1-31 3-41 (342)
456 PRK07666 fabG 3-ketoacyl-(acyl 77.4 2.9 7.3E-05 20.4 3.4 31 1-31 10-41 (238)
457 KOG3851 consensus 77.4 1.9 4.8E-05 21.6 2.4 31 1-31 43-75 (446)
458 pfam03807 F420_oxidored NADP o 77.3 3.7 9.3E-05 19.6 3.9 28 2-29 4-32 (93)
459 cd01486 Apg7 Apg7 is an E1-lik 77.3 2.5 6.3E-05 20.8 3.0 29 1-29 3-32 (307)
460 TIGR01424 gluta_reduc_2 glutat 77.2 4.7 0.00012 18.8 9.2 134 2-162 7-169 (478)
461 PRK05653 fabG 3-ketoacyl-(acyl 77.2 3.1 7.9E-05 20.1 3.5 31 1-31 9-40 (246)
462 PRK12862 malic enzyme; Reviewe 77.1 3.8 9.8E-05 19.5 4.0 32 1-32 196-230 (761)
463 PRK06200 2,3-dihydroxy-2,3-dih 77.1 3.1 7.9E-05 20.1 3.5 31 1-31 10-41 (263)
464 KOG1371 consensus 76.9 1.9 4.9E-05 21.5 2.4 26 3-28 9-34 (343)
465 PRK00258 aroE shikimate 5-dehy 76.7 2.7 7E-05 20.5 3.1 15 143-157 125-139 (275)
466 PRK05086 malate dehydrogenase; 76.6 3.8 9.6E-05 19.5 3.8 30 1-30 4-37 (312)
467 PRK07454 short chain dehydroge 76.5 3 7.7E-05 20.2 3.3 31 1-31 10-41 (241)
468 PRK07232 malic enzyme; Reviewe 76.5 4.1 0.00011 19.2 4.0 31 1-31 190-223 (753)
469 PRK07326 short chain dehydroge 76.4 3.4 8.7E-05 19.8 3.5 31 1-31 9-40 (235)
470 PRK08267 short chain dehydroge 76.3 3.2 8.3E-05 20.0 3.4 30 1-30 5-35 (258)
471 PRK05786 fabG 3-ketoacyl-(acyl 76.2 3.4 8.8E-05 19.8 3.5 31 1-31 9-40 (238)
472 COG1087 GalE UDP-glucose 4-epi 76.2 3.5 9E-05 19.7 3.5 26 4-29 8-33 (329)
473 PRK12825 fabG 3-ketoacyl-(acyl 76.0 4.4 0.00011 19.0 4.0 30 1-30 11-41 (250)
474 TIGR01035 hemA glutamyl-tRNA r 75.8 3.9 0.0001 19.4 3.7 10 19-28 9-18 (436)
475 PRK08339 short chain dehydroge 75.8 3.8 9.6E-05 19.5 3.6 31 1-31 12-43 (263)
476 COG1179 Dinucleotide-utilizing 75.3 3.5 9E-05 19.7 3.4 30 1-30 34-64 (263)
477 KOG1346 consensus 75.3 2.6 6.7E-05 20.6 2.7 19 133-151 429-447 (659)
478 COG1648 CysG Siroheme synthase 75.3 4.5 0.00011 19.0 3.9 29 1-29 16-44 (210)
479 pfam01370 Epimerase NAD depend 75.2 5.3 0.00014 18.5 4.4 32 1-32 2-34 (235)
480 PRK08277 D-mannonate oxidoredu 75.1 4 0.0001 19.4 3.6 31 1-31 14-45 (278)
481 cd01078 NAD_bind_H4MPT_DH NADP 74.9 4.1 0.0001 19.3 3.6 29 2-30 33-62 (194)
482 PRK08945 short chain dehydroge 74.9 4.4 0.00011 19.1 3.7 30 1-30 17-47 (245)
483 TIGR03377 glycerol3P_GlpA glyc 74.9 5.4 0.00014 18.4 10.6 63 99-162 125-200 (516)
484 PRK07775 short chain dehydroge 74.8 4.3 0.00011 19.1 3.7 31 1-31 14-45 (275)
485 PRK12550 shikimate 5-dehydroge 74.7 4.2 0.00011 19.2 3.6 12 144-155 126-137 (272)
486 PRK06949 short chain dehydroge 74.7 4 0.0001 19.3 3.5 31 1-31 13-44 (258)
487 TIGR01179 galE UDP-glucose 4-e 74.6 2.6 6.6E-05 20.7 2.5 116 1-127 3-129 (341)
488 PRK06101 short chain dehydroge 74.6 4.3 0.00011 19.1 3.7 30 1-30 5-35 (241)
489 PRK08655 prephenate dehydrogen 74.4 5.4 0.00014 18.4 4.1 31 1-31 4-35 (441)
490 PRK06181 short chain dehydroge 74.3 4.2 0.00011 19.2 3.6 31 1-31 5-36 (263)
491 PRK06194 hypothetical protein; 74.1 4.2 0.00011 19.2 3.5 31 1-31 10-41 (301)
492 PRK09242 tropinone reductase; 74.0 4.3 0.00011 19.2 3.5 31 1-31 14-45 (258)
493 pfam02826 2-Hacid_dh_C D-isome 74.0 5.7 0.00015 18.3 6.5 100 2-115 41-142 (176)
494 PRK12439 NAD(P)H-dependent gly 73.9 4.4 0.00011 19.1 3.6 29 2-31 11-39 (340)
495 PRK08220 2,3-dihydroxybenzoate 73.9 4.8 0.00012 18.8 3.7 31 1-31 12-43 (253)
496 PRK08017 short chain dehydroge 73.7 4.4 0.00011 19.0 3.5 31 1-31 6-37 (256)
497 PRK06500 short chain dehydroge 73.7 4.3 0.00011 19.1 3.5 31 1-31 10-41 (249)
498 PRK07041 short chain dehydroge 73.5 4.4 0.00011 19.1 3.5 31 1-31 11-42 (240)
499 COG0281 SfcA Malic enzyme [Ene 73.4 5 0.00013 18.7 3.8 29 1-29 203-234 (432)
500 PRK00257 erythronate-4-phospha 73.4 5.3 0.00014 18.5 3.9 27 2-28 121-147 (379)
No 1
>PRK06475 salicylate hydroxylase; Provisional
Probab=100.00 E-value=0 Score=535.24 Aligned_cols=377 Identities=28% Similarity=0.507 Sum_probs=328.2
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 38775389999999999779859999568765557713667888999999889947898626884306999788544333
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELS 80 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
+||||||+||++|+.|+++|++|+||||++.+++.|+|++|+||++++|+++|+++++.+.+..+..+.++++.++..+.
T Consensus 6 lIVGaGiaGL~~A~~L~~~G~~v~V~E~~~~~~~~G~gi~l~pn~~~~L~~lGl~~~l~~~~~~~~~~~~~d~~~~~~~~ 85 (400)
T PRK06475 6 LIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKARPLL 85 (400)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCEEEEEECCCCCEEE
T ss_conf 99895889999999999789999999179988888847888889999999879927888438886259996078674565
Q ss_pred CCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC----CCC--CCC---CCCCEEEEEEEEECCC
Q ss_conf 4554323444478247862000134788997320687256421012344----321--123---4531035689974367
Q gi|254780168|r 81 RFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP----DCT--QIS---KINNQKPDLLVGADGL 151 (380)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~----~~~--~~~---~~~~~~adlvIgADG~ 151 (380)
..+..+.....++.++..|+|.+|.++|.+.+.+.+++++++++++++. +.+ .+. .+++.+||+||||||+
T Consensus 86 ~~~~~~~~~~~~~~p~~~i~R~~L~~~L~~~~~~~~~i~i~~g~~v~~~~~~~~~v~~~~~~~~~~~~~~adlvIGADGi 165 (400)
T PRK06475 86 HMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGV 165 (400)
T ss_pred EECCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCEEECCCEEEEEEECCCCEEEEEECCCCCEEEECCEEEECCCC
T ss_conf 20244322225789659977899999999999748994897387899999528960489973898669970689966997
Q ss_pred CCCCHHHCCCCCCCCCCCEEEEEECCCCCCCCC-----CCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCC
Q ss_conf 663121128533443110157860365446554-----566760899765405788840489737999984577421112
Q gi|254780168|r 152 NSNIRHYIDTQPITFSGDVVLRCLIPQNNAPEF-----IDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDIS 226 (380)
Q Consensus 152 ~S~vR~~l~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 226 (380)
+|+||+.++...+.|+|+++|++.++.+..+.. .+.+.+..|++++++++.||+.++..++++.+...+...+ .
T Consensus 166 ~S~vR~~~~~~~~~~~g~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~v~~~~~~~~~~-~ 244 (400)
T PRK06475 166 WSMLRQKAGYSKARFSGHIAWRTTLAADALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNFVAITGGENPGE-V 244 (400)
T ss_pred CCCHHHHCCCCCCCCCCEEEEEEEEECCCCCHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEECCCCCHH-H
T ss_conf 631333158987875863899999860126555654067877079996799769999858996899999706888002-2
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHHHH
Q ss_conf 34553222389898632128022201100233210123346542101468711211111244830334201303679999
Q gi|254780168|r 227 FLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYAL 306 (380)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~L 306 (380)
......++.+.+.+.+|.+.+.+++..++++..||++.....++|..+||+|||||||+|+|+.|||+|||||||++|
T Consensus 245 --~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gRvvLiGDAAH~~~P~~GQGan~aieDA~~L 322 (400)
T PRK06475 245 --WSKTGDKAHLKSIYADWNKPVLQILAAIDEWTYWPLFEMADAQFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAAAL 322 (400)
T ss_pred --HCCCCCHHHHHHHHHHCCHHHHHHHHHHCCEEEEEEEEECCCCEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf --035589999999986305479999985125046433540234343378468840322556975101377899999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHCCHHHCCCCCC
Q ss_conf 99852489899999999986799999999999988983678989999999998515333777204375898899
Q gi|254780168|r 307 SYLLGKKTIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRPASLFRNAGLRLGIHKPLHKSLDWIYQYKIPE 380 (380)
Q Consensus 307 a~~L~~~~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~l~wl~~~~~~~ 380 (380)
|++|+.++++++|+.||+.|+||+.+|+..|+.|+++||.++|.+.+||++|+...+..+.++++|||+||.++
T Consensus 323 A~~L~~~~~~~al~~Ye~~R~~R~~~v~~~s~~~~~~~h~~~~~~~~r~~~~~~~~p~~~~~~~~wl~~~d~~~ 396 (400)
T PRK06475 323 AEALDSDDQSAGLKRFDSVRKERIAAVAKRGQLNRFAYHATGIFALGRNMLFAIRSPESFLKDLDWLYGYDAAN 396 (400)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHCCCHHHCCCHHH
T ss_conf 99865578999999999999999999999999979986899878998899985569667531007132358776
No 2
>PRK08163 salicylate hydroxylase; Provisional
Probab=100.00 E-value=0 Score=530.17 Aligned_cols=377 Identities=26% Similarity=0.408 Sum_probs=334.4
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 38775389999999999779859999568765557713667888999999889947898626884306999788544333
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELS 80 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
+||||||+||++|+.|+++|++|+|||+++.+++.|+||+|+||++++|++||+++++...+..+..+.+++..+++.+.
T Consensus 8 ~IVGaGiaGL~lA~~L~r~Gi~v~V~Er~~~~~~~G~gi~l~pn~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (396)
T PRK08163 8 LIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDAEEVV 87 (396)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHHCCCCCCEEEEECCCCCEEE
T ss_conf 99897889999999999789999999179988878718898989999999879908998316676625999768885888
Q ss_pred CCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCCC------CCCCCCCCCEEEEEEEEECCCCCC
Q ss_conf 45543234444782478620001347889973206872564210123443------211234531035689974367663
Q gi|254780168|r 81 RFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHPD------CTQISKINNQKPDLLVGADGLNSN 154 (380)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~~------~~~~~~~~~~~adlvIgADG~~S~ 154 (380)
+++..+.....++.++..|+|.+|++.|.+.+.+.+.+.++++++++..+ .+.+.++++.++|+||||||++|+
T Consensus 88 ~~~~~~~~~~~~g~p~~~i~R~~L~~~Ll~~~~~~~~v~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~ 167 (396)
T PRK08163 88 RIPTGQAFRDRFGNPYAVIHRADIHLSLLEAVQDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSV 167 (396)
T ss_pred EECCCCHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECCCEEEEEECCCCEEEEEEEEECCCCCCH
T ss_conf 50476045662499726877999999999999856981787099999999539979999889989987699964887736
Q ss_pred CHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 12112853344311015786036544655456676089976540578884048973799998457742111234553222
Q gi|254780168|r 155 IRHYIDTQPITFSGDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKRSEIH 234 (380)
Q Consensus 155 vR~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (380)
||+++..+.+.++++.+|+++++..+.+.....+...+|.+|+.+++.||+.++..++++.........+. ...+..
T Consensus 168 vR~~l~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~---~~~~~~ 244 (396)
T PRK08163 168 VRQQLVGDAPRVTGHVVYRAVIDVDDMPEDLRINAPVLWAGPHCHLVHYPLRGGEQYNLVVTFHSREQEEW---GVKDGS 244 (396)
T ss_pred HHHHHCCCCCCCCCEEEEEEEEECCCCCHHHCCCCEEEEECCCCEEEEEECCCCCEEEEEEEECCCCCCHH---CCCCCC
T ss_conf 88983699864245179999987023850013574089856994599987689948999999457772000---368668
Q ss_pred HHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHHHHHHHHCC--
Q ss_conf 389898632128022201100233210123346542101468711211111244830334201303679999998524--
Q gi|254780168|r 235 KEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGK-- 312 (380)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~-- 312 (380)
++.+.+.|.+|+|.+.++++....+..|+++.+.+.+.|+++||+|+|||||+|+|+.|||+|+|||||++|+++|..
T Consensus 245 ~~~l~~~~~~~~p~~~~ll~~~~~~~~~~~~~~~~~~~w~~gRv~LiGDAAH~m~P~~GQGan~aieDA~~La~~L~~~~ 324 (396)
T PRK08163 245 KEEVLSYFEGIHPRPRQMLDKPTSWKRWATADREPVAKWSTGRATLLGDAAHPMTQYMAQGACMALEDAVTLGAALERCD 324 (396)
T ss_pred HHHHHHHHHHCCHHHHHHHHCCCCEEEEEEECCCCHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 99999987533767999982755222344530342112037848985040246798536618789999999999997678
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHCCHHHCCCCCC
Q ss_conf 89899999999986799999999999988983678989999999998515333777204375898899
Q gi|254780168|r 313 KTIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRPASLFRNAGLRLGIHKPLHKSLDWIYQYKIPE 380 (380)
Q Consensus 313 ~~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~l~wl~~~~~~~ 380 (380)
.+++++|+.||++|+||+++|+..|+.++++||.++|.+.+||.+|+......+.++++|||+||..+
T Consensus 325 ~~~~~al~~Ye~~R~pR~~~v~~~s~~~~~~~h~~~~~~~~R~~~~~~~~~~~~~~~~~wly~y~~~~ 392 (396)
T PRK08163 325 GDFEAAFALYESVRIPRTARVVLSAREMGRIYHAAGVERQVRNLLWKGRTQEQFYDGLEWLYGWKEDN 392 (396)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHH
T ss_conf 88999999999999999999999999989986888665889999984089868643179601578553
No 3
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=100.00 E-value=0 Score=472.21 Aligned_cols=368 Identities=25% Similarity=0.382 Sum_probs=282.7
Q ss_pred CEECCHHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCC----CCCCCEEEEECCC
Q ss_conf 38775389999999999779-859999568765557713667888999999889947898626----8843069997885
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRG-IQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDIW----IEPEDFVFRSGST 75 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G-~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~----~~~~~~~~~~~~~ 75 (380)
+||||||+||++|+.|+|+| ++|+||||++.+++.|+||+|+||++++|++||+.+.+.+.+ .+...+.+. ...
T Consensus 4 ~IVGaGiaGL~lA~~L~r~g~i~V~V~Er~~~~~~~GagI~l~pn~~r~L~~lGl~~~~~~~~~~~~~~~~~~~~~-~~~ 82 (414)
T TIGR03219 4 AIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFE-WRN 82 (414)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEECHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEE-ECC
T ss_conf 9999448999999999853999889994289888883299999899999998799169999862268764205787-315
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCC------CCCCCCCCCCCEEEEEEEEEC
Q ss_conf 44333455432344447824786200013478899732068725642101234------432112345310356899743
Q gi|254780168|r 76 LKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITH------PDCTQISKINNQKPDLLVGAD 149 (380)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~------~~~~~~~~~~~~~adlvIgAD 149 (380)
+.....+.. . ...+.....|+|.+|.++|.+.+.+.. ++++++++. ...+.++||++.++|+|||||
T Consensus 83 ~~~~~~~~~--~--~~~~~~~~~i~R~~L~~~L~~~~~~~~---~~~~~~v~~v~~~~~~v~v~f~dG~~~~aDlVVGAD 155 (414)
T TIGR03219 83 GSDASYLGA--T--IAPGVGQSSVHRADFLDALLKHLPEGI---ASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGAD 155 (414)
T ss_pred CCCCCCCCC--C--CCCCCCCCEECHHHHHHHHHHHCCCCE---EEECCEEEEEEEECCEEEEEECCCCEEECCEEEECC
T ss_conf 776321253--2--357888542849999999985476667---796989999999589279998799887226899747
Q ss_pred CCCCCCHHHCC------CCCCCCCCCEEEEEECCCCCCCCCCC--------CCCEEEEECCCCEEEEEEECCCCEEEEEE
Q ss_conf 67663121128------53344311015786036544655456--------67608997654057888404897379999
Q gi|254780168|r 150 GLNSNIRHYID------TQPITFSGDVVLRCLIPQNNAPEFID--------FQSVNIFFGPDSHLVTYPLREDNTINMVF 215 (380)
Q Consensus 150 G~~S~vR~~l~------~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 215 (380)
|++|+||+.+. ...+.|+|..+|+++++.....+... .+...+|+|++++++.||+++++.+++++
T Consensus 156 Gi~S~vR~~~~~~~~~~~~~p~~~g~~~~r~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~ 235 (414)
T TIGR03219 156 GIKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYLGLDGHILTFPVRQGRLINVVA 235 (414)
T ss_pred CCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECHHHCCHHHHCCCCCCCCCCCCEEEECCCCEEEEEECCCCCEEEEEE
T ss_conf 64236788873346788777511465999999716760202202566521256743897489769999807997899999
Q ss_pred EECCCCCCCCCC----CCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCC
Q ss_conf 845774211123----4553222389898632128022201100233210123346542101468711211111244830
Q gi|254780168|r 216 VSSKHTLKDISF----LKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPF 291 (380)
Q Consensus 216 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~ 291 (380)
+........... ....+..++.+++.|.+|.+.++.++..++....|++++++..++|++|||+|||||||+|+|+
T Consensus 236 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~w~l~~~~~l~~w~~GRVvLiGDAAHam~P~ 315 (414)
T TIGR03219 236 FISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARALLECIPAPTLWALHDLAELPGYVHGRVALIGDAAHAMLPH 315 (414)
T ss_pred EECCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCC
T ss_conf 97476656667755565446204999999866898789999971984436556403667752038689984022446877
Q ss_pred HHHHHCCCHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 334201303679999998524-----898999999999867999999999999889836789899999999985153337
Q gi|254780168|r 292 AAQGANMAIEDAYALSYLLGK-----KTIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRPASLFRNAGLRLGIHKPL 366 (380)
Q Consensus 292 ~GqG~n~al~Da~~La~~L~~-----~~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~~~~~~~r~~~l~~~~~~~~ 366 (380)
.|||+|||||||++||++|++ .+++++|+.||+.|+||+++||..|+.+++++|+..|....++..++ ..+
T Consensus 316 ~GQGa~~AiEDA~vLa~~L~~~~~~~~~~~~al~~Ye~~R~~R~~~v~~~sr~~~~~~~~~~~~~~~~~~~~~----~~~ 391 (414)
T TIGR03219 316 QGAGAGQGLEDAYFLARLLGDTELEAGDLPALLEAYDDVRRPRACRVQRTSREAGELYELRDPAVGADEELLG----AHL 391 (414)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHH----HHH
T ss_conf 5651788999999999987402577446999999999999999999999999999986488856622088878----766
Q ss_pred HHHCCHHHCCCCCC
Q ss_conf 77204375898899
Q gi|254780168|r 367 HKSLDWIYQYKIPE 380 (380)
Q Consensus 367 ~~~l~wl~~~~~~~ 380 (380)
..+++|||+||+.+
T Consensus 392 ~~~~~wi~~~D~~~ 405 (414)
T TIGR03219 392 ATRFDWLWNHDLDQ 405 (414)
T ss_pred HHHHCHHHHCCHHH
T ss_conf 54527203179799
No 4
>PRK06753 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=467.46 Aligned_cols=359 Identities=20% Similarity=0.294 Sum_probs=294.2
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 38775389999999999779859999568765557713667888999999889947898626884306999788544333
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELS 80 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
+||||||+||++|+.|+++|++|+||||++.+++.|+|++|+|+++++|+++|+++++...+.+...+.+++.. +..+.
T Consensus 4 ~IVGaGiaGL~~A~~L~~~G~~v~V~Er~~~~~~~g~gi~l~~~~l~~L~~~gl~~~l~~~~~~~~~~~~~~~~-g~~~~ 82 (373)
T PRK06753 4 AIIGAGIGGLTAAALLQEQGHTVKVFEKNESVTEIGAGIGIGDNVLKKLGNHDLAKGIKNAGQILSTMNVLDDK-GTLLT 82 (373)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCCEEEEEECC-CCEEE
T ss_conf 99994589999999999779999998889998877619998899999999879848999607787329999099-98967
Q ss_pred CCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC------CCCCCCCCCCEEEEEEEEECCCCCC
Q ss_conf 4554323444478247862000134788997320687256421012344------3211234531035689974367663
Q gi|254780168|r 81 RFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP------DCTQISKINNQKPDLLVGADGLNSN 154 (380)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~------~~~~~~~~~~~~adlvIgADG~~S~ 154 (380)
.... ....+...++|.+|.++|.+.+.+. .++++++++.. ..+.++++++.++|+||||||++|+
T Consensus 83 ~~~~------~~~~~~~~i~R~~L~~~L~~~~~~~---~i~~~~~~~~i~~~~~~v~v~~~dg~~~~~DlvVGADG~~S~ 153 (373)
T PRK06753 83 KVKL------KSNTLNVTLPRQTLIDIIKSYVKED---TIFTNHEVTKIENETDKVTIHFAEQESEAFDLCIGADGIHSV 153 (373)
T ss_pred EEEC------CCCCCEEEECHHHHHHHHHHHCCCC---EEEECCEEEEEEEECCEEEEEECCCCEEEEEEEEECCCCCCH
T ss_conf 6204------7788348980999999998747458---799588999999309989999879979888799974887767
Q ss_pred CHHHCCCC-CCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 12112853-34431101578603654465545667608997654057888404897379999845774211123455322
Q gi|254780168|r 155 IRHYIDTQ-PITFSGDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKRSEI 233 (380)
Q Consensus 155 vR~~l~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (380)
||++++.+ +..|+++++|+++++..+.+ ..+....++++++++.++|+++++.+|++.+...+..... ...
T Consensus 154 vR~~l~~~~~~~~~g~~~~r~~~~~~~~~---~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~-----~~~ 225 (373)
T PRK06753 154 VRQSVNADSKVRYQGYTCFRGLIDDIDLK---HPDCAKEYWGRKGRVGIVPLLNNQAYWFITINAKENDPKY-----SSF 225 (373)
T ss_pred HHHHHCCCCCCCCCCEEEEEEEEECCCCC---CCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCC-----CCC
T ss_conf 88863678897775728999996133258---9763167855997699999139968999998467788222-----335
Q ss_pred CHHHHHHHHHHCCCCCCEEEECCCC--CCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHHHHHHHHC
Q ss_conf 2389898632128022201100233--21012334654210146871121111124483033420130367999999852
Q gi|254780168|r 234 HKEWFVKHLTNWHQEIIQLILQIND--THLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLG 311 (380)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~ 311 (380)
.++.+.+.+..|.+.+.++++...+ ...++++...+.++|.++||+|+|||||+|+|+.|||+|+|||||++||++|.
T Consensus 226 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~grvvLiGDAAH~m~P~~GQGan~aieDA~~LA~~L~ 305 (373)
T PRK06753 226 GKPHLQAYFNHYPNEVREILDKQSETGILLHDIYDLKPLKSFVYGRTILLGDAAHATTPNMGQGAGQAMEDAIVLVNCFN 305 (373)
T ss_pred CHHHHHHHHHHCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 73999999850878899999837845616701334543332305858998112355697400017799999999999986
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHCCHHHCCC
Q ss_conf 48989999999998679999999999998898367898-9999999998515333777204375898
Q gi|254780168|r 312 KKTIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRP-ASLFRNAGLRLGIHKPLHKSLDWIYQYK 377 (380)
Q Consensus 312 ~~~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~~~-~~~~r~~~l~~~~~~~~~~~l~wl~~~~ 377 (380)
+.+++++|+.||++|+||++++++.|+.+++++|.++| .+++||.+||++....+.++++|+|+++
T Consensus 306 ~~~~~~aL~~Ye~~R~~r~~~v~~~s~~~~~~~~~~~~~~~~~Rn~~l~~~p~~~~~~~~~~~~~~~ 372 (373)
T PRK06753 306 AYDFEKALQRYDKIRVKHTAKVIKRSRKIGKIAQYRSKLLVAVRNRIMKMMPNALAAGQTKFLYKSK 372 (373)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHCHHHCCC
T ss_conf 0699999999999999999999999999756751598289999999998698989874413443158
No 5
>PRK07588 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=424.61 Aligned_cols=360 Identities=20% Similarity=0.279 Sum_probs=273.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 38775389999999999779859999568765557713667888999999889947898626884306999788544333
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELS 80 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
+||||||+||++|+.|+++|++|+||||++.+++.|++|.|+|+++++|++||++|++.+.+.+...+.+.+ .+++...
T Consensus 4 lIvGaGiaGLalA~~L~r~G~~v~V~Er~~~~r~~G~~i~l~~~~~~vl~~lGl~d~l~~~~~~~~~~~~~~-~~G~~~~ 82 (391)
T PRK07588 4 AISGAGIAGATLAHWLQRTGHEPTLIERAPKLRTGGYMVDFWGVGYEVAKRMGITDQLAEAGYQIEHIRSVG-PTGRVKA 82 (391)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCHHHHHHHHCCCHHHHHHCCCCCEEEEEEC-CCCCEEE
T ss_conf 999932899999999986899989990389888773387238399999998799389985278850699999-9998887
Q ss_pred CCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC------CCCCCCCCCCEEEEEEEEECCCCCC
Q ss_conf 4554323444478247862000134788997320687256421012344------3211234531035689974367663
Q gi|254780168|r 81 RFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP------DCTQISKINNQKPDLLVGADGLNSN 154 (380)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~------~~~~~~~~~~~~adlvIgADG~~S~ 154 (380)
.++...+. ...+.++..|+|.+|.++|.+.++. .++++++++++.. ..++++++++.++|+||||||++|+
T Consensus 83 ~~~~~~~~-~~~~~~~~~i~R~dL~~~L~~~~~~--~v~v~~g~~v~~i~~~~dgV~v~f~dG~~~~~DlvVGADGi~S~ 159 (391)
T PRK07588 83 DLNVDVFR-RMVGDDFTSLPRGDLAATIYTTIEG--QVETIFDDSIATIDEHRDGVRLTLERGTPRDFDLVIGADGLHSH 159 (391)
T ss_pred ECCCHHHC-CCCCCCCEEECHHHHHHHHHHHCCC--CCEEEECCEEEEEEECCCEEEEEECCCCEEEEEEEEECCCCCCH
T ss_conf 43712311-1347752145399999999975144--87899799999999629958999879988887599954876407
Q ss_pred CHHHCCCCCCCCC---CCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 1211285334431---1015786036544655456676089976540578884048973799998457742111234553
Q gi|254780168|r 155 IRHYIDTQPITFS---GDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKRS 231 (380)
Q Consensus 155 vR~~l~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (380)
||+.+......+. +.......++.. ...+......|.+++.+++.||++++..++++....++.... ...
T Consensus 160 vR~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~ 232 (391)
T PRK07588 160 VRRLVFGPERDFEHYLGCKVAACVVDGY---RPRDERTYVLYNTVDKQVARVALRGDRTLFLFIFRAEHDNPP----LTP 232 (391)
T ss_pred HHHHHCCCCCCCCCCEEEEEEEEEECCC---CCCCCCEEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCC----CCH
T ss_conf 7787448888874302489999983576---777774799998699889999826992899999967877888----881
Q ss_pred CCCHHHHHHHHHHCCCCCCEEEECCCCCC--CCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHHHHHHH
Q ss_conf 22238989863212802220110023321--0123346542101468711211111244830334201303679999998
Q gi|254780168|r 232 EIHKEWFVKHLTNWHQEIIQLILQINDTH--LYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYL 309 (380)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~ 309 (380)
+..++.+.+.|.++.+++.+++..+.+.. .|..+.....+.|++|||+|+|||||+|+|+.|||+|+||+||++||++
T Consensus 233 ~~~~~~l~~~f~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~W~~GRV~LlGDAAH~~~P~~GqGan~AieDA~vLA~~ 312 (391)
T PRK07588 233 KEEKQLLRDQFGDVGWESRDILAALDDVDDLYFDVVSQIRMDRWSRGRVLLVGDAAACISLLGGEGTGLAITEAYVLAGE 312 (391)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 77999999986444863389997546630025320001324434359889971555667997662387999999999999
Q ss_pred HCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHCC
Q ss_conf 524--8989999999998679999999999998898367898-9999999998515333777204
Q gi|254780168|r 310 LGK--KTIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRP-ASLFRNAGLRLGIHKPLHKSLD 371 (380)
Q Consensus 310 L~~--~~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~~~-~~~~r~~~l~~~~~~~~~~~l~ 371 (380)
|.+ .+++++|+.||++|+|++.++|..++.+..+|+.+++ ..++|+.+++++...|+.+.+.
T Consensus 313 L~~~~~d~~~Al~~YE~~rrp~v~~~q~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (391)
T PRK07588 313 LARAGGDHRRAFDAYEKRLRPFIAGKQASAAKFLWVFASDTIFGKYFSTITMRISNTPPISKFIG 377 (391)
T ss_pred HHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 98748998999999999767899999875651231115998899999999999847631666750
No 6
>PRK06847 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=416.37 Aligned_cols=342 Identities=23% Similarity=0.302 Sum_probs=259.2
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 38775389999999999779859999568765557713667888999999889947898626884306999788544333
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELS 80 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
+||||||+||++|+.|+++|++|+|||+++.++..|+++.++|+++++|+++|+++++.+.+.+...+.+++. .+..+.
T Consensus 8 ~IVGaG~aGL~lA~~L~~~Gi~v~V~E~~~~~~~~g~gi~l~~~~~~~L~~lGl~~~i~~~~~~~~~~~~~~~-~G~~~~ 86 (375)
T PRK06847 8 LIVGGGIGGMSAAIALRKAGISVDLVEIDPEWRPYGAGITLQGNTLRALKELGVLDECLEHGFGFDGVDIFDP-AGHLLA 86 (375)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEC-CCCEEE
T ss_conf 9999668999999999967999999908999888860898898999999987995899960788522999968-998899
Q ss_pred CCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC----C--CCCCCCCCCEEEEEEEEECCCCCC
Q ss_conf 4554323444478247862000134788997320687256421012344----3--211234531035689974367663
Q gi|254780168|r 81 RFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP----D--CTQISKINNQKPDLLVGADGLNSN 154 (380)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~----~--~~~~~~~~~~~adlvIgADG~~S~ 154 (380)
..+........+ .....|+|..|.++|.+.++.. .++++++++++.. + .++++|+++.++|+||||||++|+
T Consensus 87 ~~~~~~~~~~~~-~~~~~i~r~~L~~~L~~~~~~~-~~~v~~~~~v~~i~~~~~~v~v~~~dG~~~~adllIGADG~~S~ 164 (375)
T PRK06847 87 EVPTPRVAGDDV-PGGGGIMRPTLARILADAARAS-GVDVRLGTTVTAIEQDDDGVDVTFTDGTTGRYDLVVGADGVYSK 164 (375)
T ss_pred EECCHHHCCCCC-CCEEEEEHHHHHHHHHHHHHHC-CCEEEECCEEEEEEECCCEEEEEECCCCEEEEEEEEECCCCCCH
T ss_conf 834312035667-7212770999999999989846-99799665897866649858999858988998799985787627
Q ss_pred CHHHCCCC--CCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 12112853--3443110157860365446554566760899765405788840489737999984577421112345532
Q gi|254780168|r 155 IRHYIDTQ--PITFSGDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKRSE 232 (380)
Q Consensus 155 vR~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (380)
||+++..+ .+.|.++.+|++.++.. ........|+++++++.++|+.++..++++....+.... ...+
T Consensus 165 vR~~l~~~~~~~~~~g~~~~~~~~p~~-----~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-----~~~~ 234 (375)
T PRK06847 165 VRSLVFPEEPKPEYTGQGVWRAVLPRP-----AEIDRTLMYLGGTGKAGVNPLSEDEMYMFVTEPRPSDDR-----IEPA 234 (375)
T ss_pred HHHHHCCCCCCCCCCCEEEEEEEECCC-----CCCCCEEEEECCCCEEEEEECCCCEEEEEEEECCCCCCC-----CCCC
T ss_conf 889727777787042338999991687-----677843999969944999983799199999946863124-----6831
Q ss_pred CCHHHHHHHHHHCCCCCCEE----EECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHHHHHH
Q ss_conf 22389898632128022201----10023321012334654210146871121111124483033420130367999999
Q gi|254780168|r 233 IHKEWFVKHLTNWHQEIIQL----ILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSY 308 (380)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~----i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~ 308 (380)
...+.+.+.+..+..+.... +........+|+.......+|+++||+|+|||||+|+|+.|||+|+||+||++||+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~gRv~LiGDAAH~~~P~~GqG~N~aieDA~~La~ 314 (375)
T PRK06847 235 TWPDRLRELLAPFGGPVLEALTEHITEDAHVVYRPLEQLLVPEPWHRGRVVLIGDAVHATTPHLASGAGMAIEDAIVLAE 314 (375)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEHHHHCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 37999999986547657889987605555436646445115664024879999801123798523588899999999999
Q ss_pred HHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 8524-8989999999998679999999999998898367898999999
Q gi|254780168|r 309 LLGK-KTIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRPASLFRN 355 (380)
Q Consensus 309 ~L~~-~~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~~~~~~~r~ 355 (380)
+|.+ .+++++|+.||++|+||+++++..|+.+++++...++.+..+.
T Consensus 315 ~La~~~~~~~aL~~Ye~~R~~r~~~vv~~s~~~gr~~~~~~~~~~~~~ 362 (375)
T PRK06847 315 ELARHDDLEAALQAYQERRWERCRMVVENSARIGRIEIKGGDGAEHSE 362 (375)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 980799989999999999999999999999997568863898066899
No 7
>PRK07538 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=409.65 Aligned_cols=334 Identities=26% Similarity=0.365 Sum_probs=254.9
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 38775389999999999779859999568765557713667888999999889947898626884306999788544333
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELS 80 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
+||||||+||++|+.|+++|++|+|||+++.+++.|+||.|+|+++++|+++|+++++.+.+++...+.+++. .+..+.
T Consensus 4 ~IvGaG~aGL~lA~~L~~~Gi~v~V~E~~~~~~~~G~gI~l~p~a~~~L~~lGl~~~l~~~g~~~~~~~~~~~-~G~~i~ 82 (413)
T PRK07538 4 LIAGGGIGGLTLALTLHQRGIEVEVFEAAPELRPLGVGINLLPHAVRELAELGLLEALDAVGIRTRELVFFNR-HGQRIW 82 (413)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCCEEEEECC-CCCEEE
T ss_conf 9999058999999999978999899936998887852875187999999987897899862777632799969-998987
Q ss_pred CCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHC-CCEEEEEEECCCCCC----CC--CC-----CCCCCEEEEEEEEE
Q ss_conf 45543234444782478620001347889973206-872564210123443----21--12-----34531035689974
Q gi|254780168|r 81 RFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQ-PLARLHLSTHITHPD----CT--QI-----SKINNQKPDLLVGA 148 (380)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-~~~~~~~~~~v~~~~----~~--~~-----~~~~~~~adlvIgA 148 (380)
..+.. ....+..+.+.|+|.+|+++|.+.+.+. +...++++++++..+ ++ .+ .++++++||+||||
T Consensus 83 ~~~~g--~~~g~~~p~~~i~R~~L~~~L~~~~~e~lg~~~i~~g~~v~~~~~~~~~v~~~~~~~~~~~~~~~~adllVGA 160 (413)
T PRK07538 83 SEPRG--LAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDAGVTVVFLGDRAGGDLVSVRADVLIGA 160 (413)
T ss_pred ECCCC--CCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCCEEEEEECCCCCCCEEEEECEEEEC
T ss_conf 33466--4457888525650999999999999975699689967789898874995299997157887239984889988
Q ss_pred CCCCCCCHHHCCC--CCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCC------CEEEEEEEECCC
Q ss_conf 3676631211285--33443110157860365446554566760899765405788840489------737999984577
Q gi|254780168|r 149 DGLNSNIRHYIDT--QPITFSGDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLRED------NTINMVFVSSKH 220 (380)
Q Consensus 149 DG~~S~vR~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~------~~~~~~~~~~~~ 220 (380)
||++|+||+++.. .++.|+|..+|++.++... ..+........+++..+++||+.++ ..++|+......
T Consensus 161 DGi~S~VR~~l~p~~~~~~~~g~~~wrg~~~~~~---~~~~~~~~~~~~~~~~~v~yPi~~~~~~~g~~~~~w~~~~~~~ 237 (413)
T PRK07538 161 DGIHSAVRAQLYPDEGPPRWNGVLMWRGVTRAPP---FLTGASMVRAGHLTGKLVVYPISEPVDADGLQLINWVAEVRVP 237 (413)
T ss_pred CCCCCHHHHHHCCCCCCCEEEEEEEEEEEEECCC---CCCCCEEEEEECCCCEEEEEECCCCCCCCCCEEEEEEEEECCC
T ss_conf 8987524577448899953500699999851676---6788628998179943999963688777762589999996168
Q ss_pred CCCC-CCCCCCCCCCHHHHHHHHHHCCCC---CCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHH
Q ss_conf 4211-123455322238989863212802---220110023321012334654210146871121111124483033420
Q gi|254780168|r 221 TLKD-ISFLKRSEIHKEWFVKHLTNWHQE---IIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGA 296 (380)
Q Consensus 221 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~ 296 (380)
.... ...........+.+.+.+.+|..+ +..++...+....||+.++.+.++|++|||+|+|||||+|+|++|||+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~li~~~~~~~~~pl~dr~pl~~w~~GRV~LiGDAAH~m~P~~GqGa 317 (413)
T PRK07538 238 DTEAPRREDWNRPGRLEDFLPHFAGWRFDWLDVPALIRGAEAIYEYPMVDRDPLPRWTRGRVTLLGDAAHPMYPVGSNGA 317 (413)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCCEEECCEEECCCCCCCCCCCEEEEEHHHHHCCCCCCCHH
T ss_conf 76665521134666899999985467876130999984486245411230566774022899998865315875620178
Q ss_pred CCCHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1303679999998524-8989999999998679999999999998
Q gi|254780168|r 297 NMAIEDAYALSYLLGK-KTIPAAISAYQKVRAVRVKRIRYRTKLN 340 (380)
Q Consensus 297 n~al~Da~~La~~L~~-~~~~~~l~~Y~~~R~~~~~~i~~~s~~~ 340 (380)
|+||+||++|+++|.. .+.+++|+.||++|+|++.+|+..+|.+
T Consensus 318 n~AieDA~~La~~La~~~~~~~aL~aYe~~Rrp~~~~vv~~~R~~ 362 (413)
T PRK07538 318 SQAILDARALADALAAHGDPEAALAAYEAERRPATAQIVLANRLN 362 (413)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHC
T ss_conf 799999999999986189989999999998787999999998700
No 8
>PRK07045 putative monooxygenase; Reviewed
Probab=100.00 E-value=0 Score=394.84 Aligned_cols=350 Identities=22% Similarity=0.320 Sum_probs=246.7
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 38775389999999999779859999568765557713667888999999889947898626884306999788544333
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELS 80 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
+||||||+||++|+.|+++|++|+||||++.++..++++.|+|+++++|+++|+++++...+......... ..++..+.
T Consensus 9 lIvGaG~aGl~lA~~L~r~G~~v~v~E~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~~~~~~~~~~~~~~~-~~~g~~~~ 87 (388)
T PRK07045 9 LINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRL-YHDKELIA 87 (388)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCEEEEEEE-ECCCCEEE
T ss_conf 99992889999999998679989999089987777863488999999999886968998607851457999-50895798
Q ss_pred CCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC----C----CCCCCCCCCEEEEEEEEECCCC
Q ss_conf 4554323444478247862000134788997320687256421012344----3----2112345310356899743676
Q gi|254780168|r 81 RFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP----D----CTQISKINNQKPDLLVGADGLN 152 (380)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~----~----~~~~~~~~~~~adlvIgADG~~ 152 (380)
.++..... ..+ .+..+++..|.+.|.+.+...+.+.++++++++.. + .+++.++++.++|+||||||++
T Consensus 88 ~~~~~~~~--~~~-~~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~v~~v~~~~~~~~~~v~~~dG~~~~adlvIGADG~~ 164 (388)
T PRK07045 88 SLDYRSAS--ALG-YFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGAR 164 (388)
T ss_pred EECCCCCC--CCC-CEEEECHHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCEEEEEEECCCCEEEEEEEEECCCCC
T ss_conf 74455566--668-389830999999999997458981999798999999849925999995899799740999956886
Q ss_pred CCCHHHC-CCC--CCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECC-CCEEEEEEECCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 6312112-853--3443110157860365446554566760899765-40578884048973799998457742111234
Q gi|254780168|r 153 SNIRHYI-DTQ--PITFSGDVVLRCLIPQNNAPEFIDFQSVNIFFGP-DSHLVTYPLREDNTINMVFVSSKHTLKDISFL 228 (380)
Q Consensus 153 S~vR~~l-~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 228 (380)
|+||+.+ +.+ ...|.....+ +.+..... ..+....|+.+ ++...++|+.++.. ++++..+.+...+..
T Consensus 165 S~vR~~l~~~~~~~~~y~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~p~~~~~~~~-- 236 (388)
T PRK07045 165 SMIRDDVLRMPAERVPYATPMAF-GTIALTDS----VRECNRLYVDSNQGLAYFYPIGDQAT-RLVVSFPADEMQGYL-- 236 (388)
T ss_pred CHHHHHHHCCCCCCEECCCEEEE-EEEECCCC----CCCCEEEEEECCCCEEEEEECCCCCE-EEEEEEECHHHHHHC--
T ss_conf 27889872898520123522899-99982588----77633899907992899997599919-999996050544420--
Q ss_pred CCCCCCHHHHHHHHHHCC----CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHH
Q ss_conf 553222389898632128----0222011002332101233465421014687112111112448303342013036799
Q gi|254780168|r 229 KRSEIHKEWFVKHLTNWH----QEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAY 304 (380)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~ 304 (380)
.+...+.+.+.+..+. ++....+........+|+....+.+ |.++||+|+|||||+|+|+.|||+|+||+||+
T Consensus 237 --~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~-~~~grvvLiGDAAH~~~P~~GQG~N~aieDA~ 313 (388)
T PRK07045 237 --ADTTRTKLLARLNEFVGDESADAMAAIGAGTAFPLIPLGRMNLDR-YHKRNVVLLGDAAHSIHPITGQGMNLAIEDAG 313 (388)
T ss_pred --CCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEEEEEEEECHH-HCCCCEEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf --456679999999977272025587651655404662413688213-14585799960004589850216878999999
Q ss_pred HHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHCCCH
Q ss_conf 99998524-----89899999999986799999999999988983678989-999999998515333
Q gi|254780168|r 305 ALSYLLGK-----KTIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRPA-SLFRNAGLRLGIHKP 365 (380)
Q Consensus 305 ~La~~L~~-----~~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~~~~-~~~r~~~l~~~~~~~ 365 (380)
+|+++|.. .+.+++|+.||++|+|+++.++..++.+.++||..+|. ..+||.+....+...
T Consensus 314 ~La~~L~~~~~~~~~~~~~L~~Ye~~Rrp~~~~v~~~~~~~~~l~~~~~~l~~~~R~~~~~~~~~~~ 380 (388)
T PRK07045 314 ELGACLDLHLSGQIALADALERFERIRRPVNEAVISYGHALATTYHDRAALVANFRSQLQTSGRDAA 380 (388)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHH
T ss_conf 9999999986799775999999999871899999999999999866675378999999874488333
No 9
>PRK09126 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=388.86 Aligned_cols=355 Identities=21% Similarity=0.309 Sum_probs=262.0
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCC-----CCCCCCEEEECHHHHHHHHHCCCHHHHHHCCC-CCCCEEEEECC
Q ss_conf 3877538999999999977985999956876-----55577136678889999998899478986268-84306999788
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQ-----LSDSGFGIQISPNASRILKRIGILDQLEDIWI-EPEDFVFRSGS 74 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~-----~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~-~~~~~~~~~~~ 74 (380)
+||||||+||++|+.|+++|++|+|+||++. +...+++++|+++++++|+++|+|+++.+... +...+.+.++.
T Consensus 7 ~IvGaGp~Gl~lA~~La~~G~~v~viE~~~~~~~~~~~~~~r~~al~~~s~~~L~~lG~~~~l~~~~~~~~~~~~~~~~~ 86 (392)
T PRK09126 7 LVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEAEISPLRDAKVLNGR 86 (392)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCEEEEEEECCC
T ss_conf 99992589999999998689989999089853345778886289868999999998789667775076741468995288
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC----C--CCCCCCCCCEEEEEEEEE
Q ss_conf 5443334554323444478247862000134788997320687256421012344----3--211234531035689974
Q gi|254780168|r 75 TLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP----D--CTQISKINNQKPDLLVGA 148 (380)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~----~--~~~~~~~~~~~adlvIgA 148 (380)
....+ .++..+.... ...+.+++..+.+.|.+.+.+.+++.+.++++|+.. + .+.++++++++|||||||
T Consensus 87 ~~~~l-~~~~~~~~~~---~lg~~v~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~~~~g~~i~a~llVgA 162 (392)
T PRK09126 87 SPFAL-TFDARGTGAD---ALGYLVPNHLIRRAAYEAVSQQPGIEILTGHRVKAVTHSDDGAQVTLANGRRLTARLLVAA 162 (392)
T ss_pred CCEEE-EECCCCCCCC---CCCEECCHHHHHHHHHHHHHHCCCCEEECCCEEEEEEECCCEEEEEECCCCEEEEEEEEEE
T ss_conf 75047-5047556766---6500021999999999999858996998698889999759805999858988887799980
Q ss_pred CCCCCCCHHHCCCCCC-CCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCC
Q ss_conf 3676631211285334-431101578603654465545667608997654057888404897379999845774211123
Q gi|254780168|r 149 DGLNSNIRHYIDTQPI-TFSGDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISF 227 (380)
Q Consensus 149 DG~~S~vR~~l~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 227 (380)
||++|.||++++.... ...++.++.+.+.... .+.+....|+++++.++++|++++ .++++|..+++.......
T Consensus 163 DG~~S~vR~~lgi~~~~~~~~~~~~v~~~~~~~----~~~~~a~~~f~~~~~~a~lP~~~~-~~~~v~~~~~~~~~~~~~ 237 (392)
T PRK09126 163 DSRFSATRRQLGIGAQMHDFGRTMLVCRMRHEL----PHHHTAWEWFGYGRTLALLPLNGG-LSSLVLTLPPDQIEALLA 237 (392)
T ss_pred CCCCCHHHCCCCCCCCCCCCCCEEEEEEEEECC----CCCCEEEEEECCCCCEEEEECCCC-CEEEEEEECHHHHHHHHH
T ss_conf 688861110377786234146269999986047----875048999649996799964999-279999827155898870
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHHHHH
Q ss_conf 45532223898986321280222011002332101233465421014687112111112448303342013036799999
Q gi|254780168|r 228 LKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALS 307 (380)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La 307 (380)
... +...+.+.+.+.+. ...+........||+.... .+.|.++||+|+|||||+|||++|||+|+||+||.+|+
T Consensus 238 ~~~-~~~~~~l~~~~~~~----~g~~~~~~~~~~~pl~~~~-a~~~~~~Rv~LiGDAAH~~~P~~GQG~Nlgl~Da~~La 311 (392)
T PRK09126 238 LDP-EAFAAEVTAQFKGR----LGAMRLVSSRHAYPLVAVY-AHRFVAKRFALIGDAAVGMHPVTAHGFNLGLASQDILA 311 (392)
T ss_pred CCH-HHHHHHHHHHHHHH----CCCCEECCCCEECCHHHHH-HHHHHCCCCEEEEHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 999-99999999864201----3643240331224135422-55652478589870321379741462757899999999
Q ss_pred HHHCC-----C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHC
Q ss_conf 98524-----8--989999999998679999999999998898367898-999999999851533377720
Q gi|254780168|r 308 YLLGK-----K--TIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRP-ASLFRNAGLRLGIHKPLHKSL 370 (380)
Q Consensus 308 ~~L~~-----~--~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~~~-~~~~r~~~l~~~~~~~~~~~l 370 (380)
++|.. . +.+..|+.|+++|++.+..++..+....++|..++| .+.+|+.+|+++++.|+.|++
T Consensus 312 ~~L~~~~~~~~d~g~~~~L~~Y~~~R~~~~~~~~~~t~~l~~~f~~~~~~~~~~R~~~l~~~~~~~~lk~~ 382 (392)
T PRK09126 312 KLILEAAARGQDIGAASLLERYERKHRLATRPLYHATNAIVALYTDDRPPARLLRRAVLRAANRLAPLKAL 382 (392)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 99999985389977699999999999999999999999999998799679999999999998408889999
No 10
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=0 Score=385.73 Aligned_cols=353 Identities=18% Similarity=0.208 Sum_probs=262.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCC-
Q ss_conf 3877538999999999977985999956876555771366788899999988994789862688430699978854433-
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKEL- 79 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (380)
+||||||+||++|+.|+++|++|+|+|+++... .++++++.+.++++|+++|+|+++...+.+...+.+.+... ..+
T Consensus 9 ~IvGaGp~Gl~lAl~La~~G~~v~lie~~~~~~-d~Ra~al~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~d~~~-~~~~ 86 (386)
T PRK07494 9 AVSGGGPAGLAAAIALASAGASVALVAPAPPYA-DLRTTALLGPSIRFLERLGVWARLAPHAAPLQSMRIVDATG-RLIR 86 (386)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC-CCCEEEECHHHHHHHHHCCCHHHHHHHCCCCEEEEEEECCC-CCCC
T ss_conf 999906899999999987899889995799888-88679986899999998898788875148522699996898-5113
Q ss_pred ---CCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCC----CC--CCCCCCCCCEEEEEEEEECC
Q ss_conf ---3455432344447824786200013478899732068725642101234----43--21123453103568997436
Q gi|254780168|r 80 ---SRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITH----PD--CTQISKINNQKPDLLVGADG 150 (380)
Q Consensus 80 ---~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~----~~--~~~~~~~~~~~adlvIgADG 150 (380)
.+++..+.... ...+.|++..|.+.|.+++.+.+++. +++++++. .+ .+++.++++++|||||||||
T Consensus 87 ~~~~~f~~~~~~~~---~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~v~v~~~dg~~i~a~llIgADG 162 (386)
T PRK07494 87 APEVRFRASEIGED---AFGYNIPNWLLNRALEARAAELPNID-RFDDEAESVRPRGDEVTVTLADGTTLSARLVVAADG 162 (386)
T ss_pred CCCCCCCHHHCCCC---CCEEECCHHHHHHHHHHHHHHCCCEE-EECCCEEEEEECCCEEEEEECCCCEEEEEEEEEECC
T ss_conf 76410353224776---63210126999999999997189979-977706899966984899978996999869999058
Q ss_pred CCCCCHHHCCCCCCCC-CCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCC
Q ss_conf 7663121128533443-110157860365446554566760899765405788840489737999984577421112345
Q gi|254780168|r 151 LNSNIRHYIDTQPITF-SGDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLK 229 (380)
Q Consensus 151 ~~S~vR~~l~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (380)
++|.||+.++...... .++.++.+.+.... .+.+....++.++++++++|++++ ..+++|+..+....+...
T Consensus 163 ~~S~vR~~~gi~~~~~~y~q~~~v~~v~~~~----p~~~~a~~~~~~~Gp~a~lPl~~~-~~~~vw~~~~~~~~~~~~-- 235 (386)
T PRK07494 163 RNSPAREAAGIGVRTWSYPQKALVFNFTHSR----PHENVSTEFHTEHGPFTQVPLPGR-RSSLVWVVRPAEAERLLA-- 235 (386)
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEEECCCC----CCCCEEEEEECCCCCEEEEECCCC-CEEEEEEECCHHHHHHHH--
T ss_conf 8874312257564446530127998531356----666323799659985899986999-569999936145898763--
Q ss_pred CCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHHHHHHH
Q ss_conf 53222389898632128022201100233210123346542101468711211111244830334201303679999998
Q gi|254780168|r 230 RSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYL 309 (380)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~ 309 (380)
...+.+.+.+....+.....+........||+.... .+.|.++||+|+|||||+|||++|||+|+||+||.+|+++
T Consensus 236 ---~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~pl~~~~-a~~~~~~Rv~LiGDAAH~~~P~aGQG~Nlgi~Da~~La~~ 311 (386)
T PRK07494 236 ---LSDAALSAAIEERSQSMLGKLTLEPGRQLWPLSGLV-PHRFAANRTALVGEAAHVFPPIGAQGLNLGLRDVADLVEI 311 (386)
T ss_pred ---CCHHHHHHHHHHHHHHHCCCEEECCCEEEEEHHHHH-HHHHHCCCEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf ---387999999999866415753751551560246411-5665168827861222237952200576669999999999
Q ss_pred HCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHC
Q ss_conf 524----8989999999998679999999999998898367898-999999999851533377720
Q gi|254780168|r 310 LGK----KTIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRP-ASLFRNAGLRLGIHKPLHKSL 370 (380)
Q Consensus 310 L~~----~~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~~~-~~~~r~~~l~~~~~~~~~~~l 370 (380)
|.. ...+..|+.|+++|++....++..+....++|..++| .+.+|+.+|..+++.|..|++
T Consensus 312 L~~~~~~~~~~~~L~~Y~~~Rr~~~~~~~~~~d~l~~~f~~~~~~~~~~R~~gl~~~~~~~~lk~~ 377 (386)
T PRK07494 312 VEDRGEDPGSAAVLAAYDRARRPDILSRTASIDLLNRSLLSDMLPAQDLRAAGLHLLYSFGPLRRL 377 (386)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 986445867499999999999899999999999999998589679999999999998528899999
No 11
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; InterPro: IPR010971 This entry represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway . A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions . In Escherichia coli, three enzyme activities have been described: UbiB (which acts first at position 6, see IPR010232 from INTERPRO), UbiH (which acts at position 4, ) and UbiF (which acts at position 5, ). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB) . Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homologue in this subfamily (COQ6, ) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050660 FAD binding, 0006744 ubiquinone biosynthetic process.
Probab=100.00 E-value=0 Score=388.37 Aligned_cols=357 Identities=25% Similarity=0.348 Sum_probs=288.8
Q ss_pred CEECCHHHHHHHHHHHHHCC-----CEEEEEECCCCCC----C-----CCCEEEECHHHHHHHHHCCCHHHHHH-CCCCC
Q ss_conf 38775389999999999779-----8599995687655----5-----77136678889999998899478986-26884
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRG-----IQSCVLEKKDQLS----D-----SGFGIQISPNASRILKRIGILDQLED-IWIEP 65 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G-----~~v~i~Er~~~~~----~-----~g~gi~l~p~~~~~L~~lGi~~~~~~-~~~~~ 65 (380)
+||||||+|+++|+.|++.+ ++|+|+|..+... . .++-++|++.|.++|+++|+|+.+.. +..+.
T Consensus 3 ~IvGgG~VG~~lA~aL~~~~~~~~~L~~~l~e~~~~~~~~~~~~~~~~D~R~~Al~~~S~~~L~~lG~W~~~~~~~~~p~ 82 (445)
T TIGR01988 3 VIVGGGMVGLALALALASSGSRLKGLKVALIEAQPAEAPSFFAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPI 82 (445)
T ss_pred EEECCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCHHHHHHHCCCC
T ss_conf 88847388999999984186312473179960521144221125876552201010799999986796445201212632
Q ss_pred CCEEEEECCCCC-----CCCCCCCCCCC--CCCCCCEEEEEECCHHHHHHHHHHHHCCC--EEEEEEECCC----C----
Q ss_conf 306999788544-----33345543234--44478247862000134788997320687--2564210123----4----
Q gi|254780168|r 66 EDFVFRSGSTLK-----ELSRFSCKNYS--RNNWGGIYGVVKRHTLQKILLNHIQTQPL--ARLHLSTHIT----H---- 128 (380)
Q Consensus 66 ~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~i~r~~l~~~L~~~~~~~~~--~~~~~~~~v~----~---- 128 (380)
+.|.+.++.+.. ...+|+..++. .+..| ++|+...+.+.|.+++.+.++ +.+.+..+++ +
T Consensus 83 ~~~~V~D~~~~g~~~~P~~~~F~~~~~~~~~~~LG---~~ven~~~~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (445)
T TIGR01988 83 RDIHVSDGGSFGRAPHPAALHFDADEVGGPAEALG---YVVENRVLQQALWEALQELPNEKVTLLCPARVEELPRHSSKN 159 (445)
T ss_pred CEEEEEECCCCCCCCCCEEEEECHHHCCCCCCCCC---EEECHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCCC
T ss_conf 04888726788888886368744344178801123---671188999999999996689647751672147740367756
Q ss_pred -CCC--CCCCCCCC---EEEEEEEEECCCCCCCHHHCCCCCCCC--CCCEEEEEECCCCCCCCCCCCCCEEEEECC-CCE
Q ss_conf -432--11234531---035689974367663121128533443--110157860365446554566760899765-405
Q gi|254780168|r 129 -PDC--TQISKINN---QKPDLLVGADGLNSNIRHYIDTQPITF--SGDVVLRCLIPQNNAPEFIDFQSVNIFFGP-DSH 199 (380)
Q Consensus 129 -~~~--~~~~~~~~---~~adlvIgADG~~S~vR~~l~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~ 199 (380)
.+. +++.+++. .+|+|||||||.||.||++++++...+ +.++++.+.|..... +......+|.| .|+
T Consensus 160 ~~~~v~~~L~~G~~~~~l~a~LlvgADG~~S~vR~~~gI~~~~~R~Y~Q~a~Va~v~~~~~----h~~~A~erF~~~~GP 235 (445)
T TIGR01988 160 DSDEVELTLSDGRQKLLLRARLLVGADGANSKVRQLAGIPTTGWRDYGQSAVVANVKHERP----HQGTAWERFLPDTGP 235 (445)
T ss_pred CCCCEEEEECCCCEEEEEEECEEEEECCCCHHHHHHHCCCCCEEECCCCEEEEEEEEECCC----CCCEEEEEEECCCCC
T ss_conf 8860799970894767898532787358652579971888430116455389999971478----896479998279985
Q ss_pred EEEEEECC--CCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCE--------------------------
Q ss_conf 78884048--97379999845774211123455322238989863212802220--------------------------
Q gi|254780168|r 200 LVTYPLRE--DNTINMVFVSSKHTLKDISFLKRSEIHKEWFVKHLTNWHQEIIQ-------------------------- 251 (380)
Q Consensus 200 ~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 251 (380)
++++|+.+ ++.+++||+.+++..+....+.. +.|.+.+......-..
T Consensus 236 ~AlLPL~~~dd~~~slVW~~~~~~A~~L~~l~~-----~~F~~~L~~~F~~~lG~~~~~~~~~~~l~~~~~~~~~~~~pp 310 (445)
T TIGR01988 236 LALLPLPDNDDNRSSLVWTLPPEEAERLLALDD-----EEFLAELNRAFGSRLGDLPYLDQTDFALNELFFRSSEEQYPP 310 (445)
T ss_pred EEECCCCCCCCCEEEEEEECCHHHHHHHHCCCH-----HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCEECC
T ss_conf 787358888896038997389799999867899-----899999999853315796556789999999873202440068
Q ss_pred --EEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHHHHHHHHCC-----CC--HHHHHHHH
Q ss_conf --1100233210123346542101468711211111244830334201303679999998524-----89--89999999
Q gi|254780168|r 252 --LILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGK-----KT--IPAAISAY 322 (380)
Q Consensus 252 --~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~-----~~--~~~~l~~Y 322 (380)
.+....+...|||.... .+.+.++|++|||||||+|||++|||.|+||+|+..|+++|.+ .| ....|++|
T Consensus 311 ~~~~~~~~~R~~fPL~~~~-A~~yv~~R~aLiGDAAHt~HPlAGQG~NLG~rDv~~La~~l~~a~~~g~DiG~~~~L~~Y 389 (445)
T TIGR01988 311 LGAITLVGERAAFPLSLRH-AKRYVAPRLALIGDAAHTVHPLAGQGLNLGLRDVAALAEVLVEARRRGEDIGSLAVLQRY 389 (445)
T ss_pred CEEEEECCCCCCCCCHHHH-HHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 2378876876304403343-587625985898054135787100100200789999999999988456685777789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHC
Q ss_conf 998679999999999998898367898-999999999851533377720
Q gi|254780168|r 323 QKVRAVRVKRIRYRTKLNQLLFHMHRP-ASLFRNAGLRLGIHKPLHKSL 370 (380)
Q Consensus 323 ~~~R~~~~~~i~~~s~~~~~~~~~~~~-~~~~r~~~l~~~~~~~~~~~l 370 (380)
++.|+.....+...+....++|+.+.| ++.+|+.+|++.+..|+.|++
T Consensus 390 ~r~R~~dn~~~~~~~D~L~~lF~n~~~pl~~lR~~GL~~~~~~pplK~~ 438 (445)
T TIGR01988 390 ERRRRFDNAAMLGATDGLNRLFSNDFPPLRLLRNLGLRLLNLLPPLKNF 438 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 9974998999999999999874068778999998999987404058999
No 12
>PRK07608 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=380.80 Aligned_cols=353 Identities=20% Similarity=0.254 Sum_probs=257.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCC------CCCEEEECHHHHHHHHHCCCHHHHHHCC-CCCCCEEEEEC
Q ss_conf 3877538999999999977985999956876555------7713667888999999889947898626-88430699978
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSD------SGFGIQISPNASRILKRIGILDQLEDIW-IEPEDFVFRSG 73 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~------~g~gi~l~p~~~~~L~~lGi~~~~~~~~-~~~~~~~~~~~ 73 (380)
+||||||+||++|+.|+++|++|+|||+++.... ..+.++|+|+++++|+++|+|+.+.... .+...+.++.
T Consensus 9 ~IvGaGp~Gl~lA~~La~~G~~v~viE~~~~~~~~~~~~~~~R~~al~~~s~~~L~~lGv~~~l~~~~~~p~~~~~~~~- 87 (389)
T PRK07608 9 AVVGGGLVGKSLALALAQSGLRVALLEAQPPAPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVYG- 87 (389)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHHCCCEEEEEEEEC-
T ss_conf 9999068999999999837998899958998766666676751789889999999987985455543264067899964-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCC------CCCCCCCCCCCEEEEEEEE
Q ss_conf 8544333455432344447824786200013478899732068725642101234------4321123453103568997
Q gi|254780168|r 74 STLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITH------PDCTQISKINNQKPDLLVG 147 (380)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~------~~~~~~~~~~~~~adlvIg 147 (380)
.....+ .++..+. ......+.+++..|...|.+.++..+++.+. +++++. ...++++++++++||||||
T Consensus 88 ~~~~~~-~~~~~~~---~~~~~~~ii~~~~l~~~L~~~~~~~~~i~~~-~~~~~~~~~~~~~v~v~~~~g~~i~a~llVg 162 (389)
T PRK07608 88 DAHGRL-HFSAYQA---AVPQLAWIVESSLIERALDAALRFQGNLTWF-DARAQGLDVTPDAATLTLSDGQVLEADLVVG 162 (389)
T ss_pred CCCCEE-ECCCCCC---CCCCEEEEEEHHHHHHHHHHHHHHCCCEEEE-CCEEEEEEECCCCEEEEECCCCEEEEEEEEE
T ss_conf 778546-3463335---8984144410799999999998618986998-8788899972991799988998999658999
Q ss_pred ECCCCCCCHHHCCCCCCCC-CCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCC
Q ss_conf 4367663121128533443-110157860365446554566760899765405788840489737999984577421112
Q gi|254780168|r 148 ADGLNSNIRHYIDTQPITF-SGDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDIS 226 (380)
Q Consensus 148 ADG~~S~vR~~l~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 226 (380)
|||++|.||+.++.+.... .++.++.+.+.... .+.+....|+.+++.++++|++++ .++++|..+.....+..
T Consensus 163 ADG~~S~vR~~~gi~~~~~~y~~~~~v~~~~~~~----~~~~~a~~~f~~~g~~a~lP~~~~-~~~~vw~~~~~~~~~~~ 237 (389)
T PRK07608 163 ADGAHSWVRSQAGIKVERRPYRQTGVVANFKAER----PHRETAYQWFRDGEILALLPLPDG-HVSMVWSARTAHADELL 237 (389)
T ss_pred ECCCCHHHHHHCCCCCCCCCCCCEEEEEEEEECC----CCCCEEEEEECCCCCEEEEECCCC-EEEEEEECCHHHHHHHH
T ss_conf 6699768887418887662103148999997237----764257999618972799876997-38999806803367775
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHHHH
Q ss_conf 34553222389898632128022201100233210123346542101468711211111244830334201303679999
Q gi|254780168|r 227 FLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYAL 306 (380)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~L 306 (380)
. ...+.+.+.+....+.....+........||+.... .+.|.++||+|+|||||+|+|++|||+|+||+||.+|
T Consensus 238 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-a~~~~~~rv~LiGDAAH~~~P~~GQG~N~gi~Da~~L 311 (389)
T PRK07608 238 A-----LSPAQLAAEVERAAGGRLGALRCVTPAAGFPLALQR-VDRLVAPRVALVGDAAHLIHPLAGQGMNLGLRDVAAL 311 (389)
T ss_pred C-----CCHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHH-HHHHHCCCEEEECCHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 0-----999999999998623445651564244344076552-5664126525651402057964033386889999999
Q ss_pred HHHHCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHC
Q ss_conf 9985248------989999999998679999999999998898367898-999999999851533377720
Q gi|254780168|r 307 SYLLGKK------TIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRP-ASLFRNAGLRLGIHKPLHKSL 370 (380)
Q Consensus 307 a~~L~~~------~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~~~-~~~~r~~~l~~~~~~~~~~~l 370 (380)
+++|... ....+|++|+++|++++..++..+..+.++|+..+| .+.+|+.+|+++++.|+.|++
T Consensus 312 a~~L~~~~~~~~~g~~~~L~~Ye~~R~~~~~~~~~~t~~l~~~f~~~~~~~~~~R~~~l~~~~~~~~lk~~ 382 (389)
T PRK07608 312 ADVLAGREPFRDLGDLRLLRRYERARREDILALMVATDGLQRLFGLPGALARWVRNAGMALVGAQPLVKRW 382 (389)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 99986263578855199999999999999999999999999998799679999999999998419999999
No 13
>PRK07236 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=387.21 Aligned_cols=331 Identities=20% Similarity=0.232 Sum_probs=240.1
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCC-CCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCC
Q ss_conf 3877538999999999977985999956876-555771366788899999988994789862688430699978854433
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQ-LSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKEL 79 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~-~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (380)
+||||||+||++|+.|+++|++|+||||++. .+..|+||.|+|+++++|+++|+. .....+.+.....+.+ .++..+
T Consensus 10 ~IVGaGiaGL~~A~~L~~~G~~v~v~Er~~~~~~~~G~gi~l~p~~~~~L~~~G~~-~~~~~~~~~~~~~~~~-~~g~~~ 87 (386)
T PRK07236 10 VVVGGSLGGLFAANLLRRAGWDVDVFERSPTELDGRGGGIVLQPELLRALAFAGVE-LPADIGVPSRERIYLD-RDGRVV 87 (386)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCHHHHHHHHHCCCC-CHHHCCCCCCCEEEEC-CCCCEE
T ss_conf 99993689999999998589998998689986788604997298899999976995-6475187656469994-899788
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC------CCCCCCCCCCEEEEEEEEECCCCC
Q ss_conf 34554323444478247862000134788997320687256421012344------321123453103568997436766
Q gi|254780168|r 80 SRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP------DCTQISKINNQKPDLLVGADGLNS 153 (380)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~------~~~~~~~~~~~~adlvIgADG~~S 153 (380)
...+ .+.....+..|.+.|.+.+.. ..++++++++.. ..+++.|++++++|+||||||++|
T Consensus 88 ~~~~----------~~~~~~~~~~l~~~l~~~l~~---~~i~~g~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S 154 (386)
T PRK07236 88 QRQP----------MPQTQTSWNVLYRALRAALPA---EHYHAGEALERVEQDGDRVTAHFADGREETADLLIGADGGRS 154 (386)
T ss_pred EEEC----------CCCCCHHHHHHHHHHHHHCCC---CEEEECCEEEEEEEECCEEEEEECCCCEEEEEEEEECCCCCC
T ss_conf 7614----------873011499999999976899---889959999999982997999987998877628996588775
Q ss_pred CCHHHCCC-CCCCCCCCEEEEEECCCCCCCCCC---CCCCEEEEECCCCEEEEEEECCC--------CEEEEEEEECCCC
Q ss_conf 31211285-334431101578603654465545---66760899765405788840489--------7379999845774
Q gi|254780168|r 154 NIRHYIDT-QPITFSGDVVLRCLIPQNNAPEFI---DFQSVNIFFGPDSHLVTYPLRED--------NTINMVFVSSKHT 221 (380)
Q Consensus 154 ~vR~~l~~-~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~--------~~~~~~~~~~~~~ 221 (380)
+||+++.. ..+.|+|+++|+++++....+... ..+.+.+|.+++.+++.||+++. ..++|+|+.+...
T Consensus 155 ~vR~~l~~~~~~~~~g~~~~rg~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~g~~~~~~vw~~~~~~ 234 (386)
T PRK07236 155 AVRAQLLPDVRPTYAGYVAWRGLVDEAALPDEARAALRDRFAFQQGPGELILGYLVPGEDGSTEPGQRRYNWVWYRPASA 234 (386)
T ss_pred CHHHHHCCCCCCCCCCEEEEEEEEEHHHCCHHHHHHHCCCEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEEEECCCC
T ss_conf 15887478999745465899999536868867777523742799679965999982378886344540688999822683
Q ss_pred CCCCCC------------CCCC----CCCHHHHHHHHHHC-CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHH
Q ss_conf 211123------------4553----22238989863212-802220110023321012334654210146871121111
Q gi|254780168|r 222 LKDISF------------LKRS----EIHKEWFVKHLTNW-HQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDA 284 (380)
Q Consensus 222 ~~~~~~------------~~~~----~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDA 284 (380)
...... ...+ +...+.+.+....+ .|.+.+++........+++++... ++|.+|||+|+|||
T Consensus 235 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~gRv~LiGDA 313 (386)
T PRK07236 235 GEELPELLTDRDGTRRPGSLPPGALRDEVLAELRDAAARLLAPTFAELVDATAQPFVQAIFDLEV-PRMAFGRVALLGDA 313 (386)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEEEECCC-CCCCCCCEEEEEHH
T ss_conf 35555654124565011457844257889999999987542789999986387511634131026-53456888999765
Q ss_pred CCCCCCCHHHHHCCCHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 1244830334201303679999998524--89899999999986799999999999988983678
Q gi|254780168|r 285 AHTLLPFAAQGANMAIEDAYALSYLLGK--KTIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMH 347 (380)
Q Consensus 285 AH~~~P~~GqG~n~al~Da~~La~~L~~--~~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~ 347 (380)
||+|+|+.|||+|+|||||++|+++|.+ .+++++|+.||++|+||+++++..||.+++.++..
T Consensus 314 AH~m~P~~GQGan~AieDA~~La~~L~~~~~~~~~al~~Ye~~R~pr~~~v~~~sr~~g~~~~~~ 378 (386)
T PRK07236 314 AFVARPHTAMGVAKAAGDAVALAEALAAAADDIDAALAAWEAERLAVGAAIVARGRDLGARLMAQ 378 (386)
T ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 17579851036899999999999999867877999999999999999999999999999998503
No 14
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=0 Score=379.99 Aligned_cols=355 Identities=21% Similarity=0.237 Sum_probs=261.8
Q ss_pred CEECCHHHHHHHHHHHHHCC---CEEEEEECCCCC-----CCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEE
Q ss_conf 38775389999999999779---859999568765-----5577136678889999998899478986268843069997
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRG---IQSCVLEKKDQL-----SDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRS 72 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G---~~v~i~Er~~~~-----~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~ 72 (380)
+||||||+|+++|+.|++.| ++|+|+|+.... ...+++++|+|+++++|+++|+|+.+...+.+...+.+.+
T Consensus 7 ~IvGaGp~Gl~lAl~L~~~g~~~~~v~viE~~~~~~~~~~~~d~Ra~al~~~s~~~L~~lGl~~~l~~~~~pi~~i~v~d 86 (395)
T PRK05732 7 IIVGGGMAGATLALALSRLSHGRLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPIRHIHVSD 86 (395)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCEEEEEEE
T ss_conf 99993899999999999618899749999378854456888774478888999999998799288786276542899840
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC----C--CCCCCCCCCEEEEEEE
Q ss_conf 885443334554323444478247862000134788997320687256421012344----3--2112345310356899
Q gi|254780168|r 73 GSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP----D--CTQISKINNQKPDLLV 146 (380)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~----~--~~~~~~~~~~~adlvI 146 (380)
... .....++..+...+.. .+.+++.+|.+.|.+.+.+.++++++++++++.. + .+.++++++.++||||
T Consensus 87 ~~~-~~~~~~~~~~~~~~~l---g~~v~~~~l~~~L~~~l~~~~~v~~~~~~~v~~i~~~~~~v~v~l~~g~~i~a~lvV 162 (395)
T PRK05732 87 RGH-AGFVRLDAEDYGVDAL---GYVVELADVGQRLFALLDKAPGVTLHCPARVANVERTQDGVRVTLDDGETLTARLLV 162 (395)
T ss_pred CCC-CCCEECCHHHCCCCCC---CCEEEHHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCCEEEEECCCCEEEECEEE
T ss_conf 686-7721056332387656---543236999999999884089969976988999998289279998799899837999
Q ss_pred EECCCCCCCHHHCCCCCCC-CCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCC
Q ss_conf 7436766312112853344-311015786036544655456676089976540578884048973799998457742111
Q gi|254780168|r 147 GADGLNSNIRHYIDTQPIT-FSGDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDI 225 (380)
Q Consensus 147 gADG~~S~vR~~l~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 225 (380)
||||++|.||++++.+... ...+.++.+.+..... +......+|.++++++++|++++ ..+++|..+++.....
T Consensus 163 gADG~~S~vR~~lgi~~~~~~y~~~~lv~~v~~~~~----~~~~a~~~f~~~Gp~allP~~~~-~~~~vw~~~~~~~~~~ 237 (395)
T PRK05732 163 AADGTHSALREQLGIDWQQHPYEQVAVIANVTTSEA----HQGRAFERFTEHGPLALLPMSDG-RCSLVWCHPLEDAEEV 237 (395)
T ss_pred EECCCCHHHHHHCCCCCCCCCCCEEEEEEECCCCCC----CCCCEEEEECCCCCEEEEECCCC-EEEEEEECCHHHHHHH
T ss_conf 928996254453146765665750799984024567----66631788759998798766899-7999994373437777
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHHH
Q ss_conf 23455322238989863212802220110023321012334654210146871121111124483033420130367999
Q gi|254780168|r 226 SFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYA 305 (380)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~ 305 (380)
.... .+.+.+.+....+.....+........||+..+ ..+.|.++||+|+|||||+|||++|||+|+||+||.+
T Consensus 238 ~~~~-----~~~~~~~l~~~~~~~~g~~~~~~~~~~~pl~~~-~a~~~~~~Rv~LiGDAAH~~~P~aGQG~Nlgi~Da~~ 311 (395)
T PRK05732 238 LSWS-----DAQFLAELQSAFGWRLGRITQAGKRSAYPLALV-TAAEQISHRLVLVGNAAQTLHPIAGQGFNLGLRDVMS 311 (395)
T ss_pred HCCC-----HHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHH-HHHHHHCCCEEEECCHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 4399-----899999999974534564378523224617777-6888741780675054426896305505268999999
Q ss_pred HHHHHCC-----CC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHC
Q ss_conf 9998524-----89--89999999998679999999999998898367898-999999999851533377720
Q gi|254780168|r 306 LSYLLGK-----KT--IPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRP-ASLFRNAGLRLGIHKPLHKSL 370 (380)
Q Consensus 306 La~~L~~-----~~--~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~~~-~~~~r~~~l~~~~~~~~~~~l 370 (380)
|+++|.. .+ ....|+.|+++|++.+..++..+....++|..++| .+.+|+.+|+.+++.|..|++
T Consensus 312 L~~~La~~~~~~~~~g~~~~L~~Y~~~R~~~~~~~~~~td~l~~lf~~~~~~~~~~R~~gl~~~~~~~~lk~~ 384 (395)
T PRK05732 312 LAETLTAAHERGEDIGDYAVLQRYQQRRQQDREATIGFTDGLVRLFANRWPPLVVGRNLGLMAMDLLPPARDW 384 (395)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 9999999874499977399999999998999999999999999998699679999999999998528899999
No 15
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=0 Score=378.88 Aligned_cols=355 Identities=22% Similarity=0.273 Sum_probs=260.2
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC--CCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655--577136678889999998899478986268843069997885443
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS--DSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKE 78 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~--~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~ 78 (380)
+||||||+|+++|+.|+++|++|+|+|+++... ..++++.|+|+++++|+++|+|+.+...+.+...+.+.+.... .
T Consensus 21 ~IVGaGp~Gl~lAl~La~~Gi~v~viE~~~~~~~~~~~ra~~l~~~s~~iL~~lGl~~~i~~~~~~~~~i~~~~~~~~-~ 99 (413)
T PRK07364 21 VIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAVAKGQAYALSLLSARIFEGIGVWEKILPHIGPFRQIQLSDADFP-G 99 (413)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHHCCCCCEEEEEECCCC-C
T ss_conf 999927999999999986899889991799766678873899589999999987996898861475425999818987-4
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC----CCCC--CCCC---CCEEEEEEEEEC
Q ss_conf 334554323444478247862000134788997320687256421012344----3211--2345---310356899743
Q gi|254780168|r 79 LSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP----DCTQ--ISKI---NNQKPDLLVGAD 149 (380)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~----~~~~--~~~~---~~~~adlvIgAD 149 (380)
...+...+... ....+.+.+..+.+.|.+.+...+++++.++++++.. +.+. +..+ .+++++||||||
T Consensus 100 ~~~~~~~~~~~---~~lg~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~~~~~~~i~a~llIgaD 176 (413)
T PRK07364 100 VVRFSPEDLGT---EALGYVGEHQVLLEALQEFVQSCPNITWLCPAQVLSVEYGEHQATVTLEIAGQLQTLQSKLVVAAD 176 (413)
T ss_pred EEEECHHHCCC---CCCEEEHHHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCEEEEEEECCCCEEEEEEEEEEEEC
T ss_conf 67516554388---754233002999999999998489948982877999997698369999829913899856899931
Q ss_pred CCCCCCHHHCCCCCCCCC-CCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 676631211285334431-1015786036544655456676089976540578884048973799998457742111234
Q gi|254780168|r 150 GLNSNIRHYIDTQPITFS-GDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFL 228 (380)
Q Consensus 150 G~~S~vR~~l~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 228 (380)
|++|.||++++.....+. .+.++.+.+.... ...+....++.+.++++++|++++ ...++|..+........
T Consensus 177 G~~S~VR~~lgi~~~g~~y~q~~~~~~v~~~~----~~~~~~~~~f~~~g~~a~lPl~~~-~~~ivw~~~~~~~~~~~-- 249 (413)
T PRK07364 177 GARSPIRQAAGIKTDGWKYWQSCVTATVKPEA----PHNDVAYERFWPSGPFAILPLPGN-RCQIVWTAPHAQAKALL-- 249 (413)
T ss_pred CCCCHHHHHHCCCCCCCCCCEEEEEEEECCCC----CCCCEEEEEECCCCCEEEEECCCC-EEEEEEECCCHHHHHHH--
T ss_conf 88850035406876568866069998631457----765314898608997699876998-07999976714257675--
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHHHHHH
Q ss_conf 55322238989863212802220110023321012334654210146871121111124483033420130367999999
Q gi|254780168|r 229 KRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSY 308 (380)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~ 308 (380)
+...+.+.+.+.....+....+..+.+...||+..+ ..+.|.++||+|+|||||+|||++|||+|+||+||..|++
T Consensus 250 ---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~-~a~~~~~~Rv~LiGDAAH~~~P~~GQG~Nlgi~Da~~La~ 325 (413)
T PRK07364 250 ---ALPEAEFLAELQQRTGDQLGKLELLGDRFVFPVQLM-QSDRYVQHRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQ 325 (413)
T ss_pred ---CCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHH-HHHHHHCCCCEEEHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf ---099899999999874654541589415420408775-3577634772353204432897304613157999999999
Q ss_pred HHCC-----CC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHC
Q ss_conf 8524-----89--89999999998679999999999998898367898-999999999851533377720
Q gi|254780168|r 309 LLGK-----KT--IPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRP-ASLFRNAGLRLGIHKPLHKSL 370 (380)
Q Consensus 309 ~L~~-----~~--~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~~~-~~~~r~~~l~~~~~~~~~~~l 370 (380)
+|.+ .+ ....|++|+++|++....++..+....++|..++| .+.+|+.+|++++..|..|++
T Consensus 326 ~L~~a~~~~~d~g~~~~L~~Y~~~R~~~~~~~~~~t~~l~~lf~~~~~~~~~~R~~gl~~~~~~~~lk~~ 395 (413)
T PRK07364 326 VLLEAHQRGEDIGSLAVLKRYERWRKRENWLILGFTDLLDRLFSNHWWPLVVVRRLGLWLLRHVPPLKRL 395 (413)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 9999986399976699999999998899999999999999998699659999999999998648899999
No 16
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=0 Score=378.40 Aligned_cols=353 Identities=30% Similarity=0.420 Sum_probs=262.4
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECC-CCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCC
Q ss_conf 38775389999999999779859999568-76555771366788899999988994789862688430699978854433
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKK-DQLSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKEL 79 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~-~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (380)
+||||||+||++|+.|+++|++|+|+||+ +.+.+.|+++.|+|+++++|+++|+++.+...+.++......+.... ..
T Consensus 6 ~IvGaG~aGl~lA~~L~~~G~~V~liE~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~~-~~ 84 (387)
T COG0654 6 AIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGGR-RL 84 (387)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHCCCCCEEEEEEECCCC-EE
T ss_conf 99997899999999998289968999077611355755999898999999984990777615788603799965996-38
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCCC------CCCCC-CCCCEEEEEEEEECCCC
Q ss_conf 345543234444782478620001347889973206872564210123443------21123-45310356899743676
Q gi|254780168|r 80 SRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHPD------CTQIS-KINNQKPDLLVGADGLN 152 (380)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~~------~~~~~-~~~~~~adlvIgADG~~ 152 (380)
..++...... +.+.++++|.+|.+.|.+++.+.+++++.++++|+..+ .+.++ ++++++|||||||||+|
T Consensus 85 ~~~~~~~~~~---~~~~~~~~~~~l~~~L~~~~~~~~~v~l~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~ 161 (387)
T COG0654 85 LIFDAAELGR---GALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGAN 161 (387)
T ss_pred EEECHHHCCC---CCCEEEEEHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCEEEEEEECCCEEEECCEEEECCCCC
T ss_conf 9815221687---7627998889999999999871898299957779998853973799990399199759999889987
Q ss_pred CCCHHHCCCCC-CC-CCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCC
Q ss_conf 63121128533-44-31101578603654465545667608997654057888404897379999845774211123455
Q gi|254780168|r 153 SNIRHYIDTQP-IT-FSGDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKR 230 (380)
Q Consensus 153 S~vR~~l~~~~-~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (380)
|.||+.++... .. ...+.++...+... ..+......++.+.+++.++|+.+ .....+|..+...........
T Consensus 162 S~vR~~~~~~~~~~~~y~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~- 235 (387)
T COG0654 162 SAVRRAAGIAEFSGRDYGQTALVANVEPE----EPHEGRAGERFTHAGPFALLPLPD-NRSSVVWSLPPGPAEDLQGLS- 235 (387)
T ss_pred HHHHHHCCCCCCCCCCCCEEEEEEEECCC----CCCCCCEEEEECCCCCEEEEECCC-CCEEEEEECCCCHHHHHCCCC-
T ss_conf 69997469876557755506999970377----888871689923897679987488-966899991386145402378-
Q ss_pred CCCCHHHHHHHHHHCCCCC--CEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHHHHHH
Q ss_conf 3222389898632128022--20110023321012334654210146871121111124483033420130367999999
Q gi|254780168|r 231 SEIHKEWFVKHLTNWHQEI--IQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSY 308 (380)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~ 308 (380)
.+.+...+....+.. ...+........||+......++ .++||+|+|||||+|+|++|||+|+||+||..|++
T Consensus 236 ----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pl~~~~a~~~-~~~Rv~LiGDAAH~~~P~~gQG~nlg~~Da~~La~ 310 (387)
T COG0654 236 ----DEEFLRELQRRLGERDPLGRVTLVSSRSAFPLSLRVAERY-RRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAE 310 (387)
T ss_pred ----HHHHHHHHHHHCCCCCCCCEEEECCCCEECCCCCCEECCE-ECCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf ----6889999998649743356045535320122124120113-64888999556676898610457677989999999
Q ss_pred HHCCCC---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHH
Q ss_conf 852489---8-9999999998679999999999998898367898-9999999998515333777
Q gi|254780168|r 309 LLGKKT---I-PAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRP-ASLFRNAGLRLGIHKPLHK 368 (380)
Q Consensus 309 ~L~~~~---~-~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~~~-~~~~r~~~l~~~~~~~~~~ 368 (380)
+|.... . +++|+.|+++|++++..++..|..+...++...+ .+.+|+..++.....+..+
T Consensus 311 ~L~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~ 375 (387)
T COG0654 311 ALAAAPRPGADAAALAAYEARRRPRAEAIQKLSRALGRLFSADGPFARFLRNLGLRLLDRLPPLR 375 (387)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf 99975416851899999999978899999999999886434476177787888987402150147
No 17
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=0 Score=377.67 Aligned_cols=357 Identities=20% Similarity=0.260 Sum_probs=261.4
Q ss_pred CEECCHHHHHHHHHHHHHCC--CEEEEEECCCCC--CCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 38775389999999999779--859999568765--55771366788899999988994789862688430699978854
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRG--IQSCVLEKKDQL--SDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTL 76 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G--~~v~i~Er~~~~--~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~ 76 (380)
+||||||+|+++|+.|+++| ++|+++|+.+.. ...+++++|+|+++++|+++|+|+++...+.+...+.+.+....
T Consensus 5 ~IVGaGpvGl~lAl~L~~~G~~~~v~vie~~~~~~~~~d~Ra~al~~~s~~~L~~lGv~~~l~~~~~~i~~~~v~d~~~~ 84 (403)
T PRK07333 5 VIAGGGYVGLALAVALKQAAPHLPVIVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWQEIAPEAQPITDMVITDSRTS 84 (403)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCEEEEEEECCCC
T ss_conf 99994699999999998469996699982886668788876888679999999987987887751610027999846557
Q ss_pred CCCCC--CCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC----C--CCCCCCCCCEEEEEEEEE
Q ss_conf 43334--554323444478247862000134788997320687256421012344----3--211234531035689974
Q gi|254780168|r 77 KELSR--FSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP----D--CTQISKINNQKPDLLVGA 148 (380)
Q Consensus 77 ~~~~~--~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~----~--~~~~~~~~~~~adlvIgA 148 (380)
..... +.+...... .....+.+++..|.+.|.+.++.. ++++++++++++. + .+++.++++.+|+|||||
T Consensus 85 ~~~~~~~l~f~~~~~~-~~~~~~~v~~~~l~~~L~~~~~~~-~v~~~~~~~v~~i~~~~~~v~v~l~~g~~i~a~llIga 162 (403)
T PRK07333 85 DPVRPVFLTFEGEVEP-GEPFAHMVENRVLINALRKRAEAL-GIDLREATSVTDFETRDEGVTVTLADGSTLEARLLVAA 162 (403)
T ss_pred CCCCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHHHHHHHC-CCEEECCCEEEEEEECCCEEEEEECCCCEEEEEEEEEC
T ss_conf 7666420024643456-887368745899999999999828-99898588578999749807999789989998699983
Q ss_pred CCCCCCCHHHCCCCCCCC-CCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCC
Q ss_conf 367663121128533443-1101578603654465545667608997654057888404897379999845774211123
Q gi|254780168|r 149 DGLNSNIRHYIDTQPITF-SGDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISF 227 (380)
Q Consensus 149 DG~~S~vR~~l~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 227 (380)
||++|.||++++.+.... .++.++.+.+..+.. +......+|.|.++++++|+.++ ..+++|..+.........
T Consensus 163 DG~~S~VR~~lgi~~~~~~y~q~~iv~~v~~~~~----~~~~a~~~f~~~Gp~a~lPl~~~-~~s~vw~~~~~~~~~~~~ 237 (403)
T PRK07333 163 DGARSKLRELAGIKTVGWDYGQSGIVCTVEHERP----HGGRAEEHFLPAGPFAILPLKGN-RSSLVWTERTADAERLVA 237 (403)
T ss_pred CCCCHHHHHHCCCCCCCCCCCCEEEEEEECCCCC----CCCEEEEEEECCCCEEEEECCCC-CEEEEEECCHHHHHHHHC
T ss_conf 4876132552398765877774289973034577----75205899808986699646998-335588057777887652
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHHHHH
Q ss_conf 45532223898986321280222011002332101233465421014687112111112448303342013036799999
Q gi|254780168|r 228 LKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALS 307 (380)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La 307 (380)
.. .+.+.+.+....+.....+........||+.. ...+.|.++||+|+|||||+|||++|||+|+||+||.+|+
T Consensus 238 ~~-----~~~~~~~l~~~~~~~~g~~~~~~~~~~~~l~~-~~a~~~~~~rv~L~GDAAH~~~P~aGQGlNlgl~Da~~La 311 (403)
T PRK07333 238 LD-----DLVFEAELEQRFGHRLGELKVLGKRRAFPLGL-TLARSFIAPRFALVGDAAHVIHPIAGQGLNLGLKDVAALA 311 (403)
T ss_pred CC-----HHHHHHHHHHHHCCCCCCEEECCCCEEEEHHH-HHHHHHHCCCEEEEHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 89-----89999999998552355506714626641777-8888863377267511364279852660414689999999
Q ss_pred HHHCC-----C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHC
Q ss_conf 98524-----8--989999999998679999999999998898367898-999999999851533377720
Q gi|254780168|r 308 YLLGK-----K--TIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRP-ASLFRNAGLRLGIHKPLHKSL 370 (380)
Q Consensus 308 ~~L~~-----~--~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~~~-~~~~r~~~l~~~~~~~~~~~l 370 (380)
++|.+ . +....|+.|+++|++....+...+....++|+.++| .+.+|+.+|..+++.|+.|++
T Consensus 312 ~~L~~~~~~g~d~g~~~~L~~Y~~~R~~~~~~~~~~~d~l~~lf~~~~~~~~~~R~~gl~~~~~~~~lK~~ 382 (403)
T PRK07333 312 EVVVEAARLGLDIGSLDVLERYQRWRRFDTVAMGVTTDVLNKLFSNDSTLLRSVRDIGLGLVDRLPPLKSF 382 (403)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 99999986199965299999999998999999999999999998799679999999999998529999999
No 18
>PRK05868 hypothetical protein; Validated
Probab=100.00 E-value=0 Score=379.37 Aligned_cols=332 Identities=19% Similarity=0.253 Sum_probs=236.5
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 38775389999999999779859999568765557713667888999999889947898626884306999788544333
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELS 80 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
|||||||+||++|+.|+|+|++|+|+||++.+++.|++|.|+|+++++|++||++|.+.+.+.+...+.+++.+ +..+.
T Consensus 5 lIvGaGiAGlalA~~L~r~G~~VtV~Er~p~~r~~G~~i~l~~~a~~vL~~mGl~d~~~~~~~~~~~~~~~d~~-G~~l~ 83 (372)
T PRK05868 5 LVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQERKTRIRGASVVDRD-GNELS 83 (372)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHHCCCCCCEEEEECC-CCEEE
T ss_conf 99898889999999998589988999579998889966746869999999878978998615786423999489-98987
Q ss_pred CCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC------CCCCCCCCCCEEEEEEEEECCCCCC
Q ss_conf 4554323444478247862000134788997320687256421012344------3211234531035689974367663
Q gi|254780168|r 81 RFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP------DCTQISKINNQKPDLLVGADGLNSN 154 (380)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~------~~~~~~~~~~~~adlvIgADG~~S~ 154 (380)
..............+...|.|.+|.++|.+..+ +.+.+.++++++.. ..++++++++.++|+||||||+||+
T Consensus 84 ~~~~~~~~g~~~~~~~~~i~R~dL~~~L~~a~~--~~v~~~~g~~v~~i~~~~~~V~V~f~dg~~~~~DlVIGADGi~S~ 161 (372)
T PRK05868 84 RDTESTPTGGPINSPDIELLRDDLVELLYGATQ--PTVEYLFDDSISTLQDDGAAVRVTFERAAAREFDLVIGADGLHSN 161 (372)
T ss_pred ECCCCCCCCCCCCCCEEEHHHHHHHHHHHHHCC--CCEEEEECCEEEEEEECCCEEEEEEECCCEEEEEEEEECCCCCHH
T ss_conf 526666556756884000319999999986345--880999578889999649979999907985786589974787417
Q ss_pred CHHHCCCCCCCCC-CCEEEEEECCCCCCCCCCCCCCEEEE-ECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 1211285334431-10157860365446554566760899-765405788840489737999984577421112345532
Q gi|254780168|r 155 IRHYIDTQPITFS-GDVVLRCLIPQNNAPEFIDFQSVNIF-FGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKRSE 232 (380)
Q Consensus 155 vR~~l~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (380)
||+.+......+. ....+.+.+.. |.....+....| .+++....+||..++......+...+.... .. ....+
T Consensus 162 VR~~~fgp~~~~~~~lg~~~a~~~~---p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~ 236 (372)
T PRK05868 162 VRRLVFGPEEQFIKRLGTHAAIFTV---PNFLELDYWQTWHYGDSTMAGVYSARDNTEARAALGFMDTELR-ID-YRDTE 236 (372)
T ss_pred HHHHHCCCCCCCCCEEEEEEEEEEC---CCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEECCCCCC-CC-CCCCH
T ss_conf 7887528854420112479999966---8866776247898569828999977899757999994275335-66-55623
Q ss_pred CCHHHHHHHHHHC---CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHHHHHHH
Q ss_conf 2238989863212---8022201100233210123346542101468711211111244830334201303679999998
Q gi|254780168|r 233 IHKEWFVKHLTNW---HQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYL 309 (380)
Q Consensus 233 ~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~ 309 (380)
...+.+.+.+.+. .+.+.+.+...++.+..++.+. ..+.|++|||+|+|||||+|+|++|||+|+||+||++||++
T Consensus 237 ~~~~~l~~~~~~~gw~~~~ll~~~~~~~d~~~~~~~q~-~~~~W~~GRVvLlGDAAH~~sP~~GQGa~~Ai~dA~vLA~e 315 (372)
T PRK05868 237 AQFAELERRMAEDGWVRAQLLHYMRSAPDFYFDEMSQI-LMDRWSRGRVALVGDAGYCCSPLSGQGTSVALLGAYILAGE 315 (372)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEECCCCEE-ECCCCCCCCEEEEECCHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 35899998742058763789876224763574132021-47875759899865122018767779999999999999999
Q ss_pred HCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 524--89899999999986799999999999988
Q gi|254780168|r 310 LGK--KTIPAAISAYQKVRAVRVKRIRYRTKLNQ 341 (380)
Q Consensus 310 L~~--~~~~~~l~~Y~~~R~~~~~~i~~~s~~~~ 341 (380)
|.+ ++++.+|+.||++++|++++.|+....+.
T Consensus 316 L~~~~~d~~~A~~~Ye~~~rp~v~~~q~l~~~~~ 349 (372)
T PRK05868 316 LKAAGDDYQLGFANYHAEFHGFVERNQWLVSDNI 349 (372)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9877999999999999986189998777640687
No 19
>PRK08948 consensus
Probab=100.00 E-value=0 Score=377.64 Aligned_cols=355 Identities=20% Similarity=0.233 Sum_probs=266.2
Q ss_pred CEECCHHHHHHHHHHHHH---CCCEEEEEECCCCCC-----CCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEE
Q ss_conf 387753899999999997---798599995687655-----577136678889999998899478986268843069997
Q gi|254780168|r 1 MIIGAGISGLTLAASLGH---RGIQSCVLEKKDQLS-----DSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRS 72 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~---~G~~v~i~Er~~~~~-----~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~ 72 (380)
+||||||+|+++|++|++ .|++|+|+|+.+... ..+++++|+++++++|+++|+|+.+.+.+.+...+.+.+
T Consensus 4 ~IvGaG~vGl~lAlaL~~l~~~~l~v~lie~~~~~~~~~p~~d~Ra~al~~~s~~~L~~lGvw~~l~~~~~pi~~i~v~d 83 (392)
T PRK08948 4 IIVGGGMAGATLALAISRLSHGALPVALIEATAPESDAHPGFDARAIALAAGTCQQLARIGVWSALADCATAITHVHVSD 83 (392)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCCHHHHHHCCCCCEEEEEE
T ss_conf 99995899999999998616799849998278875445788884345756999999998799477785066300789840
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC----C--CCCCCCCCCEEEEEEE
Q ss_conf 885443334554323444478247862000134788997320687256421012344----3--2112345310356899
Q gi|254780168|r 73 GSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP----D--CTQISKINNQKPDLLV 146 (380)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~----~--~~~~~~~~~~~adlvI 146 (380)
... .....++..+...+.. .+.+++..+.+.|.+.+++.+++++.++++++.. + .+.++++++.+++|||
T Consensus 84 ~~~-~~~~~~~~~~~~~~~l---g~iv~~~~l~~~L~~~l~~~~~v~~~~~~~v~~i~~~~~~v~v~l~~g~~~~a~llV 159 (392)
T PRK08948 84 RGH-AGFVTLAAEDYGVAAL---GYVVELHDVGQRLFALLRKAPGVTLHCPARVANVARTQESVTVTLDNGETLQGKLLV 159 (392)
T ss_pred CCC-CCEEECCHHHCCCCCC---HHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEEEEECCCCEEEEECCCCEEEECEEE
T ss_conf 787-7625437666088531---127879999999999997589987855876899885588279997899899837899
Q ss_pred EECCCCCCCHHHCCCCCCC-CCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCC
Q ss_conf 7436766312112853344-311015786036544655456676089976540578884048973799998457742111
Q gi|254780168|r 147 GADGLNSNIRHYIDTQPIT-FSGDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDI 225 (380)
Q Consensus 147 gADG~~S~vR~~l~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 225 (380)
||||++|.||+.++++... ..++.++.+.+.... .+.+....+|.++++++++|++++ .++++|+.+++...+.
T Consensus 160 gaDG~~S~vR~~~gi~~~~~~y~q~alv~~v~~~~----~~~~~a~q~F~~~Gp~allPl~~~-~~s~Vw~~~~~~~~~~ 234 (392)
T PRK08948 160 AADGSHSALAQACGIDWQQHDYEQVAVIANVTTSE----PHQGRAFERFTEHGPLALLPMSDG-RSSLVWCHPLERREEV 234 (392)
T ss_pred EECCCCHHHHHHCCCCCCCCCCCCEEEEECCCCCC----CCCCEEEEEECCCCCEEEEECCCC-EEEEEEECCHHHHHHH
T ss_conf 91899737777430676256676369994133467----876479998569997699877999-6999996788889988
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHHH
Q ss_conf 23455322238989863212802220110023321012334654210146871121111124483033420130367999
Q gi|254780168|r 226 SFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYA 305 (380)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~ 305 (380)
... ..+.+.+.+....+.....+........||+..+. ...|.++||+|+|||||+|||++|||+|+||+||..
T Consensus 235 ~~~-----~~~~~~~~l~~~~~~~lg~~~~~~~~~~~pl~~~~-a~~~~~~Rv~LiGDAAH~ihP~aGQGlNlGl~Da~~ 308 (392)
T PRK08948 235 LSW-----SDERFLAELQQAFGWRLGKITHAGKRSAYPLALRT-AAQHISHRLALVGNAAQTLHPIAGQGFNLGLRDVMS 308 (392)
T ss_pred HCC-----CHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHH-HHHHHCCCEEEEHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 649-----99999999999844402444770341247267767-898741673673204532797304612157899999
Q ss_pred HHHHHCC-----C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHCCCHHHHHC
Q ss_conf 9998524-----8--98999999999867999999999999889836789-8999999999851533377720
Q gi|254780168|r 306 LSYLLGK-----K--TIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHR-PASLFRNAGLRLGIHKPLHKSL 370 (380)
Q Consensus 306 La~~L~~-----~--~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~~-~~~~~r~~~l~~~~~~~~~~~l 370 (380)
|+++|.+ . ....+|++|+++|++....++..+....++|..+. |.+.+|+.+|+++++.|+.|++
T Consensus 309 La~~L~~~~~~g~d~g~~~~L~~Y~~~R~~~~~~~~~~td~l~~lf~~~~~~~~~~R~~gl~~~~~~~~lK~~ 381 (392)
T PRK08948 309 LAETLTQAQERGEDIGDYAVLSRYQQRRQSDRQATIGVTDGLVHLFANRWAPLVVGRNLGLMAMELFPPARDP 381 (392)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 9999999985499977199999999999999999999999999998699768999999999998518999999
No 20
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=100.00 E-value=0 Score=372.79 Aligned_cols=353 Identities=20% Similarity=0.258 Sum_probs=262.6
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC------CCCCEEEECHHHHHHHHHCCCHHHHHHC-CCCCCCEEEEEC
Q ss_conf 387753899999999997798599995687655------5771366788899999988994789862-688430699978
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS------DSGFGIQISPNASRILKRIGILDQLEDI-WIEPEDFVFRSG 73 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~------~~g~gi~l~p~~~~~L~~lGi~~~~~~~-~~~~~~~~~~~~ 73 (380)
+||||||+|+++|+.|+++|++|+|+|+++.+. ...+..+|++.++++|+++|+|+++.+. ..+...+..++.
T Consensus 9 ~IvG~G~vGl~lAl~La~~G~~V~viE~~~~~~~~~~~~~d~R~~al~~~s~~~L~~lGvw~~~~~~~~~~~~~~~~~~~ 88 (391)
T PRK08020 9 AIVGGGMVGGALALGLAQHGFSVAVIEHAAPAPFVADSQPDVRISAISAASVALLKGLGVWDAVQAMRCHPYRRLETWEW 88 (391)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCEEEEEEECC
T ss_conf 99993699999999998669978999489987666557987338987889999999888848778625687148986127
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC----C--CCCCCCCCCEEEEEEEE
Q ss_conf 85443334554323444478247862000134788997320687256421012344----3--21123453103568997
Q gi|254780168|r 74 STLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP----D--CTQISKINNQKPDLLVG 147 (380)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~----~--~~~~~~~~~~~adlvIg 147 (380)
.... ..++..+..... ..+.|++..|.+.|.++++..+++++.++++++.. + .++++++++++||||||
T Consensus 89 ~~~~--~~f~~~~~~~~~---lg~~v~~~~l~~~L~~~l~~~~~v~~~~~~~v~~i~~~~~~~~v~l~~g~~i~a~lvIg 163 (391)
T PRK08020 89 ETAH--VVFDAAELKLPE---LGYMVENRVLQQALWQALEAHPNVTLRVPASLIALHRHDDGWELELADGETIQAKLVIG 163 (391)
T ss_pred CCCE--EEECHHHCCCCC---CCCCCCHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCEEEEEECCCCEEEECEEEE
T ss_conf 8855--872544328975---40121269999999999983899699958802688974986899948999998379999
Q ss_pred ECCCCCCCHHHCCCCCCCC-CCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCC
Q ss_conf 4367663121128533443-110157860365446554566760899765405788840489737999984577421112
Q gi|254780168|r 148 ADGLNSNIRHYIDTQPITF-SGDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDIS 226 (380)
Q Consensus 148 ADG~~S~vR~~l~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 226 (380)
|||++|.||+.+++....+ +++.++.+.+..... +.+....+|.++++++++|+.+ +..+++|+.++.......
T Consensus 164 ADG~~S~vR~~~gi~~~~~~y~q~alv~~v~~~~~----~~~~a~q~f~~~Gp~alLPl~~-~~~slVw~~~~~~~~~l~ 238 (391)
T PRK08020 164 ADGANSQVRQMAGIGVHAWQYAQSCMLITVECEND----PGDSTWQQFTPDGPRAFLPLFD-NWASLVWYDSPARIRQLQ 238 (391)
T ss_pred ECCCCCHHHHHCCCCCCCCCCCCEEEEEEECCCCC----CCCCEEEEECCCCCEEEEECCC-CEEEEEEECCHHHHHHHH
T ss_conf 07997054452278863578762489998614677----7763289980899778862589-868999947877788765
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHHHH
Q ss_conf 34553222389898632128022201100233210123346542101468711211111244830334201303679999
Q gi|254780168|r 227 FLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYAL 306 (380)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~L 306 (380)
. ...+.+.+.+....+.....+..... ..||+.... ...|..+||+|+|||||+|||++|||+|+||+||.+|
T Consensus 239 ~-----~~~~~~~~~l~~~~~~~lg~i~~~~~-~~fpl~~~~-a~~~~~~rvvLiGDAAH~ihP~aGQGlNlGl~Da~~L 311 (391)
T PRK08020 239 A-----MSMAQLQAEIAAHFPSRLGAVTPLAA-GAFPLTRRH-ALQYVQPGLALVGDAAHTIHPLAGQGVNLGYRDVDAL 311 (391)
T ss_pred C-----CCHHHHHHHHHHHHHHHCCEEEEEEE-EECHHHHHH-HHHHHCCCEEEECCHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 1-----99999999999873133260579753-020476533-4364059888861423148954234142569999999
Q ss_pred HHHHCC-----C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHC
Q ss_conf 998524-----8--989999999998679999999999998898367898-999999999851533377720
Q gi|254780168|r 307 SYLLGK-----K--TIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRP-ASLFRNAGLRLGIHKPLHKSL 370 (380)
Q Consensus 307 a~~L~~-----~--~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~~~-~~~~r~~~l~~~~~~~~~~~l 370 (380)
+++|.+ . ....+|+.|+++|++....++..+....++|..+.| .+.+|+.+|..++..|+.|++
T Consensus 312 a~~L~~~~~~~~~~g~~~~L~~Y~~~R~~d~~~~~~~~d~l~~~f~~~~~~~~~~R~~gl~~~~~~~~lk~~ 383 (391)
T PRK08020 312 IDVLVNARSYGEAWASYPVLKRYQRRRMADNFMMQSGMDLFYAGFSNNLPPLRFARNLGLMAAQRAGVLKRQ 383 (391)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 999999986089966099999999998999999999999999998699679999999999998549999999
No 21
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=100.00 E-value=0 Score=372.38 Aligned_cols=354 Identities=17% Similarity=0.218 Sum_probs=256.7
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC-----CCCCEEEECHHHHHHHHHCCCHHHHHHC-CCCCCCEEEEECC
Q ss_conf 387753899999999997798599995687655-----5771366788899999988994789862-6884306999788
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS-----DSGFGIQISPNASRILKRIGILDQLEDI-WIEPEDFVFRSGS 74 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~-----~~g~gi~l~p~~~~~L~~lGi~~~~~~~-~~~~~~~~~~~~~ 74 (380)
+||||||+|+++|+.|+++|++|+|+|+++.++ ...++++|+|+++++|+++|+|+.+... ..+...+.+++..
T Consensus 10 ~IvGaGp~Gl~lA~~L~~~G~~v~liE~~~~~~~~~~~~~~R~~al~~~s~~~L~~lGl~~~i~~~~~~p~~~~~v~d~~ 89 (392)
T PRK08773 10 VIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARVQPYRRMRVWDAG 89 (392)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHCCCCCEEEEEEEECC
T ss_conf 99990699999999998669978999178987555688873699998899999998798166775167731358998458
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC----C--CCCCCCCCCEEEEEEEEE
Q ss_conf 5443334554323444478247862000134788997320687256421012344----3--211234531035689974
Q gi|254780168|r 75 TLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP----D--CTQISKINNQKPDLLVGA 148 (380)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~----~--~~~~~~~~~~~adlvIgA 148 (380)
.... ..++......... .+.+++..|.+.|.+.+.+ .+++++++++++.. + .+.+.++++++|+|||||
T Consensus 90 ~~~~-~~~~~~~~~~~~l---g~iv~~~~l~~~L~~~~~~-~~v~~~~~~~v~~~~~~~~~v~v~~~dg~~i~a~lvVga 164 (392)
T PRK08773 90 GGGE-LGFDADTLGREQL---GWIVENDLLVDRLWAAVHA-AGIQLHCPARVVELEQDADGVRLRLDDGSRLEAALAIAA 164 (392)
T ss_pred CCCE-EEECHHHCCCCCC---CCEEEHHHHHHHHHHHHHC-CCCEEECCCEEEEEEECCCEEEEEECCCCEEEEEEEEEC
T ss_conf 9834-7536566285456---5322549999999999860-899897486899999669858999779979998899983
Q ss_pred CCCCCCCHHHCCCCCCCC-CCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCC
Q ss_conf 367663121128533443-1101578603654465545667608997654057888404897379999845774211123
Q gi|254780168|r 149 DGLNSNIRHYIDTQPITF-SGDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISF 227 (380)
Q Consensus 149 DG~~S~vR~~l~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 227 (380)
||++|.||+.++.+.... ..+.++.+.+..+. .+......+|.++++++++|+.++. .+++|..+.........
T Consensus 165 DG~~S~vR~~~gi~~~~~~y~q~~lv~~v~~~~----~~~~~a~~~f~~~Gp~a~lP~~~~~-~~~vw~~~~~~~~~~~~ 239 (392)
T PRK08773 165 DGAASTLRELAGLPVSRHDYAQRGVVAFVDTEH----PHQATAWQRFLTTGPLAFLPFADGR-SSIVWTLPDAEAERVLA 239 (392)
T ss_pred CCCCCHHHHHCCCCCCCCCCCEEEEEEEEEECC----CCCCEEEEEECCCCCEEEEECCCCC-EEEEEECCHHHHHHHHC
T ss_conf 788747677418885358865069999997057----7761579996189967998769997-79999778366787754
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHHHHH
Q ss_conf 45532223898986321280222011002332101233465421014687112111112448303342013036799999
Q gi|254780168|r 228 LKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALS 307 (380)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La 307 (380)
.. .+.+.+.+....+.....+........||+..+ ..+.|..+||+|+|||||+|||++|||+|+||+||.+|+
T Consensus 240 ~~-----~~~~~~~l~~~~~~~~g~~~~~~~~~~~pl~~~-~a~~~~~~Rv~LiGDAAH~~~P~aGQG~Nlgl~Da~~L~ 313 (392)
T PRK08773 240 LD-----DADFSRELTQAFAARLGEVRVASPRTAFPLQRQ-LVQQYVSGRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQ 313 (392)
T ss_pred CC-----HHHHHHHHHHHHHHHCCCEEEECCCEECCHHHH-HHHHHCCCCEEEEECHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99-----689999999986200464167404222217765-533413786899610442779641553405599999999
Q ss_pred HHHCC-----C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHC
Q ss_conf 98524-----8--989999999998679999999999998898367898-999999999851533377720
Q gi|254780168|r 308 YLLGK-----K--TIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRP-ASLFRNAGLRLGIHKPLHKSL 370 (380)
Q Consensus 308 ~~L~~-----~--~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~~~-~~~~r~~~l~~~~~~~~~~~l 370 (380)
++|.+ . ..+..|++|+++|++....++..+....++|..++| .+.+|+.+|+++++.|+.|++
T Consensus 314 ~~L~~a~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~d~l~~~f~~~~~~~~~~R~~~l~~~~~~~~lk~~ 384 (392)
T PRK08773 314 QLVREAHARRADWAAPHRLQRWARTRRSENTVAAYGFDAINRVFSNDEMHLTLLRGSVLGLAGKLPPLVDA 384 (392)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 99999985399855699999999999999999999999999998799679999999999998538899999
No 22
>PRK08013 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=371.66 Aligned_cols=356 Identities=20% Similarity=0.248 Sum_probs=263.1
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCC-CCC-----CCCEEEECHHHHHHHHHCCCHHHHHHC-CCCCCCEEEEEC
Q ss_conf 3877538999999999977985999956876-555-----771366788899999988994789862-688430699978
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQ-LSD-----SGFGIQISPNASRILKRIGILDQLEDI-WIEPEDFVFRSG 73 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~-~~~-----~g~gi~l~p~~~~~L~~lGi~~~~~~~-~~~~~~~~~~~~ 73 (380)
+||||||+|+++|+.|+++|++|+|+|+++. ... ..+..+|++.++++|+++|+|+++... ..+...+..++.
T Consensus 7 ~IvGaGpvGl~lA~~La~~G~~v~viE~~~~~~~~~~~~~~~R~~al~~~s~~~L~~lGl~~~i~~~~~~~~~~~~v~~~ 86 (400)
T PRK08013 7 AIVGGGMVGLAVACGLQGSGLRVAVLEHRVPEPLAADAPPQLRVSAINAASEKLLTRLGVWQDILARRASCYHGMEVWDK 86 (400)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCCEEEEEECC
T ss_conf 99993599999999997189958999189987677888877044400899999999879807668606776115798637
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC------CCCCCCCCCCEEEEEEEE
Q ss_conf 85443334554323444478247862000134788997320687256421012344------321123453103568997
Q gi|254780168|r 74 STLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP------DCTQISKINNQKPDLLVG 147 (380)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~------~~~~~~~~~~~~adlvIg 147 (380)
.....+ .++..+.. +....+.|++..+.+.|.+++...+++.+...++++.. ..+.+.++++++|+||||
T Consensus 87 ~~~g~~-~~~~~~~~---~~~lg~ii~~~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~~~v~l~~g~~i~a~lvVg 162 (400)
T PRK08013 87 DSFGHI-SFDDQSMG---YSHLGHIVENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVIG 162 (400)
T ss_pred CCCCEE-ECCCCCCC---CCCCEEEECCHHHHHHHHHHHHHCCCEEEECCCEEEEEEECCCEEEEEECCCCEEEEEEEEE
T ss_conf 877524-32620138---75230430208899999999986898299868668998716971599947998997428999
Q ss_pred ECCCCCCCHHHCCCCCCCC-CCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCC
Q ss_conf 4367663121128533443-110157860365446554566760899765405788840489737999984577421112
Q gi|254780168|r 148 ADGLNSNIRHYIDTQPITF-SGDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDIS 226 (380)
Q Consensus 148 ADG~~S~vR~~l~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 226 (380)
|||++|.||+.++.....+ .++.++.+.+..+. .+......+|.+++.++++|+++++.++++|..+++......
T Consensus 163 ADG~~S~vR~~~gi~~~~~~y~q~~lv~~v~~~~----~~~~~a~q~f~~~G~la~LPl~~~~~~~~vw~~~~~~~~~~~ 238 (400)
T PRK08013 163 ADGANSWLRNKADIPLTFWDYQHHALVATIRTEE----PHDAVARQVFHGEGILAFLPLSDPHLCSIVWSLSPEEAQRMQ 238 (400)
T ss_pred CCCCCCHHHHHCCCCCCCCCCCCEEEEEEECCCC----CCCCCCEEEECCCCCEEEEECCCCCEEEEEEECCHHHHHHHH
T ss_conf 7887613233138887233778539998412567----665641676449975799977999879999955878999998
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHHHH
Q ss_conf 34553222389898632128022201100233210123346542101468711211111244830334201303679999
Q gi|254780168|r 227 FLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYAL 306 (380)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~L 306 (380)
. ...+.+.+.+....+.....+........||+..+. .+.|.++||+|+|||||+|||++|||+|+||+||..|
T Consensus 239 ~-----~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~pl~~~~-a~~~~~~rv~LiGDAAH~~hP~aGQGlNlgi~Da~~L 312 (400)
T PRK08013 239 Q-----APEEEFNRALNIAFDNRLGLCKLESERQVFPLTGRY-ARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAEL 312 (400)
T ss_pred H-----CCHHHHHHHHHHHHHHCCCCEEEEECCEEEEHHHEE-EHHHCCCCEEEEHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 5-----359999999987620005640897423474344501-0233277557732255417962126362679999999
Q ss_pred HHHHCC-----C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHC
Q ss_conf 998524-----8--989999999998679999999999998898367898-999999999851533377720
Q gi|254780168|r 307 SYLLGK-----K--TIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRP-ASLFRNAGLRLGIHKPLHKSL 370 (380)
Q Consensus 307 a~~L~~-----~--~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~~~-~~~~r~~~l~~~~~~~~~~~l 370 (380)
+++|.+ . +....|+.|+++|++.+..+...+....++|+..+| .+.+|+.+|+++++.|..|+.
T Consensus 313 ~~~L~~~~~~~~d~g~~~~L~~Ye~~R~~~~~~~~~~t~~l~~~f~~~~~~~~~~R~~gl~~~~~~p~lK~~ 384 (400)
T PRK08013 313 IAELRRLHRQGKDIGQHLYLRRYERSRKHSAALMLAGMQGFRDLFAGNNPAKKLLRDIGLKLADTLPGVKPQ 384 (400)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 999999985488977689999999998999999999999999998799779999999999998149999999
No 23
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=0 Score=373.10 Aligned_cols=355 Identities=22% Similarity=0.256 Sum_probs=259.2
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC-C-------CCCCEEEECHHHHHHHHHCCCHHHHHH-CCCCCCCEEEE
Q ss_conf 38775389999999999779859999568765-5-------577136678889999998899478986-26884306999
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL-S-------DSGFGIQISPNASRILKRIGILDQLED-IWIEPEDFVFR 71 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~-~-------~~g~gi~l~p~~~~~L~~lGi~~~~~~-~~~~~~~~~~~ 71 (380)
+||||||+|+++|+.|+++|++|+|+|+++.. . ...+.++|++.++++|+++|+|+.+.+ ...+...+.++
T Consensus 6 ~IvGaGpvGl~lAl~L~~~G~~v~lie~~~~~~~~~~~~~~~~~R~~al~~~s~~~L~~lG~~~~l~~~~~~p~~~~~v~ 85 (405)
T PRK05714 6 LIVGAGMVGSALALALEGSGLEVLLVDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSDMQVW 85 (405)
T ss_pred EEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHHCCCCEEEEEEE
T ss_conf 99990599999999996189978999589977787766778984255677998999998798165687357761245520
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC----C--CCCCCCCCCEEEEEE
Q ss_conf 7885443334554323444478247862000134788997320687256421012344----3--211234531035689
Q gi|254780168|r 72 SGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP----D--CTQISKINNQKPDLL 145 (380)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~----~--~~~~~~~~~~~adlv 145 (380)
++.... ...++..+...+.. .+.+++..+.+.|.+++.+. .+.+..+++++.. + .+++.++++.+|+||
T Consensus 86 d~~~~~-~~~f~~~~~~~~~l---g~vv~~~~l~~~L~~~l~~~-~v~~~~~~~v~~~~~~~~~~~v~l~~g~~i~a~ll 160 (405)
T PRK05714 86 DGSGTG-QIHFSAASVHAEVL---GHIVENRVVQDALLERLHDS-DIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLV 160 (405)
T ss_pred CCCCCC-EEEECCCCCCCCCC---CCHHHHHHHHHHHHHHHHHC-CCEEECCCEEEEEEECCCEEEEEECCCCEEECCEE
T ss_conf 589862-27644101476444---11232699999999999727-98898487899999838807999679979863889
Q ss_pred EEECCCCCCCHHHCCCCCCCCC-CCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCC---EEEEEEEECCCC
Q ss_conf 9743676631211285334431-101578603654465545667608997654057888404897---379999845774
Q gi|254780168|r 146 VGADGLNSNIRHYIDTQPITFS-GDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDN---TINMVFVSSKHT 221 (380)
Q Consensus 146 IgADG~~S~vR~~l~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~~~~~~~~ 221 (380)
|||||++|.||++++.+...+. .+.++.+.+.... .+......+|.++++++++|+.++. .++++|..+++.
T Consensus 161 VgADG~~S~vR~~~gi~~~~~~y~q~alv~~v~~~~----~~~~~a~q~F~~~Gpla~lPl~~~~~~~~~s~vws~~~~~ 236 (405)
T PRK05714 161 VAADGANSAVRRLAGCATREWDYLHHAIVTSVRCSA----PHRATAWQRFTDDGPLAFLPLERDGDEHWCSIVWSTTPEE 236 (405)
T ss_pred EECCCCCCHHHHHCCCCCCCCCCCCEEEEEEECCCC----CCCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCHHH
T ss_conf 995899856665135675023556448998411378----7662579997699975999745799766799997088899
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHH
Q ss_conf 21112345532223898986321280222011002332101233465421014687112111112448303342013036
Q gi|254780168|r 222 LKDISFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIE 301 (380)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~ 301 (380)
....... ..+.+.+.+....+.....+...+....||+..+. .+.|.++||+|+|||||+|||++|||+|+||+
T Consensus 237 a~~~~~~-----~~~~~~~~l~~~~~~~lg~i~~~~~~~~~pl~~~~-a~~~~~~rv~LiGDAAH~~hP~aGQGlNlGl~ 310 (405)
T PRK05714 237 AERLMAL-----DDDAFCAALERAFEGRLGEVLSADPRLCVPLRQRH-AKRYVEEGLALIGDAAHTIHPLAGQGVNLGFL 310 (405)
T ss_pred HHHHHCC-----CHHHHHHHHHHHHHCCCCCEEEECCCEEEEHHHHH-HHHHHCCCCEEEHHHHHCCCCCCCCHHHHHHH
T ss_conf 9987639-----99999999998751113644883486674362667-67864267324320553589730340405599
Q ss_pred HHHHHHHHHCC-----C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHC
Q ss_conf 79999998524-----8--989999999998679999999999998898367898-999999999851533377720
Q gi|254780168|r 302 DAYALSYLLGK-----K--TIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRP-ASLFRNAGLRLGIHKPLHKSL 370 (380)
Q Consensus 302 Da~~La~~L~~-----~--~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~~~-~~~~r~~~l~~~~~~~~~~~l 370 (380)
||..|+++|.+ . ....+|++|+++|++....++..+....++|+.+.+ .+.+|+.+|+++++.|+.|++
T Consensus 311 Da~~La~~L~~a~~~g~~~g~~~~L~~Y~~~R~~~~~~~~~~~d~l~~lf~~~~~~l~~~R~~gl~~~~~~~~lk~~ 387 (405)
T PRK05714 311 DAAVLAEVLLHAAERGERLADVRVLSRFERRRMPHNLALMAAMEGFERLFQADPLPLRWLRNTGLKLVDQMPEAKAL 387 (405)
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 99999999999986299966699999999998999999999999999998699668999999999998429899999
No 24
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=0 Score=369.89 Aligned_cols=351 Identities=23% Similarity=0.242 Sum_probs=260.8
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC----CCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 387753899999999997798599995687655----5771366788899999988994789862688430699978854
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS----DSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTL 76 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~----~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~ 76 (380)
+||||||+|+++|+.|+++|++|+|||+.+... ...+.++|+|++.++|+.+|+|+.+.+...+...+.+.+....
T Consensus 5 ~IvGaG~vGl~lAl~La~~g~~v~lie~~~~~~~~~~~d~R~~als~~s~~~L~~lgiw~~l~~~~~~~~~i~v~d~~~~ 84 (374)
T PRK06617 5 VILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDVYVVDNKAS 84 (374)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEECHHHHHHHHHCCCCHHHHHHHHCCEEEEEECCCCC
T ss_conf 99996699999999998579969999789978866579963467469899999986984867886423189999758988
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC----CCC-CCCCCCCEEEEEEEEECCC
Q ss_conf 43334554323444478247862000134788997320687256421012344----321-1234531035689974367
Q gi|254780168|r 77 KELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP----DCT-QISKINNQKPDLLVGADGL 151 (380)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~----~~~-~~~~~~~~~adlvIgADG~ 151 (380)
.. ++.... ......++|++..|.+.|.+++...+.+++....++... +.. ...++++.++++||||||+
T Consensus 85 ~~---~~~~~~---~~~~lgyii~~~~l~~~L~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~llIgaDG~ 158 (374)
T PRK06617 85 EI---LDLRND---ADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDKQIKCNLLIICDGA 158 (374)
T ss_pred CE---EECCCC---CCCCCEEEECCHHHHHHHHHHHHCCCCCEEECCCCEEEEECCCCCEEEECCCCEEEEEEEEEECCC
T ss_conf 53---642456---765434652138999999999964999489757511466527882699638967853589995798
Q ss_pred CCCCHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 66312112853344311015786036544655456676089976540578884048973799998457742111234553
Q gi|254780168|r 152 NSNIRHYIDTQPITFSGDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKRS 231 (380)
Q Consensus 152 ~S~vR~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (380)
+|.||+.++.......++.++.+.+.... .+.+....+|.+.|+++++|++++...+++|..+++.........
T Consensus 159 ~S~vR~~~~~~~~~~~yq~a~v~~v~~~~----~~~~~a~q~F~~~GplAlLPl~~~~~~siVws~~~~~~~~~~~l~-- 232 (374)
T PRK06617 159 NSKVRSHYFANEIEKPYQTALTFNIKHEK----PHENCAMEHFLPLGPFALLPLKDQYASSVIWSTSSDQAALIVNLP-- 232 (374)
T ss_pred CHHHHHHHCCCCCCCCCCEEEEEEECCCC----CCCCCEEEEECCCCCEEEEECCCCCCEEEEEECCHHHHHHHHCCC--
T ss_conf 51668874778514246379997320147----653402546648997799875999837999827778999997499--
Q ss_pred CCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHHHHHHHHC
Q ss_conf 22238989863212802220110023321012334654210146871121111124483033420130367999999852
Q gi|254780168|r 232 EIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLG 311 (380)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~ 311 (380)
.+.+..............+........||+... ..+.+..+||+|+|||||+|||++|||+|+||+|+.+|+++|+
T Consensus 233 ---~~~~~~~~~~~~~~~lg~i~~~~~~~~fpL~~~-~a~~~~~~rv~LiGDAAH~ihP~aGQGlNlgi~Dv~~L~~~l~ 308 (374)
T PRK06617 233 ---VEEVRFLTQRNAGNSLGKITIDSEISSFPLKAR-IANRYFHNKIVLIADTAHTVHPLAGQGLNQGIKDIEILSMIVS 308 (374)
T ss_pred ---HHHHHHHHHHHHHHHCCCEEECCCCEECHHHHH-HCCCCCCCCCEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf ---999999999853431265688332113220677-4540126771776003422797212600122999999999862
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHC
Q ss_conf 48989999999998679999999999998898367898-999999999851533377720
Q gi|254780168|r 312 KKTIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRP-ASLFRNAGLRLGIHKPLHKSL 370 (380)
Q Consensus 312 ~~~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~~~-~~~~r~~~l~~~~~~~~~~~l 370 (380)
+. .+|++|++.|++....+...+....++|..+.| .+.+|+.+|.++++.|+.|++
T Consensus 309 ~~---~~L~~Y~~~R~~d~~~~~~~td~l~~~f~~~~~~~~~~R~~gl~~~~~~~~lK~~ 365 (374)
T PRK06617 309 NN---GTLQEYQKLRQEDNFIMYKLTDELNNIFSNYSKNLRCLRQIGFKAINNFKPIKNL 365 (374)
T ss_pred CH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 56---6899999999999999999999999998699679999999999998508999999
No 25
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=100.00 E-value=0 Score=369.47 Aligned_cols=356 Identities=23% Similarity=0.302 Sum_probs=262.5
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCC-CC--C--CCCCEEEECHHHHHHHHHCCCHHHHHHC-CCCCCCEEEEECC
Q ss_conf 387753899999999997798599995687-65--5--5771366788899999988994789862-6884306999788
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKD-QL--S--DSGFGIQISPNASRILKRIGILDQLEDI-WIEPEDFVFRSGS 74 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~-~~--~--~~g~gi~l~p~~~~~L~~lGi~~~~~~~-~~~~~~~~~~~~~ 74 (380)
+||||||+|+++|+.|+++|++|+|||++. .+ . +..+.++|++.++++|+++|+|+.+... ..+...+.+.+..
T Consensus 8 ~IvGaGp~Gl~lA~~La~~G~~v~viE~~~~~~~~~~~~d~R~~al~~~s~~~L~~lG~~~~i~~~~~~p~~~~~v~~~~ 87 (405)
T PRK08850 8 AIIGGGMVGLALAAALKDSDLRIAVIEGQLPEEELNELPDVRVSALSRASEHILRNVGAWQGIEARRAAPYTAMEVWEQD 87 (405)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCEEEEEEEECC
T ss_conf 99991589999999998589978999379986344678986588878999999998798555676237851258998479
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC------CCCCCCCCCCEEEEEEEEE
Q ss_conf 5443334554323444478247862000134788997320687256421012344------3211234531035689974
Q gi|254780168|r 75 TLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP------DCTQISKINNQKPDLLVGA 148 (380)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~------~~~~~~~~~~~~adlvIgA 148 (380)
....+ .++..+...... .+.+.+..+...|.+.+.+..++.+....+++.. ..+.+.++.+++++|||||
T Consensus 88 ~~~~i-~~~~~~~~~~~l---g~iv~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v~~~~g~~i~a~llVga 163 (405)
T PRK08850 88 SFARI-EFDAESMAQPDL---GHIVENRVIQLALLEQIQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGA 163 (405)
T ss_pred CCCEE-CCCHHHCCCCCC---CHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEEEEECCCCEEEEECCCCEEEEEEEEEE
T ss_conf 87431-247444178542---12464499999999999738991997375355676179715999779988875089991
Q ss_pred CCCCCCCHHHCCCCCCCC-CCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCC
Q ss_conf 367663121128533443-1101578603654465545667608997654057888404897379999845774211123
Q gi|254780168|r 149 DGLNSNIRHYIDTQPITF-SGDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISF 227 (380)
Q Consensus 149 DG~~S~vR~~l~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 227 (380)
||++|.||++++.+...+ .++.++.+.+.... .+......+|.+.++++++|+++++...++|..++...++...
T Consensus 164 DG~~S~vR~~lgi~~~~~~y~~~~lv~~v~~~~----~~~~~a~q~f~~~Gp~a~lPl~~~~~~~ivw~~~~~~~~~l~~ 239 (405)
T PRK08850 164 DGANSWVRRQLDIPLTHWDYGHSALVANVRTVE----PHNSVARQIFTPQGPLAFLPLSEPNLSSIVWSTEPLRAEALVA 239 (405)
T ss_pred CCCCHHHHHHCCCCEECCCCCCEEEEEEEECCC----CCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCHHHHHHHHC
T ss_conf 698737899729633346766169999997167----7776048998799987998758998799998258666888762
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHHHHH
Q ss_conf 45532223898986321280222011002332101233465421014687112111112448303342013036799999
Q gi|254780168|r 228 LKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALS 307 (380)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La 307 (380)
...+.+.+.+....+.....+....+...||+..+ ..+.|.++||+|+|||||.|||++|||+|+||+||..|+
T Consensus 240 -----~~~~~~~~~l~~~~~~~lg~~~~~~~~~~fpl~~~-~a~~~~~~rv~LiGDAAH~~~P~aGQG~Nlgi~Da~~La 313 (405)
T PRK08850 240 -----MSDEEFNKQLTAAFDNRLGLCEVVGERQAFPLKMR-YARDFVRERVALVGDAAHTIHPLAGQGVNLGLLDAASLA 313 (405)
T ss_pred -----CCHHHHHHHHHHHHHCCCCCEEEEECCEECHHHHH-HHHHHHCCCCEEEHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf -----99999999999874120552388523213016664-267774178177343564079512162505788999999
Q ss_pred HHHCC-----C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHC
Q ss_conf 98524-----8--989999999998679999999999998898367898-999999999851533377720
Q gi|254780168|r 308 YLLGK-----K--TIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRP-ASLFRNAGLRLGIHKPLHKSL 370 (380)
Q Consensus 308 ~~L~~-----~--~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~~~-~~~~r~~~l~~~~~~~~~~~l 370 (380)
+.|.. . .....|+.|+++|++.+..+...+....++|..++| .+.+|+.+|.++++.|+.|++
T Consensus 314 ~kL~~~~~~g~d~g~~~~L~~Y~~~R~~~~~~~~~~td~l~~lf~~~~p~~~~~R~~gl~~~~~~~~lK~~ 384 (405)
T PRK08850 314 QEILALWQQGKDIGLKRNLRGYERWRKAEAAKMIAAMQGFRDLFSGSNPAKKLVRGIGMSLAGQLPGAKDE 384 (405)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 99999986499976599999999999999999999999999998799769999999999998428999999
No 26
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=100.00 E-value=0 Score=361.67 Aligned_cols=350 Identities=21% Similarity=0.265 Sum_probs=246.5
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 38775389999999999779859999568765557713667888999999889947898626884306999788544333
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELS 80 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
|||||||+||++|+.|+++|++|+|+||++.+...++++.++++++++|+.+|+++++.+.+.+...+.+++.. +..+.
T Consensus 16 lIVGaGPvGL~lA~~Lar~Gi~v~vvEr~~~~~~~prA~~l~~rtleil~~lGl~~~i~~~~~~~~~~~~~~~~-g~~~~ 94 (554)
T PRK06183 16 VIVGAGPVGLTLANLLGQQGVRVLVLERWPTLYDYPRAVGIDDEALRTFQSIGLVDEVLPHTTPNHGMRFLDAK-GRCLA 94 (554)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCEEEEEECC-CCEEE
T ss_conf 99995989999999999779999999189998888868998999999999878989998418414318999489-97899
Q ss_pred CCCCCCCCCCCCCCE-EEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC----CCCC--CCC-----CCCEEEEEEEEE
Q ss_conf 455432344447824-7862000134788997320687256421012344----3211--234-----531035689974
Q gi|254780168|r 81 RFSCKNYSRNNWGGI-YGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP----DCTQ--ISK-----INNQKPDLLVGA 148 (380)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~----~~~~--~~~-----~~~~~adlvIgA 148 (380)
+++.. ....+++ ...+++..+.++|.+++...+++++++++++++. +.+. +.+ ..+++|||||||
T Consensus 95 ~~~~~---~~~~~~p~~~~~~Q~~lE~~L~~~l~~~~g~~v~~g~~v~~~~qd~~~V~v~~~~~~~g~~~~ira~ylVGa 171 (554)
T PRK06183 95 DIAPT---TDEFGWPRRNAFYQPLLEAVLREGLARFPHVRVRFGHEVVALEQDDDGVTVTLTDADDGQRETVRARYVVGC 171 (554)
T ss_pred EECCC---CCCCCCCEEEEECHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCCEEEEEEECCCCCEEEEEEEEEEEC
T ss_conf 72687---665687714461099999999999986899899938899999971884279999779995799997689971
Q ss_pred CCCCCCCHHHCCCCCCCCCCCEEE-EEECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCC
Q ss_conf 367663121128533443110157-8603654465545667608997654057888404897379999845774211123
Q gi|254780168|r 149 DGLNSNIRHYIDTQPITFSGDVVL-RCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISF 227 (380)
Q Consensus 149 DG~~S~vR~~l~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 227 (380)
||++|.||+++++..........| .+-+... ...........++.|.+.++++|..++...|.+...+.+...+
T Consensus 172 DGa~S~VR~~lgi~~~g~~~~~~~lv~dv~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~~~~~--- 246 (554)
T PRK06183 172 DGANSFVRRTLGVSFEGLTFPERWLVVDVAND--PLLGLGPHTYQYCDPARPYTSVPGGHGRRRWEFMVLPGETEEE--- 246 (554)
T ss_pred CCCCCHHHHHCCCCCCCCCCCEEEEEEEEECC--CCCCCCCEEEEEECCCCCEEEEECCCCEEEEEEEECCCCCHHH---
T ss_conf 78870789974998536877707999998527--8767897289997599988999768985999999579998144---
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHHHHH
Q ss_conf 45532223898986321280222011002332101233465421014687112111112448303342013036799999
Q gi|254780168|r 228 LKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALS 307 (380)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La 307 (380)
. ...+.+.+.+..+.+....+ + +.....|++. ....+.|..|||+|+|||||.|+|++|||||++|+||..|+
T Consensus 247 ~----~~~e~~~~~~~~~~~~~~~~-~-i~~~~~~~~~-~rvA~~~~~gRVfLaGDAAH~~~P~gGqGmNtGi~DA~NLa 319 (554)
T PRK06183 247 L----ATPENLRRLLAPWVPDPDDV-E-LIRHAVYTFH-ARVAERWRSGRVLLAGDAAHLMPPFQGQGMNSGIRDAANLA 319 (554)
T ss_pred C----CCHHHHHHHHHHHCCCCCCE-E-EEEEEECCHH-HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 2----89899999999865998744-8-9998860045-55466523597899760001369864565556377799999
Q ss_pred HHH----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHH
Q ss_conf 985----248989999999998679999999999998898367898-99999999985153337
Q gi|254780168|r 308 YLL----GKKTIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRP-ASLFRNAGLRLGIHKPL 366 (380)
Q Consensus 308 ~~L----~~~~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~~~-~~~~r~~~l~~~~~~~~ 366 (380)
+.| +....+.+|++|+.||+|.+++++..+..+..++....+ ....|+.+++.....+.
T Consensus 320 WKLA~V~~G~a~~~LLdtY~~ERrp~a~~~i~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 383 (554)
T PRK06183 320 WKLALVLQGRAGDALLDTYEQERRPHARAMIDLSVTLGRVIAPTDRWAAALRDAVVRLASYVPP 383 (554)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHH
T ss_conf 9999996689985887777999899999999998863001067977888889999875124502
No 27
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=0 Score=361.45 Aligned_cols=353 Identities=20% Similarity=0.227 Sum_probs=251.5
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECC-CCCCC-----CCCEEEECHHHHHHHHHCCCHHHHHHCCC-CCCCEEEEEC
Q ss_conf 38775389999999999779859999568-76555-----77136678889999998899478986268-8430699978
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKK-DQLSD-----SGFGIQISPNASRILKRIGILDQLEDIWI-EPEDFVFRSG 73 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~-~~~~~-----~g~gi~l~p~~~~~L~~lGi~~~~~~~~~-~~~~~~~~~~ 73 (380)
+||||||+|+++|+.|+++|++|+|+|+. +...+ ..+..+|+|+++++|+++|+|+.+.+... +...+..+..
T Consensus 7 ~IvGaG~vGl~lAl~La~~G~~V~iiE~~~p~~~~~~~~~~~R~~al~~~s~~~L~~lG~~~~i~~~~~~~~~~~~~~~~ 86 (384)
T PRK08849 7 AVVGGGMVGAATAIGFAKQGRSVAVIEGFEPKAFEASQPMDIRVSAISQNSVDLLESLGAWSSIVAMRVCPYKRLETWEH 86 (384)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECC
T ss_conf 99992499999999999579959999689987666667877056786799999999879864687614786002553017
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC------CCCCCCCCCCEEEEEEEE
Q ss_conf 85443334554323444478247862000134788997320687256421012344------321123453103568997
Q gi|254780168|r 74 STLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP------DCTQISKINNQKPDLLVG 147 (380)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~------~~~~~~~~~~~~adlvIg 147 (380)
. .....++......+.. .+.+++..+...|.+++...+++++.++.+++.. ..+++.++++++|+||||
T Consensus 87 ~--~~~~~f~~~~~~~~~l---g~iv~~~~l~~~L~~~~~~~~~i~~~~~~~v~~~~~~~~~~~v~l~~g~~i~a~llIg 161 (384)
T PRK08849 87 P--ECRTRFHSDELNLDQL---GYIVENRLIQLGLWQQFAQYPNLTLLCPEKLKDLEFSAEGNRVTLESGAEIEAKWVIG 161 (384)
T ss_pred C--CCCCCCCHHHCCCCCC---CCHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECCCEEEEEECCCCEEEEEEEEE
T ss_conf 7--6441248534386300---0034379999999999984899199838778898853881499978999998547999
Q ss_pred ECCCCCCCHHHCCCCCCCC-CCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCC
Q ss_conf 4367663121128533443-110157860365446554566760899765405788840489737999984577421112
Q gi|254780168|r 148 ADGLNSNIRHYIDTQPITF-SGDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDIS 226 (380)
Q Consensus 148 ADG~~S~vR~~l~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 226 (380)
|||++|.||++++...... ..+.++.+.+... ..+.+....++.|+++++++|+.++ ..+++|+.+++......
T Consensus 162 ADG~~S~vR~~~gi~~~~~~y~q~~~v~~v~~~----~~~~~~a~q~f~~~gp~a~lPl~~~-~~s~vw~~~~~~~~~~~ 236 (384)
T PRK08849 162 ADGANSQVRQLAGIGITAWDYRQHCMLINVETE----QPQQDITWQQFTPSGPRSFLPLQGN-QGSLVWYDSPKRIKQLS 236 (384)
T ss_pred EECCCHHHHHHCCCCEECCCCCEEEEEEEEECC----CCCCCCEEEEECCCCCEEEEECCCC-CEEEEEECCHHHHHHHH
T ss_conf 207864667733885450477458999998526----8877750899849997279862799-66899965877798754
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHHHH
Q ss_conf 34553222389898632128022201100233210123346542101468711211111244830334201303679999
Q gi|254780168|r 227 FLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYAL 306 (380)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~L 306 (380)
.. ..+.+.+.+....+.....++ ......||+..+ ..+.|.++||+|+|||||+|||++|||+|+||+||.+|
T Consensus 237 ~~-----~~~~~~~~l~~~~~~~l~~~~-~~~~~~~pl~~~-~a~~~~~~rv~LiGDAAH~~~P~aGQG~N~gi~Da~~L 309 (384)
T PRK08849 237 AM-----SPEQLRSEILRHFPAELGEFK-VLQFGSFPLTRR-HAQQYVKNNCVLLGDAAHTINPLAGQGVNLGFKDVDVL 309 (384)
T ss_pred CC-----CHHHHHHHHHHHHHHHCCCEE-EEEEECCHHHHH-HHHHHCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 39-----989999999987303207569-998503355533-33552368889972523346972125240469999999
Q ss_pred HHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHC
Q ss_conf 9985248--989999999998679999999999998898367898-999999999851533377720
Q gi|254780168|r 307 SYLLGKK--TIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRP-ASLFRNAGLRLGIHKPLHKSL 370 (380)
Q Consensus 307 a~~L~~~--~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~~~-~~~~r~~~l~~~~~~~~~~~l 370 (380)
++.|.+. ..+.+|++|+++|++....++..+....++|+.+.| .+.+|+.+|.++++.+..|++
T Consensus 310 ~~~l~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~d~l~~~f~~~~~~~~~~R~~~l~~~~~~~~lk~~ 376 (384)
T PRK08849 310 LEETEKQGALNDAAFARYERRRRPDNLLMQTGMDLFYKTFSNDLTPLKLLRNAALKLAEHSGPLKTQ 376 (384)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 9999846887799999999999899999999999999997699579999999999998508899999
No 28
>PRK08774 consensus
Probab=100.00 E-value=0 Score=361.25 Aligned_cols=355 Identities=17% Similarity=0.217 Sum_probs=256.4
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCC----CCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 3877538999999999977985999956876555----771366788899999988994789862688430699978854
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSD----SGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTL 76 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~----~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~ 76 (380)
+||||||+|+++|+.|+++|++|+|+|+.+.... ..+.+++++.++++|+++|+|+++...+.+...+.+.+....
T Consensus 8 lIVGgGpvGl~lA~~La~~G~~v~liE~~~~~~~~~~~d~R~~al~~~s~~~L~~lGv~~~l~~~~~pi~~i~v~~~~~~ 87 (402)
T PRK08774 8 LIVGGGLVGSSLAIALDRIGLDVGLVEATPAGAPPAVFDQRNLSFAAATVNALGALGVMAKLRSAPGPIRRIHVSRAGDF 87 (402)
T ss_pred EEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHHCCCEEEEEEEECCCC
T ss_conf 99991699999999996689978999379988886678731677379999999988986876640565179998507877
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCC-------CCCCC--CCCCC-CEEEEEEE
Q ss_conf 4333455432344447824786200013478899732068725642101234-------43211--23453-10356899
Q gi|254780168|r 77 KELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITH-------PDCTQ--ISKIN-NQKPDLLV 146 (380)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~-------~~~~~--~~~~~-~~~adlvI 146 (380)
.. ..++..+...+..+ +.+....+.+.|.+.+.+..........++.. .+.+. ..+++ .++|+|||
T Consensus 88 ~~-~~~~~~~~~~~~~g---~~i~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~i~a~llV 163 (402)
T PRK08774 88 GR-VQLDAADYGRDAFG---QVVVARDFGEALQARLDELTHLRRYRPARCIGVEPVQDGLRAVRLATADGEQLVRARLVV 163 (402)
T ss_pred CE-EECCHHHCCCCCCC---CCCHHHHHHHHHHHHHHHCCCCEEEECEEEEEEEEECCCCCEEEEEECCCCEEEEECEEE
T ss_conf 55-65367760887643---200169999999999985789489822289999995368616999937995798305999
Q ss_pred EECCCCCCCHHHCCCCCCCC-CCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCC
Q ss_conf 74367663121128533443-11015786036544655456676089976540578884048973799998457742111
Q gi|254780168|r 147 GADGLNSNIRHYIDTQPITF-SGDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDI 225 (380)
Q Consensus 147 gADG~~S~vR~~l~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 225 (380)
||||++|.||++++++.... .++.++.+.+..... +......+|.++++++++|..+ ..++.+|+.........
T Consensus 164 gADG~~S~vR~~~gi~~~~~~y~q~aiv~~v~~~~~----~~~~a~q~F~~~Gp~alLP~~~-~~~~~v~~~~~~~~~~~ 238 (402)
T PRK08774 164 GADGSHSAVRELLHIGTDQHDFLQTLFVARVRASRP----PDGTAWERFGEHGPTALLPRGD-RHYGAIHCVARAEAETV 238 (402)
T ss_pred ECCCCCCCCHHHCCCCCEECCCCCEEEEEEEEECCC----CCCEEEEECCCCCCEEEEECCC-CCEEEEEECCHHHHHHH
T ss_conf 958998452312488963046773699998850478----8875799748999789988699-86568993354207777
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHHH
Q ss_conf 23455322238989863212802220110023321012334654210146871121111124483033420130367999
Q gi|254780168|r 226 SFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYA 305 (380)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~ 305 (380)
... ..+.+.+.+....+.....+....+...||+..+. ...+.++||+|+|||||.+||++|||+|+||+||..
T Consensus 239 ~~l-----~~~~~~~~l~~~~~~~~g~~~~~~~~~~fpL~~~~-a~~~~~~Rv~L~GDAAH~~hP~aGQGlNlGi~Da~~ 312 (402)
T PRK08774 239 AAL-----DDAGWLARLQRAAGWRAGRFIASGERSAYPLVQVL-ANSLIAERVVLLGNAAQTLHPIGAQGFNLGLRDALT 312 (402)
T ss_pred HCC-----CHHHHHHHHHHHHCCCCCCEEEECCCEECHHHHHH-HHHHHCCCCEEEECHHHCCCCCHHCHHHHHHHHHHH
T ss_conf 547-----93899999999746457657993243143578765-777725883798416544896130215256999999
Q ss_pred HHHHHCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHC
Q ss_conf 9998524----8989999999998679999999999998898367898-999999999851533377720
Q gi|254780168|r 306 LSYLLGK----KTIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRP-ASLFRNAGLRLGIHKPLHKSL 370 (380)
Q Consensus 306 La~~L~~----~~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~~~-~~~~r~~~l~~~~~~~~~~~l 370 (380)
|+++|.. ...+..|+.|+++|++....+...+....++|..++| .+.+|+.+|..+++.|..|++
T Consensus 313 La~~L~~~~~~~g~~~lL~~Y~~eRr~~~~~~~~~t~~l~~lf~~~~~~l~~~R~~gl~~~~~~~~lK~~ 382 (402)
T PRK08774 313 LAELIEHDHSDAGAGALLAEYLARRRVDREHTIGFSSGLARLTSNPAPLLRPLRSLGLLATSQAAPLQSM 382 (402)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 9999987423877699999999999999999999999999998799738999999999998538999999
No 29
>PRK06185 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=362.11 Aligned_cols=357 Identities=21% Similarity=0.267 Sum_probs=240.7
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCC-CCCEEEEECCCCCCC
Q ss_conf 3877538999999999977985999956876555771366788899999988994789862688-430699978854433
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDIWIE-PEDFVFRSGSTLKEL 79 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (380)
+||||||+||++|+.|+++|++|+||||++++...++|++|+|+++++|+++|+++++.+.+.. ...+.+..+ +..+
T Consensus 10 ~IVGaGpaGL~lAl~Lar~Gi~V~VlEk~~~~~~~~Rg~~i~p~tl~iL~~lGl~~~l~~~~~~~~~~~~~~~~--g~~~ 87 (409)
T PRK06185 10 CIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHSKVRTLRFDIG--GRTV 87 (409)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHCCCCCEEEEEEEEC--CEEE
T ss_conf 99991889999999999779999999189998778618987899999999879868997367873347999959--9389
Q ss_pred CCCCCCCCCCCCCCCEE-EEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC----CC---C--CCCCCC-CEEEEEEEEE
Q ss_conf 34554323444478247-862000134788997320687256421012344----32---1--123453-1035689974
Q gi|254780168|r 80 SRFSCKNYSRNNWGGIY-GVVKRHTLQKILLNHIQTQPLARLHLSTHITHP----DC---T--QISKIN-NQKPDLLVGA 148 (380)
Q Consensus 80 ~~~~~~~~~~~~~~~~~-~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~----~~---~--~~~~~~-~~~adlvIgA 148 (380)
...++. .....+++ ..++|.+|.+.|.+++...+++++++++++++. +. + ...+++ +++|||||||
T Consensus 88 ~~~d~~---~l~~~~~~~~~~~q~~ll~~L~~~a~~~~~~~l~~~~~v~~l~~d~~~v~gV~~~~~dg~~~i~adlvVGA 164 (409)
T PRK06185 88 TLADFS---RLPTRYPYIAMMPQWDFLDFLAEKASRYPTFTLRMGAEVTGLIEEGGRVAGVRYRTPDGELEIRADLTVGA 164 (409)
T ss_pred EEECCC---CCCCCCCCEEECCHHHHHHHHHHHHHCCCCCEEEECCEEEEEEEECCCEEEEEEECCCCCEEEEEEEEEEC
T ss_conf 974300---16888884277018999999999985189959996888899999599089999984898589997299973
Q ss_pred CCCCCCCHHHCCCCCCCCCC-CEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCC
Q ss_conf 36766312112853344311-01578603654465545667608997654057888404897379999845774211123
Q gi|254780168|r 149 DGLNSNIRHYIDTQPITFSG-DVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISF 227 (380)
Q Consensus 149 DG~~S~vR~~l~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 227 (380)
||++|+||+.++.....+.. ...+...++.. + .+......++++++.++.+|.. +.+.+.+..++....+..
T Consensus 165 DG~~S~VR~~~gi~~~~~~~~~d~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~- 237 (409)
T PRK06185 165 DGRHSRVRELAGLEVREFGAPMDVLWFRLPRR--P--GDPEGSMGRFGPGQMLVMIDRG--DYWQCGYVIPKGGDAALR- 237 (409)
T ss_pred CCCCCHHHHHCCCCCEECCCCEEEEEEECCCC--C--CCCCEEEEEECCCCEEEEECCC--CCEEEEEEECCCCHHHHH-
T ss_conf 89984789975998040155568999992577--8--9986069998799689996189--928999981588547555-
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCEEEEC---CCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHH
Q ss_conf 4553222389898632128022201100---2332101233465421014687112111112448303342013036799
Q gi|254780168|r 228 LKRSEIHKEWFVKHLTNWHQEIIQLILQ---INDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAY 304 (380)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~ 304 (380)
....+.+.+.+..+.|...+.+.. +++...+++....+. .|+++||+|||||||+|+|++|||+|+||+||+
T Consensus 238 ----~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~r~~-~w~~~rv~LiGDAAH~~~P~~GQG~N~ai~DA~ 312 (409)
T PRK06185 238 ----AAGLEAFRADVAELAPELADRVAELASWDDVKLLDVRVDRLR-RWHRPGLLCIGDAAHAMSPVGGVGINLAIQDAV 312 (409)
T ss_pred ----HCCHHHHHHHHHHHCHHHHHHHHHCCCCCCEEEEEEHHHHHH-HHEECCEEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf ----257899999999858156766542332132379874143305-538798999974446479750146878999999
Q ss_pred HHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCC--CHHHHHHHHHHHHHCCCHHHHHC-CHHH
Q ss_conf 99998524-----898999999999867999999999999889-83678--98999999999851533377720-4375
Q gi|254780168|r 305 ALSYLLGK-----KTIPAAISAYQKVRAVRVKRIRYRTKLNQL-LFHMH--RPASLFRNAGLRLGIHKPLHKSL-DWIY 374 (380)
Q Consensus 305 ~La~~L~~-----~~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~-~~~~~--~~~~~~r~~~l~~~~~~~~~~~l-~wl~ 374 (380)
+||++|.. ...+..|++|+++|++.++.+|...+.... ++... .-.......+++++...|+.+++ +++-
T Consensus 313 ~LA~~LA~~l~~g~~~~~~L~~y~~~R~~~~~~~q~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 391 (409)
T PRK06185 313 AAANILAEPLRRGRVSDADLAAVQRRREFPTRVTQALQRAIQRRVLAPALAGGRPFPPPLLLRLLTRLPWLRRLPARLV 391 (409)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHH
T ss_conf 9999999998349996899999998757679999999999986333444456676787078899864907778888985
No 30
>pfam01494 FAD_binding_3 FAD binding domain. This domain is involved in FAD binding in a number of enzymes.
Probab=100.00 E-value=0 Score=358.05 Aligned_cols=326 Identities=18% Similarity=0.171 Sum_probs=220.6
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 38775389999999999779859999568765557713667888999999889947898626884306999788544333
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELS 80 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
+||||||+||++|+.|+++|++|+||||++.+.+.|+++.|+|+++++|+++|+++++.+.+.+...+.+..........
T Consensus 5 ~IvGaG~aGl~lA~~L~~~Gi~v~V~Er~~~~~~~g~g~~l~p~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (349)
T pfam01494 5 LIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAGGLNQRTMELLRQAGLEDRILAEGAPHEGMGLAFYNTSRRRA 84 (349)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHCCCCCCEEEEEECCCCCCEE
T ss_conf 99992889999999998779989999289998878779998989999999879868998506875105999837864222
Q ss_pred CCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC----CC--CCCCCC-----CCEEEEEEEEEC
Q ss_conf 4554323444478247862000134788997320687256421012344----32--112345-----310356899743
Q gi|254780168|r 81 RFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP----DC--TQISKI-----NNQKPDLLVGAD 149 (380)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~----~~--~~~~~~-----~~~~adlvIgAD 149 (380)
.. ...........++|..|.++|.+.++..+ ..++++++++.. ++ +.+.++ .+++||+|||||
T Consensus 85 ~~-----~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-~~i~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~i~adlvIgAD 158 (349)
T pfam01494 85 DL-----DFLTSPPRVTVYPQTELEPILREHAEARG-AQVRFGTEVLSLEQDGDGVTAVVRDRRDGEEYTVRAKYLVGCD 158 (349)
T ss_pred EC-----CCCCCCCCEEEECHHHHHHHHHHHHHHCC-CEEEECCEEEEEEECCCCEEEEEEECCCCCEEEEEEEEEECCC
T ss_conf 01-----45567762688629999999999998579-9899661787752059943799984589955899976884157
Q ss_pred CCCCCCHHHCCCCCCCC-CCCEEEEEECCC-CCCCCCCCCCCEEEEE--CCCCEEEEEEECCCCEEEEEEEECCCCCCCC
Q ss_conf 67663121128533443-110157860365-4465545667608997--6540578884048973799998457742111
Q gi|254780168|r 150 GLNSNIRHYIDTQPITF-SGDVVLRCLIPQ-NNAPEFIDFQSVNIFF--GPDSHLVTYPLREDNTINMVFVSSKHTLKDI 225 (380)
Q Consensus 150 G~~S~vR~~l~~~~~~~-~~~~~~~~~i~~-~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 225 (380)
|++|+||++++.+.... .....+.+++.. ...+..........|. .+...+.++|.+++...++++..+.......
T Consensus 159 G~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 238 (349)
T pfam01494 159 GGRSPVRKQLGIEFEGFEGVPFGSLDVLFDAPDLSDPVERAFVHYLIYAPHSRGFMVGPWRSAGRSRYYVQVPWDPEVEE 238 (349)
T ss_pred CCCCHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEEECCCCCCC
T ss_conf 77648999759997555454389999995257842123567428999718998699997279982799999707854222
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHHH
Q ss_conf 23455322238989863212802220110023321012334654210146871121111124483033420130367999
Q gi|254780168|r 226 SFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYA 305 (380)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~ 305 (380)
...+...+.+.+.+........ ..........||+.... ...|+.+||+|||||||+|+|+.|||+|+||+||++
T Consensus 239 ---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~grv~LiGDAAH~~~P~~GqG~n~aieDA~~ 313 (349)
T pfam01494 239 ---RPEEFTDEEAKQRLRSAVGIDL-ADVEILWKSIWGVRSRV-ATRYRKGRVFLAGDAAHIHPPTGGQGLNTGIQDAFN 313 (349)
T ss_pred ---CCCCCCHHHHHHHHHHHHCCCC-CCCCEEEEEECCCCCEE-CCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf ---5443899999999998648654-55563557862003567-355115989999861023886354677589999999
Q ss_pred HHHHHCC----CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998524----8989999999998679999999999
Q gi|254780168|r 306 LSYLLGK----KTIPAAISAYQKVRAVRVKRIRYRT 337 (380)
Q Consensus 306 La~~L~~----~~~~~~l~~Y~~~R~~~~~~i~~~s 337 (380)
|+++|.. ...+++|+.||++|+|+++.++..|
T Consensus 314 La~~L~~~~~g~~~~~~L~~Ye~~R~~~~~~~~~~~ 349 (349)
T pfam01494 314 LAWKLAAVLRGTAGEALLDTYEAERRPVAWAVVDFA 349 (349)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999997499988999999999999999998509
No 31
>PRK06996 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=344.85 Aligned_cols=352 Identities=19% Similarity=0.196 Sum_probs=249.5
Q ss_pred CEECCHHHHHHHHHHHHH----CCCEEEEEECCCC--CCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECC
Q ss_conf 387753899999999997----7985999956876--5557713667888999999889947898626884306999788
Q gi|254780168|r 1 MIIGAGISGLTLAASLGH----RGIQSCVLEKKDQ--LSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGS 74 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~----~G~~v~i~Er~~~--~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~ 74 (380)
+||||||+|+++|+.|++ +|++|+++|+.+. +...++.++|++.++++|+.+|+|+. .+.+...+...+..
T Consensus 15 ~IvGaGpvGl~lA~~Lar~~~~~~~~v~lie~~~~~~~~~d~Ra~al~~~s~~~L~~lG~w~~---~~~~i~~~~v~~~~ 91 (397)
T PRK06996 15 AIVGAGPVGLALAGWLARRSATRPLSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPA---DATPIEHIHVSQRG 91 (397)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCEEEECHHHHHHHHHCCCCCC---CCCCEEEEEEEECC
T ss_conf 999927999999999960168789669997689866678999399975789999998799845---68742599994057
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCC----CCCCCCCC--C---CCCEEEEEE
Q ss_conf 54433345543234444782478620001347889973206872564210123----44321123--4---531035689
Q gi|254780168|r 75 TLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHIT----HPDCTQIS--K---INNQKPDLL 145 (380)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~----~~~~~~~~--~---~~~~~adlv 145 (380)
. .....++..+...... .+.+++..+.+.|.++++..+.. +..+..+. +.+.+.+. . ..+.+|+||
T Consensus 92 ~-~g~~~~~~~~~~~~~l---g~iv~~~~l~~~L~~~l~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~a~ll 166 (397)
T PRK06996 92 H-FGRTLIDRDDHDVPAL---GYVVRYGSLVAALARAVRGTGVT-WLTSTTARAPAQDADGVTLALDTPQGARTLRARIA 166 (397)
T ss_pred C-CCCEECCHHHCCCCCC---CCCCCHHHHHHHHHHHHHHCCCE-EEECCCEEEEEECCCCEEEEECCCCCCEEEEECEE
T ss_conf 7-6621126544288522---35443799999999999748987-98344514577636745899605998659981899
Q ss_pred EEECCCCCCCHHHCCCCCCC-CCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCC--EEEEEEEECCCCC
Q ss_conf 97436766312112853344-31101578603654465545667608997654057888404897--3799998457742
Q gi|254780168|r 146 VGADGLNSNIRHYIDTQPIT-FSGDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDN--TINMVFVSSKHTL 222 (380)
Q Consensus 146 IgADG~~S~vR~~l~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~ 222 (380)
|||||++|.||+.++..... .+++.++.+.+..+.. +.+....+|.++++++++|+++.. .++++|+.+++..
T Consensus 167 VgaDG~~S~vR~~~gi~~~~~~y~q~alv~~v~~~~~----~~~~A~q~F~~~GplalLPl~~~~~~~~s~Vws~~~~~a 242 (397)
T PRK06996 167 VQAEGGLFHDQKAKAGKSARRDYGQTALVGTVTVSAP----RPGWAWERFTHEGPLALLPLGGPRQADYALVWCCAPDEA 242 (397)
T ss_pred EECCCCCHHHHHHCCCCCCCCCCCCEEEEEEEEECCC----CCCEEEEEECCCCCEEEEECCCCCCCCEEEEEECCHHHH
T ss_conf 9959998188886389985666762599986540479----998589984499878998778999885799993587889
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHH
Q ss_conf 11123455322238989863212802220110023321012334654210146871121111124483033420130367
Q gi|254780168|r 223 KDISFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIED 302 (380)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~D 302 (380)
.+.... ..+.+.+.+..........+........||+..+ ..+.+.++||+|+|||||.+||++|||+|+||+|
T Consensus 243 ~~~~~l-----~~~~~~~~l~~~~~~~lg~~~~~~~~~~fpl~~~-~a~~~~~~Rv~L~GDAAH~~hP~aGQGlNlGirD 316 (397)
T PRK06996 243 ARRAAL-----PDDAFLRELGAAFGTRMGRFTAIAGRHAFPLGLN-AAHTLVNGRIAAVGNAAQTLHPVAGQGLNLGLRD 316 (397)
T ss_pred HHHHCC-----CHHHHHHHHHHHHCCCCCCEEEECCCEECCCHHH-HHHHHHCCCCEEEEHHHHCCCCCCCCCHHHHHHH
T ss_conf 988659-----9999999999885551566699326313520888-8899752884687215544898211414130999
Q ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHCCCHHHHHC
Q ss_conf 99999985248-98999999999867999999999999889836789-8999999999851533377720
Q gi|254780168|r 303 AYALSYLLGKK-TIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHR-PASLFRNAGLRLGIHKPLHKSL 370 (380)
Q Consensus 303 a~~La~~L~~~-~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~~-~~~~~r~~~l~~~~~~~~~~~l 370 (380)
|..|++.|... ..+..|+.|+++|++....++..+....++|..++ |.+.+|+.+|..+++.|..|++
T Consensus 317 a~~La~~L~~~~~~~~~L~~Y~~~Rr~~~~~~~~~td~l~~lf~~~~~~~~~lR~~gl~~~~~~~plk~~ 386 (397)
T PRK06996 317 AHTLADALSAQGATPLALATFAARRALDRRVTIGATDLLPRLFTVDLAPLAHLRGAALTALEFVPPLKHA 386 (397)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 9999999986268989999999998999999999999999998799679999999999998558899999
No 32
>PRK06184 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=342.63 Aligned_cols=326 Identities=18% Similarity=0.185 Sum_probs=217.4
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 38775389999999999779859999568765557713667888999999889947898626884306999788544333
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELS 80 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
|||||||+||++|+.|+++|++|+|+||++.+...+++..++++++++|+++|+++++.+.+.+...+.++..... ..
T Consensus 10 lIVGaGPvGL~lA~~La~~Gi~v~viEr~~~~~~~~RA~~l~~rt~eil~~lGl~d~i~~~~~~~~~~~~~~~~~~-~~- 87 (503)
T PRK06184 10 LIVGAGPTGLTLAIELARRGVSFRLIEKSPTPFRGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGS-VV- 87 (503)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCE-EE-
T ss_conf 9999099999999999977998999948999886885898789999999987897899843576752499968970-56-
Q ss_pred CCCCCCCCCCCCC---CEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC----CCCC--CCCC---CCEEEEEEEEE
Q ss_conf 4554323444478---247862000134788997320687256421012344----3211--2345---31035689974
Q gi|254780168|r 81 RFSCKNYSRNNWG---GIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP----DCTQ--ISKI---NNQKPDLLVGA 148 (380)
Q Consensus 81 ~~~~~~~~~~~~~---~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~----~~~~--~~~~---~~~~adlvIgA 148 (380)
............+ ...+.+++..+.++|.+++.+.+ +.++++++++.. +++. +.+. .+++|||||||
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~Q~~le~~L~~~l~~~g-~~v~~g~~v~~~~q~~~~V~v~~~~~~~~~~i~a~ylVGa 166 (503)
T PRK06184 88 ESDMMHHLKPTPDEPYHLPLMVPQWRTEEILRERLAELG-HRVEFGCELVGFEQDPEGVTARVAGPAGEETVRARYLVGA 166 (503)
T ss_pred EEECCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCC-CEEEECCEEEEEEECCCEEEEEEECCCCCEEEEEEEEECC
T ss_conf 510243346666765352577227999999999998679-8699476688999819989999985997189998777415
Q ss_pred CCCCCCCHHHCCCCCCC--CCCCEEEEEECCCCCCCCCCCCCCEEEEECC--CCEEEEEEECCCCEEEEEEEECCCCCCC
Q ss_conf 36766312112853344--3110157860365446554566760899765--4057888404897379999845774211
Q gi|254780168|r 149 DGLNSNIRHYIDTQPIT--FSGDVVLRCLIPQNNAPEFIDFQSVNIFFGP--DSHLVTYPLREDNTINMVFVSSKHTLKD 224 (380)
Q Consensus 149 DG~~S~vR~~l~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (380)
||++|.||+++++.... +.....+...+... .......+.|..+ .+.+.+.|+++...+.+.+..+.+...
T Consensus 167 DGa~S~VR~~lgI~~~g~~~~~~~~vv~d~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~- 241 (503)
T PRK06184 167 DGGRSFVRKALGIGFPGETLGIDRALVADVSLS----GLDRDAWHIFPDGDGARMIALCPLAGTDLFQIQAPLPPGGEP- 241 (503)
T ss_pred CCCCHHHHHHCCCCCCCCCCCCCEEEEEEEECC----CCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCC-
T ss_conf 777746688639987555556644999988845----789872699744899847999975899489999987898666-
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHH
Q ss_conf 12345532223898986321280222011002332101233465421014687112111112448303342013036799
Q gi|254780168|r 225 ISFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAY 304 (380)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~ 304 (380)
+...+.+.+.+..........+........|++.. ...+.|..+||+|+|||||.|+|++|||||++|+||.
T Consensus 242 -------~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~-rvA~~~~~gRvfLaGDAAH~~~P~gGqGmN~Gi~DA~ 313 (503)
T PRK06184 242 -------DLSADGLTALLAERTGRTDIRLHSVTWLSAFRMNA-RLADRYRVGRVFLAGDAAHVHPPAGGQGLNTSIQDAY 313 (503)
T ss_pred -------CCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCE-EEHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHH
T ss_conf -------89989999999997589986367875789711003-6703433796798335012059965663333155678
Q ss_pred HHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999985----248989999999998679999999999998898
Q gi|254780168|r 305 ALSYLL----GKKTIPAAISAYQKVRAVRVKRIRYRTKLNQLL 343 (380)
Q Consensus 305 ~La~~L----~~~~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~ 343 (380)
.|++.| +. ..+.+|+.|+.||+|.++.+...+......
T Consensus 314 NLaWKLa~vl~G-a~~~LLdtY~~ERrpva~~~i~~~~~~~~~ 355 (503)
T PRK06184 314 NLGWKLAAVLAG-APEALLDSYEEERRPVAAAVLGLSTELLDA 355 (503)
T ss_pred HHHHHHHHHHCC-CCHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999729-992551502888899999998764777765
No 33
>PRK08244 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=339.74 Aligned_cols=341 Identities=18% Similarity=0.200 Sum_probs=228.8
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 38775389999999999779859999568765557713667888999999889947898626884306999788544333
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELS 80 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
|||||||+||++|+.|+++|++|+|+||++.+...++++.++++++++|+.+|+++++.+.+.+.....+......
T Consensus 6 lIVGaGPvGL~lAl~La~~Gv~v~vvEr~~~~~~~~RA~~l~~rt~eil~~~Gl~~~l~~~g~~~~~~~~~~~~~~---- 81 (494)
T PRK08244 6 IIIGGGPVGLMLASELALAGVRTCVIERLKEPVPYSKALTLHPRTLELLEMRGLLERFLEKGRKLPSGHFAGLDTR---- 81 (494)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEECCHHHHHHHHHCCCHHHHHHHCEECCCCEEECCCCC----
T ss_conf 9999478999999999977999999908999888998746089999999987898898852107656368144330----
Q ss_pred CCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC----CCCC--CC--CC-CCEEEEEEEEECCC
Q ss_conf 4554323444478247862000134788997320687256421012344----3211--23--45-31035689974367
Q gi|254780168|r 81 RFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP----DCTQ--IS--KI-NNQKPDLLVGADGL 151 (380)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~----~~~~--~~--~~-~~~~adlvIgADG~ 151 (380)
++..... .. ......+++..+.++|.++++..+ +.+.++++++.. ++++ +. ++ ++++|+|||||||+
T Consensus 82 -~~~~~~~-~~-~~~~~~~~Q~~le~iL~~~a~~~g-~~v~~g~e~~~~~~~~d~V~~~~~~~~g~~~i~a~ylVGaDGa 157 (494)
T PRK08244 82 -LDFSALD-TR-ANYTLFLPQAETEKILEEHARSLG-VEILRGHEALAVRQDGDGVEVVVRGPDGLRTLTSLYAVGADGA 157 (494)
T ss_pred -EECCCCC-CC-CCCEEEECHHHHHHHHHHHHHHCC-CEEEECCEEEEEEECCCEEEEEEEECCCCEEEEEEEEEEECCC
T ss_conf -3203357-78-882698155999999999998479-8899686899999869978999990897689987799982466
Q ss_pred CCCCHHHCCCCCCCCC-CCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCC
Q ss_conf 6631211285334431-101578603654465545667608997654057888404897379999845774211123455
Q gi|254780168|r 152 NSNIRHYIDTQPITFS-GDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKR 230 (380)
Q Consensus 152 ~S~vR~~l~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (380)
+|.||+++++...... .+..+.+.+...+ ........++.+.+.+++.|..++. +.+++..+....... .
T Consensus 158 ~S~VR~~lgI~~~g~~~~~~~~~~d~~~~~----~~~~~~~~~~~~~g~~~~~P~~~~~-~r~~~~~~~~~~~~~----~ 228 (494)
T PRK08244 158 GSTVRKQAGIAFSGTDATLTAMLGDVALED----PPPSSFYSCCTREGGVVIVPLDGGI-FRVLIIDPHRPQAPK----D 228 (494)
T ss_pred CCHHHHHCCCCCCCCCCEEEEEEEEEEECC----CCCCEEEEEECCCCEEEEEECCCCE-EEEEEECCCCCCCCC----C
T ss_conf 726798759985464113799999999637----9987699985599709999808997-999998276556544----4
Q ss_pred CCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHHHHHHHH
Q ss_conf 32223898986321280222011002332101233465421014687112111112448303342013036799999985
Q gi|254780168|r 231 SEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLL 310 (380)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L 310 (380)
.....+.+.+.+....+.-.. +........|++.. .....|.+|||+|+|||||.|+|++|||||++|+||..|++.|
T Consensus 229 ~~~~~e~~~~~l~~~~g~~~~-~~~~~~~s~~~~~~-r~A~~~r~gRVfLaGDAAH~~~P~gGqGmNtGi~DA~NLaWKL 306 (494)
T PRK08244 229 EPVTLEELKKSLSRICGTDFG-LNDPVWMSRFGNAT-RQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKL 306 (494)
T ss_pred CCCCHHHHHHHHHHHHCCCCC-CCCEEEEEECCCCC-EEECCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 788989999999986388776-03324898615300-4503244796899604010038876665134303245489999
Q ss_pred ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf ----24898999999999867999999999999889836789899999999985
Q gi|254780168|r 311 ----GKKTIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRPASLFRNAGLRL 360 (380)
Q Consensus 311 ----~~~~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~~~~~~~r~~~l~~ 360 (380)
+....+.+|++|+.||+|.++.+...+..+..++....+....|..+-..
T Consensus 307 A~vl~G~a~~~LLdTY~~ERrpva~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 360 (494)
T PRK08244 307 AAAIKGWAPPWLLDSYHHERHPVGKALLRNTEVQTKLFDFTRPGLALRELLSGL 360 (494)
T ss_pred HHHHCCCCCCHHCCCCHHHCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 999768898023236255441289999875567676404786038899999997
No 34
>PRK08132 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=339.12 Aligned_cols=353 Identities=20% Similarity=0.271 Sum_probs=229.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 38775389999999999779859999568765557713667888999999889947898626884306999788544333
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELS 80 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
|||||||+||++|+.|+++|++|.|+||++.+...++++.++++++++|+++|+.+++.+.+.+......+... ....
T Consensus 27 lIVGaGPvGL~lA~~L~~~Gv~~~vvEr~~~~~~~pRA~~~~~rtmeil~~lGl~~~i~~~g~~~~~~~~~~~~--~~~~ 104 (549)
T PRK08132 27 VVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFSKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRD--EEVY 104 (549)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCCEEEECC--CEEE
T ss_conf 99992579999999999879999999599999999978888989999999869928999617744464488568--6577
Q ss_pred CCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC----CCCC--CC--CC-CCEEEEEEEEECCC
Q ss_conf 4554323444478247862000134788997320687256421012344----3211--23--45-31035689974367
Q gi|254780168|r 81 RFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP----DCTQ--IS--KI-NNQKPDLLVGADGL 151 (380)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~----~~~~--~~--~~-~~~~adlvIgADG~ 151 (380)
.++........ ...+..+++..+.++|.+++.+.+++.++++++++.. ++++ +. ++ .+++|+|||||||+
T Consensus 105 ~~~~~~~~~~~-~p~~~~l~Q~~lE~~L~~~~~~~~~v~vr~g~ev~~~~q~~d~V~~~v~~~~g~~~vrA~ylVGaDGa 183 (549)
T PRK08132 105 RFDLLPEPGHR-RPAFINLQQYYIEGYLVDRAQALPNIDLRWKNKVTGVEQHADGVVLTVETPDGPYTLEADWVIACDGA 183 (549)
T ss_pred EECCCCCCCCC-CCCEEECCHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCC
T ss_conf 60478888876-68158679999999999999868997899576899999849946999987998689998899863778
Q ss_pred CCCCHHHCCCCCCCCCCCEEE-EEECCCCCCCCCCCCCCEEEEE----CCCCEEEEEEECCCCEEEEEEEECCCCCCCCC
Q ss_conf 663121128533443110157-8603654465545667608997----65405788840489737999984577421112
Q gi|254780168|r 152 NSNIRHYIDTQPITFSGDVVL-RCLIPQNNAPEFIDFQSVNIFF----GPDSHLVTYPLREDNTINMVFVSSKHTLKDIS 226 (380)
Q Consensus 152 ~S~vR~~l~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 226 (380)
+|.||+++++..........| ..-+... ..... ....|+ .++..+++.+.+++ ...+.+..+++....
T Consensus 184 rS~VR~~lGi~~~G~~~~~~~lv~Dv~~~---~~~p~-~r~~~~~p~~~~~~~~~~~~~~~~-~~Ri~~~l~~~~d~~-- 256 (549)
T PRK08132 184 RSPLREMLGLEFKGRTFEDRFLIADVKMK---ADFPT-ERWFWFDPPFHPGQSVLLHRQPDN-VWRIDFQLGWDADPE-- 256 (549)
T ss_pred CCHHHHHCCCCCCCCCCCCEEEEEEEEEC---CCCCC-EEEEEECCCCCCCCEEEEEECCCC-EEEEEEECCCCCCHH--
T ss_conf 77358863998757765533799888852---78886-347996467799967999977998-799998638999844--
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHHHH
Q ss_conf 34553222389898632128022201100233210123346542101468711211111244830334201303679999
Q gi|254780168|r 227 FLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYAL 306 (380)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~L 306 (380)
.....+.+.+.+..+...-.. + .......|.+. ......|.+|||+|+|||||.|+|++|||||++|+||..|
T Consensus 257 ----~~~~~e~~~~~v~~~lg~~~~-~-ei~~~s~~~~~-~rvA~~~r~GRVfLaGDAAH~~pP~GGqGmNtGi~DA~NL 329 (549)
T PRK08132 257 ----AEKKPENVIPRVRALLGEDVE-F-ELEWISVYTFQ-CRRMDRFRHGRVLFAGDAAHQVSPFGARGANSGVQDADNL 329 (549)
T ss_pred ----HHCCHHHHHHHHHHHHCCCCC-C-CEEEEEEEEEE-EEEECCCCCCCEEEECCCCEECCCCCCCCCCCCCCCHHHH
T ss_conf ----516979999999997298888-5-26999972401-2770213468589832521234876665444342037789
Q ss_pred HHHH----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHC
Q ss_conf 9985----248989999999998679999999999998898367898-999999999851533377720
Q gi|254780168|r 307 SYLL----GKKTIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRP-ASLFRNAGLRLGIHKPLHKSL 370 (380)
Q Consensus 307 a~~L----~~~~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~~~-~~~~r~~~l~~~~~~~~~~~l 370 (380)
++.| +....+.+|+.|+.||++.+++++..+.....++....+ ...+|+..+++....+..+++
T Consensus 330 aWKLA~Vl~G~A~~~LLdTY~~ERrp~a~~~i~~s~~~~~~~~~~~~~~~~~r~~~~~~a~~~~~~r~~ 398 (549)
T PRK08132 330 AWKLALVLRGRAPDSLLDSYASEREFAADENIRNSTRSTDFITPKSPVSRLFRDAVLRLARDHPFARSL 398 (549)
T ss_pred HHHHHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 999999975888942216206551489999998766543022789767889999998775305567876
No 35
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase; InterPro: IPR011295 This entry represents the FAD-dependent monooxygenase responsible for the second hydroxylation step in the aerobic ubiquinone biosynthetic pathway . The sequences in this entry are restricted to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyses the final hydroxylation step. The enzyme has also been named VisB due to a mutant visible light sensitive phenotype..
Probab=100.00 E-value=0 Score=344.62 Aligned_cols=355 Identities=21% Similarity=0.268 Sum_probs=290.8
Q ss_pred CEECCHHHHHHHHHHHHHCC-----CEEEEEECCCC-----CCC--CCCEEEECHHHHHHHHHCC-----CHHHHHHC-C
Q ss_conf 38775389999999999779-----85999956876-----555--7713667888999999889-----94789862-6
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRG-----IQSCVLEKKDQ-----LSD--SGFGIQISPNASRILKRIG-----ILDQLEDI-W 62 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G-----~~v~i~Er~~~-----~~~--~g~gi~l~p~~~~~L~~lG-----i~~~~~~~-~ 62 (380)
||||||++|+++|++|++.+ ++|.|||++.. +.. .-+.++|++.|..+|++|| +|+.+... +
T Consensus 3 iIvGGGl~G~~lAlAL~~~~G~~~~~~i~l~E~~~~~~~~~~~~fkD~R~~AlS~GS~~~L~~lGllqPh~W~~l~~~ra 82 (425)
T TIGR01984 3 IIVGGGLVGLSLALALSRLSGREGKLKIALIEANSPSAAKQPGFFKDARSLALSYGSKQILEKLGLLQPHLWPKLAPFRA 82 (425)
T ss_pred EEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
T ss_conf 88856589999999985067755761589865657442468642356504687689999998538633125788601367
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCC------CC-------
Q ss_conf 88430699978854433345543234444782478620001347889973206872564210123------44-------
Q gi|254780168|r 63 IEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHIT------HP------- 129 (380)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~------~~------- 129 (380)
.++.++.+.+ .......++...++..+..| ++|...++.++|.+++.....+++....++. +.
T Consensus 83 tpI~~IhVSD-~g~fG~~~~~~~~~~~~aLG---yVV~~~~~~~~L~~~l~~~~~~~~~~P~~~~~i~~~~~~rveqlPr 158 (425)
T TIGR01984 83 TPIKDIHVSD-QGHFGATELRASEFGLPALG---YVVELADLGQALLKRLAKLRNIQLYCPARLKEIIREQDSRVEQLPR 158 (425)
T ss_pred CCCCEEEEEE-CCCEEEEEECHHHCCCCCCC---EEEEHHHHHHHHHHHHHHCCCCCEECCCCCCEEEECCCCCEECCCC
T ss_conf 8775168864-58300134125362876453---1421789999999998625665112575321121057863000566
Q ss_pred -------CCCCC-CCCC----CEEEEEEEEECC-----CCCCCHHHCCCCC--CCCCCCEEEEEECCCCCCCCCCCCCCE
Q ss_conf -------32112-3453----103568997436-----7663121128533--443110157860365446554566760
Q gi|254780168|r 130 -------DCTQI-SKIN----NQKPDLLVGADG-----LNSNIRHYIDTQP--ITFSGDVVLRCLIPQNNAPEFIDFQSV 190 (380)
Q Consensus 130 -------~~~~~-~~~~----~~~adlvIgADG-----~~S~vR~~l~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~ 190 (380)
..+.+ .++. +.+|+|||+||| .+|+||+.+.... .+...++++.+.|..+.. +.+..
T Consensus 159 adGS~A~~~~~lt~~~~rhP~~l~~~Lli~ADGGlfdd~~S~~r~~~~i~~~~~R~y~QtAlian~~~~~p----H~~~A 234 (425)
T TIGR01984 159 ADGSVAVVEVTLTDNEQRHPLQLQAKLLIAADGGLFDDANSKVRELLSIATEEHRDYEQTALIANVRVEQP----HQGCA 234 (425)
T ss_pred CCCCCEEEEEEEECCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCEEEEEEECCCCCC----CCCCE
T ss_conf 66551035788830887564055530889855863313567889963898178606200330123100357----57606
Q ss_pred EEEECCCCEEEEEEECCC-CEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHC-CCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 899765405788840489-7379999845774211123455322238989863212-80222011002332101233465
Q gi|254780168|r 191 NIFFGPDSHLVTYPLRED-NTINMVFVSSKHTLKDISFLKRSEIHKEWFVKHLTNW-HQEIIQLILQINDTHLYPLFECE 268 (380)
Q Consensus 191 ~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~l~~~~ 268 (380)
..-|.|.|+++++|+.++ ..++.||+.+++...... ...+++|+..+... ...-.+.+...++.+.|||..+.
T Consensus 235 ~ERFt~~GPlALLP~~d~q~~~slvWc~~~~~a~~~~-----~L~~~eFl~~Lq~~nFG~rlG~~~~~G~r~~yPL~l~~ 309 (425)
T TIGR01984 235 FERFTPHGPLALLPLKDNQYRLSLVWCLPKEQAERLA-----NLSDAEFLAELQQANFGWRLGKITQVGERKAYPLKLVI 309 (425)
T ss_pred EEEECCCCCEEECCCCCCCCCEEEEECCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 8444777780234678999723889718978999986-----68988999998651222542057432751004366786
Q ss_pred CCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 421014687112111112448303342013036799999985248-------9899999999986799999999999988
Q gi|254780168|r 269 CKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKK-------TIPAAISAYQKVRAVRVKRIRYRTKLNQ 341 (380)
Q Consensus 269 ~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~-------~~~~~l~~Y~~~R~~~~~~i~~~s~~~~ 341 (380)
.+...++||||||||||++||++|||.|+||+|+..|++.|..+ +-...|++|++.|+.+=..++..|....
T Consensus 310 -a~~~v~~R~vliGNAAqTlHPIAGQGfNLGlRDv~~L~~~l~~~~~~~~D~G~~~~L~~Y~~~R~~D~~~t~~lT~~L~ 388 (425)
T TIGR01984 310 -AEEQVSHRVVLIGNAAQTLHPIAGQGFNLGLRDVLTLAEVLIDAREQGKDLGEYALLQEYLRRRQFDRATTIGLTDGLV 388 (425)
T ss_pred -HHHCCCCCEEEEECCHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -2101467279986513333014553016328999999999886764368888978999999876877899988878777
Q ss_pred HHHCCCCH-HHHHHHHHHHHHCCCHHHHH
Q ss_conf 98367898-99999999985153337772
Q gi|254780168|r 342 LLFHMHRP-ASLFRNAGLRLGIHKPLHKS 369 (380)
Q Consensus 342 ~~~~~~~~-~~~~r~~~l~~~~~~~~~~~ 369 (380)
++|+++.+ .+..|+++|..+...|+.|.
T Consensus 389 ~~FsN~~~~l~~~R~LGL~~~~~~pplK~ 417 (425)
T TIGR01984 389 RLFSNQIPLLRALRNLGLLALENLPPLKK 417 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf 65200348999855589999730204689
No 36
>PRK06126 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=336.71 Aligned_cols=332 Identities=22% Similarity=0.251 Sum_probs=214.4
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCC---CCEEEEECCCCC
Q ss_conf 38775389999999999779859999568765557713667888999999889947898626884---306999788544
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDIWIEP---EDFVFRSGSTLK 77 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~---~~~~~~~~~~~~ 77 (380)
|||||||+||++|+.|+++|++|+|+||++.+...+++..++++++++|+.+|+++++.+.+.+. ..+.+.+...+.
T Consensus 11 lIVGaGPvGL~lA~~La~~Gi~v~viEr~~~~~~~~rA~~l~~rtlEil~~lGl~~~l~~~g~p~~~~~~~~~~~~~~g~ 90 (545)
T PRK06126 11 LIVGGGPVGLALALELGRRGVDSILVERGDGTAFNPKANATSARSMEHFRRLGIADEVRSAGLPADYPTDIAYFTRLTGY 90 (545)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEEEEECCCE
T ss_conf 99994989999999999879999998899998878858998889999999879889998507875346633688611766
Q ss_pred CCCCCCCCC-----------CCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC----CCCC--CC---CC
Q ss_conf 333455432-----------3444478247862000134788997320687256421012344----3211--23---45
Q gi|254780168|r 78 ELSRFSCKN-----------YSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP----DCTQ--IS---KI 137 (380)
Q Consensus 78 ~~~~~~~~~-----------~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~----~~~~--~~---~~ 137 (380)
.+.++.... ........+...|++..+.++|.+++.+.+++.++++++++.. +++. +. ++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Q~~lE~~L~~~~~~~~gv~v~~g~~~~~~~qd~~gV~~~~~~~~~g 170 (545)
T PRK06126 91 ELARITLPSAREAITPVGGPDGSWPSPELPHRIPQKYVEPILLEHAQAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGG 170 (545)
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHCCCCEEECCCEEEEEEECCCCEEEEEEECCCC
T ss_conf 88862167544334565445665566563356288999999999997489988980778999998389469999989999
Q ss_pred --CCEEEEEEEEECCCCCCCHHHCCCCCCCCCCC-EEEEEECCCCCCCCCCCCC--CEEEEECCCCEEEEEEECCCCEEE
Q ss_conf --31035689974367663121128533443110-1578603654465545667--608997654057888404897379
Q gi|254780168|r 138 --NNQKPDLLVGADGLNSNIRHYIDTQPITFSGD-VVLRCLIPQNNAPEFIDFQ--SVNIFFGPDSHLVTYPLREDNTIN 212 (380)
Q Consensus 138 --~~~~adlvIgADG~~S~vR~~l~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~ 212 (380)
.+++|+|||||||++|.||+++++........ ..+...+...+........ ....++.|++...+.++.+...+.
T Consensus 171 ~~~~i~A~ylVGaDGarS~VR~~lGI~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 250 (545)
T PRK06126 171 ESLTIRADYLVGCDGARSAVRKSLGISYEGTSGVQRMLSIYIRAPGLYALVPHDPAWMYWLFNPDRRGVLVAIDGRDEWL 250 (545)
T ss_pred CEEEEEEEEEEECCCCCCHHHHHCCCCCCCCCCCEEEEEEEEECCCHHHHCCCCCCEEEEEECCCCCEEEEEECCCCEEE
T ss_conf 48999877999747887377886498876776311589999966854640578872599997799867999955985799
Q ss_pred EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC-EEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCC
Q ss_conf 99984577421112345532223898986321280222-01100233210123346542101468711211111244830
Q gi|254780168|r 213 MVFVSSKHTLKDISFLKRSEIHKEWFVKHLTNWHQEII-QLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPF 291 (380)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~ 291 (380)
+....+.+.... .. .....+.+.+.+. .+.. ++ .....|... ....+.|.+|||+|+|||||.|+|+
T Consensus 251 ~~~~~~~~~~~~---~~-~~~~~~~~~~~~g---~~~~~~i----~~~~~w~~~-~~vA~~~r~gRVfLaGDAAH~~~P~ 318 (545)
T PRK06126 251 FHQLRPGEDEFD---IE-DVDARAFVRRGLG---EDIPYEV----LSVVPWVGR-RLVADSYRKGRVFLAGDAAHLFTPT 318 (545)
T ss_pred EEEECCCCCCCC---CC-HHHHHHHHHHHHC---CCCCEEE----EEEEEEEEE-EEEHHHCCCCCEEEECCCCCCCCCC
T ss_conf 998158886667---87-0899999999629---9874489----998887766-8882022579689701300125897
Q ss_pred HHHHHCCCHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33420130367999999852----489899999999986799999999999988983
Q gi|254780168|r 292 AAQGANMAIEDAYALSYLLG----KKTIPAAISAYQKVRAVRVKRIRYRTKLNQLLF 344 (380)
Q Consensus 292 ~GqG~n~al~Da~~La~~L~----~~~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~ 344 (380)
+|||||++|+||..|++.|. ....+.+|++|+.||+|.+.+++..+..+...+
T Consensus 319 gGqGmNtGi~DA~NLaWKLA~v~~G~a~~~LLdtY~~ERrpva~~~~~~~~~~~~~~ 375 (545)
T PRK06126 319 GGYGMNTGIGDAVNLGWKLAAVLNGWAGPALLDSYEAERRPIALRNTDYARENADAL 375 (545)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 665102228789989988988736878835503432230799999999999889875
No 37
>PRK06834 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-45 Score=331.65 Aligned_cols=337 Identities=16% Similarity=0.164 Sum_probs=219.9
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-CCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCC
Q ss_conf 38775389999999999779859999568765557-71366788899999988994789862688430699978854433
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDS-GFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKEL 79 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~-g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (380)
|||||||+||++|+.|+++|++|+|+||++.+... +++..++++++++|+++|+++++...+.......+..
T Consensus 7 lIVGaGPvGL~lA~~La~~Gi~v~viE~~~~~~~~~~RA~~l~~rt~eil~~~Gl~d~~~~~g~~~~~~~~~~------- 79 (488)
T PRK06834 7 VIAGGGPTGLMLAGELALAGVDVAIVERRVDQELVGSRAGGLHARTLEVLDQRGIVDRFLAEGQVAQVTGFAQ------- 79 (488)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCCCCCC-------
T ss_conf 9989388999999999976999999968999877698484778999999998799899984265211124012-------
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC----CC--CCCCCCCCEEEEEEEEECCCCC
Q ss_conf 34554323444478247862000134788997320687256421012344----32--1123453103568997436766
Q gi|254780168|r 80 SRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP----DC--TQISKINNQKPDLLVGADGLNS 153 (380)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~----~~--~~~~~~~~~~adlvIgADG~~S 153 (380)
..++..++. .. ......+++..+.++|.+.+.+.+ +.++++++++.. ++ +++.++++++|+|||||||++|
T Consensus 80 ~~~~~~~~p-~~-~~~~~~~~Q~~lE~iL~~~l~~~~-~~v~~g~~v~~~~~~~~gV~v~~~dg~ti~a~ylVGaDGa~S 156 (488)
T PRK06834 80 IRLDISDFP-TR-HNYGLALRQNHIERILAEWVGELG-VPIYRGREVTGFTQDDTGVDVELSDGSTLRAQYLVGCDGGRS 156 (488)
T ss_pred EECCHHHCC-CC-CCCEEEEEHHHHHHHHHHHHHHCC-CEEEECCEEEEEEECCCEEEEEECCCCEEEEEEEEEECCCCC
T ss_conf 025676587-77-783788548999999999998589-979808889999983996899988982798758997067674
Q ss_pred CCHHHCCCCCCCCCCC-EEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 3121128533443110-157860365446554566760899765405788840489737999984577421112345532
Q gi|254780168|r 154 NIRHYIDTQPITFSGD-VVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKRSE 232 (380)
Q Consensus 154 ~vR~~l~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (380)
.||++++++...+... ..+...+..... .....+..+.+...+.|...+..+.+++........ .+
T Consensus 157 ~VR~~lGI~~~G~~~~~~~~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 223 (488)
T PRK06834 157 LVRKAAGIEFPGWDATTSYLLAEVEMTEE------PPWGVRRDALGVHAFGRLEDEGPVRVVVTERQLGAA-------GE 223 (488)
T ss_pred HHHHHCCCCCCCCCCCEEEEEEEEECCCC------CCCEEECCCCCEEEEEECCCCCEEEEEEECCCCCCC-------CC
T ss_conf 67886499876787652799999981478------873021388735899731799559999726545545-------68
Q ss_pred CCHHHHHHHHHHCC-CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHHHHHHHH-
Q ss_conf 22389898632128-0222011002332101233465421014687112111112448303342013036799999985-
Q gi|254780168|r 233 IHKEWFVKHLTNWH-QEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLL- 310 (380)
Q Consensus 233 ~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L- 310 (380)
...+.+.+.+.... .+. . +........|++.. .....|.++||+|+|||||.|+|++|||||++|+||..|++.|
T Consensus 224 ~~~~~~~~~~~~~~g~~~-~-i~~~~~~s~f~~~~-r~A~~y~~gRVfLaGDAAH~~~P~gGqGmNtGi~DA~NLaWKLA 300 (488)
T PRK06834 224 PTLDDLREALIAVYGTDY-G-IHSPTWISRFTDMA-RQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLA 300 (488)
T ss_pred CCHHHHHHHHHHHHCCCC-C-EEEEEEEEECCCHH-EEECCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 988999999988638876-5-00256998704243-04032347857880350114797646521123778888999999
Q ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf ---24898999999999867999999999999889836789899999999985153
Q gi|254780168|r 311 ---GKKTIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRPASLFRNAGLRLGIH 363 (380)
Q Consensus 311 ---~~~~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~~~~~~~r~~~l~~~~~ 363 (380)
+....+.+|++|+.||+|.+.+++..+.....+..........|+.+..++..
T Consensus 301 ~vl~G~a~~~LLdsY~~ERrpva~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 356 (488)
T PRK06834 301 QVVKGTSPESLLDTYHAERHPVAARVLRNTMAQVALLRPDDRTEALRDIVAELLGM 356 (488)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 99759998088766188889999999998898765316883047789999988526
No 38
>PRK07190 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-45 Score=332.67 Aligned_cols=322 Identities=16% Similarity=0.180 Sum_probs=211.8
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 38775389999999999779859999568765557713667888999999889947898626884306999788544333
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELS 80 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
|||||||+||++|+.|+++|++|+|+||++.+...+++..++++++++|+.+|+++++.+.+.+.....++ .++..+.
T Consensus 9 lIVGaGPvGL~lA~~La~~Gv~v~VlEr~~~~~~~~RA~~l~~rtleil~~~Gl~d~l~~~g~~~~~~~~~--~~g~~~~ 86 (480)
T PRK07190 9 VIVGAGPVGLMCAYLGQRCGINTVIVDKSDGPLEVGRADALNARTLQLLELADLFDELYPLGKPCNTSSVW--ADGQFIS 86 (480)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEC--CCCEEEE
T ss_conf 99993889999999998879999999699999999867575689999999759789998517755412671--2885750
Q ss_pred CCCCC-CCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC----CC--CCCCCCCCEEEEEEEEECCCCC
Q ss_conf 45543-23444478247862000134788997320687256421012344----32--1123453103568997436766
Q gi|254780168|r 81 RFSCK-NYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP----DC--TQISKINNQKPDLLVGADGLNS 153 (380)
Q Consensus 81 ~~~~~-~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~----~~--~~~~~~~~~~adlvIgADG~~S 153 (380)
..... ..........+..+++..+.++|.+++.+. ++.++++++++.. ++ +++.++++++|+|||||||++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~Q~~~E~~L~~~~~~~-g~~v~~g~~v~~~~~~~~~v~~~l~~ge~i~a~ylVGcDGa~S 165 (480)
T PRK07190 87 RQSSWWEELEGCLHKHFLMLGQSYVEKLLDEKLKET-AAAVKRSTAIVNIEINEAGCLTTLANGERIQSRYVIGADGSRS 165 (480)
T ss_pred CCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHC-CCEEEECCEEEEEEECCCCEEEECCCCCEEEEEEEEEECCCCC
T ss_conf 246664335677778558518899999999999866-9979915289999985893599848998998888886067761
Q ss_pred CCHHHCCCCCCCCCCCEEEE---EECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCC
Q ss_conf 31211285334431101578---603654465545667608997654057888404897379999845774211123455
Q gi|254780168|r 154 NIRHYIDTQPITFSGDVVLR---CLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKR 230 (380)
Q Consensus 154 ~vR~~l~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (380)
.||++++++.........|. +.+.. +.+ .......+..+.+.+..+|..++ ...+......
T Consensus 166 ~VRk~lgI~f~~~~~~~~~~~~d~~~~~-~~p---~~~~~~~~~~~~~~~~~~p~~g~-~~r~~~~~~~----------- 229 (480)
T PRK07190 166 FVRNHFAIPFEIIRPQIIWAVIDGVIDT-DFP---KVPEIIVFQAETSDVAWIPREGE-IDRFYVRMDT----------- 229 (480)
T ss_pred HHHHHCCCCCCCCCCCEEEEEEEEEEEC-CCC---CCCCEEEEECCCCCEEEEECCCC-EEEEEEECCC-----------
T ss_conf 6788759885567665179999999815-899---99837999718987799967898-8789996676-----------
Q ss_pred CCCCHHHHHHHHHH-CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHHHHHHH
Q ss_conf 32223898986321-28022201100233210123346542101468711211111244830334201303679999998
Q gi|254780168|r 231 SEIHKEWFVKHLTN-WHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYL 309 (380)
Q Consensus 231 ~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~ 309 (380)
.+...++..+.+.. ..|.... +......+.|.+..+...+++.+|||+|+|||||.|+|++|||||++|+||..|++.
T Consensus 230 ~~~t~ee~~~~i~~~~~~~~~~-~~~i~w~s~~~~~~r~A~~yr~~GRVfLaGDAAH~~pP~GGqGmNtGiqDA~NLaWK 308 (480)
T PRK07190 230 KDFTLQEAMDKINHAVRPHSLN-FKDIVWFSQFSVKESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLADAFNLMWK 308 (480)
T ss_pred CCCCHHHHHHHHHHHHCCCCCC-CEEEEEEEEECHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 6599899999999873866566-115789974005550374543279489941143147986566201116778889999
Q ss_pred HC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 52----4898999999999867999999999999889
Q gi|254780168|r 310 LG----KKTIPAAISAYQKVRAVRVKRIRYRTKLNQL 342 (380)
Q Consensus 310 L~----~~~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~ 342 (380)
|. ....+..|++|+.||+|.++.+...+....+
T Consensus 309 LAavl~G~a~~~LLDsY~~ER~Pva~~~l~~s~~~~~ 345 (480)
T PRK07190 309 LHMVMHFGASKELLHSYEAERKPVAHGVIETSGELVR 345 (480)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999748998278766699889999999998899986
No 39
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=100.00 E-value=2.8e-45 Score=328.42 Aligned_cols=343 Identities=15% Similarity=0.186 Sum_probs=220.1
Q ss_pred CEECCHHHHHHHHHHHHH-CCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCC--C
Q ss_conf 387753899999999997-7985999956876555771366788899999988994789862688430699978854--4
Q gi|254780168|r 1 MIIGAGISGLTLAASLGH-RGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTL--K 77 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~-~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~--~ 77 (380)
|||||||+||++|+.|++ +|+++.|+||++.+...|++..++|+++++|+.+|+.+++.+.+.....+.++..... .
T Consensus 36 LIVGAGP~GL~lA~~Lar~~Gv~~~IIDk~~~~~~~~rA~gl~~RTlEil~~~Gla~~i~~~g~~~~~~~~w~~~~~~~~ 115 (634)
T PRK08294 36 LIVGCGPAGLILAAQLSQFPEITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILAEAYWINETAFWKPDPANPA 115 (634)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEECHHHHHHHHHCCCHHHHHHCCEECCEEEEECCCCCCCC
T ss_conf 99996589999999987137998899927999999988377778999999877985899852601443788557887776
Q ss_pred CCCCCC-CCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCC-EEEEEEECCCC----CC-----CCCCC--C----C--C
Q ss_conf 333455-4323444478247862000134788997320687-25642101234----43-----21123--4----5--3
Q gi|254780168|r 78 ELSRFS-CKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPL-ARLHLSTHITH----PD-----CTQIS--K----I--N 138 (380)
Q Consensus 78 ~~~~~~-~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~-~~~~~~~~v~~----~~-----~~~~~--~----~--~ 138 (380)
.+.+.. ..+........++..+++..+.++|.+.++..+. +...++++++. .+ .+++. + + .
T Consensus 116 ~i~r~~~~~~~~~~~s~~p~~~l~Q~~~e~~l~~~l~~~~~~v~~~~g~~~~~~~~d~~~~~pV~vtl~~~~~~~~g~~~ 195 (634)
T PRK08294 116 RIVRSGRVQDVEDGLSEFPHVILNQARVHDYFLDFMRNSPTRLEPDYGYEFVDLEVDEDGDYPVTVTLRRTDGEREGEEE 195 (634)
T ss_pred CEEECCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEECCCCCCCEEEEEEECCCCCCCCEE
T ss_conf 13555757777777677862754548899999999986587078654159988897578775359999726876678437
Q ss_pred CEEEEEEEEECCCCCCCHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCC-EEEEECCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 103568997436766312112853344311015786036544655456676-0899765405788840489737999984
Q gi|254780168|r 139 NQKPDLLVGADGLNSNIRHYIDTQPITFSGDVVLRCLIPQNNAPEFIDFQS-VNIFFGPDSHLVTYPLREDNTINMVFVS 217 (380)
Q Consensus 139 ~~~adlvIgADG~~S~vR~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 217 (380)
+++|+|||||||++|.||++++++....+....| ++++.....++.+... ..+...+.+.+++.|..++..+.+....
T Consensus 196 tvrA~YlVGcDGA~S~VRk~lGi~~~G~~~~~~w-~v~Dv~~~tdfPd~r~~~~i~~~~~g~~~~iPre~~~~~R~~i~l 274 (634)
T PRK08294 196 TVRAKYVVGCDGARSRVRKSIGRELHGDSANHAW-GVMDVLAVTDFPDIRLKCAIQSASGGSILLIPREGGYLVRLYVDL 274 (634)
T ss_pred EEEEEEEEECCCCCCHHHHHCCCCCCCCCCCCEE-EEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEEEC
T ss_conf 9996179876877632587649876588766336-999998536888753477786079962999977898699999976
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCC---------CCCCCEEECHHHCCCC
Q ss_conf 5774211123455322238989863212802220110023321012334654210---------1468711211111244
Q gi|254780168|r 218 SKHTLKDISFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHW---------HNKKNAVLIGDAAHTL 288 (380)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~---------~~~~rv~LiGDAAH~~ 288 (380)
..... + ......+...+.+.+.......+..-.+..+..++.|.+.++...++ +.++||+|+|||||.+
T Consensus 275 ~~~~~-~-~~~~~~~~t~e~~~~~~~~il~P~~l~~~~v~W~s~y~i~~RvA~~F~d~~~~~~~~r~gRVFLAGDAAH~h 352 (634)
T PRK08294 275 GEVPP-D-ERVAVRNTTVEEVIAKANRILHPYTLDVKEVAWWSVYEVGHRLTDRFDDVPAEERGTRLPRVFIAGDACHTH 352 (634)
T ss_pred CCCCC-C-CCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCEEHHHHCCCCHHHCCCCCCCEEEECCHHHCC
T ss_conf 76687-6-433200069999999999752856664147878774131323111222431000134347789935343137
Q ss_pred CCCHHHHHCCCHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 8303342013036799999985----248989999999998679999999999998898367
Q gi|254780168|r 289 LPFAAQGANMAIEDAYALSYLL----GKKTIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHM 346 (380)
Q Consensus 289 ~P~~GqG~n~al~Da~~La~~L----~~~~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~ 346 (380)
+|.+|||||.+|+||..|++.| +....+.+|++|+.||+|.++.++...+....+|..
T Consensus 353 sP~gGqGMNtgiqDA~NLgWKLA~Vl~G~A~~~LLdTYe~ERrpvA~~LI~fD~~~s~lf~~ 414 (634)
T PRK08294 353 SAKAGQGMNVSMQDGFNLGWKLAHVLSGRSPPELLQTYSAERQAIAQELIDFDREWSTMMAK 414 (634)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 86433441342200555565788987188984887768999999999999877999998446
No 40
>KOG2614 consensus
Probab=100.00 E-value=2.2e-44 Score=322.96 Aligned_cols=335 Identities=27% Similarity=0.360 Sum_probs=223.4
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 38775389999999999779859999568765557713667888999999889947898626884306999788544333
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELS 80 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
+|||||++||++|+.|+|+|++|.|||++..++..|++|.|.-+++++|+.+|+-+.+...+.+..+....++.+++...
T Consensus 6 vIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai~~~e~i~~~gip~~~~v~~~~~sg~~~~ 85 (420)
T KOG2614 6 VIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAIGLKEQIREQGIPLGGRVLIHGDSGKEVS 85 (420)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEEHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEECCCCCEEE
T ss_conf 99888389899999998758748998621465558841121442899998726189999716755652643147887567
Q ss_pred CCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCC----------CCCCCCCCCCCCEEEEEEEEECC
Q ss_conf 45543234444782478620001347889973206872564210123----------44321123453103568997436
Q gi|254780168|r 81 RFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHIT----------HPDCTQISKINNQKPDLLVGADG 150 (380)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~----------~~~~~~~~~~~~~~adlvIgADG 150 (380)
+++..+..+. ...++.|..+.+.|.++.+ .+++++++....+ ....+++.++.++++|++|||||
T Consensus 86 ~~~~~~~~~~----i~r~~~r~ll~~lL~~a~~-~~~ikf~~~~~~~~~~~~~~~~~~~~~v~l~~g~~~~~dlligCDG 160 (420)
T KOG2614 86 RILYGEPDEY----ILRINRRNLLQELLAEALP-TGTIKFHSNLSCTSKDVEIETLGKKLVVHLSDGTTVKGDLLIGCDG 160 (420)
T ss_pred ECCCCCCHHH----HHHHHHHHHHHHHHHHHCC-CCEEECCCCCCCCCCCCEEEECCCCCCEECCCCCEEEEEEEEECCC
T ss_conf 4015883577----7788899999999973168-8715512110011344231000344430127874787408997575
Q ss_pred CCCCCHHHCCCCCCCCCCCEEEEEEC--CCCCCC----CCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCC
Q ss_conf 76631211285334431101578603--654465----545667608997654057888404897379999845774211
Q gi|254780168|r 151 LNSNIRHYIDTQPITFSGDVVLRCLI--PQNNAP----EFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKD 224 (380)
Q Consensus 151 ~~S~vR~~l~~~~~~~~~~~~~~~~i--~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (380)
++|+||++++...++|+++.+|+++- +....+ .....+..+.|..+..+..+|. +...+.+...
T Consensus 161 a~S~Vr~~l~~~~p~~~~~~ayrg~~~~~~~~~~~~~vf~~~~~~~~~~~~~~~~~~~y~----------~~~k~~t~t~ 230 (420)
T KOG2614 161 AYSKVRKWLGFKEPRYDGSQAYRGLGFIPNGIPFGKKVFAIYGNGLHSWPRPGFHLIAYW----------FLDKSLTSTD 230 (420)
T ss_pred HHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCCCCCCEECCCCCEEEECCCCCCEEEEEE----------EECCCCCCCC
T ss_conf 288998873546876036787740012337887544400234881797556884389887----------4057744212
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCC--CCCCCCCCCCC----CCCCCCEEECHHHCCCCCCCHHHHHCC
Q ss_conf 123455322238989863212802220110023321--01233465421----014687112111112448303342013
Q gi|254780168|r 225 ISFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTH--LYPLFECECKH----WHNKKNAVLIGDAAHTLLPFAAQGANM 298 (380)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~~~~~~~----~~~~~rv~LiGDAAH~~~P~~GqG~n~ 298 (380)
.......+..++...+....|...+.++++.++... .-|+..+++-+ ...+++|+|+|||||+|.|+.|||+|+
T Consensus 231 ~~~~~e~~~l~~~~~~v~~~~~en~~d~i~~~~~e~i~~t~l~~r~p~~~i~~~~s~~~vvL~GDAaHaM~Pf~GQG~n~ 310 (420)
T KOG2614 231 FAPFDEPEKLKKTSLEVVDFFPENFPDIIELTGEESIVRTPLADRPPWPLISVKCSPGNVVLLGDAAHAMTPFLGQGGNC 310 (420)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCC
T ss_conf 46767777875648999887677689998756847766242331697672521168771899634313368766655432
Q ss_pred CHHHHHHHHHHHCCC-----------C--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 036799999985248-----------9--------899999999986799999999999988983678989
Q gi|254780168|r 299 AIEDAYALSYLLGKK-----------T--------IPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRPA 350 (380)
Q Consensus 299 al~Da~~La~~L~~~-----------~--------~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~~~~ 350 (380)
||||+.+|+++|.+. + ++.+...|..+|+.|.-++...+.+...+-+..+|.
T Consensus 311 a~ED~~VLa~~L~~~~~d~s~~~~~~s~~~e~~~~ie~a~~~Y~~~r~~r~~rl~~~~~l~gi~~~s~~~l 381 (420)
T KOG2614 311 AFEDCVVLAECLDEAINDVSLAGEEYSRENESHAIIELAMYSYKEERWRRLLRLKVDAYLVGILPQSFGPL 381 (420)
T ss_pred HHHHHHHHHHHHHHHCCCHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCH
T ss_conf 47889999999998603120056501105413678999999889988887764210201567515655513
No 41
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=100.00 E-value=1.5e-40 Score=296.69 Aligned_cols=346 Identities=18% Similarity=0.186 Sum_probs=212.7
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC--CCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCC
Q ss_conf 38775389999999999779859999568765--5577136678889999998899478986268843069997885443
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL--SDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKE 78 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~--~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~ 78 (380)
+||||||+||++|+.|+++|++|+|+||.+.. ....++..|.+.++++|+++|+.+++.+.+.+...+.+..+...
T Consensus 6 ~IVGaGP~GL~LA~lLar~GI~~vVlEr~~~~~v~~~~RA~~l~~~tlell~~~Gl~~rl~~~g~~~~g~~l~~~g~~-- 83 (392)
T PRK08243 6 AIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVLGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELAFDGRR-- 83 (392)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCEE--
T ss_conf 999977999999999997799889997689977678876531088999999985988789743773564399989977--
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCC---CCCC----CCC-CCCC--CEEEEEEEEE
Q ss_conf 3345543234444782478620001347889973206872564210123---4432----112-3453--1035689974
Q gi|254780168|r 79 LSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHIT---HPDC----TQI-SKIN--NQKPDLLVGA 148 (380)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~---~~~~----~~~-~~~~--~~~adlvIgA 148 (380)
.++++.... .+.......+..+.+.|.++....+. .++++++++ +.++ +++ .+|. +++|||||||
T Consensus 84 -~rid~~~l~---~g~~~~~y~Q~ev~~~L~~a~~~~g~-~i~~~~~~v~~~d~~~~~~~V~~~~dG~~~~l~a~yvVGc 158 (392)
T PRK08243 84 -HRIDLTELT---GGRSVTVYGQTEVTRDLMAAREAAGG-PIVFEASDVALHDFDGDRPYVTYTKDGETHRIDCDFIAGC 158 (392)
T ss_pred -EEECCCCCC---CCCCEEECCHHHHHHHHHHHHHHCCC-EEEEEEEEEEEEECCCCCEEEEEECCCCEEEEEEEEEEEC
T ss_conf -660554468---89610335818999999999997699-7999059999995699825999944993799998467516
Q ss_pred CCCCCCCHHHCCCCCC-CCCCC--EEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCE-EEEEEEECCCCCCC
Q ss_conf 3676631211285334-43110--15786036544655456676089976540578884048973-79999845774211
Q gi|254780168|r 149 DGLNSNIRHYIDTQPI-TFSGD--VVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNT-INMVFVSSKHTLKD 224 (380)
Q Consensus 149 DG~~S~vR~~l~~~~~-~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~ 224 (380)
||++|.+|+.++.... .|... ..|.+++. +.|.. ... .+|......|++.+.++... .+++.+.+.+...+
T Consensus 159 DG~~S~vR~~ip~~~~~~~~~~yp~~wlgila--d~pp~--~~e-liy~~~~~gfal~~~r~~~~~R~y~q~~~~~~~e~ 233 (392)
T PRK08243 159 DGFHGVSRQSIPADALREFERVYPFGWLGILA--DAPPV--SDE-LIYANHERGFALCSMRSPTRSRYYLQCPLDDKVED 233 (392)
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCEEEEEE--CCCCC--CCE-EEEEECCCCEEEEEECCCCCEEEEEEECCCCCCCC
T ss_conf 88987520111566650223430433045784--26998--760-69878798379997038980089998089998232
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCEEEEC--CCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHH
Q ss_conf 1234553222389898632128022201100--23321012334654210146871121111124483033420130367
Q gi|254780168|r 225 ISFLKRSEIHKEWFVKHLTNWHQEIIQLILQ--INDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIED 302 (380)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~D 302 (380)
+ ..+..-+++.+.+. +.....+.. ......+|+.. .+..+|..|||+|+|||||.|+|++|||+|+||+|
T Consensus 234 ~----~de~~~~eL~~rl~---~~~~~~l~~g~~~~~sv~~lrs-~vae~~r~GRvfLaGDAAHi~pP~GgqGmN~gi~D 305 (392)
T PRK08243 234 W----SDERFWDELRRRLP---ADDAERLVTGPSIEKSIAPLRS-FVAEPMQFGRLFLAGDAAHIVPPTGAKGLNLAASD 305 (392)
T ss_pred C----CHHHHHHHHHHHCC---CCCCCCEEECCEEEEEEEEHHH-HHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 7----74668999997517---3224400235534566620565-50086653889999610032784034467589999
Q ss_pred HHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CHH-HHHHHHHHHHHCCCHH
Q ss_conf 9999998524---89899999999986799999999999988983678---989-9999999985153337
Q gi|254780168|r 303 AYALSYLLGK---KTIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMH---RPA-SLFRNAGLRLGIHKPL 366 (380)
Q Consensus 303 a~~La~~L~~---~~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~---~~~-~~~r~~~l~~~~~~~~ 366 (380)
|..|++.|.. ...++.|+.|++....|+.+.+..|..+..++|.- .+. +.+...-|.-+..++.
T Consensus 306 A~nLawkLaa~l~~~~~~~ld~Ys~~~l~rvw~~~~fs~~~t~~~h~~~~~~~~~~~~~~~~l~~~~~s~~ 376 (392)
T PRK08243 306 VRYLSRALVEFYREGDTDGLDAYSATALARVWKAERFSWWMTSMLHRFPDDDPFDQRIQLAELDYVTSSRA 376 (392)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHEECCHH
T ss_conf 99999999999842986777787799999999999988999997346989984899999984611227899
No 42
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6; InterPro: IPR000689 Ubiquinone (Q) functions as an electron carrier in the respiratory chain in mitochondria. Q biosynthesis involves a series of enzymatic steps, which are catalysed by the enzymes COQ1-COQ8 in Saccharomyces cerevisiae. COQ6, or ubiquinone biosynthesis monooxygenase, is a flavin-dependent enzyme localised to the matrix side of the inner mitochondrial membrane that is required for one or more steps in Q biosynthesis , .; GO: 0004497 monooxygenase activity.
Probab=100.00 E-value=6.4e-41 Score=299.19 Aligned_cols=358 Identities=22% Similarity=0.319 Sum_probs=251.2
Q ss_pred CEECCHHHHHHHHHHHHH----CCCEEEEEEC--CCCCCC----------CCCEEEECHHHHHHHHHCCCHHHHHHCCC-
Q ss_conf 387753899999999997----7985999956--876555----------77136678889999998899478986268-
Q gi|254780168|r 1 MIIGAGISGLTLAASLGH----RGIQSCVLEK--KDQLSD----------SGFGIQISPNASRILKRIGILDQLEDIWI- 63 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~----~G~~v~i~Er--~~~~~~----------~g~gi~l~p~~~~~L~~lGi~~~~~~~~~- 63 (380)
|||||||+|+++|++|+. +..+|+|+|. .+..+. ..|=.+++|++..+|+.+|.||.+...-+
T Consensus 4 vIvGGG~VG~alAaaL~~~~~~~dlkv~Lld~~d~p~l~s~~y~~~~~~y~NRvssitp~si~~f~~~GAWd~i~~~R~~ 83 (481)
T TIGR01989 4 VIVGGGLVGLALAAALGNNPLLKDLKVLLLDAVDAPKLKSRKYEKPDGPYSNRVSSITPASIEFFKKIGAWDHIESDRIK 83 (481)
T ss_pred EEECCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHCCHHHHHHHHHHH
T ss_conf 98888578999999973187320230678652348234211015788887763585375079998534835898851142
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCC--CEEEEEEECCCC-------------
Q ss_conf 84306999788544333455432344447824786200013478899732068--725642101234-------------
Q gi|254780168|r 64 EPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQP--LARLHLSTHITH------------- 128 (380)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~--~~~~~~~~~v~~------------- 128 (380)
+..++...++.+.. ..++.-.+.. .....+|+..-+...|.+++.+.. ++++....++..
T Consensus 84 ~f~~~~V~D~~s~a-~i~f~~~~~~----e~~aciiEN~~i~~sL~~~l~~~~~~~~~~~~~~~~~~~~ip~~srqaPtr 158 (481)
T TIGR01989 84 PFKRMQVWDGCSKA-LIEFDRDNVK----EDMACIIENDVIQASLYNRLKEYKSDNVKVLYKAKLISVTIPKKSRQAPTR 158 (481)
T ss_pred HHCCEEEEEECCCE-EEEECCCCCC----CCCEEHHHHHHHHHHHHHHHHHHCCCCEEECCHHCEEEECCCCCCCCCCCC
T ss_conf 01718988724740-3444236888----643011356899999999998725882331001010231155101457530
Q ss_pred -----------C-----CCCCCCCC---------------CCEEEEEEEEECCCCCCCHHHCCCCCCCCCC-CEEEEEEC
Q ss_conf -----------4-----32112345---------------3103568997436766312112853344311-01578603
Q gi|254780168|r 129 -----------P-----DCTQISKI---------------NNQKPDLLVGADGLNSNIRHYIDTQPITFSG-DVVLRCLI 176 (380)
Q Consensus 129 -----------~-----~~~~~~~~---------------~~~~adlvIgADG~~S~vR~~l~~~~~~~~~-~~~~~~~i 176 (380)
. ..++++|| ++..++|||||||.||.||+..+++...+.+ +.+..+++
T Consensus 159 eaissG~p~~~~~~~~~~~i~L~dGdvietsllvrinflk~~l~~~LliGADG~NS~VR~~~~i~~~gwNY~~~avVatl 238 (481)
T TIGR01989 159 EAISSGSPFEENDNSNWVHITLSDGDVIETSLLVRINFLKETLKTKLLIGADGVNSKVRKAANIDVTGWNYDQSAVVATL 238 (481)
T ss_pred HHHCCCCCCCCCCCCCCCEEEECCCCEEHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCEEECCCCCCCCCCCCEEEEEE
T ss_conf 12116888765566764257706886631455556555432000335774327877223362367545335764268888
Q ss_pred CCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH-HHC----------
Q ss_conf 654465545667608997654057888404897379999845774211123455322238989863-212----------
Q gi|254780168|r 177 PQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKRSEIHKEWFVKHL-TNW---------- 245 (380)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------- 245 (380)
..+.. .........-|.|.|+++++|+++ +..++||.++++.......+...+..+ .+.+.| -+|
T Consensus 239 ~l~~~--~~~n~~AWQRFLP~GPiAlLPl~D-~~s~lVWSts~e~a~~L~~Lp~e~FV~-~lN~Af~l~~~d~~~~~~~d 314 (481)
T TIGR01989 239 KLEED--ATENEVAWQRFLPTGPIALLPLSD-NLSTLVWSTSPEEAKRLKSLPPEEFVD-ALNAAFRLDYSDLNYLYLVD 314 (481)
T ss_pred EECCC--CCCCCEEEECCCCCCCEEECCCCC-CCCCCEEECCHHHHHHHCCCCCHHHHH-HHHHHHCCCCCCCCCCCCCC
T ss_conf 50567--888873541337876624457665-336541216779999842588357899-99987417888887311000
Q ss_pred -----------------------------------CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCC
Q ss_conf -----------------------------------802220110023321012334654210146871121111124483
Q gi|254780168|r 246 -----------------------------------HQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLP 290 (380)
Q Consensus 246 -----------------------------------~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P 290 (380)
+|.+-+++. +.+..|||--. -.+.+...||+|||||||.|||
T Consensus 315 ~~Gsm~~~~L~~~~~~~~~~~yatL~~~~~~~~~~PP~v~~v~~--ksRa~FPL~L~-Ha~~Yv~~R~ALvGDAAH~vHP 391 (481)
T TIGR01989 315 EAGSMDVEKLNEDIGFRTEEIYATLKVGRKSEVQVPPRVIGVVD--KSRAAFPLGLG-HADEYVTERVALVGDAAHRVHP 391 (481)
T ss_pred CCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCEECCCEEEEEEC--CCCCCCCCCCC-CCHHHHCCCCCEECCHHHCCCC
T ss_conf 22562089999741353014201110353134016885899823--75036874212-2077752896262230106787
Q ss_pred CHHHHHCCCHHHHHHHHHHHCC-----CCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHC
Q ss_conf 0334201303679999998524-----898--99999999986799999999999988983678-989999999998515
Q gi|254780168|r 291 FAAQGANMAIEDAYALSYLLGK-----KTI--PAAISAYQKVRAVRVKRIRYRTKLNQLLFHMH-RPASLFRNAGLRLGI 362 (380)
Q Consensus 291 ~~GqG~n~al~Da~~La~~L~~-----~~~--~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~-~~~~~~r~~~l~~~~ 362 (380)
.+|||.|||+.|+..|+..|+. .++ -.-|+.|+++|...-..+........++|+.+ +|.-.+|-++|.+.+
T Consensus 392 LAGQGvNlG~~Dv~~L~~~L~~a~~~G~DiGs~~~L~~Y~~~r~~~N~~~l~~~D~l~kLY~t~~ppvv~lRt~GL~l~~ 471 (481)
T TIGR01989 392 LAGQGVNLGFSDVESLVKALSKAVKEGADIGSVSSLKPYERERQAKNVVLLALVDKLHKLYATDFPPVVALRTLGLNLTN 471 (481)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
T ss_conf 33451011178999999999999860555241452058898786628510223544544010246579999999988640
Q ss_pred CCHHHHHC
Q ss_conf 33377720
Q gi|254780168|r 363 HKPLHKSL 370 (380)
Q Consensus 363 ~~~~~~~l 370 (380)
..+..|.+
T Consensus 472 ~~~PlKn~ 479 (481)
T TIGR01989 472 KISPLKNF 479 (481)
T ss_pred CCCCHHHH
T ss_conf 36511222
No 43
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=100.00 E-value=8.9e-38 Score=277.62 Aligned_cols=349 Identities=21% Similarity=0.276 Sum_probs=235.3
Q ss_pred CEECCHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCC--CHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 3877538999999999977--9859999568765557713667888999999889--94789862688430699978854
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHR--GIQSCVLEKKDQLSDSGFGIQISPNASRILKRIG--ILDQLEDIWIEPEDFVFRSGSTL 76 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~--G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lG--i~~~~~~~~~~~~~~~~~~~~~~ 76 (380)
+||||||+||.+|+.++++ +++|+|+||++.-.+.|.|+.++..++..|+..+ ..+.+.+.-...+++.++...
T Consensus 4 ~~iGGGPaGLYfailmK~~~P~~eI~V~ErN~~~dTfGwGVVfsD~tL~~l~~~Dp~s~~~i~~~f~~Wddi~v~~~g-- 81 (770)
T PRK08255 4 VCIGGGPAGLYFGLLMKLRDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIEVHFKG-- 81 (770)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEECCHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECC--
T ss_conf 997787589999999986589997479842799995244687472666455543999999999974786366999689--
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCCH
Q ss_conf 43334554323444478247862000134788997320687256421012344321123453103568997436766312
Q gi|254780168|r 77 KELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHPDCTQISKINNQKPDLLVGADGLNSNIR 156 (380)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~adlvIgADG~~S~vR 156 (380)
..+ ...|..+..|.|..|.++|.++|++.++ ++++.+++.+.+... ....+||||||||+||+||
T Consensus 82 ~~~----------~~~GhgF~gi~R~~LL~iLq~Ra~~lGV-~l~fe~~i~~~~~~~----~~~daDLVVaaDG~NS~vR 146 (770)
T PRK08255 82 RRI----------RSGGHGFAGIGRKRLLNILQARCEELGV-KLVFETEVPDDQAFA----LQYDADLVIASDGLNSRIR 146 (770)
T ss_pred EEE----------EECCCEEEHHHHHHHHHHHHHHHHHCCC-EEEECCCCCCCCHHH----HCCCCCEEEECCCCCHHHH
T ss_conf 079----------9669606647499999999999998398-489326379721011----1047898998787167998
Q ss_pred HHCC----CCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEE--CCCCEEE--EEEECCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 1128----5334431101578603654465545667608997--6540578--884048973799998457742111234
Q gi|254780168|r 157 HYID----TQPITFSGDVVLRCLIPQNNAPEFIDFQSVNIFF--GPDSHLV--TYPLREDNTINMVFVSSKHTLKDISFL 228 (380)
Q Consensus 157 ~~l~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~ 228 (380)
.... .+...-.+.++|-|.-...+ .++..| .++|.+. .||..++... |+.-++++.+......
T Consensus 147 ~~~~~~F~p~i~~~~n~fiWlGT~~~Fd--------aftf~F~~T~hG~~~aHaY~y~~~~ST-fIVE~~~~tw~~~G~d 217 (770)
T PRK08255 147 SRYADTFQPDIDTRRCRFVWLGTHKLFD--------AFTFAFEETEHGWFQAHAYRFDDDTST-FIVETPEEVWRAAGFD 217 (770)
T ss_pred HHHHHHCCCCCCCCCCCEEEECCCCCCC--------CCCEEEECCCCEEEEEEEEEECCCCEE-EEEECCHHHHHHHCCC
T ss_conf 8657761896144677649706686565--------444002207975699997543799628-9998788999871764
Q ss_pred CCC-CCCHHHHHHHHHHCCCCCCEEEECCCC--CCCCCCCCCCCCCCCCCCC----EEECHHHCCCCCCCHHHHHCCCHH
Q ss_conf 553-222389898632128022201100233--2101233465421014687----112111112448303342013036
Q gi|254780168|r 229 KRS-EIHKEWFVKHLTNWHQEIIQLILQIND--THLYPLFECECKHWHNKKN----AVLIGDAAHTLLPFAAQGANMAIE 301 (380)
Q Consensus 229 ~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~l~~~~~~~~~~~~r----v~LiGDAAH~~~P~~GqG~n~al~ 301 (380)
... +...+.+.+.|.+.. .-..++.+... .+.|--+.+.....|+++| |||+|||||+.|+..|+|..+|||
T Consensus 218 ~~s~~es~a~ce~iFa~~L-~Gh~Li~N~~~~rgs~W~~Fp~v~~~~W~h~n~~~~vVLlGDAahTAHFSIGSGTkLAmE 296 (770)
T PRK08255 218 EMSQEESIAFCEKLFADYL-DGHPLMSNASHLRGSAWINFPRVICERWVHWNRRVPVVLMGDAAHTAHFSIGSGTKLALE 296 (770)
T ss_pred CCCHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCEECCEEECCCEEECCCCCCEEEEECHHHHCCCCCCCCHHHHHH
T ss_conf 4797889999999999865-998133466667776332578363152232588776799603175338667762477899
Q ss_pred HHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHH--HHCCCHHH-HHC
Q ss_conf 79999998524--898999999999867999999999999889836------78989999999998--51533377-720
Q gi|254780168|r 302 DAYALSYLLGK--KTIPAAISAYQKVRAVRVKRIRYRTKLNQLLFH------MHRPASLFRNAGLR--LGIHKPLH-KSL 370 (380)
Q Consensus 302 Da~~La~~L~~--~~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~------~~~~~~~~r~~~l~--~~~~~~~~-~~l 370 (380)
||+.|+++|.. .+++++|+.||++|++.+.++|.+++.....|. .-.|.++..+++.| .+.++.+. +.-
T Consensus 297 DAIaLa~~l~~~~~~~~~Al~~Ye~~Rr~~v~~~Q~AA~~S~~WfE~~~ry~~l~p~qfays~ltRs~rithenLr~Rd~ 376 (770)
T PRK08255 297 DAIELARCLHEHPGDLPAALAAYEEERRVEVLRIQNAARNSTEWFENVERYADLEPEQFAYSLLTRSQRISHENLRLRDA 376 (770)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHCH
T ss_conf 99999999987699889999999986058899999999999999986887728998998899886157655477765368
Q ss_pred CHHHCC
Q ss_conf 437589
Q gi|254780168|r 371 DWIYQY 376 (380)
Q Consensus 371 ~wl~~~ 376 (380)
.|+-++
T Consensus 377 ~~~~~~ 382 (770)
T PRK08255 377 AWLEGY 382 (770)
T ss_pred HHHHHH
T ss_conf 999999
No 44
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase; InterPro: IPR012733 4-hydroxybenzoate 3-monooxygenase is a flavoprotein that converts its substrate to 3,4-dihydroxybenzoate, which subsequently enters the beta-ketioadipate pathway of aromatic degradation, using molecular oxygen and NADPH as shown below . 4-hydroxybenzoate + NADPH + O(2) = 3,4-dihydroxybenzoate + NADP(+) + H(2)O 4-hydroxybenzoate is an intermediate in the degradation of lignin and other aromatic plant compounds, and this enzyme is found extensively in soil bacteria. This enzyme is a homodimer where each subunit is composed of three distinct domains: an N-terminal flavin-binding domain with a beta-alpha-beta fold, a small substrate-binding domain composed of a single alpha helix and beta-sheet, and a C-terminal helical domain . The active site is found at the interface of all three domains. Catalysis occurs by a two-step reaction. In the first step, flavin is reduced by NADPH. Subsequently, the reduced flavin is oxygenated to a hydroperoxide which transfers the hydroxyl group to the substrate, forming 3,4-dihydroxybenzoate.; GO: 0018659 4-hydroxybenzoate 3-monooxygenase activity, 0050660 FAD binding, 0043639 benzoate catabolic process.
Probab=99.97 E-value=7.9e-31 Score=229.94 Aligned_cols=323 Identities=20% Similarity=0.254 Sum_probs=226.4
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCC---CCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCC
Q ss_conf 877538999999999977985999956876---55577136678889999998899478986268843069997885443
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQ---LSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKE 78 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~---~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~ 78 (380)
||||||+||.|..+|.++|++..|+||.+. ..++-+|| |-.-.++.|+++|+.+++...+..++++++.......
T Consensus 7 IiG~GPsGLLLGQLLh~~GId~viLEr~~~dYVlgRIRAGv-LE~g~v~LL~~agv~~Rm~~eG~~H~G~~ia~~g~~~- 84 (393)
T TIGR02360 7 IIGAGPSGLLLGQLLHKAGIDTVILERKSRDYVLGRIRAGV-LEQGTVDLLREAGVDERMDREGLVHEGIEIAFDGQRF- 84 (393)
T ss_pred EECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEE-
T ss_conf 97577357899999986698589972357223433210123-5789999998722322345358732565450178242-
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCC------CC---CCCCC-CCC--CEEEEEEE
Q ss_conf 33455432344447824786200013478899732068725642101234------43---21123-453--10356899
Q gi|254780168|r 79 LSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITH------PD---CTQIS-KIN--NQKPDLLV 146 (380)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~------~~---~~~~~-~~~--~~~adlvI 146 (380)
++++..... |....+--+.++-+=|.++-+..+...++....|.- .. .+++. ||+ +++||++.
T Consensus 85 --riDl~~~tG---G~~V~VYGQTEvtrDL~~ARe~~G~~~v~~a~~V~~HD~~~~~P~gc~VT~~~dG~~~~~dCDfIA 159 (393)
T TIGR02360 85 --RIDLKALTG---GKTVMVYGQTEVTRDLYEAREQAGLKTVYDADDVRLHDLAGDRPEGCHVTFERDGEEHRIDCDFIA 159 (393)
T ss_pred --ECCHHHHCC---CCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEEE
T ss_conf --000766058---978999766157788999998638955641143211265678889525877787917776402675
Q ss_pred EECCCCCCCHHHCCCCCC-CCCCC--EEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCC-EEEEEEEECCCCC
Q ss_conf 743676631211285334-43110--1578603654465545667608997654057888404897-3799998457742
Q gi|254780168|r 147 GADGLNSNIRHYIDTQPI-TFSGD--VVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDN-TINMVFVSSKHTL 222 (380)
Q Consensus 147 gADG~~S~vR~~l~~~~~-~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~ 222 (380)
||||-|...|+.++.+.. +|.-. ..|-|++... |+ ...+ .+|....+.|++-.++... +.+++-+.-.+..
T Consensus 160 GCDGFHGvSR~siP~~~~k~fErVYPFGWLGiLset--PP-v~~E--LIY~~h~RGFALCSmRS~~rSRYY~Q~pL~D~v 234 (393)
T TIGR02360 160 GCDGFHGVSRASIPAEVLKEFERVYPFGWLGILSET--PP-VSHE--LIYSNHERGFALCSMRSETRSRYYVQVPLTDKV 234 (393)
T ss_pred CCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHCCC--CC-CCCC--CCCCCCCCCHHHHHHCCCCCCCEEEEECCCCCC
T ss_conf 278886865445651241112450676200120578--68-8644--410367630245532036567358871456887
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHC-CCCCCEEEECCC--CCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCC
Q ss_conf 11123455322238989863212-802220110023--321012334654210146871121111124483033420130
Q gi|254780168|r 223 KDISFLKRSEIHKEWFVKHLTNW-HQEIIQLILQIN--DTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMA 299 (380)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~--~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~a 299 (380)
++++. +.|-+.++.. .+++.+.+-..+ +-++=||..- +..++..||++|.|||||.+||+++.|+|+|
T Consensus 235 edWSD--------d~FW~ELK~Rlp~e~A~~LvTGPSiEKSIAPLRSF-V~EPM~yGrLFLaGDAAHIVPPTGAKGLN~A 305 (393)
T TIGR02360 235 EDWSD--------DRFWEELKRRLPEEAAERLVTGPSIEKSIAPLRSF-VAEPMRYGRLFLAGDAAHIVPPTGAKGLNLA 305 (393)
T ss_pred CCCCH--------HHHHHHHHHCCCHHHHHHCCCCCCCHHHCCCCCCC-CCCCCCCCCHHHHCCCCCCCCCCCCCHHHHH
T ss_conf 78870--------77899986137866875405676412211678774-3386524651110464435888762210348
Q ss_pred HHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 3679999998524---898999999999867999999999999889836
Q gi|254780168|r 300 IEDAYALSYLLGK---KTIPAAISAYQKVRAVRVKRIRYRTKLNQLLFH 345 (380)
Q Consensus 300 l~Da~~La~~L~~---~~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~ 345 (380)
-.|+..|.+.|.+ ....+.++.|++.-.-|+.+.++.|-.+..+.|
T Consensus 306 ASD~~yL~~aL~~~Y~~~~~~gi~~YSa~aLaRvWKA~RFSWWmT~lLH 354 (393)
T TIGR02360 306 ASDVHYLYEALLEHYQEGDSAGIDGYSAKALARVWKAERFSWWMTSLLH 354 (393)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCEE
T ss_conf 8899999999999730221657788999996333220043346658310
No 45
>PRK11445 putative oxidoreductase; Provisional
Probab=99.96 E-value=2.4e-26 Score=199.14 Aligned_cols=289 Identities=20% Similarity=0.226 Sum_probs=157.1
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC----CCCCCEEEECHHHHHHHHHCCCH--HHHHHCCCCCCCEEEEECC
Q ss_conf 38775389999999999779859999568765----55771366788899999988994--7898626884306999788
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL----SDSGFGIQISPNASRILKRIGIL--DQLEDIWIEPEDFVFRSGS 74 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~----~~~g~gi~l~p~~~~~L~~lGi~--~~~~~~~~~~~~~~~~~~~ 74 (380)
+||||||+|+++|..|+++ ++|+++||+..+ +...+|-.|+|++++.|..+++. +++. ..+.-.....-+
T Consensus 5 vVVGgGPAGstaA~~La~~-~~Vllldk~~~~~~~pr~KpCGG~I~~~a~~~l~~~~~~ip~~~l---~~~~i~~~~~~~ 80 (348)
T PRK11445 5 AIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVI---ANPQIFAVKTID 80 (348)
T ss_pred EEECCCHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHC---CCCEEEEEEECC
T ss_conf 9989788999999998268-988999813565679998878687197289998750678856650---155378766427
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEE-EECCCC-CCCCCC---CCCC--CEEEEEEEE
Q ss_conf 544333455432344447824786200013478899732068725642-101234-432112---3453--103568997
Q gi|254780168|r 75 TLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHL-STHITH-PDCTQI---SKIN--NQKPDLLVG 147 (380)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~-~~~v~~-~~~~~~---~~~~--~~~adlvIg 147 (380)
............+..++|..|+++|++.+++........ ...++. .++.++ .+++ +.++++|||
T Consensus 81 ---------~~~~~~~~~~~~yi~~~R~~fD~~L~~~a~~~~~~~~~~~~~~i~~~~~g~~v~~~~~g~~~~~~a~~iIG 151 (348)
T PRK11445 81 ---------LANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVG 151 (348)
T ss_pred ---------CCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCEEEEEEEECCEEEEEEECEEEE
T ss_conf ---------87752213566076055999999999988728738971489999983980799997189078987378998
Q ss_pred ECCCCCCCHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEC---CCCEEEEEEECCCCEEEEEEEECCCCCCC
Q ss_conf 436766312112853344311015786036544655456676089976---54057888404897379999845774211
Q gi|254780168|r 148 ADGLNSNIRHYIDTQPITFSGDVVLRCLIPQNNAPEFIDFQSVNIFFG---PDSHLVTYPLREDNTINMVFVSSKHTLKD 224 (380)
Q Consensus 148 ADG~~S~vR~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (380)
|||+||+||+++..... .....++...+.... +.+....++. ++++.++||- ++.+++....+.....
T Consensus 152 ADGanS~Vrr~l~~~~~-~~~~ia~~~~~~~~~-----~~~~~~~~~d~~~~~~Y~WvFPk--~~~~~vG~~~~~~~~~- 222 (348)
T PRK11445 152 ADGANSMVRRHLYPDHQ-IRKYVAIQQWFAEKH-----PVPFYSCIFDNEITDCYSWSISK--DGYFIFGGAYPMKNGR- 222 (348)
T ss_pred CCCCCCHHHHHHCCCCC-CCEEEEEEEEECCCC-----CCCCEEEEECCCCCCEEEEEEEC--CCEEEEEEEEECCCHH-
T ss_conf 98977588776354456-652789998852777-----77635799658747659999977--9839997887545579-
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCC-CCCCCCC-CCCCCEEECHHHCCCCCCCHHHHHCCCHHH
Q ss_conf 12345532223898986321280222011002332101233-4654210-146871121111124483033420130367
Q gi|254780168|r 225 ISFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLF-ECECKHW-HNKKNAVLIGDAAHTLLPFAAQGANMAIED 302 (380)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~-~~~~~~~-~~~~rv~LiGDAAH~~~P~~GqG~n~al~D 302 (380)
...+.+.+.+....-...+.+.. ...++. .....++ ..++||+|+||||+.+.|++|+|+..||..
T Consensus 223 --------~~~~~~~~~l~~~g~~~~~~i~~----e~~~i~~P~~~~~~~~g~~~v~LvGDAAG~V~P~sGEGIyyAm~S 290 (348)
T PRK11445 223 --------ERFETLKEKLSAFGFQFGKAVKT----EACTVLRPSRWQDFVCGKDNAFLIGEAAGFISASSLEGISYALDS 290 (348)
T ss_pred --------HHHHHHHHHHHHHCCCCCCEEEE----CCCCCCCCCCCCCCCCCCCCEEEEEEHHCCCCCCCCCCHHHHHHH
T ss_conf --------99999999998606545866664----165367887643342488999999812024585451219999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 9999998524898999999999
Q gi|254780168|r 303 AYALSYLLGKKTIPAAISAYQK 324 (380)
Q Consensus 303 a~~La~~L~~~~~~~~l~~Y~~ 324 (380)
+..+|+.+.+. ...-++.|.+
T Consensus 291 GrlaAeaI~~~-~~~~~~~~~~ 311 (348)
T PRK11445 291 ARILREVLNKQ-PEKLNTAYWR 311 (348)
T ss_pred HHHHHHHHHHH-HHCCHHHHHH
T ss_conf 99999999987-7551456778
No 46
>KOG3855 consensus
Probab=99.96 E-value=3.7e-28 Score=211.64 Aligned_cols=358 Identities=20% Similarity=0.257 Sum_probs=225.6
Q ss_pred CEECCHHHHHHHHHHHHHC----CCEEEEEECC--CCCCCC-------CCEEEECHHHHHHHHHCCCHHHHHHC-CCCCC
Q ss_conf 3877538999999999977----9859999568--765557-------71366788899999988994789862-68843
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHR----GIQSCVLEKK--DQLSDS-------GFGIQISPNASRILKRIGILDQLEDI-WIEPE 66 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~----G~~v~i~Er~--~~~~~~-------g~gi~l~p~~~~~L~~lGi~~~~~~~-~~~~~ 66 (380)
|||||||+|+++|..|..+ ..+|.++|-. +.+.+. .+=..++|++...++.+|.||.+... .-+..
T Consensus 40 vIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~R~~~~~ 119 (481)
T KOG3855 40 VIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHDRYQKFS 119 (481)
T ss_pred EEECCCHHHHHHHHHHCCCCCCCHHEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHCCHHHHHHHHCCCCCC
T ss_conf 99888447789999862498500001467742467532456667652350312785247988734778776564056202
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHH--HHHHCCCEEEEEEECCCCC---------C-----
Q ss_conf 06999788544333455432344447824786200013478899--7320687256421012344---------3-----
Q gi|254780168|r 67 DFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLN--HIQTQPLARLHLSTHITHP---------D----- 130 (380)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~--~~~~~~~~~~~~~~~v~~~---------~----- 130 (380)
++...++.+...+ .+.-.....+ ....|+..-++..|.. ...+..++++....++.+. +
T Consensus 120 ~~~v~Ds~s~a~I-~~~~d~~~~d----~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~ 194 (481)
T KOG3855 120 RMLVWDSCSAALI-LFDHDNVGID----MAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGMWF 194 (481)
T ss_pred CEEEECCCCHHHH-HHCCCCCCCC----CEEEEEHHHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCCCCCCCCEE
T ss_conf 4355414125563-1145556665----2036643477998888777641476243114532320123456789986537
Q ss_pred CCCCCCCCCEEEEEEEEECCCCCCCHHHCCCCCCCCC-CCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCC
Q ss_conf 2112345310356899743676631211285334431-101578603654465545667608997654057888404897
Q gi|254780168|r 131 CTQISKINNQKPDLLVGADGLNSNIRHYIDTQPITFS-GDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDN 209 (380)
Q Consensus 131 ~~~~~~~~~~~adlvIgADG~~S~vR~~l~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 209 (380)
....+++.....||||||||.||.||+..+.+...+. .+.+..+.+..+.. .......++. |.|.|+++.+|..++
T Consensus 195 ~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~-~~~~~~AwQR-FlP~GpiAllpl~d~- 271 (481)
T KOG3855 195 HITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEE-AILNGVAWQR-FLPTGPIALLPLSDT- 271 (481)
T ss_pred EEEECCCCEEEECEEECCCCCCCHHHHHCCCCCCCCCCCCEEEEEEEEECCC-CCCCCHHHHH-CCCCCCEEECCCCCC-
T ss_conf 8993268454410040454555121321278755432100246678870233-5664146775-479886052466655-
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHC------------------------------------CCCCCEEE
Q ss_conf 379999845774211123455322238989863212------------------------------------80222011
Q gi|254780168|r 210 TINMVFVSSKHTLKDISFLKRSEIHKEWFVKHLTNW------------------------------------HQEIIQLI 253 (380)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~i 253 (380)
..+++|...++............ -.+.+...|..- .|.+.+..
T Consensus 272 ~s~LvWSts~~~a~~L~~lp~e~-fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~~~~q~pp~V~~v~ 350 (481)
T KOG3855 272 LSSLVWSTSPENASILKSLPEER-FVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRLANQQYPPSVFEVG 350 (481)
T ss_pred CCCCEEECCHHHHHHHHCCCCHH-HHHHHHHHHHCCCCCCHHHHCHHHHHCCHHHCCHHHHHCCCCCCCCCCCCEEEEEC
T ss_conf 22026524777888986089244-79998777720377721222335552022230688874037544664597178862
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHHHHHHHHCC-----CCH--HHHHHHHHHHH
Q ss_conf 00233210123346542101468711211111244830334201303679999998524-----898--99999999986
Q gi|254780168|r 254 LQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGK-----KTI--PAAISAYQKVR 326 (380)
Q Consensus 254 ~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~-----~~~--~~~l~~Y~~~R 326 (380)
.. ....||+--.. ...+..+|+.|+|||||.+||.+|||.|+++.|+..|.+.|+. .++ -.-|+.|+++|
T Consensus 351 dk--sRa~FPLgf~h-a~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS~~~L~~y~~~~ 427 (481)
T KOG3855 351 DK--SRAQFPLGFGH-ADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGSVEHLEPYERER 427 (481)
T ss_pred CC--CEEECCCCCCC-HHHHCCCCHHHHCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 55--50425445532-8776187614214313214657666667772169999999999997213534323302999987
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHC
Q ss_conf 79999999999998898367898-999999999851533377720
Q gi|254780168|r 327 AVRVKRIRYRTKLNQLLFHMHRP-ASLFRNAGLRLGIHKPLHKSL 370 (380)
Q Consensus 327 ~~~~~~i~~~s~~~~~~~~~~~~-~~~~r~~~l~~~~~~~~~~~l 370 (380)
......+........++|+.+.| .-.+|.++|...+..+..|.+
T Consensus 428 ~~~N~~ll~~vdkl~klY~t~~p~vV~~rt~GL~~~n~l~PvKN~ 472 (481)
T KOG3855 428 LQHNYVLLGAVDKLHKLYATSAPPVVLLRTFGLQLTNALAPVKNF 472 (481)
T ss_pred HHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHCCCCCCHHHH
T ss_conf 651436888888999987225982799853452321565318999
No 47
>KOG1298 consensus
Probab=99.95 E-value=4.5e-26 Score=197.33 Aligned_cols=332 Identities=17% Similarity=0.212 Sum_probs=221.5
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCC-CCCCEEEEECCCCCCC
Q ss_conf 387753899999999997798599995687655577136678889999998899478986268-8430699978854433
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDIWI-EPEDFVFRSGSTLKEL 79 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~-~~~~~~~~~~~~~~~~ 79 (380)
||||||++|+++|..|+|.|-+|.|+||+-.-.+.--|.-++|.+...|.+||+.|.++..-. ...+..++.+. .+.-
T Consensus 49 IIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk~g-k~v~ 127 (509)
T KOG1298 49 IIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFKDG-KEVD 127 (509)
T ss_pred EEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCHHHHHHHHCHHHHHHCCCCEEEEEEEEEECC-CEEE
T ss_conf 998886227899999850785799996345561678877608506689987087877632022375226998479-3553
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC--C----CCCC--CCCC--CEEEEEEEEEC
Q ss_conf 34554323444478247862000134788997320687256421012344--3----2112--3453--10356899743
Q gi|254780168|r 80 SRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP--D----CTQI--SKIN--NQKPDLLVGAD 149 (380)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~--~----~~~~--~~~~--~~~adlvIgAD 149 (380)
..+|.+++..+..| ..+++..+.+.|++.+...+++++..++..+-. + +++. ..++ +..|-+-|.||
T Consensus 128 ~pyP~~~f~~d~~G---rsFhnGRFvq~lR~ka~slpNV~~eeGtV~sLlee~gvvkGV~yk~k~gee~~~~ApLTvVCD 204 (509)
T KOG1298 128 LPYPLKNFPSDPSG---RSFHNGRFVQRLRKKAASLPNVRLEEGTVKSLLEEEGVVKGVTYKNKEGEEVEAFAPLTVVCD 204 (509)
T ss_pred CCCCCCCCCCCCCC---CEEECCHHHHHHHHHHHCCCCEEEEEEEHHHHHHCCCEEEEEEEECCCCCEEEEECCEEEEEC
T ss_conf 35777678887432---012236999999998724897088610278787316859758986278855787355589941
Q ss_pred CCCCCCHHHCCCCCCCCCCCEEEEEEC-CCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 676631211285334431101578603-6544655456676089976540578884048973799998457742111234
Q gi|254780168|r 150 GLNSNIRHYIDTQPITFSGDVVLRCLI-PQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFL 228 (380)
Q Consensus 150 G~~S~vR~~l~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 228 (380)
|.+|+.|+.+..++..--. ..+.|.+ ...+ ....+..+..++.-..+++||++..+..+.+-+.+++-....
T Consensus 205 GcfSnlRrsL~~~~v~~V~-S~fVG~vl~N~~---l~~p~hghvIL~~pspil~Y~ISStEvRcl~~v~g~~~Psi~--- 277 (509)
T KOG1298 205 GCFSNLRRSLCDPKVEEVP-SYFVGLVLKNCR---LPAPNHGHVILSKPSPILVYQISSTEVRCLVDVPGQKLPSIA--- 277 (509)
T ss_pred CHHHHHHHHHCCCCCCCCC-HHEEEEEECCCC---CCCCCCCEEEECCCCCEEEEEECCHHEEEEEECCCCCCCCCC---
T ss_conf 2568889874487645330-231244522788---899876028954887379997064113899844754489642---
Q ss_pred CCCCCCHHHHHHHHHH-CCCCCCEE-EECCCCCC--CCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHH
Q ss_conf 5532223898986321-28022201-10023321--01233465421014687112111112448303342013036799
Q gi|254780168|r 229 KRSEIHKEWFVKHLTN-WHQEIIQL-ILQINDTH--LYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAY 304 (380)
Q Consensus 229 ~~~~~~~~~~~~~~~~-~~~~~~~~-i~~~~~~~--~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~ 304 (380)
+. ...+++.+.... ..+.+++. ++.+++-. ..|-...+ .+...+.+++|+|||-.-=||..|-||.-|+.|+.
T Consensus 278 -~g-em~~~mk~~v~PqiP~~lR~~F~~av~~g~irsmpn~~mp-a~~~~~~G~illGDAfNMRHPltggGMtV~l~Di~ 354 (509)
T KOG1298 278 -NG-EMATYMKESVAPQIPEKLRESFLEAVDEGNIRSMPNSSMP-ATLNDKKGVILLGDAFNMRHPLTGGGMTVALSDIV 354 (509)
T ss_pred -CH-HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHCCCCCCCC-CCCCCCCCEEEECCCCCCCCCCCCCCEEEEHHHHH
T ss_conf -13-6899998740767877788999988643533107423499-97578776599732003668734775576445799
Q ss_pred HHHHHHCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99998524-------8989999999998679999999999998898367
Q gi|254780168|r 305 ALSYLLGK-------KTIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHM 346 (380)
Q Consensus 305 ~La~~L~~-------~~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~ 346 (380)
.|-++|+. +.+.+.++.|...|++.+.-|...+.....+|..
T Consensus 355 lLr~ll~pl~dL~d~ekv~~~i~sFy~~RKp~s~tINtLa~Aly~vf~a 403 (509)
T KOG1298 355 LLRRLLKPLPDLSDAEKVSDYIKSFYWIRKPYSATINTLANALYQVFVA 403 (509)
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf 9999756666533489999999877876364557799999999999607
No 48
>TIGR02023 BchP-ChlP geranylgeranyl reductase; InterPro: IPR010253 This entry represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll . It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).; GO: 0045550 geranylgeranyl reductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=99.95 E-value=1.5e-26 Score=200.61 Aligned_cols=333 Identities=18% Similarity=0.212 Sum_probs=186.1
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECC-CCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCC
Q ss_conf 38775389999999999779859999568-76555771366788899999988994789862688430699978854433
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKK-DQLSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKEL 79 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~-~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (380)
+||||||+|.++|..|+++|++|.+|||+ ....+.|.+ |.| .++++++|=+++....+.. +.+.+.. ++.+
T Consensus 4 ~viGGGPsGA~AAe~LA~~G~~tiLlER~l~~~KPCGGA--IPp---~li~EFdiP~~li~~r~~~--~~miSP~-Gq~~ 75 (408)
T TIGR02023 4 AVIGGGPSGAAAAETLARAGIETILLERALSRIKPCGGA--IPP---CLIEEFDIPDDLIDRRVRK--ARMISPS-GQEI 75 (408)
T ss_pred EEEECCCCHHHHHHHHHHCCCEEEEEEHHHCCCCCCCCC--CCH---HHCCCCCCCHHHHHHHHCE--EEEECCC-CCCE
T ss_conf 898168506899999986497488630243265888886--651---1012357888899732006--4677778-8610
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEE-------EEEEC-------C--CCCCCCCC--CCCCCEE
Q ss_conf 34554323444478247862000134788997320687256-------42101-------2--34432112--3453103
Q gi|254780168|r 80 SRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARL-------HLSTH-------I--THPDCTQI--SKINNQK 141 (380)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~-------~~~~~-------v--~~~~~~~~--~~~~~~~ 141 (380)
. .+..... ...+....+|.|..|+.+|++++.+.+.-.+ +.... + .+.++.+- ....+.+
T Consensus 76 ~-v~~~~~~-P~~~~yVGMVrREvFD~~LReRA~kaGAe~~~g~f~~~~~d~~GWds~~~~~~~~~~G~k~ag~~~~~v~ 153 (408)
T TIGR02023 76 A-VEIKVDI-PVEDGYVGMVRREVFDEYLRERAQKAGAELIEGLFKKLERDEDGWDSRVTLQYREKDGKKEAGEEKKSVE 153 (408)
T ss_pred E-CCCEEEC-CCCCCEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEE
T ss_conf 0-2420243-6588667775514415789999876214766567552015677775525899876777512567777378
Q ss_pred EEEEEEECCCCCCCH-HHCCCCCCCCCCCEEEEEECCCCCC-CCCCCCCCEEEEEC----CCCEEEEEEECCCCEEEEEE
Q ss_conf 568997436766312-1128533443110157860365446-55456676089976----54057888404897379999
Q gi|254780168|r 142 PDLLVGADGLNSNIR-HYIDTQPITFSGDVVLRCLIPQNNA-PEFIDFQSVNIFFG----PDSHLVTYPLREDNTINMVF 215 (380)
Q Consensus 142 adlvIgADG~~S~vR-~~l~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~ 215 (380)
+++||||||++|.|. +.++.. ..+.-.+||.-.|..++. ......+.+.+|++ |+++-++||-.+ ... |.
T Consensus 154 ~~~VIGADGA~S~vAR~~~~~~-~~~~~viA~qEri~~p~~~~~~y~e~~~d~~~~g~VSPDFYgW~FPk~d--H~a-vG 229 (408)
T TIGR02023 154 ADVVIGADGANSKVARKELGLP-DNLPKVIAYQERIKLPDESKMKYYEELADVYYDGEVSPDFYGWVFPKGD--HIA-VG 229 (408)
T ss_pred EEEEEECCCCCCHHHHHHCCCC-CCHHHEEEHHHEECCCCCCCCCCCCCEEEEEECCEECCCCCCCCCCCCC--EEE-EE
T ss_conf 9887604478865889718758-8602302011200488865657788779999888048642302068877--788-83
Q ss_pred EECCCCCCCCCCCCCCCCCHHHHHHHHHHCCC-CCCEEEECCCCCCCCCCCCCCCCCCCCCCC-EEECHHHCCCCCCCHH
Q ss_conf 84577421112345532223898986321280-222011002332101233465421014687-1121111124483033
Q gi|254780168|r 216 VSSKHTLKDISFLKRSEIHKEWFVKHLTNWHQ-EIIQLILQINDTHLYPLFECECKHWHNKKN-AVLIGDAAHTLLPFAA 293 (380)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~l~~~~~~~~~~~~r-v~LiGDAAH~~~P~~G 293 (380)
+-... .. ....+.++..+..-.. .+.. ..+-....-||+.. +.+.|..+| |+|+||||-.+.|.+|
T Consensus 230 ~Gt~P--------~h-~~d~K~~~~~lr~~~GD~L~~--~~tir~EaapIPm~-Pr~~~~~~r~~~L~GDAAG~V~~~SG 297 (408)
T TIGR02023 230 TGTEP--------TH-GFDIKQLQAALRRRAGDKLDG--GKTIRREAAPIPMK-PRPRWDSGRDVVLVGDAAGLVTPASG 297 (408)
T ss_pred CCCCC--------CC-HHHHHHHHHHHHHHHHHHHHC--CCCCHHCCCCCCCC-CCCCCCCCCCEEEECCCCCCEECCCC
T ss_conf 27885--------64-278999999999873026561--83010026767755-44100058866998134663344376
Q ss_pred HHHCCCHHHHHHHHHH----HC--C-CCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 4201303679999998----52--4-89899999999986799999999-9999889836789899999999985153
Q gi|254780168|r 294 QGANMAIEDAYALSYL----LG--K-KTIPAAISAYQKVRAVRVKRIRY-RTKLNQLLFHMHRPASLFRNAGLRLGIH 363 (380)
Q Consensus 294 qG~n~al~Da~~La~~----L~--~-~~~~~~l~~Y~~~R~~~~~~i~~-~s~~~~~~~~~~~~~~~~r~~~l~~~~~ 363 (380)
+|+-.||..+..=|+. |+ + .-.+.-|..|++.=+..=..+.. +.-+|...|.++. .|..|..+...
T Consensus 298 EGIY~Am~sG~~aA~a~~E~l~~Gkk~~~a~~L~~y~~~f~K~y~~~f~~L~~LQ~~~Yrsd~----~RE~FV~mC~D 371 (408)
T TIGR02023 298 EGIYFAMKSGKMAAEAIVEALQSGKKAIDATDLRKYEKKFMKLYGTTFRVLRVLQKVYYRSDR----RREKFVEMCRD 371 (408)
T ss_pred CHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHCC
T ss_conf 168887631078999999998445325244644789999876315043466777432138872----02478775278
No 49
>TIGR02032 GG-red-SF geranylgeranyl reductase family; InterPro: IPR011777 This entry includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates..
Probab=99.95 E-value=1.5e-26 Score=200.54 Aligned_cols=296 Identities=20% Similarity=0.198 Sum_probs=179.7
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCC--CCCEEEECHHHHHHHHHCCCHH--------HHHHCCCC--CCCE
Q ss_conf 3877538999999999977985999956876555--7713667888999999889947--------89862688--4306
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSD--SGFGIQISPNASRILKRIGILD--------QLEDIWIE--PEDF 68 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~--~g~gi~l~p~~~~~L~~lGi~~--------~~~~~~~~--~~~~ 68 (380)
|||||||||+++|..|+++|++|.||||+..++. ..+|-.|+++.++.|...+--+ ...-.-.. ..+.
T Consensus 4 vvvGaGPaG~~aA~~~A~~G~~Vllle~~~~~r~P~k~CGg~~~~~~~~~~~~~~~d~~~L~~~P~~~~~~~~~~~~~~~ 83 (343)
T TIGR02032 4 VVVGAGPAGSSAAYRLAKKGLRVLLLEKKSFPRYPGKPCGGALSPRVLEELVLPGPDEYALKDIPKELIVNEVRTLFNGA 83 (343)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEEEHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHEECCC
T ss_conf 99827746899999999569738898504507988600577667001311367888861301477434542001100143
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCC---CCCCC--CCC-----CC
Q ss_conf 999788544333455432344447824786200013478899732068725642101234---43211--234-----53
Q gi|254780168|r 69 VFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITH---PDCTQ--ISK-----IN 138 (380)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~---~~~~~--~~~-----~~ 138 (380)
.++...... + ..... ... .....++|.|.+|++.|.+++++.+ .++..++++.. .+.++ +.+ ..
T Consensus 84 ~~~~~~~~~-~-~~~~~--~~~-~~~~~~v~~R~~fD~~L~~~A~~~G-~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~ 157 (343)
T TIGR02032 84 RIISPNGDK-V-EIPIE--ELA-FTEEAYVIDRDAFDEFLAERAQEAG-AELRLGTTVLDVEIEDKVVVEVRGGDDESKG 157 (343)
T ss_pred EEEECCCCE-E-EECCH--HHC-CCCEEEEEECHHHHHHHHHHHHHCC-CEEEECCEEEEEEECCCEEEEEECCCCCCCC
T ss_conf 388078632-2-10222--112-4743789852674189999997578-0675263761127618368997268675660
Q ss_pred CEEEEEEEEECCCCCCCHH-HCC----CCCC-CC-CCCEEEEEECCCCCCCCCCCCCCEEEEE----C---CCCEEEEEE
Q ss_conf 1035689974367663121-128----5334-43-1101578603654465545667608997----6---540578884
Q gi|254780168|r 139 NQKPDLLVGADGLNSNIRH-YID----TQPI-TF-SGDVVLRCLIPQNNAPEFIDFQSVNIFF----G---PDSHLVTYP 204 (380)
Q Consensus 139 ~~~adlvIgADG~~S~vR~-~l~----~~~~-~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~----~---~~~~~~~~p 204 (380)
+..||+||||||.+|++++ .++ ...+ +. .--.+++..++.. .....+...+.+++ - |+++.+.||
T Consensus 158 ~~~a~~vigADG~~S~~~~~~lg~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~D~v~v~~~~~~~qrv~ggY~W~FP 236 (343)
T TIGR02032 158 EVTAKIVIGADGARSIVAKKKLGSSATLRENKEKRELGVALRAEVEMP-VEEEVDEDFVEVYIDRGLSQRVPGGYGWVFP 236 (343)
T ss_pred EEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHEEEEEEEEECCC-CCCCCCCCEEEEEECCCEEEECCCCEEEEEC
T ss_conf 462558997168878432124787787777754120245546773067-6762357458999788013323787068854
Q ss_pred ECCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCC---CCCCE-EEECCCCCCCCC---CCCCCCCCCCCCCC
Q ss_conf 048973799998457742111234553222389898632128---02220-110023321012---33465421014687
Q gi|254780168|r 205 LREDNTINMVFVSSKHTLKDISFLKRSEIHKEWFVKHLTNWH---QEIIQ-LILQINDTHLYP---LFECECKHWHNKKN 277 (380)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~i~~~~~~~~~~---l~~~~~~~~~~~~r 277 (380)
..+ ..+++-....+.+... ......++.+.+..+... +.+.. -.. ..+....+ |+......+.+++|
T Consensus 237 ~G~-~~~nvG~g~~~~~~~~----~~~~~~~~~l~~f~~~~~~~~~~l~~~D~~-~~~~~~~~~WliP~~~~~~~~~~~~ 310 (343)
T TIGR02032 237 KGD-GTANVGVGSLPETDAA----EEGEDLKKYLKDFLAARPVAKEDLKNEDAV-EVEVIGAPKWLIPIRRPDEKLVRGN 310 (343)
T ss_pred CCC-CEEEEEEEECCCCCCC----CCCCCHHHHHHHHHHHCCCCHHHHHCCCCC-CCCCCCCCEEEEECCCCCCCCCCCC
T ss_conf 888-6899998753651123----355667899999999648861365304770-0000133134541486322113488
Q ss_pred EEECHHHCCCCCCCHHHHHCCCHHHHHHHHHH
Q ss_conf 11211111244830334201303679999998
Q gi|254780168|r 278 AVLIGDAAHTLLPFAAQGANMAIEDAYALSYL 309 (380)
Q Consensus 278 v~LiGDAAH~~~P~~GqG~n~al~Da~~La~~ 309 (380)
++|+||||-.+.|+.|.|+..||..+..=|+.
T Consensus 311 ~ll~GDAAg~V~P~~GgGI~yA~~~G~~Aa~~ 342 (343)
T TIGR02032 311 VLLVGDAAGFVKPLTGGGIYYAMRAGRVAAEV 342 (343)
T ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 89993376722675567178999999986215
No 50
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.95 E-value=1.1e-24 Score=187.79 Aligned_cols=303 Identities=19% Similarity=0.178 Sum_probs=172.1
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC-EEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCC
Q ss_conf 3877538999999999977985999956876555771-366788899999988994789862688430699978854433
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGF-GIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKEL 79 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~-gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (380)
+||||||||+++|+.|+++|++|.|+||.+++..... +-.+.|++++.|...... + .........++.. +....
T Consensus 7 vIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~-~---i~~~v~~~~~~~~-~~~~~ 81 (396)
T COG0644 7 VIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDE-E---IERKVTGARIYFP-GEKVA 81 (396)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCHH-H---HEEEEEEEEEECC-CCEEE
T ss_conf 99897889999999998579929999657889998767666787788774555213-3---2133202699715-74268
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCCC----CCCC---CCCCCEEEEEEEEECCCC
Q ss_conf 345543234444782478620001347889973206872564210123443----2112---345310356899743676
Q gi|254780168|r 80 SRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHPD----CTQI---SKINNQKPDLLVGADGLN 152 (380)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~~----~~~~---~~~~~~~adlvIgADG~~ 152 (380)
+.... ...+.|.|..|+++|.+.+.+.+ ..+..++++.... .+.. ....+.+|++||+|||++
T Consensus 82 --~~~~~-------~~~y~v~R~~fd~~La~~A~~aG-ae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ak~vI~AdG~~ 151 (396)
T COG0644 82 --IEVPV-------GEGYIVDRAKFDKWLAERAEEAG-AELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVN 151 (396)
T ss_pred --EECCC-------CCEEEEEHHHHHHHHHHHHHHHC-CEEEECCEEEEEEEECCCEEEEEECCCEEEECCEEEECCCCC
T ss_conf --74488-------85799888998899999999839-899818788999981781699995686699618999884857
Q ss_pred CCCHHHCCCCCCCCC-CCEEEEEECCCCCCCCCCCCCC-EEEE----ECCCCEEEEEEECCCCEEEEEEEECCCCCCCCC
Q ss_conf 631211285334431-1015786036544655456676-0899----765405788840489737999984577421112
Q gi|254780168|r 153 SNIRHYIDTQPITFS-GDVVLRCLIPQNNAPEFIDFQS-VNIF----FGPDSHLVTYPLREDNTINMVFVSSKHTLKDIS 226 (380)
Q Consensus 153 S~vR~~l~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~-~~~~----~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 226 (380)
|.+++.++....... ...++...+... .+... ...| ..+.++.++||..++ ..++........ ..
T Consensus 152 ~~l~~~lg~~~~~~~~~~~~~~e~~~~~-----~~~~~~~~~~~~~~~~~~Gy~wifP~~~~-~~~VG~~~~~~~-~~-- 222 (396)
T COG0644 152 SALARKLGLKDRKPEDYAIGVKEVIEVP-----DDGDVEEFLYGPLDVGPGGYGWIFPLGDG-HANVGIGVLLDD-PS-- 222 (396)
T ss_pred HHHHHHHCCCCCCCCEEEEEEEEEEECC-----CCCCEEEEEEECCCCCCCCEEEEEECCCC-EEEEEEEEECCC-CC--
T ss_conf 6889872887778743689999998279-----88750589983366678857999988997-599999996477-66--
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCEEEE--CCCC--CCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHH
Q ss_conf 3455322238989863212802220110--0233--21012334654210146871121111124483033420130367
Q gi|254780168|r 227 FLKRSEIHKEWFVKHLTNWHQEIIQLIL--QIND--THLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIED 302 (380)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~--~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~D 302 (380)
.....+ ..+.|.. ++.....+. ...+ ....|.......+ ...+|++||||||-.+.|+.|.|+..||..
T Consensus 223 ----~~~~~~-~~~~f~~-~~~~~~~~~~~~~~~~~~~~ip~~g~~~~~-~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~s 295 (396)
T COG0644 223 ----LSPFLE-LLERFKE-HPAIRKLLLGGKILEYAAGGIPEGGPASRP-LVGDGVLLVGDAAGFVNPLTGEGIRYAIKS 295 (396)
T ss_pred ----CCHHHH-HHHHHHH-CCCCCHHCCCCCEEEEEEEEEECCCCCCCC-EECCCEEEEECCCCCCCCCCCCCHHHHHHH
T ss_conf ----433699-9999861-644300025761775300054137755562-052898999846667488655773999999
Q ss_pred HHHHHHHHCCCC--HHHHHHHHHHHHHH-HHHHHH
Q ss_conf 999999852489--89999999998679-999999
Q gi|254780168|r 303 AYALSYLLGKKT--IPAAISAYQKVRAV-RVKRIR 334 (380)
Q Consensus 303 a~~La~~L~~~~--~~~~l~~Y~~~R~~-~~~~i~ 334 (380)
+..+++.+.+.. ..+.|..|++..+. ......
T Consensus 296 g~~Aae~i~~~~~~~~~~l~~Y~~~~~~~~~~~~~ 330 (396)
T COG0644 296 GKLAAEAIAEALEGGEEALAEYERLLRKSLAREDL 330 (396)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999864222446799999999888889999
No 51
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.95 E-value=9.5e-25 Score=188.26 Aligned_cols=312 Identities=18% Similarity=0.223 Sum_probs=170.2
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-CCEEEECHHHHHHHHHCCCHHHH-HHCCCCCCCEEEEECCCCCC
Q ss_conf 38775389999999999779859999568765557-71366788899999988994789-86268843069997885443
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDS-GFGIQISPNASRILKRIGILDQL-EDIWIEPEDFVFRSGSTLKE 78 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~-g~gi~l~p~~~~~L~~lGi~~~~-~~~~~~~~~~~~~~~~~~~~ 78 (380)
|||||||||+++|+.|+|+|++|.|+||.++++.. -.|-.|.|++++-|-- +.+++. .+..+..+.+.+.+..+...
T Consensus 9 IVVGAGPAGsaAA~~LA~~Gl~VllLEKg~~pG~k~~sG~~l~~~~l~~liP-~~~~~aP~er~V~~~~~~~l~~~~~~~ 87 (428)
T PRK10157 9 IIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIP-GFADSAPVERLITHEKLAFMTEKSAMT 87 (428)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEECCCHHHHHCC-CCHHCCCCCEEEEEEEEEEECCCCCEE
T ss_conf 9999688999999999878990999967888998761175405206888687-841029862478986899986898455
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC---CC-C--CCCCCCCEEEEEEEEECCCC
Q ss_conf 334554323444478247862000134788997320687256421012344---32-1--12345310356899743676
Q gi|254780168|r 79 LSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP---DC-T--QISKINNQKPDLLVGADGLN 152 (380)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~---~~-~--~~~~~~~~~adlvIgADG~~ 152 (380)
+++............++|.|..|+++|.+++++.+. .+..++.|++. ++ + ..++++..+|++||+|||++
T Consensus 88 ---~~~~~~~~~~~~~~~y~V~R~~FD~wLa~~Ae~aGA-~i~~g~~V~~li~~~GrVvGV~~~G~~i~A~vVI~AdGv~ 163 (428)
T PRK10157 88 ---MDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGA-QLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVN 163 (428)
T ss_pred ---CCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCC-EEECCCEEEEEEEECCEEEEEECCCCEEEEEEEEEECCCH
T ss_conf ---677787756688761898999999999999998098-8986858100143489799997589589871799944721
Q ss_pred CCCHHHCCCCCCCCCCCE--EEEEE--CCCCCCCCCC---C-CCCEEEEECC--C---CEEEEEEECCCCEEEEEEEECC
Q ss_conf 631211285334431101--57860--3654465545---6-6760899765--4---0578884048973799998457
Q gi|254780168|r 153 SNIRHYIDTQPITFSGDV--VLRCL--IPQNNAPEFI---D-FQSVNIFFGP--D---SHLVTYPLREDNTINMVFVSSK 219 (380)
Q Consensus 153 S~vR~~l~~~~~~~~~~~--~~~~~--i~~~~~~~~~---~-~~~~~~~~~~--~---~~~~~~p~~~~~~~~~~~~~~~ 219 (380)
|.+.+.++..+......+ ++.-+ ++.....+.+ + ......+.|. + +.-.+|. +++..++.....-
T Consensus 164 s~la~~~Gl~~~~~p~~~~~gvKE~~~lp~~~i~~rf~l~~~eG~~~~~~G~~~~g~~GgGflyt--n~~~vsiG~v~~l 241 (428)
T PRK10157 164 SILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYT--NENTLSLGLVCGL 241 (428)
T ss_pred HHHHHHHCCCCCCCCCCEEEEEEEEEECCHHHHHHHCCCCCCCCEEEECCCCCCCCCCCEEEEEC--CCCEEEEEEEEEH
T ss_conf 77798728887788741289999999649766433205578887599835688789863289975--8970899888512
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCC----CCCCCCCCCCCCCCCCCCCEEECHHHCCCCCC--CHH
Q ss_conf 742111234553222389898632128022201100233----21012334654210146871121111124483--033
Q gi|254780168|r 220 HTLKDISFLKRSEIHKEWFVKHLTNWHQEIIQLILQIND----THLYPLFECECKHWHNKKNAVLIGDAAHTLLP--FAA 293 (380)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P--~~G 293 (380)
+.. .........+++.|+. +|.+..++..... ....|.......+..+.++++|+||||.-+.| +.+
T Consensus 242 ~~~------~~~~~~~~~~le~fk~-hP~i~~ll~gg~~iey~a~~ipegG~~~~P~l~~dG~llvGDAAG~v~n~~~~~ 314 (428)
T PRK10157 242 HHL------HDAKKSVPQMLEDFKQ-HPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTI 314 (428)
T ss_pred HHC------CCCCCCHHHHHHHHHH-CCCHHHHCCCCEEEEEEEEECCCCCCCCCCCEECCCEEEEEECCCCCCCCCCCC
T ss_conf 214------5445797999998852-950565258977988733662776545688485399899970777756767522
Q ss_pred HHHCCCHHHHHHHHHHH----CCCC-HHHHHHHHHHHH
Q ss_conf 42013036799999985----2489-899999999986
Q gi|254780168|r 294 QGANMAIEDAYALSYLL----GKKT-IPAAISAYQKVR 326 (380)
Q Consensus 294 qG~n~al~Da~~La~~L----~~~~-~~~~l~~Y~~~R 326 (380)
.|+++||..+..-|+.+ ...+ ..+.|..|++.=
T Consensus 315 ~Gi~~Am~SG~lAAeai~~A~~~~d~S~~~L~~Y~~~l 352 (428)
T PRK10157 315 RGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHL 352 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 21999999999999999999973997678899999998
No 52
>PRK10015 hypothetical protein; Provisional
Probab=99.93 E-value=1e-23 Score=181.21 Aligned_cols=310 Identities=15% Similarity=0.197 Sum_probs=164.5
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC--CCEEEECHHHHHHHHHCCCHHHH-HHCCCCCCCEEEEECCCCC
Q ss_conf 38775389999999999779859999568765557--71366788899999988994789-8626884306999788544
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDS--GFGIQISPNASRILKRIGILDQL-EDIWIEPEDFVFRSGSTLK 77 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~--g~gi~l~p~~~~~L~~lGi~~~~-~~~~~~~~~~~~~~~~~~~ 77 (380)
|||||||||+++|+.|+|+|++|.|+||.+++... +.++ |.|++++.|-- +.+++. ....+..+.+.+.+..+..
T Consensus 9 IVVGaGPAG~sAA~~LAk~Gl~VlllErg~~~G~k~~sGgv-l~~~~le~liP-~~~~~aP~er~V~~~~~~~l~~~~~~ 86 (429)
T PRK10015 9 IVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGR-LYAHTLEAIIP-GFAASAPVERKVTREKISFLTEESAV 86 (429)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCE-ECHHHHHHHCC-CCCCCCCCCEEEEEEEEEEECCCCCE
T ss_conf 99996889999999998779919999678879985512637-41627888688-96447985215898789998789806
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC----CCCC-C-CCCCCEEEEEEEEECCC
Q ss_conf 3334554323444478247862000134788997320687256421012344----3211-2-34531035689974367
Q gi|254780168|r 78 ELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP----DCTQ-I-SKINNQKPDLLVGADGL 151 (380)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~----~~~~-~-~~~~~~~adlvIgADG~ 151 (380)
. ++.............++|.|..|+++|.+++++.+. .+..++.|+.. +.+. + +.....+|++||+|||+
T Consensus 87 ~---i~~~~~~~~~~~~~~y~v~R~~fD~WLa~~Ae~aGa-~i~~g~~v~~l~~e~g~V~GV~tg~~~l~A~vVI~AdGv 162 (429)
T PRK10015 87 T---LDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGA-QFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGV 162 (429)
T ss_pred E---CCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCC-EEECCCEEEEEEEECCEEEEEECCCCEEEEEEEEEECCC
T ss_conf 6---676567867667786598999999999999997599-997795899999629989999879826886589981562
Q ss_pred CCCCHHHCCCCCCCCCCCE--EEEEEC--CCCCCCCCC---C-CCCEEEEECC-----CCEEEEEEECCCCEEEEEEEEC
Q ss_conf 6631211285334431101--578603--654465545---6-6760899765-----4057888404897379999845
Q gi|254780168|r 152 NSNIRHYIDTQPITFSGDV--VLRCLI--PQNNAPEFI---D-FQSVNIFFGP-----DSHLVTYPLREDNTINMVFVSS 218 (380)
Q Consensus 152 ~S~vR~~l~~~~~~~~~~~--~~~~~i--~~~~~~~~~---~-~~~~~~~~~~-----~~~~~~~p~~~~~~~~~~~~~~ 218 (380)
||.+.++++..+......+ +..-++ +.....+.+ . ......|.|. .+.-.+|+ +++ .+++.....
T Consensus 163 ns~la~~lgl~~~~~p~~~~lgvKEv~~l~~~~ie~rf~l~~~~G~~~~~~G~~~~~~~GgGflYt-n~d-~vSiG~v~~ 240 (429)
T PRK10015 163 NSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYT-NKD-SISLGLVCG 240 (429)
T ss_pred CHHHHHHHCCCCCCCHHHCCEEEEEEEECCHHHHHHCCCCCCCCCEEEECCCCCCCCCCCEEEEEC-CCC-CEEEEEEEE
T ss_conf 279999819998899546106899985179767321036455677288716888889875168861-897-589999985
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCC----CCCCCCCCCCCCCCCCCCCEEECHHHCCCC-C-CCH
Q ss_conf 7742111234553222389898632128022201100233----210123346542101468711211111244-8-303
Q gi|254780168|r 219 KHTLKDISFLKRSEIHKEWFVKHLTNWHQEIIQLILQIND----THLYPLFECECKHWHNKKNAVLIGDAAHTL-L-PFA 292 (380)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~-~-P~~ 292 (380)
-... .........+++.|+. +|.+..+++..+. ....|--.....+..+.++++|+||||.-+ + |+.
T Consensus 241 l~d~------~~~~~~~~~~le~fK~-hP~i~~ll~gG~~~eY~A~~IpeGG~~~iPkl~~dG~llvGDAAGfv~n~~~~ 313 (429)
T PRK10015 241 LGDI------AHAQKSVPQMLEDFKQ-HPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGFCLNLGFT 313 (429)
T ss_pred CCCC------CCCCCCHHHHHHHHHH-CCCHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC
T ss_conf 3432------3468897999999863-93134552698798862543587875578752259869995176775687742
Q ss_pred HHHHCCCHHHHHHHHHHH----CCCC-HHHHHHHHHHH
Q ss_conf 342013036799999985----2489-89999999998
Q gi|254780168|r 293 AQGANMAIEDAYALSYLL----GKKT-IPAAISAYQKV 325 (380)
Q Consensus 293 GqG~n~al~Da~~La~~L----~~~~-~~~~l~~Y~~~ 325 (380)
+.|+++||+.+..-|+.+ ...+ ....|..|++.
T Consensus 314 ~~Gi~~Am~SG~lAAeai~~A~~~~d~s~~~L~~Y~~~ 351 (429)
T PRK10015 314 VRGMDLAIASAQAAATTVIAAKERADFSASSLAQYKRE 351 (429)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 21179999999999999999997089861029999999
No 53
>TIGR02028 ChlP geranylgeranyl reductase; InterPro: IPR011774 This entry represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll..
Probab=99.85 E-value=1e-19 Score=153.66 Aligned_cols=330 Identities=18% Similarity=0.217 Sum_probs=185.3
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCC-CCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 877538999999999977985999956876-5557713667888999999889947898626884306999788544333
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQ-LSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELS 80 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~-~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
||||||||.++|-.|++.|++..|+||+.+ -++.|.+|=| =+++++.|=.++.++-+ ..|...+.++...
T Consensus 5 VvGGGPAG~sAAE~LA~aG~~~~L~ER~~~~aKPCGGAIPL-----CMv~EF~lP~d~iDRRV--~kMk~~SPSN~~~-- 75 (401)
T TIGR02028 5 VVGGGPAGASAAETLAKAGIQTFLLERKLDNAKPCGGAIPL-----CMVDEFDLPRDIIDRRV--TKMKMISPSNIAV-- 75 (401)
T ss_pred EECCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCC-----CCCCHHCCCHHHHHCCC--CEEEEECCCCHHH--
T ss_conf 97489741689999985031046332056788778886441-----20101037866751211--0224216410133--
Q ss_pred CCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEEC--CCCCCC-------CC--------C--CCCCCEE
Q ss_conf 455432344447824786200013478899732068725642101--234432-------11--------2--3453103
Q gi|254780168|r 81 RFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTH--ITHPDC-------TQ--------I--SKINNQK 141 (380)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~--v~~~~~-------~~--------~--~~~~~~~ 141 (380)
+++.... .+....++.|..|+.+|++++.+.+. ++..+.. .+.... ++ - ..-.+.+
T Consensus 76 --d~gr~L~--~~~yIgM~RREVLDsflR~RA~~~GA-~li~Glv~~l~~P~~p~~~PY~lHY~~~Dg~~G~~g~~~~lE 150 (401)
T TIGR02028 76 --DIGRTLK--EHEYIGMVRREVLDSFLRERAADAGA-TLINGLVLKLELPADPADDPYTLHYVEEDGKGGASGTKKTLE 150 (401)
T ss_pred --HHHCCCC--CCCCCCCHHHHHHHHHHHHHHHHCCC-EEECCEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCEEEE
T ss_conf --2000278--87612514578888999999986488-141444576317788877871789870068758764540688
Q ss_pred EEEEEEECCCCCCCHHHCCCCCCCCCCCEEE--EEECCCCCCCCCCCCCCEEEEECC----CCEEEEEEECCCCEEEEEE
Q ss_conf 5689974367663121128533443110157--860365446554566760899765----4057888404897379999
Q gi|254780168|r 142 PDLLVGADGLNSNIRHYIDTQPITFSGDVVL--RCLIPQNNAPEFIDFQSVNIFFGP----DSHLVTYPLREDNTINMVF 215 (380)
Q Consensus 142 adlvIgADG~~S~vR~~l~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~p~~~~~~~~~~~ 215 (380)
-|.||||||+||+|.+.++.. .|+.-++| |.-+|.+.+....+. .++|.|. +++-++||-
T Consensus 151 VD~VIGADGANSRvAk~idAG--DY~~AIAfQERIRlPde~MaYY~dL--AEMYVGdDVSPDFYgWVFPK---------- 216 (401)
T TIGR02028 151 VDAVIGADGANSRVAKEIDAG--DYDYAIAFQERIRLPDEKMAYYDDL--AEMYVGDDVSPDFYGWVFPK---------- 216 (401)
T ss_pred EEEEECCCCCCCHHHCCCCCC--CHHHHHHHHHCCCCCCHHHHHHHHH--HHHCCCCCCCCCCCCCCCCC----------
T ss_conf 877870787520231113788--5234444332036870112346643--33200788686634010677----------
Q ss_pred EECCCCCCCCCCCCCCCCCHHHHHHHHHHCC-CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHH
Q ss_conf 8457742111234553222389898632128-022201100233210123346542101468711211111244830334
Q gi|254780168|r 216 VSSKHTLKDISFLKRSEIHKEWFVKHLTNWH-QEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQ 294 (380)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~Gq 294 (380)
-++-.-............+.|+....... ..+.. ..+-.+...||+.+|=.+.. .+||.||||||-.++=-+|+
T Consensus 217 --~DHVAVGTGTvk~~K~~Ik~lQ~g~R~RA~~K~~G--G~iirVEAHPIPEHPRPRRv-~~RVALVGDAAG~VTkcSGE 291 (401)
T TIGR02028 217 --CDHVAVGTGTVKAAKDEIKKLQSGIRARAADKVAG--GKIIRVEAHPIPEHPRPRRV-VGRVALVGDAAGYVTKCSGE 291 (401)
T ss_pred --CCEEEECCCEEEECCHHHHHHHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCCEE-CCEEEEEECCCCCEEECCCC
T ss_conf --36477335314505078899988887878866048--80899813477542488500-12057763366753500365
Q ss_pred HHCCCHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 2013036799999985248-------989999999998679999-99999999889836789899999999985153337
Q gi|254780168|r 295 GANMAIEDAYALSYLLGKK-------TIPAAISAYQKVRAVRVK-RIRYRTKLNQLLFHMHRPASLFRNAGLRLGIHKPL 366 (380)
Q Consensus 295 G~n~al~Da~~La~~L~~~-------~~~~~l~~Y~~~R~~~~~-~i~~~s~~~~~~~~~~~~~~~~r~~~l~~~~~~~~ 366 (380)
|+-.|-..+..=++.+-+. ..+..++.|=+ |+...- .....=.+.++.|--+++ .|..+..|...+..
T Consensus 292 GIYFAAkSgR~Ca~a~~~~~~~g~~~~~~g~~~~YL~-rWD~~y~~Ty~~LDlLQrVFYrs~a---~REA~VEMC~D~~V 367 (401)
T TIGR02028 292 GIYFAAKSGRLCAEAIVEESRLGKKVTEEGDLKKYLK-RWDKEYRPTYRVLDLLQRVFYRSNA---AREAFVEMCADEDV 367 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-HHHHHHCCHHHHHHHHHHHHCCCCC---CHHHHHHHCCCHHH
T ss_conf 0546654445688998864303640134678899988-7655314265666677654327884---01145422174034
Q ss_pred HH
Q ss_conf 77
Q gi|254780168|r 367 HK 368 (380)
Q Consensus 367 ~~ 368 (380)
.|
T Consensus 368 Qk 369 (401)
T TIGR02028 368 QK 369 (401)
T ss_pred HH
T ss_conf 55
No 54
>pfam04820 Trp_halogenase Tryptophan halogenase. Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent.
Probab=99.76 E-value=4e-15 Score=122.20 Aligned_cols=311 Identities=16% Similarity=0.171 Sum_probs=187.4
Q ss_pred CEECCHHHHHHHHHHHHHC---CCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHH--HHHCCC-CCCCEEEEECC
Q ss_conf 3877538999999999977---98599995687655577136678889999998899478--986268-84306999788
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHR---GIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQ--LEDIWI-EPEDFVFRSGS 74 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~---G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~--~~~~~~-~~~~~~~~~~~ 74 (380)
+|||||.||.++|..|++. +++|+|||+ +++..+|-|.+-.|.-..+|+.+||-+. ++++.. .-.++.|.++.
T Consensus 3 vIvGGGTAGWmtA~~L~~~~~~~~~ItlIES-~~i~~iGVGE~T~p~~~~~l~~lGI~e~~fm~~~~AT~K~Gi~F~nW~ 81 (457)
T pfam04820 3 VIVGGGTAGWMAAAALARALKGGLDVTLVES-EEIGTVGVGEATIPSIRTFNRMLGIDEAEFMRATQATFKLGIRFEDWG 81 (457)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCCEEEEEEC-CCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCEEECCEEECCCC
T ss_conf 9989879999999999986599987999967-999987845763799999999839998999997398877837831868
Q ss_pred CC-CCCCCCCCCCC----------------------------------------C---CCC-----CCCEEEEEECCHHH
Q ss_conf 54-43334554323----------------------------------------4---444-----78247862000134
Q gi|254780168|r 75 TL-KELSRFSCKNY----------------------------------------S---RNN-----WGGIYGVVKRHTLQ 105 (380)
Q Consensus 75 ~~-~~~~~~~~~~~----------------------------------------~---~~~-----~~~~~~~i~r~~l~ 105 (380)
.. .... .++... . .+. .....+.++...+-
T Consensus 82 ~~~~~y~-hpF~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~k~~p~~~~~~~~~~~~~yayHfDA~k~~ 160 (457)
T pfam04820 82 RRGERYI-HPFGVTGHPIDGVPFHHYWLRLRARGFAGPLDDYCLPAVAALAGKFSPPPKDPRSGLSGLSYAYHFDAALYA 160 (457)
T ss_pred CCCCCEE-ECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECHHHHH
T ss_conf 8998248-357677877566752799998652477898788769999998469998877766656676646872799999
Q ss_pred HHHHHHHHHCCCEEEEEE-ECCC-C----CCCCCCCCCCCEEEEEEEEECCCCCCCH-HHCCCCCCCCCC----CEEEEE
Q ss_conf 788997320687256421-0123-4----4321123453103568997436766312-112853344311----015786
Q gi|254780168|r 106 KILLNHIQTQPLARLHLS-THIT-H----PDCTQISKINNQKPDLLVGADGLNSNIR-HYIDTQPITFSG----DVVLRC 174 (380)
Q Consensus 106 ~~L~~~~~~~~~~~~~~~-~~v~-~----~~~~~~~~~~~~~adlvIgADG~~S~vR-~~l~~~~~~~~~----~~~~~~ 174 (380)
+.|++.+...++..+... +.|. + ...+.+.++.+++|||.|-|-|-+|.+= +.++.+-..|+. ..|+..
T Consensus 161 ~~Lr~~a~~~GV~~i~~~V~~v~~~~~G~I~sl~l~~G~~i~aDlfIDCTGF~~lLi~~~l~~~~~s~s~~L~~d~Ava~ 240 (457)
T pfam04820 161 RFLRRNAEARGVTRVEGKVVDVQLDADGFVTSLRLEDGREVEADLFIDCSGFRGLLIEQALKTGYEDWSDWLPCDRALAV 240 (457)
T ss_pred HHHHHHHHHCCCEEEEEEEEEEEECCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEE
T ss_conf 99999888579889984787999889996789996789888764899778741100001359985157560656732566
Q ss_pred ECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEE
Q ss_conf 03654465545667608997654057888404897379999845774211123455322238989863212802220110
Q gi|254780168|r 175 LIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKRSEIHKEWFVKHLTNWHQEIIQLIL 254 (380)
Q Consensus 175 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 254 (380)
.++..+.. .+.....-.+.|+++-.|+.+.....+|+.. +-. ..+...+.+.+.+.. ...
T Consensus 241 ~~~~~~~~----~pyT~atA~~~GW~W~IPL~~R~G~GYVyss--~~~-------s~e~A~~el~~~~~~---~~~---- 300 (457)
T pfam04820 241 QCESVGPP----EPYTRATAHDAGWRWRIPLQHRLGNGYVYSS--AHA-------DDDEALAELLANLGG---IPL---- 300 (457)
T ss_pred ECCCCCCC----CCCEEEEECCCCEEEEEECCCCCEEEEEECC--CCC-------CHHHHHHHHHHHCCC---CCC----
T ss_conf 35767899----7503556404873686425765301799638--989-------989999999986287---644----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHH
Q ss_conf 023321012334654210146871121111124483033420130367999999852489-8999999999867999999
Q gi|254780168|r 255 QINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKKT-IPAAISAYQKVRAVRVKRI 333 (380)
Q Consensus 255 ~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~-~~~~l~~Y~~~R~~~~~~i 333 (380)
...+..++..-.....|. +||+-||.|+.-+-|.-+-|+-+.+..+..|.+.+.... .+...+.|.+....+...+
T Consensus 301 --~~~r~i~f~~G~~~~~W~-kNcvaiGLsagFiEPLEsT~i~l~~~~i~~l~~~~p~~~~~~~~~~~yN~~~~~~~~~~ 377 (457)
T pfam04820 301 --AEPRLIRFTTGRRKQAWV-KNVVALGLASGFLEPLESTSIHLIQSALRRLLALFPDGGFDPAAIAEYNRRIAREYERI 377 (457)
T ss_pred --CCCCEEECCCCCEEECCC-CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf --677523000674000446-88899831025677722222999999999999965778888799999999999999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780168|r 334 RYR 336 (380)
Q Consensus 334 ~~~ 336 (380)
...
T Consensus 378 ~dF 380 (457)
T pfam04820 378 RDF 380 (457)
T ss_pred HHH
T ss_conf 999
No 55
>pfam05834 Lycopene_cycl Lycopene cyclase protein. This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare.
Probab=99.68 E-value=8.8e-14 Score=113.02 Aligned_cols=274 Identities=16% Similarity=0.161 Sum_probs=146.7
Q ss_pred CEECCHHHHHHHHHHHHHC--CCEEEEEECCCCCCCC-CCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCC
Q ss_conf 3877538999999999977--9859999568765557-713667888999999889947898626884306999788544
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHR--GIQSCVLEKKDQLSDS-GFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLK 77 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~--G~~v~i~Er~~~~~~~-g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~ 77 (380)
+|||||+|||++|..|.+. +.+|.|+|+.+.+... -+..+.+. ..++-++.+... ......++..+...
T Consensus 3 iIiG~G~AGLsLA~~L~~~~~~~~Vllid~~~~~~~~~d~tW~fW~------~~~~~~~~~~~~--~W~~~~v~~~~~~~ 74 (374)
T pfam05834 3 VIVGAGLAGLLLALRLRQARPGLRVLLIDAGPGPPFPNNHTWSDEF------EDLGPLAPCVEH--SWPGYEVRFPDGRR 74 (374)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEECCCC------CCCCCHHHHHHC--EECCEEEEECCCCE
T ss_conf 9999529999999999740899819999789888889983854571------787775777645--87967999289974
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC----C--CCCCCCCCCEEEEEEEEECCC
Q ss_conf 3334554323444478247862000134788997320687256421012344----3--211234531035689974367
Q gi|254780168|r 78 ELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP----D--CTQISKINNQKPDLLVGADGL 151 (380)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~----~--~~~~~~~~~~~adlvIgADG~ 151 (380)
. ..+.+|.+|...++.+.+.+.+....+..+ ..+|... + .+..++++..+|++|+.|.|.
T Consensus 75 ~------------l~~~~Y~~i~s~~f~~~~~~~~~~~~~~~~--~~~v~~i~~~~~~~~v~~~~g~~~~a~~V~Dsr~~ 140 (374)
T pfam05834 75 K------------LIGRGYGRVSSDRLHEELLRRCAENGVIRL--NAKVASVDAEPVESLVVLEDGRTIRARLVIDARGA 140 (374)
T ss_pred E------------ECCCCCEEEEHHHHHHHHHHHHHHCCCEEE--CCEEEEEECCCCCEEEEECCCCEEEEEEEEECCCC
T ss_conf 7------------668870798889999999999865796999--13778975378705999269958744499947876
Q ss_pred CCCCHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCE-EEEEC---C-CC--EEEEEEECCCCEEEEEEEECCCCCCC
Q ss_conf 663121128533443110157860365446554566760-89976---5-40--57888404897379999845774211
Q gi|254780168|r 152 NSNIRHYIDTQPITFSGDVVLRCLIPQNNAPEFIDFQSV-NIFFG---P-DS--HLVTYPLREDNTINMVFVSSKHTLKD 224 (380)
Q Consensus 152 ~S~vR~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~---~-~~--~~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (380)
.+.-... .-+ |.++.-.+....... +.+.. .|-+. + ++ .+.++|.++++..--.....+.+.
T Consensus 141 ~~~~~~~-----~l~--Q~F~G~~I~t~~~~f--d~~~~~lMDfr~~q~~~g~~F~YvLP~s~~~aLVE~T~fs~~~~-- 209 (374)
T pfam05834 141 SPSGALT-----VGY--QTFYGVEVEVDNPPH--DPDVPVIMDARVPQPAKGYRFLYVLPLSPTRLLIEDTCYADGPA-- 209 (374)
T ss_pred CCCCCCC-----CEE--EEEEEEEEEECCCCC--CCCEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCC--
T ss_conf 6778888-----614--899999999689978--88725999832666667618999975489859999875336778--
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHHCCCHHHHH
Q ss_conf 12345532223898986321280222011002332101233465421014687112111112448303342013036799
Q gi|254780168|r 225 ISFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAY 304 (380)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~ 304 (380)
...+..++.+.+.+....-...++++ .+.-..|+......+. ...|++-+|.||+.++|.+|...+.+.+.|-
T Consensus 210 ----l~~~~~~~~i~~yl~~~gi~~~~i~~--~E~GviPm~~~~~~~~-~~~~ii~iG~agG~~~psTGYsf~~~~~~a~ 282 (374)
T pfam05834 210 ----LPFDALKQRLMDYARALGWRILEVER--EEQGVIPMTLGGDLPA-TWQKVLRIGAAAGLVHPSTGYSVPRALALAP 282 (374)
T ss_pred ----CCHHHHHHHHHHHHHHCCCCCCEEEE--EEEEEECCCCCCCCCC-CCCCCCCEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf ----99999999999999972998523775--4889988866888655-6877622232437888870362999999899
Q ss_pred HHHHHHCCCC
Q ss_conf 9999852489
Q gi|254780168|r 305 ALSYLLGKKT 314 (380)
Q Consensus 305 ~La~~L~~~~ 314 (380)
.|++.|....
T Consensus 283 ~ia~~l~~~~ 292 (374)
T pfam05834 283 AIAAILRLSS 292 (374)
T ss_pred HHHHHHHCCC
T ss_conf 9998764278
No 56
>pfam08491 SE Squalene epoxidase. This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway. Putative transmembrane regions are found to the protein's C-terminus.
Probab=99.64 E-value=1.1e-14 Score=119.33 Aligned_cols=207 Identities=17% Similarity=0.221 Sum_probs=136.9
Q ss_pred EEEEEEECCCCCCCHHHCCCCCCCCCCCEEEEEE-CCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCC
Q ss_conf 5689974367663121128533443110157860-365446554566760899765405788840489737999984577
Q gi|254780168|r 142 PDLLVGADGLNSNIRHYIDTQPITFSGDVVLRCL-IPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKH 220 (380)
Q Consensus 142 adlvIgADG~~S~vR~~l~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (380)
|.++|.|||..|+.||.+....+... +.+.|. +.... ....+..+.++++...+.+|++..++....+-+..++
T Consensus 2 ApLtvv~DG~~S~fRk~l~~~~~~v~--S~FvGl~l~~~~---lp~p~hGhViL~~~~PvL~YqIs~~etR~Lvdv~~~~ 76 (276)
T pfam08491 2 APLTIVCDGCFSKFRKSLSDNKVEVG--SYFVGLILKNAD---LPAPNHGHVILGKPSPILLYQISSTETRILCDYPGPK 76 (276)
T ss_pred CCEEEEECCCCHHHHHHHCCCCCCEE--EEEEEEEECCCC---CCCCCCEEEEECCCCCEEEEECCCCCEEEEEECCCCC
T ss_conf 98699816850587887348999630--168999971788---9998804899669986899972898368999537888
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHH-CCCCCCEEEE-CCC--CCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHH
Q ss_conf 421112345532223898986321-2802220110-023--321012334654210146871121111124483033420
Q gi|254780168|r 221 TLKDISFLKRSEIHKEWFVKHLTN-WHQEIIQLIL-QIN--DTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGA 296 (380)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~-~~~--~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~ 296 (380)
... . . ....++++.+.+.. ..+.+++.+. ..+ ..+..|-...+..+ ..+.+++|+|||..--||..|-||
T Consensus 77 lPs-~---~-ng~~~~yl~~~v~P~lP~~lr~~f~~Al~~g~iRsMPn~~lp~~~-~~~~G~illGDA~NmRHPLTGgGM 150 (276)
T pfam08491 77 LPS-I---A-NGELKEYLKTSVAPQIPKELRPSFLAALDEGKIRSMPNSFLPASK-NRKKGLILLGDALNMRHPLTGGGM 150 (276)
T ss_pred CCC-C---C-CCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCEEEEEHHHCCCCCCCCCCE
T ss_conf 998-6---6-416899999714667988899999999965992447502188876-799878997111058898557666
Q ss_pred CCCHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHH
Q ss_conf 13036799999985248-------989999999998679999999999998898367898-9999999998
Q gi|254780168|r 297 NMAIEDAYALSYLLGKK-------TIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRP-ASLFRNAGLR 359 (380)
Q Consensus 297 n~al~Da~~La~~L~~~-------~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~~~-~~~~r~~~l~ 359 (380)
..|+.|+..|.++|+.- .+.++++.|..+|++-+.-|...|.....+|..+.. ++.+|..-++
T Consensus 151 TVal~Dvv~L~~lL~~~~dl~d~~~v~~~l~~F~~~Rk~~~s~IN~LA~ALY~lF~a~~~~l~~Lr~gcF~ 221 (276)
T pfam08491 151 TVALNDIVLLRKLLGPLRDLSDREKVSKVLKSFHWLRKPYDAVINTLSIALYSLFAADSDELKALRKGCFD 221 (276)
T ss_pred EEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 76420899999863778885217999999999988625540879999999999984897799999999999
No 57
>TIGR01790 carotene-cycl lycopene cyclase family protein; InterPro: IPR010108 Carotenoids have important functions in photosynthesis, nutrition, and protection against oxidative damage, and are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. The final steps in the biosynthesis of carotenoids usually involve the cyclization of lycopene by one of two pathways: the formation of a beta ring by beta-cyclase, or an epsilon ring by epsilon-cyclase. Epsilon-cyclase adds only one ring, forming the monocyclic delta-carotene, whereas beta-cyclase introduces a ring at both ends of lycopene to form the bicyclic beta-carotene . Both enzymes show high sequence similarities, and may have evolved from the same ancestor . This family includes lycopene beta-and epsilion-cyclases, which are involved in the biosynthesis of carotenoids in bacteria and plants, and the related capsanthin capsorubin synthase (Ccs) from plants, which converts antheraxanthin or violaxanthin into capsanthin or capsorubin by a mechanism similar to lycopene cyclization.; GO: 0016705 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process.
Probab=99.62 E-value=4.1e-14 Score=115.31 Aligned_cols=304 Identities=16% Similarity=0.195 Sum_probs=168.2
Q ss_pred CEECCHHHHHHHHHHHH--HCCCEEEEEECCCC-CC-CCCCEEEECHHHHHHHHHCC---CHHHHHHCCCCCCCEEEEEC
Q ss_conf 38775389999999999--77985999956876-55-57713667888999999889---94789862688430699978
Q gi|254780168|r 1 MIIGAGISGLTLAASLG--HRGIQSCVLEKKDQ-LS-DSGFGIQISPNASRILKRIG---ILDQLEDIWIEPEDFVFRSG 73 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~--~~G~~v~i~Er~~~-~~-~~g~gi~l~p~~~~~L~~lG---i~~~~~~~~~~~~~~~~~~~ 73 (380)
|||||||||++.|+.|+ +.|++|.+||.++. .. +.-+|+-. .-|+.+| +.+-+. ....+..-+.+
T Consensus 3 ~ViGgGpAG~aiA~~l~~a~~gL~V~~i~p~p~f~~~~~tyg~w~-----~dl~~~~hawl~~l~~---~~W~~~~~y~~ 74 (419)
T TIGR01790 3 IVIGGGPAGLAIALELADARPGLRVQLIEPAPPFLPGNNTYGVWD-----DDLSDLGHAWLADLVE---HRWSDAYEYRF 74 (419)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC-----CCHHHHHHHHHHHHHC---CCCCCEEEECC
T ss_conf 887477578999999997505871898678887677687442122-----2232789999998841---63898068838
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECC--CC----CCCCCCCCCCCEEEEEEEE
Q ss_conf 85443334554323444478247862000134788997320687256421012--34----4321123453103568997
Q gi|254780168|r 74 STLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHI--TH----PDCTQISKINNQKPDLLVG 147 (380)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v--~~----~~~~~~~~~~~~~adlvIg 147 (380)
.+ .....+.+|..+.|..|.+.|.++|.+..++.+...+.+ +. ...+.-.++.++.|.+||.
T Consensus 75 ~~------------~~~~L~~~Y~~~~~~~L~~~l~~~~~~~sG~~~~~~ka~~~~~~~~~~~~v~~~~g~~i~Ar~V~D 142 (419)
T TIGR01790 75 PE------------EPIKLGRAYGSVDRAQLHEELLQKCPEGSGVLWLEAKAIKVEADAVSLSLVECAGGQRIQARLVID 142 (419)
T ss_pred CC------------CCHHCCCCCEEECHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCEEECCCCEEEEEEEEEE
T ss_conf 73------------430105665000158999999986200376133013566665440551114428973784007883
Q ss_pred ECCCCC--CCHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEE----------CCCC-----EEEEEEECCCCE
Q ss_conf 436766--31211285334431101578603654465545667608997----------6540-----578884048973
Q gi|254780168|r 148 ADGLNS--NIRHYIDTQPITFSGDVVLRCLIPQNNAPEFIDFQSVNIFF----------GPDS-----HLVTYPLREDNT 210 (380)
Q Consensus 148 ADG~~S--~vR~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----------~~~~-----~~~~~p~~~~~~ 210 (380)
|-|..+ .+-......... -|++|-..+...+.|..++..-+.-|- .... .+..+|++++..
T Consensus 143 a~G~~~G~l~~~~~~~~~~g--~Q~ayG~~~rl~~~P~~~~~~V~MD~r~~~~~~~~~l~~~~sripTFlYampL~~~~~ 220 (419)
T TIGR01790 143 ARGFKPGKLVQYEKASLAVG--YQAAYGVEVRLSEPPHGPSSMVIMDYRVDQLKDAPELKGYRSRIPTFLYAMPLSSDRV 220 (419)
T ss_pred CCCCCCCCEECCCCCCCCCE--EEEEEEEEEEEECCCCCCCCCEEECCCHHHHCCCCCCCCCCCCCCCEEEECCCCCCEE
T ss_conf 25777651011256676421--2131327788724787999865831152523578532355666761566305899647
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH----CCCCCCEEEECCCCCCCCCCCCC-CCCCCCCCCC---EEECH
Q ss_conf 7999984577421112345532223898986321----28022201100233210123346-5421014687---11211
Q gi|254780168|r 211 INMVFVSSKHTLKDISFLKRSEIHKEWFVKHLTN----WHQEIIQLILQINDTHLYPLFEC-ECKHWHNKKN---AVLIG 282 (380)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~l~~~-~~~~~~~~~r---v~LiG 282 (380)
+ .+|-.....+....+.+.+++.. ..-.+.++++ ++...+|+.-. +..-++...+ |+.+|
T Consensus 221 f----------~EeT~l~~~p~l~~~~L~~rl~~rl~~~G~~~~~i~~--eE~~~lP~~~~~p~sa~~~~q~~PGv~~~G 288 (419)
T TIGR01790 221 F----------IEETSLAARPALPRDRLKQRLLARLAAQGWQVKEIEE--EEQGLLPVNLPLPSSAYVLEQRIPGVVAFG 288 (419)
T ss_pred E----------EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCHHH--CCHHHCCCCCCCCCCCCCCCCCCCCHHHCC
T ss_conf 8----------8851002689989899999999999846882340032--001111435578852220689987033100
Q ss_pred HHCCCCCCCHHHHHCCCHHHHHHHHHHHCC----C-------------CHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 111244830334201303679999998524----8-------------9899999999986799999999999
Q gi|254780168|r 283 DAAHTLLPFAAQGANMAIEDAYALSYLLGK----K-------------TIPAAISAYQKVRAVRVKRIRYRTK 338 (380)
Q Consensus 283 DAAH~~~P~~GqG~n~al~Da~~La~~L~~----~-------------~~~~~l~~Y~~~R~~~~~~i~~~s~ 338 (380)
=||--+||.+|--+..|+++|-.||..+.+ . ...++.+.|-..++.|.+.+....+
T Consensus 289 ~aAg~vHP~TGY~v~~al~~Ap~~A~~~A~~L~~~~S~~mltsss~~~~~~~~w~~lw~~~~~r~r~~~~lg~ 361 (419)
T TIGR01790 289 AAAGMVHPATGYSVARALSEAPKLAAAIAQALALSSSKSMLTSSSIAELATAAWDGLWPTERRRQRYFRLLGR 361 (419)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHCCHHHHHCCEEEHHHH
T ss_conf 1334557751114899999878889999974133332022110244899999998513144666441003568
No 58
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.17 E-value=2.1e-08 Score=76.09 Aligned_cols=195 Identities=10% Similarity=0.047 Sum_probs=86.5
Q ss_pred EECCHHHHHHHHHHHHCCCEEEEEEECCCCC----CCCC-------CCCCCCEEEEEEEEECCCCCC-CHHHCCCCCCCC
Q ss_conf 2000134788997320687256421012344----3211-------234531035689974367663-121128533443
Q gi|254780168|r 99 VKRHTLQKILLNHIQTQPLARLHLSTHITHP----DCTQ-------ISKINNQKPDLLVGADGLNSN-IRHYIDTQPITF 166 (380)
Q Consensus 99 i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~----~~~~-------~~~~~~~~adlvIgADG~~S~-vR~~l~~~~~~~ 166 (380)
++-..+...|.+.+++.++ ++..+++|+.. +.+. .++..+.++|-||-|=|++|+ +-+.++...+-+
T Consensus 194 ~dp~~~~~al~~~~~~~G~-~~~~~~~V~~i~~~~~~v~v~~~~~~~~~~~~~~ad~vViAaGawS~~L~~~lG~~~Pl~ 272 (410)
T PRK12409 194 GDIHKFTTGLAAACARLGV-QFRYGQEVTDIKTDGDRVVLTCQDSSQGDSRTLEFDGVVVCAGVGSRQLAAMLGDRVNVY 272 (410)
T ss_pred ECHHHHHHHHHHHHHHCCC-EEECCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEEEEECCCCCCHHHHHHCCCCCCEE
T ss_conf 3589999999999997799-998785589999809989999646423355258830499876666376686538865236
Q ss_pred C--CCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 1--10157860365446554566760899765405788840489737999984577421112345532223898986321
Q gi|254780168|r 167 S--GDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKRSEIHKEWFVKHLTN 244 (380)
Q Consensus 167 ~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (380)
. |+.. .+...+.......... ..+..+..++..|..+++. .+........ .+..... ...+.+.+....
T Consensus 273 p~rGy~l---~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~g~~~l-rv~gt~E~~g---~d~~~~~-~~~~~l~~~a~~ 343 (410)
T PRK12409 273 PVKGYSI---TVNLDDEASRAAAPWV-SLLDESAKIVTSRLGADRF-RVAGTAEFNG---YNRDIRA-DRIRPLVDWVRR 343 (410)
T ss_pred ECCCEEE---EEECCCCCCCCCCCEE-EEECCCCEEEEEECCCCEE-EECCCEEECC---CCCCCCH-HHHHHHHHHHHH
T ss_conf 4267589---9855875433468727-8972796699862579848-9626402258---8899898-999999999999
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHCC----CCCCCHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 280222011002332101233465421014687112111112----448303342013036799999985248
Q gi|254780168|r 245 WHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAH----TLLPFAAQGANMAIEDAYALSYLLGKK 313 (380)
Q Consensus 245 ~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~rv~LiGDAAH----~~~P~~GqG~n~al~Da~~La~~L~~~ 313 (380)
+.|.+... .. ..|-=+ ++. +.+++=+||-+.| .-.=+.+.|+.+|=--+..+|+++.+.
T Consensus 344 ~~P~l~~~--~~---~~W~G~-RP~----tpD~lPvIG~~~~~gl~~a~GH~~~G~~lap~tg~lvA~li~g~ 406 (410)
T PRK12409 344 NFPGVSTR--RV---VPWAGL-RPM----MPNMMPRVGRGRRPGVFYNTGHGHLGWTLSAATADLVAQVVQQK 406 (410)
T ss_pred HCCCCCCC--CC---EEEEEE-CCC----CCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 78897726--65---062545-068----99988982878999999997881257789999999999997589
No 59
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.11 E-value=2.1e-09 Score=83.01 Aligned_cols=32 Identities=25% Similarity=0.499 Sum_probs=29.5
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 38775389999999999779859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
+|||||++|+++|+.|+++|++|+|+||.+.+
T Consensus 4 vIIGaGi~G~stA~~La~~G~~V~vler~~~~ 35 (416)
T PRK00711 4 VVLGSGVVGVTSAWYLARAGHEVTVIDRQPGP 35 (416)
T ss_pred EEECCHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 99994499999999999689968999699998
No 60
>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed
Probab=99.11 E-value=1.7e-08 Score=76.76 Aligned_cols=33 Identities=39% Similarity=0.617 Sum_probs=30.5
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
+|||||++|+++|..|+++|++|+|||+.+.+.
T Consensus 260 aVIGAGIAGas~A~~LA~rG~~VtVlDr~~~~A 292 (660)
T PRK01747 260 AIIGGGIAGAALALALARRGWQVTLYEADEAPA 292 (660)
T ss_pred EEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 998938999999999997899689994798756
No 61
>TIGR01789 lycopene_cycl lycopene cyclase; InterPro: IPR008461 This family consists of several bacterial Lycopene cyclase (CrtY) proteins. Lycopene cyclase is a key enzyme which converts the acyclic carotenoid lycopene into the cyclic carotenoid beta-carotene .; GO: 0045436 lycopene beta cyclase activity, 0016117 carotenoid biosynthetic process.
Probab=99.09 E-value=2.8e-09 Score=82.17 Aligned_cols=301 Identities=16% Similarity=0.256 Sum_probs=159.1
Q ss_pred CEECCHHHHHHHHHHHHHC--CCEEEEEECCCCCCC-C---CCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECC
Q ss_conf 3877538999999999977--985999956876555-7---713667888999999889947898626884306999788
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHR--GIQSCVLEKKDQLSD-S---GFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGS 74 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~--G~~v~i~Er~~~~~~-~---g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~ 74 (380)
+|||||+||+..|+.|.++ .++|.|||..+...= . -.+-.|+...-+.|- .+..+++.
T Consensus 3 i~vGgGLAggLIALrL~~arPd~Ri~~IEa~~~igGNHtWSffd~Dls~~qhawla----------------~lv~~~Wp 66 (392)
T TIGR01789 3 IVVGGGLAGGLIALRLQDARPDLRILVIEAAASIGGNHTWSFFDADLSDAQHAWLA----------------DLVVYDWP 66 (392)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEECCCCCHHHHHHHH----------------HHCCCCCC
T ss_conf 88727335789999875259872899984377668875301003666743577765----------------34013288
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECC--CCCCCCCCC-----CCCCEEEEEEEE
Q ss_conf 5443334554323444478247862000134788997320687256421012--344321123-----453103568997
Q gi|254780168|r 75 TLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHI--THPDCTQIS-----KINNQKPDLLVG 147 (380)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v--~~~~~~~~~-----~~~~~~adlvIg 147 (380)
++.++ +|+.. ..+...-|..+-=.+|.+.|.++..+..+. .+.++ .+.+.|.+. .+++++|.-||.
T Consensus 67 gGYeV-RFp~~---rrkL~taY~S~tStrf~e~l~q~fpe~s~~---~~r~a~~~~Ad~V~L~PsqyG~g~~i~A~~VID 139 (392)
T TIGR01789 67 GGYEV-RFPKR---RRKLKTAYLSMTSTRFREELEQKFPERSVL---LDRKAVEVDADAVDLEPSQYGNGRVIRARAVID 139 (392)
T ss_pred CCCEE-CCHHH---HHHHHCCCCCCHHHHHHHHHHHHCCCCEEE---ECCEEEEEEECEEEECCCCCCCCCEEEEEEEEE
T ss_conf 97133-35555---433210221100177899999876872056---401567766075662654468962676402772
Q ss_pred ECCCCCCCHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEE-EEEECCCCEEEEEEEECCCC----C
Q ss_conf 436766312112853344311015786036544655456676089976540578-88404897379999845774----2
Q gi|254780168|r 148 ADGLNSNIRHYIDTQPITFSGDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLV-TYPLREDNTINMVFVSSKHT----L 222 (380)
Q Consensus 148 ADG~~S~vR~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~----~ 222 (380)
|=|-.-.- .|...--.|-|.- +| -..|+.++.+-+. +..+- .-|-.+|+.|.||++.|-+. .
T Consensus 140 ~Rg~~P~~--~L~~GfQ~FlG~e-~R-----L~~PHGl~~PiiM-----DATVdQ~~PhGnGGgYRFVY~LPL~~~~llI 206 (392)
T TIGR01789 140 ARGFKPSA--ALKVGFQVFLGRE-VR-----LAEPHGLESPIIM-----DATVDQSDPHGNGGGYRFVYVLPLDAQELLI 206 (392)
T ss_pred CCCCCCCC--CCCCCHHHHHCCC-HH-----CCCCCCCCCCEEE-----CCCHHHCCCCCCCCCEEEEEECCCCCCEEEE
T ss_conf 58887772--1025323442320-00-----1578888887042-----5624211778798740278864798750136
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCC----CCCCEEEECCCCCCCCCCCC-CCCCCCCCC---CCEEECHHHCCCCCCCHHH
Q ss_conf 111234553222389898632128----02220110023321012334-654210146---8711211111244830334
Q gi|254780168|r 223 KDISFLKRSEIHKEWFVKHLTNWH----QEIIQLILQINDTHLYPLFE-CECKHWHNK---KNAVLIGDAAHTLLPFAAQ 294 (380)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~l~~-~~~~~~~~~---~rv~LiGDAAH~~~P~~Gq 294 (380)
+|.-+.+++.+.++.+..++.+.. ..+.+++.. +--..|+.. -...-++.+ .++..+|=+|--+||.+|-
T Consensus 207 EDTyY~D~~~L~~~~l~qrI~~YA~a~gW~~~t~~r~--EqGvLPv~l~GD~sa~~~~~~~PG~a~~Glragl~HP~TgY 284 (392)
T TIGR01789 207 EDTYYADDAELDEEALRQRIDDYALAKGWQLATLVRE--EQGVLPVLLAGDSSAYVDKVDIPGLAIAGLRAGLVHPTTGY 284 (392)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH--HCCCCCEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCCCC
T ss_conf 6300058883878988547899986428610126765--35866230158730112477889740135530244774135
Q ss_pred HHCCCHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 20130367999999852------4898999999999867999999999999
Q gi|254780168|r 295 GANMAIEDAYALSYLLG------KKTIPAAISAYQKVRAVRVKRIRYRTKL 339 (380)
Q Consensus 295 G~n~al~Da~~La~~L~------~~~~~~~l~~Y~~~R~~~~~~i~~~s~~ 339 (380)
-++.|.+-|-.|++... ..++.+.++.|.++++.+........|+
T Consensus 285 slp~AV~~Ad~l~a~~aqrG~lss~~~~~~id~~ar~~W~~~gyyR~LnRm 335 (392)
T TIGR01789 285 SLPVAVEVADALAARDAQRGALSSEDLREAIDSYARERWRKRGYYRLLNRM 335 (392)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 578999999998520100455677899999876555411015507788889
No 62
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.08 E-value=6.7e-09 Score=79.56 Aligned_cols=153 Identities=15% Similarity=0.168 Sum_probs=74.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC--E---E---EE--CHHHHH-HHHHCCCHHHHHHCC-CCC---
Q ss_conf 3877538999999999977985999956876555771--3---6---67--888999-999889947898626-884---
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGF--G---I---QI--SPNASR-ILKRIGILDQLEDIW-IEP--- 65 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~--g---i---~l--~p~~~~-~L~~lGi~~~~~~~~-~~~--- 65 (380)
+|||||++|+++|+.|+++|++|+|+||.......|. + + .. .|.-+. .++...+|+++.+.. ...
T Consensus 7 vVIGaGi~G~s~A~~La~~G~~V~vle~~~~~~~~gss~g~~~~~r~~~~~~~~~~~l~~~s~~~~~~l~~~~g~~~~~~ 86 (377)
T PRK11259 7 IVIGLGSMGSAAGYYLARAGLRVLGIDRFMPPHQQGSSHGDTRIIRHAYGEGPAYVPLVLRAQELWRELERETGEPLFVQ 86 (377)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 99995299999999999789959999289988654667664206676456787789999999999999998749752875
Q ss_pred CCEEEEECCCCC--------------CCCCCCCCC-------CC-CCCCCCE----EEEEECCHHHHHHHHHHHHCCCEE
Q ss_conf 306999788544--------------333455432-------34-4447824----786200013478899732068725
Q gi|254780168|r 66 EDFVFRSGSTLK--------------ELSRFSCKN-------YS-RNNWGGI----YGVVKRHTLQKILLNHIQTQPLAR 119 (380)
Q Consensus 66 ~~~~~~~~~~~~--------------~~~~~~~~~-------~~-~~~~~~~----~~~i~r~~l~~~L~~~~~~~~~~~ 119 (380)
.+..+....... ....++..+ .. ....... ...++-..+.+.|.+.+++.+. +
T Consensus 87 ~G~l~~a~~~~~~~~~~~~~~~~~G~~~e~l~~~e~~~~~P~l~~~~~~~g~~~p~~G~v~p~~~~~al~~~a~~~G~-~ 165 (377)
T PRK11259 87 TGVLNLGPADSAFLANVARSARQHGLPHEVLDAAEIRRRWPEFRVPDNYIALFEPDSGFLRPELAIKAHLRLAREAGA-E 165 (377)
T ss_pred ECCEEECCCHHHHHHHHHHHHHHCCCCCEEECHHHHHHHCCCCCCCCCEEEEEECCCCEECHHHHHHHHHHHHHHCCC-C
T ss_conf 074897387799999999999976998099589999986776578987799995898267499999999999997499-6
Q ss_pred EEEEECCCCC----CCCCCC-CCCCEEEEEEEEECCCCCC
Q ss_conf 6421012344----321123-4531035689974367663
Q gi|254780168|r 120 LHLSTHITHP----DCTQIS-KINNQKPDLLVGADGLNSN 154 (380)
Q Consensus 120 ~~~~~~v~~~----~~~~~~-~~~~~~adlvIgADG~~S~ 154 (380)
+..++.|+.. +.+.+. +..+++||.||-|-|++|.
T Consensus 166 i~~~~~V~~i~~~~~~v~V~T~~G~i~A~~VV~AaGaws~ 205 (377)
T PRK11259 166 LLFNEPVTAIEHDDDGVTVTTADGTYSAKKLVVSAGTWVK 205 (377)
T ss_pred EEECEEEEEEEECCCEEEEEECCCEEECCEEEECCCHHHH
T ss_conf 5813488867874998999808947997979997565178
No 63
>TIGR02352 thiamin_ThiO glycine oxidase ThiO; InterPro: IPR012727 This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as Escherichia coli that instead use tyrosine and the ThiH protein .; GO: 0016491 oxidoreductase activity, 0050660 FAD binding.
Probab=98.94 E-value=1.2e-07 Score=70.94 Aligned_cols=237 Identities=16% Similarity=0.220 Sum_probs=110.2
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCC----CCCEEEECH-------------HHHHHHHHCCCHHHH----H
Q ss_conf 3877538999999999977985999956876555----771366788-------------899999988994789----8
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSD----SGFGIQISP-------------NASRILKRIGILDQL----E 59 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~----~g~gi~l~p-------------~~~~~L~~lGi~~~~----~ 59 (380)
+|||||+.||++|..|++.|++|+|+|+++.... ..+|. |.| -+++-++ +|+++ .
T Consensus 2 ~ViGGGvIGL~~A~~L~~~G~~V~l~~~~~~~g~~AS~~AaGM-LAP~aE~~~~~~~~f~L~~~S~~---~yp~~~~~l~ 77 (357)
T TIGR02352 2 LVIGGGVIGLSVAVELAERGHSVTLLDRDPTVGGGASWAAAGM-LAPVAEVEYAEDPLFDLALESLR---LYPEWLEALK 77 (357)
T ss_pred EEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH-HHHHCCCCCCCCHHHHHHHHHHH---HHHHHHHHHH
T ss_conf 7845318789999999974993899965860456778866433-24326674676747899999999---7599999987
Q ss_pred HC-CCC----CCCEEEEEC--C--------------CCCCCCCCCCC-------CCCCCCCCCEE----EEEECCHHHHH
Q ss_conf 62-688----430699978--8--------------54433345543-------23444478247----86200013478
Q gi|254780168|r 60 DI-WIE----PEDFVFRSG--S--------------TLKELSRFSCK-------NYSRNNWGGIY----GVVKRHTLQKI 107 (380)
Q Consensus 60 ~~-~~~----~~~~~~~~~--~--------------~~~~~~~~~~~-------~~~~~~~~~~~----~~i~r~~l~~~ 107 (380)
.. +.+ ..++...-. . ++.....++.. ....+..+..+ ..|.-..|.++
T Consensus 78 ~~tg~~~~y~~~G~l~vA~~~~d~~~l~~~~~~~~~~G~~~~~l~~~~~r~~EP~L~~~~~~a~~~p~d~~v~~r~l~~A 157 (357)
T TIGR02352 78 ELTGLDTGYRQCGTLVVAFDEDDVEKLRQLADLQSATGMELEWLSGRALRRLEPYLSPGIRGAVYYPDDAHVDPRELLKA 157 (357)
T ss_pred HCCCCCCEEECCCEEEEECCCCHHHHHHHHHHHHHHHCCEEEECCHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHH
T ss_conf 31799512740525894078711688899999987528604650779999844252422033457486523371899999
Q ss_pred HHHHHHHCCCEEEEEEECCCCCCC----CC--CCCCCCEEEEEEEEECCCCCCCHHH-CCCCCCCCCCCEEEEEECCCCC
Q ss_conf 899732068725642101234432----11--2345310356899743676631211-2853344311015786036544
Q gi|254780168|r 108 LLNHIQTQPLARLHLSTHITHPDC----TQ--ISKINNQKPDLLVGADGLNSNIRHY-IDTQPITFSGDVVLRCLIPQNN 180 (380)
Q Consensus 108 L~~~~~~~~~~~~~~~~~v~~~~~----~~--~~~~~~~~adlvIgADG~~S~vR~~-l~~~~~~~~~~~~~~~~i~~~~ 180 (380)
|.+.|+..++ ++...+.|...+. +. .+......+|-||-|-|+.|.-.-- +...-..-.|+. .+..++...
T Consensus 158 L~~~~~~lGv-~i~~~~~v~~~~~~~~~~~~~~~~~~~~~ad~vV~A~G~wa~~l~~p~~~~~rpV~G~~-l~~~~~~~~ 235 (357)
T TIGR02352 158 LVKALEKLGV-EIIEEVEVQEIEARGEKVTAVVTSSGDVQADQVVLAAGAWAGELLGPGNLPLRPVKGQM-LRLEVPATL 235 (357)
T ss_pred HHHHHHHCCC-EEEECCCEEEEECCCCEEEEECCCCCCEECCEEEEECCCCHHHHHCCCCCCCCCCCEEE-EEEEEECCC
T ss_conf 9999985694-79862533564326766988528854265574799357333443010102556534058-998640766
Q ss_pred CCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCE
Q ss_conf 65545667608997654057888404897379999845774211123455322238989863212802220
Q gi|254780168|r 181 APEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKRSEIHKEWFVKHLTNWHQEIIQ 251 (380)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (380)
.+ .....+.. +-++.++.+.|=.+|+ +-+..++.+..+. .....+. .+.+++.-....|-+.+
T Consensus 236 ~~--~~~~~~r~-~v~~~~~YivPR~~G~-l~vGAT~~~~~~~---~~~~~~g-~~~Ll~~A~~~~Pal~E 298 (357)
T TIGR02352 236 VP--LLNRPVRA-VVYGRRVYIVPRRDGR-LVVGATSEEAGFD---TTVTLEG-IKELLRDAYTILPALKE 298 (357)
T ss_pred CC--CCCCCEEE-EECCCCEEEEECCCCE-EEEEEECCCCCCC---CCCCHHH-HHHHHHHHHHHCCCCCC
T ss_conf 55--57744256-4138834587758975-8998632347889---9877789-99999878744350017
No 64
>pfam01946 Thi4 Thi4 family. This family includes a putative thiamine biosynthetic enzyme.
Probab=98.82 E-value=6.8e-08 Score=72.66 Aligned_cols=122 Identities=22% Similarity=0.308 Sum_probs=74.2
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC--CCE-----EEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEEC
Q ss_conf 38775389999999999779859999568765557--713-----66788899999988994789862688430699978
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDS--GFG-----IQISPNASRILKRIGILDQLEDIWIEPEDFVFRSG 73 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~--g~g-----i~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~ 73 (380)
+||||||+||++|..|+++|++|.||||+..+.-- +.| +.++..+.++|+++|+- .+..
T Consensus 21 ~IVGaGpsGL~aA~~LAk~g~KV~i~E~~ls~GGG~WgGGmlfn~ivv~~~a~~iLde~gi~---------y~~~----- 86 (229)
T pfam01946 21 VIVGAGPSGLTAAYYLAKKGLKVAIIERSLSPGGGAWGGGMLFSAMVVRKPADEFLDEFGIR---------YEDE----- 86 (229)
T ss_pred EEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCHHHHHHHHCCCC---------CEEC-----
T ss_conf 99887817999999998789859999645268886202012256337641389999974995---------2764-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC----CCC-------------CC-C
Q ss_conf 85443334554323444478247862000134788997320687256421012344----321-------------12-3
Q gi|254780168|r 74 STLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP----DCT-------------QI-S 135 (380)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~----~~~-------------~~-~ 135 (380)
. ..+++.+-..+...|..++-+ .+.++...+.|++. +.+ .. .
T Consensus 87 ~-------------------~g~~v~ds~~~~s~L~s~a~~-aGakifn~~~VEDli~r~~rV~GvViNWt~V~~~g~hv 146 (229)
T pfam01946 87 G-------------------DYVVVADAAEFTSTLASKALQ-PGVKIFNATSVEDLIIRDNRVAGVVTNWTLVEMAGLHM 146 (229)
T ss_pred C-------------------CCEEEECHHHHHHHHHHHHHC-CCCEEEECCEEEEEEEECCCEEEEEEEEEHHHHCCCCC
T ss_conf 7-------------------966994499999999999767-89899824488889996792799998411444436755
Q ss_pred CCCCEEEEEEEEECCCCCCCH
Q ss_conf 453103568997436766312
Q gi|254780168|r 136 KINNQKPDLLVGADGLNSNIR 156 (380)
Q Consensus 136 ~~~~~~adlvIgADG~~S~vR 156 (380)
|-..+++++||.|.|-...+-
T Consensus 147 DP~~i~ak~VvDaTGHda~v~ 167 (229)
T pfam01946 147 DPLTIRAKAVVDATGHDAPFG 167 (229)
T ss_pred CCCCCCCEEEEECCCCCHHHH
T ss_conf 842110017986688974898
No 65
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.80 E-value=4.1e-08 Score=74.14 Aligned_cols=125 Identities=22% Similarity=0.258 Sum_probs=72.4
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC--CCE-----EEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEEC
Q ss_conf 38775389999999999779859999568765557--713-----66788899999988994789862688430699978
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDS--GFG-----IQISPNASRILKRIGILDQLEDIWIEPEDFVFRSG 73 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~--g~g-----i~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~ 73 (380)
+||||||+||++|..|+++|++|.||||+-.+.-- +.| +.++..+.++|+++|+ +.+..
T Consensus 29 vIVGaGpsGLtAAy~LAk~g~Kv~i~E~~ls~GGG~WgGGmlf~~iVv~~~a~~iLde~gi---------~y~~~----- 94 (257)
T PRK04176 29 AIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGIWGGGMLFNKIVVQEEADEILDEFGI---------RYKEV----- 94 (257)
T ss_pred EEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHCCHHHHCCHHHHHHHHCCC---------CCEEC-----
T ss_conf 9988882799999999868965999971346888631300013345400537999998499---------73335-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCCCCC---C----------------C
Q ss_conf 85443334554323444478247862000134788997320687256421012344321---1----------------2
Q gi|254780168|r 74 STLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHPDCT---Q----------------I 134 (380)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~~~~---~----------------~ 134 (380)
+..+++.+-..+-..|...+-+ .++++...+.|++.-.. . -
T Consensus 95 -------------------~~g~~v~d~~~~~s~L~~~a~~-aGakifn~~~VEDli~r~~~rV~GvV~NWt~V~~~glh 154 (257)
T PRK04176 95 -------------------EDGLYVADSVEAAAKLAAGAID-AGAKIFNGVSVEDVIIREDGRVAGVVINWTPVEMAGLH 154 (257)
T ss_pred -------------------CCCEEEECHHHHHHHHHHHHHH-CCCEEEECCEEEEEEEECCCCEEEEEECCHHHHHHCCC
T ss_conf -------------------8963995089999999999974-79889823044215661288178999625775640355
Q ss_pred CCCCCEEEEEEEEECCCCCCCHHHC
Q ss_conf 3453103568997436766312112
Q gi|254780168|r 135 SKINNQKPDLLVGADGLNSNIRHYI 159 (380)
Q Consensus 135 ~~~~~~~adlvIgADG~~S~vR~~l 159 (380)
.|-..++|++||.|.|-...+-+.+
T Consensus 155 vDP~~i~ak~VvdaTGHda~v~~~~ 179 (257)
T PRK04176 155 VDPLTIEAKAVVDATGHDAEVVSVL 179 (257)
T ss_pred CCCCEECCCEEEECCCCCHHHHHHH
T ss_conf 5852011368998889860899999
No 66
>PRK11728 hypothetical protein; Provisional
Probab=98.79 E-value=5.1e-08 Score=73.50 Aligned_cols=159 Identities=23% Similarity=0.292 Sum_probs=88.6
Q ss_pred CEECCHHHHHHHHHHHHHC--CCEEEEEECCCCCCC--CC-------CEEEECHHHHHH-HHHCC--CHHHH-HHCCCCC
Q ss_conf 3877538999999999977--985999956876555--77-------136678889999-99889--94789-8626884
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHR--GIQSCVLEKKDQLSD--SG-------FGIQISPNASRI-LKRIG--ILDQL-EDIWIEP 65 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~--G~~v~i~Er~~~~~~--~g-------~gi~l~p~~~~~-L~~lG--i~~~~-~~~~~~~ 65 (380)
+|||||++|+++|..|++. +.+|+|+||.+.+.. .+ .|+...|++++. |...| ++.++ .+.+++.
T Consensus 6 vIIGgGIvG~siA~~Ls~~~~~~~V~vlEke~~~g~~~S~rNSgviHaG~~y~p~slka~l~~~g~~l~~~~~~~~~i~~ 85 (400)
T PRK11728 6 VIIGGGIVGLSTAMQLQDRYPGARIALLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQHGIPY 85 (400)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99996799999999999559998399996899975633532423215643589999999999999999999999859992
Q ss_pred C---C--------------------------EEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCC
Q ss_conf 3---0--------------------------6999788544333455432344447824786200013478899732068
Q gi|254780168|r 66 E---D--------------------------FVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQP 116 (380)
Q Consensus 66 ~---~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~ 116 (380)
. . +...+.+....+ .|.-......+-+....++-..+.+.|.+.++..+
T Consensus 86 ~~~GkliVA~~~~e~~~L~~l~~~~~~ngv~~~~l~~~ei~~~--eP~v~~~~al~~p~tgivD~~~l~~al~~~a~~~G 163 (400)
T PRK11728 86 EVCGKLLVATSELELERMEALYERAAANGIEVERLDAEELRER--EPNIRGLGAIFVPSTGIVDYRAVAEAMAELIQARG 163 (400)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHH--CCCCCCCCEEECCCCEEECHHHHHHHHHHHHHHCC
T ss_conf 1168699977999999999999999856986289679999986--88654323597687727789999999999999789
Q ss_pred CEEEEEEECCCCCC----CCC--CCCCCCEEEEEEEEECCCCCC-CHHHCCCC
Q ss_conf 72564210123443----211--234531035689974367663-12112853
Q gi|254780168|r 117 LARLHLSTHITHPD----CTQ--ISKINNQKPDLLVGADGLNSN-IRHYIDTQ 162 (380)
Q Consensus 117 ~~~~~~~~~v~~~~----~~~--~~~~~~~~adlvIgADG~~S~-vR~~l~~~ 162 (380)
.++.++++|+..+ ... .+++.+++|++||-|=|.+|- +.+.++..
T Consensus 164 -~~i~~~~~V~~i~~~~~~~~v~t~~~~~i~a~~vINaAGl~Ad~IA~~~G~~ 215 (400)
T PRK11728 164 -GEIRLGAEVTALDEHANGVVVRTSQGGEFEARTLVNCAGLMSDRLAKMLGLE 215 (400)
T ss_pred -CEEEECCEEEEEEEECCEEEEEECCCCEEEEEEEEECCCHHHHHHHHHCCCC
T ss_conf -8999278898999979999999889988997189986665289999970999
No 67
>pfam01266 DAO FAD dependent oxidoreductase. This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Probab=98.76 E-value=8.6e-08 Score=71.95 Aligned_cols=158 Identities=22% Similarity=0.328 Sum_probs=78.0
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCC---CCCEEEECHH-----H---HHH-HHHCCCHHHHH-HCCCCCC-
Q ss_conf 3877538999999999977985999956876555---7713667888-----9---999-99889947898-6268843-
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSD---SGFGIQISPN-----A---SRI-LKRIGILDQLE-DIWIEPE- 66 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~---~g~gi~l~p~-----~---~~~-L~~lGi~~~~~-~~~~~~~- 66 (380)
+|||||++|+++|+.|+++|++|+|+|+...... ...|+ +.+. + .+. .+.+..|+++. ..+....
T Consensus 3 ~IIGaGi~Gls~A~~La~~G~~V~vie~~~~~~gaS~~~~g~-i~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~~ 81 (309)
T pfam01266 3 VVIGGGIVGLSTAYELARRGLSVTLLERGDLASGASGRNAGL-LHPGLRKERAPLLARLALESRDLWRELIEELGIDCDF 81 (309)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCE-ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 999927999999999997899599994999887504240261-6457577861899999899999999998755987564
Q ss_pred ---CEEEEE-CCC-CC--------------CCCCCCCCC-------CCCCCCC----CEEEEEECCHHHHHHHHHHHHCC
Q ss_conf ---069997-885-44--------------333455432-------3444478----24786200013478899732068
Q gi|254780168|r 67 ---DFVFRS-GST-LK--------------ELSRFSCKN-------YSRNNWG----GIYGVVKRHTLQKILLNHIQTQP 116 (380)
Q Consensus 67 ---~~~~~~-~~~-~~--------------~~~~~~~~~-------~~~~~~~----~~~~~i~r~~l~~~L~~~~~~~~ 116 (380)
...+.. ... .. ....++... ......+ .....++-..+.+.|.+.+.+.+
T Consensus 82 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~a~~~~~~~~i~p~~~~~~l~~~~~~~G 161 (309)
T pfam01266 82 RRTGVLVLARDEAELDALRRLAAALRALGLPVELLDAEELRELEPGLSPGIRGGLFYPDGGHVDPARLLRALARAAEALG 161 (309)
T ss_pred EECCEEEEECCHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCCCEEEEEECCCCEECCHHHHHHHHHHHHHCC
T ss_conf 76468999469899999999999999739965994688877646656776148999757837751243679999998779
Q ss_pred CEEEEEEECCCCCC----C--CCCCCCCCEEEEEEEEECCCCCC-CHHHCCC
Q ss_conf 72564210123443----2--11234531035689974367663-1211285
Q gi|254780168|r 117 LARLHLSTHITHPD----C--TQISKINNQKPDLLVGADGLNSN-IRHYIDT 161 (380)
Q Consensus 117 ~~~~~~~~~v~~~~----~--~~~~~~~~~~adlvIgADG~~S~-vR~~l~~ 161 (380)
+++..+++|++.+ . +...++ +++||.||-|-|.+|. +.+.++.
T Consensus 162 -~~i~~~~~V~~i~~~~~~~~v~t~~g-~i~a~~VV~a~G~~s~~l~~~~~~ 211 (309)
T pfam01266 162 -VEILEGTEVTGLEREGGGVTVETADG-EIRADKVVNAAGAWSDELLRLLGL 211 (309)
T ss_pred -CEEECCCEEEEEEEECCEEEEEECCC-EECCCEEEECCCHHHHHHHHHCCC
T ss_conf -69991768999999899999998997-085899999777426888886399
No 68
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.75 E-value=1.6e-08 Score=76.96 Aligned_cols=135 Identities=21% Similarity=0.304 Sum_probs=79.5
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC----CCE-EEECH--HHHHHHHHCC--------------CHHHHH
Q ss_conf 38775389999999999779859999568765557----713-66788--8999999889--------------947898
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDS----GFG-IQISP--NASRILKRIG--------------ILDQLE 59 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~----g~g-i~l~p--~~~~~L~~lG--------------i~~~~~ 59 (380)
+||||||||+++|+.++++|.+|+|||+.+.+.+. |.| -.++. .--++|.+.+ -+|-+.
T Consensus 7 iIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~d~i~ 86 (408)
T COG2081 7 IIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPEDFID 86 (408)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHCCHHHHHH
T ss_conf 99888788999999886469879998058642213685378874332650589999758982067788987279899999
Q ss_pred HCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEE-EECCHHHHHHHHHHHHCCCEEEEEEECCCCCCCC------
Q ss_conf 626884306999788544333455432344447824786-2000134788997320687256421012344321------
Q gi|254780168|r 60 DIWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGV-VKRHTLQKILLNHIQTQPLARLHLSTHITHPDCT------ 132 (380)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~~~~------ 132 (380)
.+.-.++..+.... |..+.. -.-..+.++|..++++.+ ++++..++|...+..
T Consensus 87 --~~e~~Gi~~~e~~~-----------------Gr~Fp~sdkA~~Iv~~ll~~~~~~g-V~i~~~~~v~~v~~~~~~f~l 146 (408)
T COG2081 87 --WVEGLGIALKEEDL-----------------GRMFPDSDKASPIVDALLKELEALG-VTIRTRSRVSSVEKDDSGFRL 146 (408)
T ss_pred --HHHHCCCEEEECCC-----------------CEECCCCCCHHHHHHHHHHHHHHCC-CEEEECCEEEEEEECCCEEEE
T ss_conf --99865971577468-----------------5255786666899999999999759-589814647767633855899
Q ss_pred CCCCCCCEEEEEEEEECCCCCCC
Q ss_conf 12345310356899743676631
Q gi|254780168|r 133 QISKINNQKPDLLVGADGLNSNI 155 (380)
Q Consensus 133 ~~~~~~~~~adlvIgADG~~S~v 155 (380)
...++.+++||-+|-|-|-.|.=
T Consensus 147 ~t~~g~~i~~d~lilAtGG~S~P 169 (408)
T COG2081 147 DTSSGETVKCDSLILATGGKSWP 169 (408)
T ss_pred ECCCCCEEECCEEEEECCCCCCC
T ss_conf 85999889804899922886778
No 69
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.69 E-value=4e-06 Score=60.48 Aligned_cols=155 Identities=22% Similarity=0.251 Sum_probs=75.1
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC-CC---CCEEEECHHH-------HHHH--HHCCCHHHHHHCC-----
Q ss_conf 387753899999999997798599995687655-57---7136678889-------9999--9889947898626-----
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS-DS---GFGIQISPNA-------SRIL--KRIGILDQLEDIW----- 62 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~-~~---g~gi~l~p~~-------~~~L--~~lGi~~~~~~~~----- 62 (380)
+|||||++|+++|+.|++.|.+|+|+|+..... .. .+++ +.+.+ ...+ ..+-+|+++....
T Consensus 8 vIIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g~s~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 86 (387)
T COG0665 8 VIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGRNAGGI-LAPWASPGGELEVRPLADLSLALWRELSEELGTGAG 86 (387)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHH-HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9989869999999999976991999917988767667767777-524235553033433799999999998875376644
Q ss_pred CCC-CCEEEEECCCC------C-C---CCC-------CC---CCCCCC---CC--CCC----EEEEEECCHHHHHHHHHH
Q ss_conf 884-30699978854------4-3---334-------55---432344---44--782----478620001347889973
Q gi|254780168|r 63 IEP-EDFVFRSGSTL------K-E---LSR-------FS---CKNYSR---NN--WGG----IYGVVKRHTLQKILLNHI 112 (380)
Q Consensus 63 ~~~-~~~~~~~~~~~------~-~---~~~-------~~---~~~~~~---~~--~~~----~~~~i~r~~l~~~L~~~~ 112 (380)
... ..+........ . . +.. .. ...... .. .+. ....++-..+.+.|.+.+
T Consensus 87 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~ 166 (387)
T COG0665 87 LRRRGLLDLAAREGLKGLAQLERLAAELEAAGEDAELLDAAEAAELEPALGPDFVCGGLFDPTGGHLDPRLLTRALAAAA 166 (387)
T ss_pred EEEECEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCEEEEECCCCCEECHHHHHHHHHHHH
T ss_conf 56624299884467432566899999998602100118887876637333776433459848883457899999999999
Q ss_pred HHCCCEEEEEEECCCCCCC----CC-CCCCCCEEEEEEEEECCCCCCCH
Q ss_conf 2068725642101234432----11-23453103568997436766312
Q gi|254780168|r 113 QTQPLARLHLSTHITHPDC----TQ-ISKINNQKPDLLVGADGLNSNIR 156 (380)
Q Consensus 113 ~~~~~~~~~~~~~v~~~~~----~~-~~~~~~~~adlvIgADG~~S~vR 156 (380)
.+.+...+...+.+...+. .. .+...+++|+.||-|-|.+|..-
T Consensus 167 ~~~G~~~~~~~~~v~~~~~~~~~~~v~t~~g~~~a~~vv~a~G~~~~~l 215 (387)
T COG0665 167 EELGVVIIEGGTPVTSLERDGRVVGVETDGGTIEADKVVLAAGAWAGEL 215 (387)
T ss_pred HHCCCCEEECCCCEEEEEECCCEEEEEECCCEEECCEEEECCCCCHHHH
T ss_conf 9739918972352467761473589995897098198999999643555
No 70
>TIGR00292 TIGR00292 thiazole biosynthesis enzyme; InterPro: IPR002922 This family includes P32318 from SWISSPROT a putative thiamine biosynthetic enzyme . This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.; GO: 0009228 thiamin biosynthetic process.
Probab=98.68 E-value=2.6e-08 Score=75.47 Aligned_cols=97 Identities=30% Similarity=0.365 Sum_probs=62.4
Q ss_pred CEECCHHHHHHHHHHHHHCC--CEEEEEECCCCCCCC--CCE-----EEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEE
Q ss_conf 38775389999999999779--859999568765557--713-----667888999999889947898626884306999
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRG--IQSCVLEKKDQLSDS--GFG-----IQISPNASRILKRIGILDQLEDIWIEPEDFVFR 71 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G--~~v~i~Er~~~~~~~--g~g-----i~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~ 71 (380)
|||||||+|||+|.+||++| ++|.||||+-.+.=- |.| +.+...+-++|+++|| +....
T Consensus 25 iiVGAGpSGLtAAyylA~~gPDLKv~vlEr~la~GGG~WgGGmlF~~~Vv~~pA~~~L~e~gI---------~~~d~--- 92 (283)
T TIGR00292 25 IIVGAGPSGLTAAYYLAKEGPDLKVVVLERKLAFGGGSWGGGMLFSKIVVEKPAKEILDEFGI---------RYEDE--- 92 (283)
T ss_pred EEECCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEECHHHHHHHHCCC---------CEEEC---
T ss_conf 798789746689999984299806999851102689866422245613651404688886598---------13356---
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf 78854433345543234444782478620001347889973206872564210123443
Q gi|254780168|r 72 SGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHPD 130 (380)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~~ 130 (380)
. ..|.+-+=..+...|..++-+.++.++.....|++.-
T Consensus 93 --~-------------------dg~~Vads~e~~s~l~s~a~~aGn~Ki~~~~~vEDl~ 130 (283)
T TIGR00292 93 --G-------------------DGYVVADSAEFISTLASKALQAGNAKIFNGVSVEDLI 130 (283)
T ss_pred --C-------------------CCEEEEHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEE
T ss_conf --8-------------------8548723676899999998658873143336888778
No 71
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.67 E-value=4.5e-06 Score=60.13 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=27.7
Q ss_pred CEECCHHHHHHHHHHHHHC--CCEEEEEECCC
Q ss_conf 3877538999999999977--98599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHR--GIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~--G~~v~i~Er~~ 30 (380)
+|||||.+||++|+.|+++ |.+|+|+|+..
T Consensus 28 vIIGgG~tGLstA~~L~~~~pg~~VvvLEa~~ 59 (460)
T TIGR03329 28 CIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 99994399999999999748999889994896
No 72
>pfam03486 HI0933_like HI0933-like protein.
Probab=98.66 E-value=6.9e-08 Score=72.60 Aligned_cols=132 Identities=23% Similarity=0.297 Sum_probs=75.0
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC----CCE-EEECHH--HHHH--------------HHHCCCHHH--
Q ss_conf 38775389999999999779859999568765557----713-667888--9999--------------998899478--
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDS----GFG-IQISPN--ASRI--------------LKRIGILDQ-- 57 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~----g~g-i~l~p~--~~~~--------------L~~lGi~~~-- 57 (380)
+||||||+|+++|+.+++.|.+|+|+||.+.+... |.| -.++.+ .-++ |.+++..|-
T Consensus 4 ~VIGgGaaGl~aAi~aa~~g~~V~ilEk~~~~GkKll~tG~GRCN~TN~~~~~~~~~~~~~~~~fl~~~l~~F~~~d~~~ 83 (405)
T pfam03486 4 IVIGGGAAGLMAAISAAKRGRRVLLIEKGKKLGRKILISGGGRCNVTNSVEPDNFLSRYPGNPHFLKSALSRFTPWDFIA 83 (405)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCEECCCCCHHHHHHHCCCCHHHHHHHHHHCCHHHHHH
T ss_conf 99996699999999998689959999589987501588268961407899979998625775799999998489999999
Q ss_pred -HHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCCC----C-
Q ss_conf -9862688430699978854433345543234444782478620001347889973206872564210123443----2-
Q gi|254780168|r 58 -LEDIWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHPD----C- 131 (380)
Q Consensus 58 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~~----~- 131 (380)
++..++ .+...++++. +|. .-.=.++.++|.+.+++.+ +.++.+++|.... +
T Consensus 84 ff~~~Gl-----~~~~e~~Grv---fP~-------------s~~A~~Vl~~L~~~l~~~g-V~i~~~~~V~~I~~~~~~~ 141 (405)
T pfam03486 84 WFEELGV-----PLKEEDHGRL---FPV-------------SDKASDIVDALLNELKELG-VKIRTRTRVLSVEKDDDGR 141 (405)
T ss_pred HHHHCCC-----EEEECCCCEE---ECC-------------CCCHHHHHHHHHHHHHHCC-CEEEECCEEEEEEECCCCE
T ss_conf 9997799-----0597789979---789-------------8986999999999999779-7899588878999759945
Q ss_pred -CCCCCCCCEEEEEEEEECCCCCC
Q ss_conf -11234531035689974367663
Q gi|254780168|r 132 -TQISKINNQKPDLLVGADGLNSN 154 (380)
Q Consensus 132 -~~~~~~~~~~adlvIgADG~~S~ 154 (380)
...++..+++||-||-|-|..|.
T Consensus 142 ~~v~~~~~~~~a~~vIlAtGG~s~ 165 (405)
T pfam03486 142 FRVDTGGEELEADSLVLATGGLSW 165 (405)
T ss_pred EEEEECCCEEEECEEEEECCCCCC
T ss_conf 999948958972789990488665
No 73
>pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase.
Probab=98.63 E-value=3.2e-07 Score=68.07 Aligned_cols=132 Identities=16% Similarity=0.229 Sum_probs=74.0
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHH-CCCCCCCEEEEECCCCCCC
Q ss_conf 387753899999999997798599995687655577136678889999998899478986-2688430699978854433
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED-IWIEPEDFVFRSGSTLKEL 79 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~-~~~~~~~~~~~~~~~~~~~ 79 (380)
-||||||+||++|..|...|+++++|||++.+.-. ..... .... .+...+.+...........
T Consensus 5 AIIGAG~SGL~a~K~lle~G~~~~~FE~~~~iGG~---W~~~~-------------~~~~~~~~~y~sl~~Ntsk~~~~f 68 (532)
T pfam00743 5 AVIGAGVSGLSSIKCCLEEGLEPTCFERSDDIGGL---WRFTE-------------HVEEGRASIYKSVVTNSSKEMSCF 68 (532)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC---CCCCC-------------CCCCCCCCCCCCEEEECCCHHHCC
T ss_conf 99897299999999998779982999779997350---66888-------------878886764897068589005138
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCC-EEEEEEECCCCCCC---------CCC---CCCC--CEEEEE
Q ss_conf 34554323444478247862000134788997320687-25642101234432---------112---3453--103568
Q gi|254780168|r 80 SRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPL-ARLHLSTHITHPDC---------TQI---SKIN--NQKPDL 144 (380)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~-~~~~~~~~v~~~~~---------~~~---~~~~--~~~adl 144 (380)
++++..+ .+ + .-.++.++.+.|.+-++.... ..++++++|+.+.. -.+ .++. +...|.
T Consensus 69 SDfP~P~----~~--p-~f~~~~~v~~YL~~YA~hF~L~~~Irf~t~V~~V~~~~d~~~~g~W~V~~~~~g~~~~~~fD~ 141 (532)
T pfam00743 69 SDFPFPE----DY--P-NFMHNSKFLEYLRMFAKHFDLLKYIQFKTTVCSVTKRPDFSTSGQWEVVTEHEGKQESAVFDA 141 (532)
T ss_pred CCCCCCC----CC--C-CCCCHHHHHHHHHHHHHHCCCCCCEECCCEEEEEEECCCCCCCCEEEEEEEECCEEEEEEEEE
T ss_conf 9998998----78--8-998989999999999998099673765778999997667666861899998589088999779
Q ss_pred EEEECCCCCCC
Q ss_conf 99743676631
Q gi|254780168|r 145 LVGADGLNSNI 155 (380)
Q Consensus 145 vIgADG~~S~v 155 (380)
||.|-|.+|.=
T Consensus 142 ViVctG~~~~P 152 (532)
T pfam00743 142 VMVCTGHHTNP 152 (532)
T ss_pred EEEECCCCCCC
T ss_conf 99946677868
No 74
>KOG2415 consensus
Probab=98.60 E-value=2.1e-06 Score=62.36 Aligned_cols=146 Identities=21% Similarity=0.267 Sum_probs=85.9
Q ss_pred CEECCHHHHHHHHHHHHH------CCCEEEEEECCCCCCC--CCCEEEECHHHHHHHHHCCCHHHHHHCCCC------CC
Q ss_conf 387753899999999997------7985999956876555--771366788899999988994789862688------43
Q gi|254780168|r 1 MIIGAGISGLTLAASLGH------RGIQSCVLEKKDQLSD--SGFGIQISPNASRILKRIGILDQLEDIWIE------PE 66 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~------~G~~v~i~Er~~~~~~--~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~------~~ 66 (380)
+|||||||||++|+.|+| +.++|.|+||..++.- ...+ .|.|.++..| .+.-++.+.+ .+
T Consensus 80 ~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGa-viep~aldEL-----~P~wke~~apl~t~vT~d 153 (621)
T KOG2415 80 VIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGA-VIEPGALDEL-----LPDWKEDGAPLNTPVTSD 153 (621)
T ss_pred EEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEECCE-EECCCHHHHH-----CCCHHHCCCCCCCCCCCC
T ss_conf 9988881567888889988876078368999961231477132130-5065436665-----844121387445422203
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEE---CC--------CC----C--
Q ss_conf 0699978854433345543234444782478620001347889973206872564210---12--------34----4--
Q gi|254780168|r 67 DFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLST---HI--------TH----P-- 129 (380)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~---~v--------~~----~-- 129 (380)
.+.|..++..- .++.. ...++.| .++++-..|.++|-+++++.++ ++.-+. +| .. .
T Consensus 154 ~~~fLt~~~~i---~vPv~-~pm~NhG--NYvv~L~~~v~wLg~kAEe~Gv-EiyPg~aaSevly~edgsVkGiaT~D~G 226 (621)
T KOG2415 154 KFKFLTGKGRI---SVPVP-SPMDNHG--NYVVSLGQLVRWLGEKAEELGV-EIYPGFAASEVLYDEDGSVKGIATNDVG 226 (621)
T ss_pred CEEEECCCCEE---ECCCC-CCCCCCC--CEEEEHHHHHHHHHHHHHHHCC-EECCCCCHHHEEECCCCCEEEEEECCCC
T ss_conf 04454367403---06877-6213678--6798889999998777886171-4325620222367679967657604544
Q ss_pred ---C---CCCCCCCCCEEEEEEEEECCCCCCCHHHC
Q ss_conf ---3---21123453103568997436766312112
Q gi|254780168|r 130 ---D---CTQISKINNQKPDLLVGADGLNSNIRHYI 159 (380)
Q Consensus 130 ---~---~~~~~~~~~~~adlvIgADG~~S~vR~~l 159 (380)
+ ...|+.|-+..|+..|-|.|.+..+-+++
T Consensus 227 I~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi 262 (621)
T KOG2415 227 ISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQI 262 (621)
T ss_pred CCCCCCCCCCCCCCCEECCEEEEEECCCCCHHHHHH
T ss_conf 167898500000231111305897021442458999
No 75
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD; InterPro: IPR014104 Members of this family are encoded by slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. (strain PCC 6803), and close homologues (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyses the first step that is committed to myxoxanthophyll..
Probab=98.59 E-value=4.4e-08 Score=73.93 Aligned_cols=54 Identities=39% Similarity=0.711 Sum_probs=41.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCC-------CCC------CCCE-E-EECHHHH--HHHHHCCC
Q ss_conf 3877538999999999977985999956876-------555------7713-6-6788899--99998899
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQ-------LSD------SGFG-I-QISPNAS--RILKRIGI 54 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~-------~~~------~g~g-i-~l~p~~~--~~L~~lGi 54 (380)
||||||++|||+|..||++|++|+|||.+.- +++ +|+. + .|-|.|+ ++|++||+
T Consensus 5 vVIGaGIaGLTaAALLA~~G~~Vtl~E~h~q~GGCAgTFrRr~ftFDVGATQVAGLEpGGiH~riF~~L~~ 75 (499)
T TIGR02733 5 VVIGAGIAGLTAAALLAKRGYRVTLLEQHAQLGGCAGTFRRRGFTFDVGATQVAGLEPGGIHARIFRELGL 75 (499)
T ss_pred EEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCEEECCCCCCCHHHHHHHHCCC
T ss_conf 99818726789999998539967999740127875443436874540455221367898579999985488
No 76
>PRK07233 hypothetical protein; Provisional
Probab=98.58 E-value=1.5e-07 Score=70.25 Aligned_cols=58 Identities=38% Similarity=0.615 Sum_probs=44.6
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCC-------CCCEEE-----E---CHHHHHHHHHCCCHHHH
Q ss_conf 3877538999999999977985999956876555-------771366-----7---88899999988994789
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSD-------SGFGIQ-----I---SPNASRILKRIGILDQL 58 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~-------~g~gi~-----l---~p~~~~~L~~lGi~~~~ 58 (380)
+|||||++||++|..|+++|++|+|||+++.+.= .|+-+- + .+...++++++|+.+++
T Consensus 3 vVIGaG~aGLsaA~~L~~~G~~V~VlEa~~~~GGr~~t~~~~G~~~d~g~h~~~~~~~~~~~l~~elgl~~~~ 75 (430)
T PRK07233 3 AIIGGGIMGLAAAYRLAKAGHEVTVFEADDQLGGLAASFEFGGLSIERFYHHIFKSDEALLDLLEELGLEDKL 75 (430)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCEEEECCEEEECCCCHHHHHHHHHHCCCCCE
T ss_conf 9999778999999999839998899958998959977998599699666137068847999999980996430
No 77
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.57 E-value=6.7e-07 Score=65.84 Aligned_cols=154 Identities=21% Similarity=0.219 Sum_probs=77.7
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCC-CC--CEE-EE---CHH-HH-HHHHHCCCHHHHHHC-CCCCC--C-
Q ss_conf 3877538999999999977985999956876555-77--136-67---888-99-999988994789862-68843--0-
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSD-SG--FGI-QI---SPN-AS-RILKRIGILDQLEDI-WIEPE--D- 67 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~-~g--~gi-~l---~p~-~~-~~L~~lGi~~~~~~~-~~~~~--~- 67 (380)
+|||||++|+++|+.|+++|.+|+|+||.+.... .+ .|. .. .+. .. ..+....+|.++.+. ++... +
T Consensus 4 ~VIGaGi~Gls~A~~La~~G~~V~vle~~~~~~gaS~~n~G~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~G~ 83 (365)
T TIGR03364 4 IIVGAGILGLAHAYAAARRGLSVTVIERSSRAQGASVRNFGQVWPTGQAPGPAWDRARRSREIWLELAAKAGIWVRENGS 83 (365)
T ss_pred EEECCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCE
T ss_conf 99993299999999999789949999899999774576420460157684899999999999999988734989794278
Q ss_pred EEEEECCCCCC-C--------------CCCCCC---CC---C-CCC-CCCE----EEEEECCHHHHHHHHHHHHCCCEEE
Q ss_conf 69997885443-3--------------345543---23---4-444-7824----7862000134788997320687256
Q gi|254780168|r 68 FVFRSGSTLKE-L--------------SRFSCK---NY---S-RNN-WGGI----YGVVKRHTLQKILLNHIQTQPLARL 120 (380)
Q Consensus 68 ~~~~~~~~~~~-~--------------~~~~~~---~~---~-~~~-~~~~----~~~i~r~~l~~~L~~~~~~~~~~~~ 120 (380)
+.+........ + .-++.. .. . .+. .+.. ...++-..+...|.+.+....++++
T Consensus 84 l~~a~~~~~~~~l~~~~~~~~~~g~~~e~l~~~e~~~~~P~l~~~~~~ga~~~p~~g~~~p~~~~~~l~~~~a~~~Gv~~ 163 (365)
T TIGR03364 84 LHLARTEEELAVLEEFAATREPAEYRVELLTPAEVAAKFPALRLDGLRGGLHSPDELRVEPREAIPALAAYLAEQHGVEF 163 (365)
T ss_pred EEEECCHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCCCCEEEEECCCCCEECHHHHHHHHHHHHHHHCCCEE
T ss_conf 99987989999999999999976996499779999986686667753699994998789999999999999998579289
Q ss_pred EEEECCCCCCCCCC-CCCCCEEEEEEEEECCCCCC
Q ss_conf 42101234432112-34531035689974367663
Q gi|254780168|r 121 HLSTHITHPDCTQI-SKINNQKPDLLVGADGLNSN 154 (380)
Q Consensus 121 ~~~~~v~~~~~~~~-~~~~~~~adlvIgADG~~S~ 154 (380)
+.++.|...+...+ ++..+++||-||-|-|++|.
T Consensus 164 ~~~t~V~~i~~~~V~T~~G~i~a~~VVvaaG~~~~ 198 (365)
T TIGR03364 164 HWNTAVTSVETGTVRTSRGDVHADQVFVCPGADFE 198 (365)
T ss_pred EEEEEEEEEEEEEEEECCCEEEEEEEEECCCCHHH
T ss_conf 93128996201489978928997669996684055
No 78
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=98.56 E-value=2.2e-07 Score=69.10 Aligned_cols=57 Identities=30% Similarity=0.579 Sum_probs=43.7
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC-------CCCCE--E--------EECHHHHHHHHHCCCHHH
Q ss_conf 387753899999999997798599995687655-------57713--6--------678889999998899478
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS-------DSGFG--I--------QISPNASRILKRIGILDQ 57 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~-------~~g~g--i--------~l~p~~~~~L~~lGi~~~ 57 (380)
||||||++||++|..|+++|++|+|||+++.+. ..+.+ + ...++..++++++|+.+.
T Consensus 2 vVIGaGlaGL~AA~~L~~~G~~V~VlEa~~r~GGR~~t~~~~~~~~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 75 (430)
T TIGR03467 2 VIIGGGLAGLSAAVELARAGVRVTLFEARPRLGGRARSFVDGSLDQTVDNGQHVLLGAYTNLLALLRRIGAEPR 75 (430)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCEEEECCCEEEECCCHHHHHHHHHCCCCCC
T ss_conf 99878689999999998789988999489988167678997888859967957983855799999996399534
No 79
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=98.54 E-value=7.7e-08 Score=72.29 Aligned_cols=82 Identities=27% Similarity=0.419 Sum_probs=47.1
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCCCC-CCCEEEECHHH----H-HHHHHCCCHHHHHHCCCCC-CCEEEEECC
Q ss_conf 877538999999999977985999956876555-77136678889----9-9999889947898626884-306999788
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSD-SGFGIQISPNA----S-RILKRIGILDQLEDIWIEP-EDFVFRSGS 74 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~-~g~gi~l~p~~----~-~~L~~lGi~~~~~~~~~~~-~~~~~~~~~ 74 (380)
|||.|||||++|..|.|+||.||||||++...= .-||| ||- - -+.+++ +.|.++|+.- .+..+=+++
T Consensus 156 VVGSGPAGLAaA~qLnrAGH~VTVfER~DR~GGLL~YGI---PnmKLdK~e~v~RRi---~~l~aEG~~FvtnteiGdWd 229 (517)
T TIGR01317 156 VVGSGPAGLAAADQLNRAGHTVTVFEREDRVGGLLRYGI---PNMKLDKEEIVDRRI---DLLEAEGVDFVTNTEIGDWD 229 (517)
T ss_pred EECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC---CCCCCCHHHHHHHHH---HHHHHCCCCCCCCCCCCCCC
T ss_conf 975675799999998535883899743678886302488---874337388999999---99874784201783004653
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 544333455432344
Q gi|254780168|r 75 TLKELSRFSCKNYSR 89 (380)
Q Consensus 75 ~~~~~~~~~~~~~~~ 89 (380)
....+.+++-.+...
T Consensus 230 enskitnlsk~di~~ 244 (517)
T TIGR01317 230 ENSKITNLSKKDISA 244 (517)
T ss_pred CCCCEECCCCCCCCH
T ss_conf 444200022342687
No 80
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.54 E-value=2.3e-05 Score=55.29 Aligned_cols=53 Identities=26% Similarity=0.362 Sum_probs=39.6
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC-CCCCEEEECHHHHHHHHHCC
Q ss_conf 387753899999999997798599995687655-57713667888999999889
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS-DSGFGIQISPNASRILKRIG 53 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~-~~g~gi~l~p~~~~~L~~lG 53 (380)
||||||+.|+.+|.-++.+|++|.|+||...-+ +.++.-.|-..++|.|+...
T Consensus 10 lVIGGGitGag~A~daa~RGl~v~LvE~~DfasGTSsrSskLiHGGlRYLe~~~ 63 (503)
T PRK13369 10 AVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEYYE 63 (503)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHCCC
T ss_conf 999967888999999996899499982687558444764226534166542066
No 81
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.52 E-value=9.4e-07 Score=64.83 Aligned_cols=162 Identities=21% Similarity=0.249 Sum_probs=86.1
Q ss_pred CEECCHHHHHHHHHHHHHCC--CEEEEEECCCCCCCC---------CCEEEECHHHHHH-HHHCC--C-HHHHHHCCCC-
Q ss_conf 38775389999999999779--859999568765557---------7136678889999-99889--9-4789862688-
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRG--IQSCVLEKKDQLSDS---------GFGIQISPNASRI-LKRIG--I-LDQLEDIWIE- 64 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G--~~v~i~Er~~~~~~~---------g~gi~l~p~~~~~-L~~lG--i-~~~~~~~~~~- 64 (380)
||||||+.|+++|..|++.+ ++|.|+||...+... -.|+--.|.++++ |...| . .+-.+..+.+
T Consensus 7 vIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq~~~~f 86 (429)
T COG0579 7 VIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQLGIPF 86 (429)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99897389899999999738896599997057653334567653442554489855133999999999999999849861
Q ss_pred --CCCEEEEECCCC------------------------CCCC-CCCCCC--CCCCCCCCEEEEEECCHHHHHHHHHHHHC
Q ss_conf --430699978854------------------------4333-455432--34444782478620001347889973206
Q gi|254780168|r 65 --PEDFVFRSGSTL------------------------KELS-RFSCKN--YSRNNWGGIYGVVKRHTLQKILLNHIQTQ 115 (380)
Q Consensus 65 --~~~~~~~~~~~~------------------------~~~~-~~~~~~--~~~~~~~~~~~~i~r~~l~~~L~~~~~~~ 115 (380)
...+.+..++.. ..+. ..|.-. .....+-+....|.-..+-..|.+.+.++
T Consensus 87 ~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~e~a~~~ 166 (429)
T COG0579 87 INCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAEEAQAN 166 (429)
T ss_pred CCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHCCCCCCCCEEEEECCCCCEECHHHHHHHHHHHHHHC
T ss_conf 23680899978277899999999886579861442699999862965443651468757775076899999999999976
Q ss_pred CCEEEEEEECCCCC----CCC---CCCCCCC-EEEEEEEEECCCCC-CCHHHCCCCC
Q ss_conf 87256421012344----321---1234531-03568997436766-3121128533
Q gi|254780168|r 116 PLARLHLSTHITHP----DCT---QISKINN-QKPDLLVGADGLNS-NIRHYIDTQP 163 (380)
Q Consensus 116 ~~~~~~~~~~v~~~----~~~---~~~~~~~-~~adlvIgADG~~S-~vR~~l~~~~ 163 (380)
+..++++++|++. +++ ...++++ .+|++||.|=|.+| .+-+..+.+.
T Consensus 167 -g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~ 222 (429)
T COG0579 167 -GVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPE 222 (429)
T ss_pred -CCEEEECCEEEEEEEECCCEEEEEECCCCEEEEEEEEEECCCHHHHHHHHHHCCCC
T ss_conf -97899348364789927965999834796789956899897451799999728986
No 82
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.49 E-value=2.6e-07 Score=68.67 Aligned_cols=54 Identities=39% Similarity=0.625 Sum_probs=41.1
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC--CCE-----EEECHHHHHHHHHCCC
Q ss_conf 38775389999999999779859999568765557--713-----6678889999998899
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDS--GFG-----IQISPNASRILKRIGI 54 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~--g~g-----i~l~p~~~~~L~~lGi 54 (380)
+||||||+||++|..|++.|++|.||||+-.+.-- +.| +.+...+.++|+++|+
T Consensus 34 iIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI 94 (262)
T COG1635 34 IIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGI 94 (262)
T ss_pred EEECCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHCC
T ss_conf 9987685057899999867964999973014687633443335604442538999998198
No 83
>TIGR02734 crtI_fam phytoene desaturase; InterPro: IPR014105 Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family are CrtI and are part of flavin containing amine oxidoreductase family. It is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis..
Probab=98.47 E-value=1.1e-07 Score=71.30 Aligned_cols=65 Identities=37% Similarity=0.641 Sum_probs=46.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC-------CC-CCE------EEECHHHHH-HHHHCC--CHHHHHHCCC
Q ss_conf 387753899999999997798599995687655-------57-713------667888999-999889--9478986268
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS-------DS-GFG------IQISPNASR-ILKRIG--ILDQLEDIWI 63 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~-------~~-g~g------i~l~p~~~~-~L~~lG--i~~~~~~~~~ 63 (380)
+|||||++||++|+.|+.+|++|+|+||+..+. +. |+- +-+-|..++ ++...| +.++++-...
T Consensus 2 ~VIGAG~gGLA~A~rL~~~G~~vtv~E~~d~pGGRA~~~~~~fGf~fD~GPTv~t~P~~~~elF~~~G~~~~~~v~L~~l 81 (526)
T TIGR02734 2 VVIGAGFGGLALAIRLQAAGIRVTVVEKRDKPGGRAGVLEDDFGFRFDTGPTVITMPEALEELFALAGRDLADYVELVPL 81 (526)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEECCCCEEEECCCCEEECHHHHHHHHHHHCHHHHHHCCCCCC
T ss_conf 68577768999999997379528998606898750556881575466058824544678999998834316964585315
Q ss_pred CC
Q ss_conf 84
Q gi|254780168|r 64 EP 65 (380)
Q Consensus 64 ~~ 65 (380)
.|
T Consensus 82 ~P 83 (526)
T TIGR02734 82 DP 83 (526)
T ss_pred CC
T ss_conf 87
No 84
>KOG1399 consensus
Probab=98.45 E-value=7.8e-07 Score=65.35 Aligned_cols=132 Identities=17% Similarity=0.144 Sum_probs=71.1
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 38775389999999999779859999568765557713667888999999889947898626884306999788544333
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELS 80 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
.||||||+||++|..|.+.|++|+|+||.+.+. .-....++.- .+ .....+.+.....+......
T Consensus 10 aIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iG---GlW~y~~~~~------~~------~ss~Y~~l~tn~pKe~~~~~ 74 (448)
T KOG1399 10 AVIGAGPAGLAAARELLREGHEVVVFERTDDIG---GLWKYTENVE------VV------HSSVYKSLRTNLPKEMMGYS 74 (448)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEEECCCCC---CEEEECCCCC------CC------CCCHHHHHHCCCCHHHHCCC
T ss_conf 897856688899999987799836997058745---4586057656------55------43243421046884442579
Q ss_pred CCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCC-EEEEEEECCCCCCCC-------CCCCC----CCEEEEEEEEE
Q ss_conf 4554323444478247862000134788997320687-256421012344321-------12345----31035689974
Q gi|254780168|r 81 RFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPL-ARLHLSTHITHPDCT-------QISKI----NNQKPDLLVGA 148 (380)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~-~~~~~~~~v~~~~~~-------~~~~~----~~~~adlvIgA 148 (380)
+++..+. .+.....+.++.+.|.+-++.-.. ..+++++++..++.. ...+. ...-+|.|+.|
T Consensus 75 dfpf~~~------~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVc 148 (448)
T KOG1399 75 DFPFPER------DPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVC 148 (448)
T ss_pred CCCCCCC------CCCCCCCHHHHHHHHHHHHHHCCHHHHEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEEEEEEC
T ss_conf 9897545------7111788889999999998735834626734657998405677416898148864058996389995
Q ss_pred CCCCC
Q ss_conf 36766
Q gi|254780168|r 149 DGLNS 153 (380)
Q Consensus 149 DG~~S 153 (380)
-|-+.
T Consensus 149 tGh~~ 153 (448)
T KOG1399 149 TGHYV 153 (448)
T ss_pred CCCCC
T ss_conf 56768
No 85
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.44 E-value=2.4e-07 Score=68.92 Aligned_cols=32 Identities=31% Similarity=0.492 Sum_probs=30.5
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 87753899999999997798599995687655
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
|||||||||++|..|+++||+|+|||+.+.+.
T Consensus 142 VIGaGPAGLsaA~~La~~G~~VtVfE~~~~~G 173 (560)
T PRK12771 142 VIGGGPAGLSAAYQLRRLGHAVTIFEAGPKLG 173 (560)
T ss_pred EECCCHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 98977899999999997698589967678889
No 86
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.43 E-value=4.2e-07 Score=67.19 Aligned_cols=59 Identities=42% Similarity=0.686 Sum_probs=45.6
Q ss_pred CEECCHHHHHHHHHHHHHCC--CEEEEEECCCCCC-------CCCCEE--------EECHHHHHHHHHCCCHHHHH
Q ss_conf 38775389999999999779--8599995687655-------577136--------67888999999889947898
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRG--IQSCVLEKKDQLS-------DSGFGI--------QISPNASRILKRIGILDQLE 59 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G--~~v~i~Er~~~~~-------~~g~gi--------~l~p~~~~~L~~lGi~~~~~ 59 (380)
+|||||++||++|..|+++| ++|+|||+++.+. ..|+-+ .-.|...++++++|+.+++.
T Consensus 4 ~VIGaGiaGLsaA~~L~~~G~~~~VtvlEa~~r~GG~i~t~~~~g~~~e~Gp~~~~~~~~~~~~l~~~lGL~~~~i 79 (452)
T PRK11883 4 AIIGGGISGLTAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIDLGPESFLARKPSAPALIKELGLEDELV 79 (452)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEECCEEEECCCCCCEECCHHHHHHHHHCCCCCEEE
T ss_conf 9999878999999999964979978999889988103889836999996888802237867999999859963450
No 87
>pfam07992 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=98.43 E-value=1.3e-06 Score=63.84 Aligned_cols=30 Identities=37% Similarity=0.639 Sum_probs=28.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 387753899999999997798599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
+||||||||+++|..|++.|++|+|||+.+
T Consensus 3 vIIGgG~AGl~aA~~l~~~g~~v~lid~~~ 32 (277)
T pfam07992 3 VIIGGGPAGLAAAIYLARLGLKVALIEKEG 32 (277)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 999976999999999984999799993799
No 88
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.43 E-value=2.7e-07 Score=68.58 Aligned_cols=32 Identities=38% Similarity=0.540 Sum_probs=30.5
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 87753899999999997798599995687655
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
|||||||||++|..|++.||+|+|||+.+.+.
T Consensus 198 IIGaGPAGLsaAy~L~~~Gh~VTVfE~~~~~G 229 (652)
T PRK12814 198 IIGAGPAGLTAAYYLLRKGHDVTIFDANEQAG 229 (652)
T ss_pred EECCCHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 96837899999999997799069981588889
No 89
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.43 E-value=2.7e-07 Score=68.51 Aligned_cols=32 Identities=31% Similarity=0.644 Sum_probs=30.3
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 87753899999999997798599995687655
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
|||||||||++|..|++.|++|+|||+.+.+.
T Consensus 148 VIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~G 179 (472)
T PRK12810 148 VVGSGPAGLAAADQLARAGHKVTVFERDDRIG 179 (472)
T ss_pred EECCCHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 98977899999999986697589972577777
No 90
>PRK11749 putative oxidoreductase; Provisional
Probab=98.42 E-value=2.8e-07 Score=68.46 Aligned_cols=33 Identities=36% Similarity=0.640 Sum_probs=30.6
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
-|||||||||++|..|+++|++|+||||.+.+.
T Consensus 144 AIIGaGPAGLsAA~~Lar~G~~VtVfE~~~~~G 176 (460)
T PRK11749 144 AVIGAGPAGLTAAHRLARKGYDVTIFEARDKAG 176 (460)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 998967899999999997698479970478787
No 91
>PRK12831 putative oxidoreductase; Provisional
Probab=98.41 E-value=2.9e-07 Score=68.29 Aligned_cols=32 Identities=31% Similarity=0.567 Sum_probs=30.3
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 87753899999999997798599995687655
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
|||+|||||++|..|+++||+|+|||+.+.+.
T Consensus 145 VIGsGPAGLsaA~~La~~G~~VtVfE~~~~~G 176 (464)
T PRK12831 145 VIGSGPAGLTCAGDLAKKGYDVTIFEALHEPG 176 (464)
T ss_pred EECCCHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 98976899999999997699179982788889
No 92
>PRK13984 putative oxidoreductase; Provisional
Probab=98.40 E-value=3.3e-07 Score=67.93 Aligned_cols=53 Identities=25% Similarity=0.455 Sum_probs=38.8
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-CCEE---EECH----HHHHHHHHCCC
Q ss_conf 8775389999999999779859999568765557-7136---6788----89999998899
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDS-GFGI---QISP----NASRILKRIGI 54 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~-g~gi---~l~p----~~~~~L~~lGi 54 (380)
|||+|||||++|..|++.||+|+|||+.+.+.-. -+|| .|.. +-++.|+++|+
T Consensus 288 VIGsGPAGLaaA~~Lar~Gh~VtVFE~~~~~GGlL~yGIP~fRLpk~vv~rei~~i~~~GV 348 (604)
T PRK13984 288 IVGSGPAGLSAAYFLATMGYEVEVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGV 348 (604)
T ss_pred EECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 9898689999999999869868997456778972331587222878999999999997298
No 93
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.39 E-value=3.7e-07 Score=67.56 Aligned_cols=53 Identities=32% Similarity=0.605 Sum_probs=38.9
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-CCEE---EECH----HHHHHHHHCCC
Q ss_conf 8775389999999999779859999568765557-7136---6788----89999998899
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDS-GFGI---QISP----NASRILKRIGI 54 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~-g~gi---~l~p----~~~~~L~~lGi 54 (380)
|||+|||||++|..|++.||+|+|||+.+.+.-. -+|| .|.. .-++.|+++|+
T Consensus 315 VIGsGPAGLaaA~~Lar~G~~VTVfE~~~~~GGlL~yGIP~fRLPK~vv~rei~~l~~lGV 375 (639)
T PRK12809 315 VIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGI 375 (639)
T ss_pred EECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 9897589999999999759906999368888986853587452777899999999986498
No 94
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.37 E-value=4.1e-07 Score=67.29 Aligned_cols=32 Identities=38% Similarity=0.548 Sum_probs=30.4
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 87753899999999997798599995687655
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
|||+|||||++|..|++.||+|+|||+.+.+.
T Consensus 542 VIGsGPAGLaAA~~Lar~Gh~VTVFEk~~~~G 573 (1012)
T TIGR03315 542 VIGAGPAGLSAGYFLARAGHPVTVFEKKEKPG 573 (1012)
T ss_pred EECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 98977899999999997799569981589788
No 95
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.36 E-value=4.6e-07 Score=66.92 Aligned_cols=32 Identities=31% Similarity=0.515 Sum_probs=30.3
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 87753899999999997798599995687655
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
|||+|||||++|..|++.||+|+|||+.+.+.
T Consensus 555 VIGsGPAGLaAA~~Lar~Gh~VTVFEk~~~~G 586 (1032)
T PRK09853 555 VIGAGPAGLAAGYFLARAGHPVTVFEREENAG 586 (1032)
T ss_pred EECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 98968899999999997799369981589788
No 96
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.36 E-value=4.8e-07 Score=66.80 Aligned_cols=53 Identities=32% Similarity=0.601 Sum_probs=38.2
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-CCEE---EECH----HHHHHHHHCCC
Q ss_conf 8775389999999999779859999568765557-7136---6788----89999998899
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDS-GFGI---QISP----NASRILKRIGI 54 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~-g~gi---~l~p----~~~~~L~~lGi 54 (380)
|||+|||||++|..|++.||+|+|||+.+.+.-. -+|| .|.. .-++.|+.+|+
T Consensus 332 IIGsGPAGLsaA~~Lar~G~~VTVFE~~~~~GGlL~yGIP~fRLpk~vv~~ei~~l~~lGV 392 (654)
T PRK12769 332 IIGAGPAGLACADVLTRNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGI 392 (654)
T ss_pred EECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 9897789999999999769757995257778866752486222778999999999982698
No 97
>PRK07208 hypothetical protein; Provisional
Probab=98.34 E-value=5.4e-07 Score=66.48 Aligned_cols=33 Identities=42% Similarity=0.609 Sum_probs=30.9
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
+||||||+||++|..|+++|++|+||||++.+.
T Consensus 7 ~IiGAG~~GL~aA~~L~~~g~~v~vlEk~~~vG 39 (474)
T PRK07208 7 VIIGAGPAGLTAAYELVKRGYPVTILEADPEVG 39 (474)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 998976899999999986899759997899875
No 98
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.34 E-value=3.5e-06 Score=60.86 Aligned_cols=107 Identities=15% Similarity=0.203 Sum_probs=61.8
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 38775389999999999779859999568765557713667888999999889947898626884306999788544333
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELS 80 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
|||||||||+++|++.+|+|+++.|++++ .|.-+..+ ..+.-+
T Consensus 216 iIIGgGPAGlsAAIYaaR~gl~t~vi~~~-----~GGqv~~t-----------------------~~IeNy--------- 258 (515)
T TIGR03140 216 LVVGGGPAGAAAAIYAARKGLRTAMVAER-----IGGQVKDT-----------------------VGIENL--------- 258 (515)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECC-----CCCCCEEC-----------------------CCEEEC---------
T ss_conf 99896789999999999779976999248-----77531303-----------------------460044---------
Q ss_pred CCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCC---CCC---CCCCCCCCCEEEEEEEEECCCCCC
Q ss_conf 45543234444782478620001347889973206872564210123---443---211234531035689974367663
Q gi|254780168|r 81 RFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHIT---HPD---CTQISKINNQKPDLLVGADGLNSN 154 (380)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~---~~~---~~~~~~~~~~~adlvIgADG~~S~ 154 (380)
+ +.+ .+.-.+|.+.+.++++..+. ++....+|. ..+ .+...++...+++-||-|-|+.-
T Consensus 259 --p---------G~~--~i~G~eL~~~~~~qa~~~gv-~~~~~~~v~~i~~~~~~~~v~~~~g~~~~aktVIiATGa~~- 323 (515)
T TIGR03140 259 --I---------SVP--YTTGSQLAANLEEHIKQYPI-DLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARW- 323 (515)
T ss_pred --C---------CCC--CCCHHHHHHHHHHHHHHCCC-EEEECCEEEEEECCCCCEEEEECCCCEEEECEEEECCCCCC-
T ss_conf --8---------987--77579999999999997496-89913369999727981899987998999397999569873-
Q ss_pred CHHHCCC
Q ss_conf 1211285
Q gi|254780168|r 155 IRHYIDT 161 (380)
Q Consensus 155 vR~~l~~ 161 (380)
+.++.
T Consensus 324 --r~l~v 328 (515)
T TIGR03140 324 --RKLGV 328 (515)
T ss_pred --CCCCC
T ss_conf --55899
No 99
>pfam01593 Amino_oxidase Flavin containing amine oxidoreductase. This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.
Probab=98.34 E-value=0.00019 Score=48.95 Aligned_cols=51 Identities=29% Similarity=0.405 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCC-------CCCCE-----EEE---CHHHHHHHHHCCCHHH
Q ss_conf 899999999997798599995687655-------57713-----667---8889999998899478
Q gi|254780168|r 7 ISGLTLAASLGHRGIQSCVLEKKDQLS-------DSGFG-----IQI---SPNASRILKRIGILDQ 57 (380)
Q Consensus 7 ~aGl~~A~~L~~~G~~v~i~Er~~~~~-------~~g~g-----i~l---~p~~~~~L~~lGi~~~ 57 (380)
++||++|..|+++|++|+|||+++.+. ..|.- -.+ .++..+.++++|+...
T Consensus 1 isGL~aA~~L~~~G~~V~vlEa~~riGGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~l~~~~~ 66 (444)
T pfam01593 1 LAGLAAARELLRAGFDVTVLEARDRVGGRIRTVRFDGFLIELGAQWFHGAYPNLLNLLLELGLELG 66 (444)
T ss_pred CHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEECCEEEECCCEEECCCCCHHHHHHHHHCCCCC
T ss_conf 928999999985899999993799882876689849999988823834998249999998574005
No 100
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.34 E-value=5e-06 Score=59.83 Aligned_cols=33 Identities=42% Similarity=0.678 Sum_probs=30.6
Q ss_pred CEECCHHHHHHHHHHHHHCCCE-EEEEECCCCCC
Q ss_conf 3877538999999999977985-99995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQ-SCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~-v~i~Er~~~~~ 33 (380)
+|||||++|+++|..|++.|++ ++||||+..+.
T Consensus 12 ~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~G 45 (443)
T COG2072 12 AIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVG 45 (443)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 9989878899999999975998679997057667
No 101
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.34 E-value=6.3e-05 Score=52.29 Aligned_cols=54 Identities=28% Similarity=0.459 Sum_probs=40.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC-CCCCEEEECHHHHHHHHHCCC
Q ss_conf 387753899999999997798599995687655-577136678889999998899
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS-DSGFGIQISPNASRILKRIGI 54 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~-~~g~gi~l~p~~~~~L~~lGi 54 (380)
+|||||+.|+-.|.-++.+|++|.++|+...-+ +.++.--|=..|+|.|++..+
T Consensus 16 iVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~ 70 (532)
T COG0578 16 IVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEF 70 (532)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCH
T ss_conf 9989865469999999867984999954765676667634575541666530654
No 102
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.32 E-value=6.7e-07 Score=65.81 Aligned_cols=53 Identities=25% Similarity=0.535 Sum_probs=38.3
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-CCEE---EECH----HHHHHHHHCCC
Q ss_conf 8775389999999999779859999568765557-7136---6788----89999998899
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDS-GFGI---QISP----NASRILKRIGI 54 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~-g~gi---~l~p----~~~~~L~~lGi 54 (380)
|||+|||||++|..|++.||+|+|||+.+.+.-. -+|| .|.. .-++.|.++|+
T Consensus 444 VIGsGPAGLsaA~~La~~G~~VtVFE~~~~~GG~L~yGIP~fRLPk~iv~~eI~~l~~lGV 504 (760)
T PRK12778 444 VIGSGPAGLSFAGDMAKYGYDVTVFEALHEIGGVLKYGIPEFRLPNKIVDVEIENLVKMGV 504 (760)
T ss_pred EECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 9897789999999999779906998058888975765486110878999999999986497
No 103
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.32 E-value=0.00014 Score=49.81 Aligned_cols=53 Identities=26% Similarity=0.406 Sum_probs=40.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC-CCCCEEEECHHHHHHHHHCC
Q ss_conf 387753899999999997798599995687655-57713667888999999889
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS-DSGFGIQISPNASRILKRIG 53 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~-~~g~gi~l~p~~~~~L~~lG 53 (380)
||||||+.|+..|.-++.+|++|.++|+...-. +.++.-.|-..|+|.|++..
T Consensus 10 lVIGGGitGagvA~daA~RGl~v~LvE~~DfasGTSsrSskLiHGGlRYLe~~~ 63 (503)
T PRK12266 10 LVIGGGINGAGIARDAAGRGLSVLLCEADDLASATSSASTKLIHGGLRYLEHYE 63 (503)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEECHHHHHCCC
T ss_conf 999977889999999986799699993687568334775447511577773284
No 104
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.31 E-value=8e-07 Score=65.30 Aligned_cols=33 Identities=45% Similarity=0.788 Sum_probs=30.4
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
||||||+.||++|+.|+++|++|+|+||+..+.
T Consensus 7 vVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~G 39 (487)
T COG1233 7 VVIGAGLNGLAAAALLARAGLKVTVLEKNDRVG 39 (487)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 998988789999999996899799996378887
No 105
>pfam01134 GIDA Glucose inhibited division protein A.
Probab=98.31 E-value=2.3e-06 Score=62.11 Aligned_cols=139 Identities=19% Similarity=0.221 Sum_probs=82.5
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEE-ECCCCCCCC-----CCEEEECHHHHHHHHHCC-CHHH-HHHCCCCCCCEEEEE
Q ss_conf 38775389999999999779859999-568765557-----713667888999999889-9478-986268843069997
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVL-EKKDQLSDS-----GFGIQISPNASRILKRIG-ILDQ-LEDIWIEPEDFVFRS 72 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~-Er~~~~~~~-----g~gi~l~p~~~~~L~~lG-i~~~-~~~~~~~~~~~~~~~ 72 (380)
+|||||.||+-+|+.+++.|.+|.+| .+...+..- -+|++ ...-++.++.|| +--. ....++ .++-
T Consensus 3 iVIGgGhAG~EAA~aaAr~G~~v~Lit~~~~~ig~msCnpSiGG~g-kG~LvrEidaLgG~m~~~aD~s~I-----q~r~ 76 (391)
T pfam01134 3 IVIGGGHAGCEAALAAARMGAKVLLITHNTDTIAELSCNPSIGGIA-KGHLVREIDALGGLMGKAADKTGI-----QFRM 76 (391)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEECCCCCCCCC-CCHHHHHHHHCCCHHHHHHHHHHH-----HHHH
T ss_conf 9999878999999999868996899973424315886565568753-043999998725899999999754-----5653
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCC------CCCCCCCCCCCCEEEEEEE
Q ss_conf 8854433345543234444782478620001347889973206872564210123------4432112345310356899
Q gi|254780168|r 73 GSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHIT------HPDCTQISKINNQKPDLLV 146 (380)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~------~~~~~~~~~~~~~~adlvI 146 (380)
.+..+. + . . ..+...++|..+.+.+.+.+...++.++....... .+.++...+++.+.++.||
T Consensus 77 LN~skG----p----A--v-~a~R~q~Dr~~y~~~~~~~l~~~~nl~i~~~eV~~l~~~~~~v~GV~~~~g~~i~a~~vI 145 (391)
T pfam01134 77 LNTSKG----P----A--V-RALRAQVDRDLYSKEMTETLENHPNLTLIQGEVTDLIPENGKVKGVVTEDGEEYKAKAVV 145 (391)
T ss_pred HCCCCC----C----C--C-CCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEECCCCEEEEEEECCCCEEECCEEE
T ss_conf 044678----7----6--6-685899879999999999997599939995464003026995999993799785144599
Q ss_pred EECCCCCCCH
Q ss_conf 7436766312
Q gi|254780168|r 147 GADGLNSNIR 156 (380)
Q Consensus 147 gADG~~S~vR 156 (380)
-|-|-+..-.
T Consensus 146 ltTGTFl~G~ 155 (391)
T pfam01134 146 IATGTFLNGK 155 (391)
T ss_pred EECCCCCCCC
T ss_conf 9315644541
No 106
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004 One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate . 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=98.27 E-value=9.5e-07 Score=64.79 Aligned_cols=53 Identities=30% Similarity=0.601 Sum_probs=37.8
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-CCEE---EECH----HHHHHHHHCCC
Q ss_conf 8775389999999999779859999568765557-7136---6788----89999998899
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDS-GFGI---QISP----NASRILKRIGI 54 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~-g~gi---~l~p----~~~~~L~~lGi 54 (380)
|||||||||+.|.-|||+||+|+|||.=+.|.=+ -||| .|.- .=++-|+.||+
T Consensus 147 ViGaGPAGL~cA~elAk~Gh~VtvfEALhKPGGV~~YGIPefRLpKei~~~E~k~LkklGv 207 (462)
T TIGR01316 147 VIGAGPAGLACASELAKKGHEVTVFEALHKPGGVLAYGIPEFRLPKEIVETEVKKLKKLGV 207 (462)
T ss_pred EECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCE
T ss_conf 9846821468899997479869999714899856753688854875788988887632663
No 107
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.24 E-value=5e-06 Score=59.82 Aligned_cols=59 Identities=31% Similarity=0.528 Sum_probs=46.6
Q ss_pred CEECCHHHHHHHHHHHHHCC--CEEEEEECCCCCC-------CCCCE-------EEEC-HHHHHHHHHCCCHHHHH
Q ss_conf 38775389999999999779--8599995687655-------57713-------6678-88999999889947898
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRG--IQSCVLEKKDQLS-------DSGFG-------IQIS-PNASRILKRIGILDQLE 59 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G--~~v~i~Er~~~~~-------~~g~g-------i~l~-p~~~~~L~~lGi~~~~~ 59 (380)
+|||||++||++|..|++.+ ++++|||+++... ..|.- +... +..++.+++||+.+.+.
T Consensus 4 ~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~ 79 (444)
T COG1232 4 AIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLEDKLL 79 (444)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEECCEEEEECHHHEECCHHHHHHHHHHHCCHHHHC
T ss_conf 9987828889999999985899867998348877865899831888875050440114088999999848177640
No 108
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.22 E-value=8.6e-06 Score=58.24 Aligned_cols=32 Identities=25% Similarity=0.425 Sum_probs=29.7
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 38775389999999999779859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
+||||||+|+++|+.+++.|.+|+|+|+.+.+
T Consensus 10 iVIGaGpaG~~aA~~aa~~G~kV~viE~~~~~ 41 (465)
T PRK05249 10 VVIGSGPAGEGAAMQAAKLGKRVAVIERYRNV 41 (465)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 99997789999999999789929999769997
No 109
>KOG2820 consensus
Probab=98.16 E-value=0.00019 Score=49.06 Aligned_cols=160 Identities=17% Similarity=0.152 Sum_probs=78.2
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEE----ECH---------HHHHHHHHCCCHHHHHHCCCCCCC
Q ss_conf 3877538999999999977985999956876555771366----788---------899999988994789862688430
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQ----ISP---------NASRILKRIGILDQLEDIWIEPED 67 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~----l~p---------~~~~~L~~lGi~~~~~~~~~~~~~ 67 (380)
||||||+-||++|..|++.|.++.++|+.+.+...|.... +-+ =+.+.++.|--.+++...-.....
T Consensus 11 iiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~~~~~~t 90 (399)
T KOG2820 11 IIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGVKLHCGT 90 (399)
T ss_pred EEECCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHCHHHHCEEECCCC
T ss_conf 99866400008899998657707987336777656765674402120233689999999999998748464333641562
Q ss_pred EEEEECCC-----------------------CCCC-CCCCC-CCCCCCC---CCCEEEEEECCHHHHHHHHHHHHCCCEE
Q ss_conf 69997885-----------------------4433-34554-3234444---7824786200013478899732068725
Q gi|254780168|r 68 FVFRSGST-----------------------LKEL-SRFSC-KNYSRNN---WGGIYGVVKRHTLQKILLNHIQTQPLAR 119 (380)
Q Consensus 68 ~~~~~~~~-----------------------~~~~-~~~~~-~~~~~~~---~~~~~~~i~r~~l~~~L~~~~~~~~~~~ 119 (380)
+.+..+.. .+.+ .++|. ....... .......|.-.+-.+.|.+.++..++ -
T Consensus 91 ~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~~~~G~-i 169 (399)
T KOG2820 91 GLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKARELGV-I 169 (399)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCEEEHHHHHHHHHHHHHHCCE-E
T ss_conf 036507678777899999876500355530279899758777657864122034556574188999999999987085-9
Q ss_pred EEEEECCCC---------CCCCCCCCCCCEEEEEEEEECCCC--CCCHHHCCC
Q ss_conf 642101234---------432112345310356899743676--631211285
Q gi|254780168|r 120 LHLSTHITH---------PDCTQISKINNQKPDLLVGADGLN--SNIRHYIDT 161 (380)
Q Consensus 120 ~~~~~~v~~---------~~~~~~~~~~~~~adlvIgADG~~--S~vR~~l~~ 161 (380)
++.+.++.. ...+..++++...|+=+|-+-|++ +-++..++.
T Consensus 170 ~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~~~~~ 222 (399)
T KOG2820 170 FRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLPTSLAI 222 (399)
T ss_pred EECCCCEEEEEECCCCCCEEEEEECCCCEEECCEEEEEECHHHHHHCCCCCCC
T ss_conf 96275045675046778525899666874331248998308788655742245
No 110
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.15 E-value=2.5e-06 Score=61.91 Aligned_cols=33 Identities=36% Similarity=0.441 Sum_probs=30.4
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
+||||||+|+++|+.+++.|++|+|||+.+.+.
T Consensus 21 ~IIGaGPaGlsAA~~aa~~G~~v~viEk~~~~G 53 (350)
T PRK12770 21 AIIGAGPAGLAAAGYLACLGHEVHVYDKLPEPG 53 (350)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 999955889999999997899859995369698
No 111
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=4.4e-06 Score=60.23 Aligned_cols=57 Identities=33% Similarity=0.532 Sum_probs=44.6
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC--------C----CEEE----ECHHHHHHHHHCCCHHH
Q ss_conf 38775389999999999779859999568765557--------7----1366----78889999998899478
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDS--------G----FGIQ----ISPNASRILKRIGILDQ 57 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~--------g----~gi~----l~p~~~~~L~~lGi~~~ 57 (380)
+|+|||+|||++|..|+.+|++|+|||+++.+.-. | .|+. .-+|.++.|++++..+.
T Consensus 4 ai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~~~ 76 (485)
T COG3349 4 AIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIEDR 76 (485)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCCEEEEEEEEECHHHHHHHHHHHHCCCHHE
T ss_conf 9974627888999999868985399842676686131115599984211567842368999997662785110
No 112
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.14 E-value=0.00016 Score=49.59 Aligned_cols=30 Identities=33% Similarity=0.680 Sum_probs=28.5
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 387753899999999997798599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
||||||..|+..|.-|++.|++|.|+||..
T Consensus 9 vIIGgGi~Ga~iArdla~rGl~v~LvEk~D 38 (545)
T PRK11101 9 IIIGGGATGAGIARDCALRGLRCILVERHD 38 (545)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 999986899999999986799399998997
No 113
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=2.3e-05 Score=55.31 Aligned_cols=29 Identities=38% Similarity=0.581 Sum_probs=25.6
Q ss_pred CEECCHHHHHHHHHHHHHCCCE-EEEEECC
Q ss_conf 3877538999999999977985-9999568
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQ-SCVLEKK 29 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~-v~i~Er~ 29 (380)
+|||||||||++|++++++|++ +.|+|+.
T Consensus 7 iIIGaGPAGl~AAiya~r~~l~~~li~~~~ 36 (305)
T COG0492 7 IIIGGGPAGLTAAIYAARAGLKVVLILEGG 36 (305)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 998958899999999987589856999478
No 114
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.12 E-value=4.6e-06 Score=60.07 Aligned_cols=30 Identities=30% Similarity=0.484 Sum_probs=28.4
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 387753899999999997798599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
+||||||+|+++|+.+++.|.+|+|+|+.+
T Consensus 7 vVIG~GpaG~~aA~~aa~~G~~V~liE~~~ 36 (460)
T PRK06292 7 IVIGAGPAGYVAARRAAKLGKKVALIEKGP 36 (460)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 999977899999999996979099995899
No 115
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.11 E-value=6e-06 Score=59.27 Aligned_cols=60 Identities=20% Similarity=0.366 Sum_probs=45.9
Q ss_pred CEECCHHHHHHHHHHHHHC------CCEEEEEECCCCCC-------CCC-------CEE-EECHHHHHHHHHCCCHHHHH
Q ss_conf 3877538999999999977------98599995687655-------577-------136-67888999999889947898
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHR------GIQSCVLEKKDQLS-------DSG-------FGI-QISPNASRILKRIGILDQLE 59 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~------G~~v~i~Er~~~~~-------~~g-------~gi-~l~p~~~~~L~~lGi~~~~~ 59 (380)
+|||||++||++|..|+|. +++|+|||+++.+. ..| .++ .-.|..++++++||+.|++.
T Consensus 5 aVIGgGISGLsaA~~L~~~~~~~~~~~~vtl~Eas~r~GG~I~T~~~~g~~~E~GP~s~~~~~~~~~~L~~eLGL~d~li 84 (466)
T PRK12416 5 VVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDLNLEEEMV 84 (466)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEEEEEECCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 99899789999999998725555899867999779988677989973999975598600348878999999869931144
Q ss_pred H
Q ss_conf 6
Q gi|254780168|r 60 D 60 (380)
Q Consensus 60 ~ 60 (380)
.
T Consensus 85 ~ 85 (466)
T PRK12416 85 Y 85 (466)
T ss_pred C
T ss_conf 6
No 116
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=98.11 E-value=2.3e-06 Score=62.17 Aligned_cols=50 Identities=30% Similarity=0.529 Sum_probs=38.1
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEE--ECH---------HHHHHHHHCCC
Q ss_conf 877538999999999977985999956876555771366--788---------89999998899
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQ--ISP---------NASRILKRIGI 54 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~--l~p---------~~~~~L~~lGi 54 (380)
|||||||||.+|=.|.|+|.+|+||||+|++. .=++ |.+ .=-++|+.|||
T Consensus 148 viGAGPAGLaCAD~L~RaGV~v~VfDRhP~iG---GLLtFGIPsFKLdK~V~~~Rr~if~~MGi 208 (480)
T TIGR01318 148 VIGAGPAGLACADILARAGVQVVVFDRHPEIG---GLLTFGIPSFKLDKAVLSRRREIFTAMGI 208 (480)
T ss_pred EECCCCCHHHHHHHHHHCCCEEEEEECCCCCC---CCCCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 97788602579998751785599974770307---60136888511027899999999975892
No 117
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.08 E-value=4.1e-06 Score=60.44 Aligned_cols=53 Identities=34% Similarity=0.585 Sum_probs=39.9
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-CCEE---EECH----HHHHHHHHCCC
Q ss_conf 8775389999999999779859999568765557-7136---6788----89999998899
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDS-GFGI---QISP----NASRILKRIGI 54 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~-g~gi---~l~p----~~~~~L~~lGi 54 (380)
|||+|||||++|..|++.|++|+|||+.+.+.-. -+|| .|.. .-++.|+++|+
T Consensus 437 VIGsGPAGLs~A~~Lar~G~~VTVfEal~~~GGvL~YGIPeFRLPK~IV~~EI~~l~~lGV 497 (993)
T PRK12775 437 IVGSGPAGLAAAADLTRYGVETTVYEALHVLGGVLQYGIPSFRLPRDIIDREIQRLKDIGV 497 (993)
T ss_pred EECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCE
T ss_conf 9783788999999999779964897168889972684377767888999999999987894
No 118
>KOG0029 consensus
Probab=98.07 E-value=4.4e-06 Score=60.19 Aligned_cols=33 Identities=39% Similarity=0.706 Sum_probs=30.5
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
||||||++||++|..|.+.|++|+|+|.+..+.
T Consensus 19 IVIGAGiaGLsAArqL~~~G~~V~VLEARdRvG 51 (501)
T KOG0029 19 IVIGAGLAGLSAARQLQDFGFDVLVLEARDRVG 51 (501)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 998985789999999997598259997147767
No 119
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.07 E-value=3.7e-05 Score=53.85 Aligned_cols=30 Identities=33% Similarity=0.625 Sum_probs=28.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 387753899999999997798599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
+||||||+|+++|+.+++.|.+|.|+||..
T Consensus 8 iVIG~GpaG~~AA~~aa~~G~kv~liE~~~ 37 (464)
T PRK05976 8 LIIGGGPGGYVAAIRAGQLGLKTALVEKGK 37 (464)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 999978899999999997899299997899
No 120
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.06 E-value=5e-06 Score=59.85 Aligned_cols=53 Identities=26% Similarity=0.445 Sum_probs=39.3
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-CCEE---EECH----HHHHHHHHCCC
Q ss_conf 8775389999999999779859999568765557-7136---6788----89999998899
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDS-GFGI---QISP----NASRILKRIGI 54 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~-g~gi---~l~p----~~~~~L~~lGi 54 (380)
|||+|||||++|..|++.|++|+|||+.+.+.-. -||| .|.. .=++.|+.+|+
T Consensus 311 VIGsGPAGLs~A~~Lar~Gy~VTVFEalh~~GGvL~YGIPeFRLPK~IV~~EI~~l~~lGV 371 (944)
T PRK12779 311 VVGSGPSGLINAYLLAVEGFPVTIFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGG 371 (944)
T ss_pred EECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCE
T ss_conf 9885768999999999779933999447878855895587666878999999999996783
No 121
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.05 E-value=4.9e-06 Score=59.88 Aligned_cols=30 Identities=33% Similarity=0.637 Sum_probs=28.5
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 387753899999999997798599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
|||||||||+++|++++|.|++++|+|+..
T Consensus 8 IIIGgGPAGlsAAIYaaRaglktlvIEk~~ 37 (555)
T TIGR03143 8 IIIGGGPAGLSAGIYAGRAKLDTLIIEKDD 37 (555)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 999956889999999997899679996688
No 122
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.99 E-value=3.7e-05 Score=53.84 Aligned_cols=30 Identities=30% Similarity=0.577 Sum_probs=28.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 387753899999999997798599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
+|||+||+|+++|+.+++.|.+|.|+|+..
T Consensus 8 iVIG~GpaG~~aA~~aa~~G~kV~liE~~~ 37 (462)
T PRK06416 8 IVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 999988899999999996899399996799
No 123
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR014006 Succinate:quinone oxidoreductase (1.3.5.1 from EC) refers collectively to succinate:quinone reductase (SQR, or Complex II) and quinol:fumarate reductase (QFR) . SQR is found in aerobic organisms, and catalyses the oxidation of succinate to fumarate in the citric acid cycle and donates the electrons to quinone in the membrane. QFR can be found in anaerobic cells respiring with fumarate as terminal electron acceptor. SQR and QFR are very similar in composition and structure, despite catalysing opposite reactions in vivo. They are thought to have evolved from a common ancestor, and in Escherichia coli they are capable of functionally replacing each other . Succinate:quinone oxidoreductases consist of a peripheral domain, exposed to the cytoplasm in bacteria and to the matrix in mitochondria, and a membrane-integral anchor domain that spans the membrane (Fig. 1). The peripheral part, which contains the dicarboxylate binding site, is composed of a flavoprotein subunit, with one covalently bound FAD, and an iron-sulphur protein subunit containing three iron-sulphur clusters. The membrane-integral domain functions to anchor the peripheral domain to the membrane and is required for quinone reduction and oxidation. The anchor domain shows the largest variability in composition and primary sequence, being composed either of one large subunit, or two smaller subunits, which may, or may not, contain protoheme groups. This entry represents the flavoprotein subunit found in both the SQR and QFR enzymes. This subunit contains an N-terminal domain which binds the FAD cofactor, a central catalytic domain with an unsual fold, and a C-terminal domain whose role is unclear , , . The dicarboxylate binding site is located between the FAD and catalytic domains..
Probab=97.99 E-value=3.1e-05 Score=54.38 Aligned_cols=178 Identities=19% Similarity=0.214 Sum_probs=96.6
Q ss_pred CEECCHHHHHHHHHHHHHCC---CEEEEEECCCCCCCC-------------------------------CCEE-------
Q ss_conf 38775389999999999779---859999568765557-------------------------------7136-------
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRG---IQSCVLEKKDQLSDS-------------------------------GFGI------- 39 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G---~~v~i~Er~~~~~~~-------------------------------g~gi------- 39 (380)
||||||.|||-+|+..++.| ++|.||=|--..|.. |...
T Consensus 3 vIVGaGgAGlRAA~e~a~~gPp~~~~AvisKvyP~RSHtvAAQGG~~Aal~~n~d~~D~~e~H~yDTVKGsDyLaDQDAv 82 (636)
T TIGR01812 3 VIVGAGGAGLRAAVEAAKAGPPNLNVAVISKVYPTRSHTVAAQGGIAAALANNVDPDDSWEWHAYDTVKGSDYLADQDAV 82 (636)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHH
T ss_conf 88818668999999997357796107999556988520153567899995778643207212304110144213258999
Q ss_pred ----EECHHHHHHHHHCCC-HHHHH---------HCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC----EEEEEEC
Q ss_conf ----678889999998899-47898---------62688430699978854433345543234444782----4786200
Q gi|254780168|r 40 ----QISPNASRILKRIGI-LDQLE---------DIWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGG----IYGVVKR 101 (380)
Q Consensus 40 ----~l~p~~~~~L~~lGi-~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~r 101 (380)
.=.|..+..|++||+ |.++. +....+..-.|++|...+ =+++....+-.+. ..+.-+|
T Consensus 83 e~~~~~AP~~v~eLe~wG~PfSR~~kGDRmaiinaqkttiteeDfRDG~IaQ----R~FGG~~~~~Gg~~a~RTcyAADk 158 (636)
T TIGR01812 83 EYMCKEAPKAVLELERWGVPFSRLPKGDRMAIINAQKTTITEEDFRDGRIAQ----RPFGGASFDYGGAAARRTCYAADK 158 (636)
T ss_pred HHHHHHCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEECCCCCCCCCEEE----CCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 9998515178999973789856786776477762454200201155883534----378888865566222134200121
Q ss_pred --CHHHHHHHHHHHHCCCEEEEEEEC-------------CCCCCCCCCCCCCC--EEEEEEEEECCCCCCCHHHCCCCCC
Q ss_conf --013478899732068725642101-------------23443211234531--0356899743676631211285334
Q gi|254780168|r 102 --HTLQKILLNHIQTQPLARLHLSTH-------------ITHPDCTQISKINN--QKPDLLVGADGLNSNIRHYIDTQPI 164 (380)
Q Consensus 102 --~~l~~~L~~~~~~~~~~~~~~~~~-------------v~~~~~~~~~~~~~--~~adlvIgADG~~S~vR~~l~~~~~ 164 (380)
+.|.+.|.+++.+.+++.+....- +..+....+.+|+. .+|+-||-|-|-..++=+.-.....
T Consensus 159 TGh~~LHTLye~~l~~~~V~ff~E~fa~~L~~~~~~GP~~~Gvva~~l~~G~~~~~~AKaVv~ATGG~GR~Y~~~tTNa~ 238 (636)
T TIGR01812 159 TGHALLHTLYEQCLKLDGVEFFNEYFALDLILDQDGGPRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRVYKFTTTNAH 238 (636)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEEECCEEEEECCCHHHHCCCCCCCE
T ss_conf 13147898999985379942753888877887458986799999998058808999607489830651021030445442
Q ss_pred CCCCC---EEEEEECC-CCCCC
Q ss_conf 43110---15786036-54465
Q gi|254780168|r 165 TFSGD---VVLRCLIP-QNNAP 182 (380)
Q Consensus 165 ~~~~~---~~~~~~i~-~~~~~ 182 (380)
.-+|. .++|.=+| ..++.
T Consensus 239 ~~TGDG~A~AlraG~PqL~DME 260 (636)
T TIGR01812 239 INTGDGLAMALRAGVPQLKDME 260 (636)
T ss_pred EECCCHHHHHHHHCCCCCCCCC
T ss_conf 2354068888873464316844
No 124
>PRK10262 thioredoxin reductase; Provisional
Probab=97.98 E-value=7.6e-06 Score=58.59 Aligned_cols=30 Identities=23% Similarity=0.459 Sum_probs=28.2
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 387753899999999997798599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
+|||||||||++|+.|++.|++++|+|+.+
T Consensus 10 iIIG~GPAGLsAA~~a~r~g~~~~lie~~~ 39 (321)
T PRK10262 10 LILGSGPAGYTAAVYAARANLQPVLITGME 39 (321)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 999976899999999998699679996059
No 125
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.93 E-value=6.9e-05 Score=52.01 Aligned_cols=32 Identities=31% Similarity=0.570 Sum_probs=28.6
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 38775389999999999779859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
+||||||+|.++|+.+++.|.+|.|+|++..+
T Consensus 7 iVIG~GpaG~~aA~~aa~~G~kValIE~~~~~ 38 (466)
T PRK06115 7 VIIGGGPGGYNAAIRAGQLGLKVACVEGRSTL 38 (466)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 99997889999999999789939999679996
No 126
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase; InterPro: IPR005982 Reactive oxygen species (ROS) are known mediators of intracellular signaling cascades. Excessive production of ROS may, however, lead to oxidative stress, loss of cell function, and ultimately apoptosis or necrosis. A balance between oxidant and antioxidant intracellular systems is hence vital for cell function, regulation, and adaptation to diverse growth conditions. Thioredoxin reductase in conjunction with thioredoxin is a ubiquitous oxidoreductase system with antioxidant and redox regulatory roles. Thioredoxin reductase (1.8.1.9 from EC) reduces oxidised thioredoxin in the presence of NADPH. Reduced thioredoxin serves as an electron donor for thioredoxin peroxidase which consequently reduces H_2O_2 to H_2O. In mammals, extracellular forms of Trx also have cytokine-like effects. Mammalian TrxR has a highly reactive active site selenocysteine residue resulting in a profound reductive capacity, reducing several substrates in addition to Trx .; GO: 0004791 thioredoxin-disulfide reductase activity, 0019430 removal of superoxide radicals, 0005737 cytoplasm.
Probab=97.92 E-value=1.1e-05 Score=57.47 Aligned_cols=120 Identities=14% Similarity=0.166 Sum_probs=72.1
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 38775389999999999779859999568765557713667888999999889947898626884306999788544333
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELS 80 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
|||||||||+|+|++-+|.+++..|||+...= -.|..+. ....++ ++..
T Consensus 4 iIIGaGPAGlTAAIYa~Ra~l~~l~~eg~~~G-~aGGql~-----------------------~T~~vE--NYPG----- 52 (321)
T TIGR01292 4 IIIGAGPAGLTAAIYAARANLKTLLIEGMEPG-IAGGQLT-----------------------TTTEVE--NYPG----- 52 (321)
T ss_pred EEECCCHHHHHHHHHHHHHCCEEEEEECCCCC-CCCCCCC-----------------------CCCEEE--CCCC-----
T ss_conf 99847867888999988746727898357777-4555333-----------------------220651--3686-----
Q ss_pred CCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCE-EE-EEEECCCCCCC-----C--CCCCCCCEEEEEEEEECCC
Q ss_conf 45543234444782478620001347889973206872-56-42101234432-----1--1234531035689974367
Q gi|254780168|r 81 RFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLA-RL-HLSTHITHPDC-----T--QISKINNQKPDLLVGADGL 151 (380)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~-~~-~~~~~v~~~~~-----~--~~~~~~~~~adlvIgADG~ 151 (380)
+. -.|.=..|.+-+++++..-+.. .. ....+|...+. . ..+. .+++||=||-|-|+
T Consensus 53 ------f~--------e~i~G~~L~~~M~~Qa~~fG~~~~~G~~v~~v~~~~~~yE~~~F~~~~~-~~y~a~avIiAtGa 117 (321)
T TIGR01292 53 ------FP--------EGISGPELMEKMKEQAKKFGAEIIYGEEVIRVDKSDRAYESDPFKVKTG-KEYTAKAVIIATGA 117 (321)
T ss_pred ------CC--------CCCCHHHHHHHHHHHHHHCCCCEEECCEEEEEECCCCCCCCCEEEEEEC-CEEEEEEEEEECCC
T ss_conf ------88--------8766288999999999870673662670568633788436610389717-56886589991387
Q ss_pred CCCCHHHCCCC--CCCCCCC
Q ss_conf 66312112853--3443110
Q gi|254780168|r 152 NSNIRHYIDTQ--PITFSGD 169 (380)
Q Consensus 152 ~S~vR~~l~~~--~~~~~~~ 169 (380)
.. |.|+.+ ...|.|.
T Consensus 118 ~~---r~lg~~kGE~ef~Gr 134 (321)
T TIGR01292 118 EA---RKLGIPKGEDEFLGR 134 (321)
T ss_pred HH---HHCCCCCCHHHHCCC
T ss_conf 15---423788664553268
No 127
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form; InterPro: IPR006281 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the monomeric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=97.89 E-value=0.0025 Score=41.27 Aligned_cols=205 Identities=18% Similarity=0.215 Sum_probs=96.4
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC------CEEEE-CHHH---HHH-HHHCCCHHHHHHCCC-C--CC
Q ss_conf 387753899999999997798599995687655577------13667-8889---999-998899478986268-8--43
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSG------FGIQI-SPNA---SRI-LKRIGILDQLEDIWI-E--PE 66 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g------~gi~l-~p~~---~~~-L~~lGi~~~~~~~~~-~--~~ 66 (380)
||||||+-|+.+|..|||+|.+++|+|.-..|...| |-|.- -|.. ..+ .+.--+|-+++.+.. . ..
T Consensus 4 IVvGAG~~G~~aaY~LAK~~~~~LLleqFd~pH~rGSsHG~sRiIR~aY~Edr~Y~~m~~e~~~lWa~le~E~g~k~h~q 83 (401)
T TIGR01377 4 IVVGAGIMGCFAAYHLAKRGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDRFYTSMVSECYQLWAQLEKEAGTKLHRQ 83 (401)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECC
T ss_conf 99817613568999987538617887515677678887877100010267863578899999999999862147264313
Q ss_pred CEEEEECCCCC--CCC------------C--CCCCCCCCCCCC--------------CEEEEEECCHHHHHHHHHHHHCC
Q ss_conf 06999788544--333------------4--554323444478--------------24786200013478899732068
Q gi|254780168|r 67 DFVFRSGSTLK--ELS------------R--FSCKNYSRNNWG--------------GIYGVVKRHTLQKILLNHIQTQP 116 (380)
Q Consensus 67 ~~~~~~~~~~~--~~~------------~--~~~~~~~~~~~~--------------~~~~~i~r~~l~~~L~~~~~~~~ 116 (380)
.-.+.-|.... .+. + ++.... .+++. ....+|.-..-.+++++.+...+
T Consensus 84 T~~l~~G~k~~s~~l~~~~a~~~~~~l~H~~~~s~~l-~~rf~G~i~~p~n~~g~~~~~gGvl~~~ka~~a~q~l~~~~G 162 (401)
T TIGR01377 84 TGLLLLGPKENSQSLKTIVATLSRHGLEHELLSSKQL-KQRFPGNIRVPRNEVGLLDELGGVLYAEKALRALQELAEAHG 162 (401)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCHHH-HHCCCCCEECCCCEEEEEECCCCEECHHHHHHHHHHHHHHCC
T ss_conf 4515631577860589999988625523033164123-200476234068607887468874622789999999998749
Q ss_pred CEEEEEEECCCCCCC--------CCC-CCCCCEEEEEEEEECCCCC--CCHHHCC-CCCC--CCCCCEE-EEEECCCCCC
Q ss_conf 725642101234432--------112-3453103568997436766--3121128-5334--4311015-7860365446
Q gi|254780168|r 117 LARLHLSTHITHPDC--------TQI-SKINNQKPDLLVGADGLNS--NIRHYID-TQPI--TFSGDVV-LRCLIPQNNA 181 (380)
Q Consensus 117 ~~~~~~~~~v~~~~~--------~~~-~~~~~~~adlvIgADG~~S--~vR~~l~-~~~~--~~~~~~~-~~~~i~~~~~ 181 (380)
. .++.+++|++... +.+ +......|+=+|..=|++. ++=+.|+ ++.| .+...+| ||...+...-
T Consensus 163 a-~v~d~~kV~~i~~~GesGe~~vt~kt~~~sy~a~~lvvtaGaW~s~kLl~~l~Gie~Plqplr~~Vcywr~~~~~~~~ 241 (401)
T TIGR01377 163 A-IVRDGTKVVEIKPDGESGELLVTVKTTKDSYQAKKLVVTAGAWTSNKLLKKLGGIELPLQPLRINVCYWREKEPKSEG 241 (401)
T ss_pred C-EEECCCEEEEEEECCCCCCCEEEEEEECCEEECCEEEEECCCCHHHHHCCCCCCEECCCCCCEEEEEEEEEECCCCCC
T ss_conf 6-873486036654267678954899972770321357895388612343130142326764210136478742276436
Q ss_pred CC-CCCCCCEEEEECCCC-EEEE-EEECCC
Q ss_conf 55-456676089976540-5788-840489
Q gi|254780168|r 182 PE-FIDFQSVNIFFGPDS-HLVT-YPLRED 208 (380)
Q Consensus 182 ~~-~~~~~~~~~~~~~~~-~~~~-~p~~~~ 208 (380)
.. ...++++ ++.+... ++.. +|..+.
T Consensus 242 ~~id~~fP~f-~~~~~~~H~iYgG~Ps~ey 270 (401)
T TIGR01377 242 VSIDQAFPCF-LVLGLNPHHIYGGLPSLEY 270 (401)
T ss_pred CEECCCCCEE-EEECCCCCEEECCCCCCCC
T ss_conf 2223557735-6535888447415378889
No 128
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.88 E-value=1.6e-05 Score=56.28 Aligned_cols=33 Identities=30% Similarity=0.657 Sum_probs=31.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
||||||++|+++|+.|++.|++|.++||.+.+.
T Consensus 128 LVIGGGvAGitAAl~La~~G~~v~LVEKepsiG 160 (622)
T COG1148 128 LVIGGGVAGITAALELADMGFKVYLVEKEPSIG 160 (622)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 998684898999999997598089994178645
No 129
>PRK04965 nitric oxide reductase; Provisional
Probab=97.86 E-value=0.0001 Score=50.83 Aligned_cols=32 Identities=19% Similarity=0.361 Sum_probs=27.5
Q ss_pred CEECCHHHHHHHHHHHHHCC--CEEEEEECCCCC
Q ss_conf 38775389999999999779--859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRG--IQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G--~~v~i~Er~~~~ 32 (380)
||||+|+||.++|..|++.+ .+++||++.+.+
T Consensus 6 VIIG~G~AG~~aa~~lR~~d~~~~Itvi~~e~~~ 39 (378)
T PRK04965 6 VIIGSGFAARQLVKNIRKQDAHIPITLITADSGD 39 (378)
T ss_pred EEECCCHHHHHHHHHHHCCCCCCCEEEEECCCCC
T ss_conf 9998829999999999711949869999899998
No 130
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase; InterPro: IPR004379 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity, 0009103 lipopolysaccharide biosynthetic process.
Probab=97.85 E-value=1.9e-05 Score=55.86 Aligned_cols=52 Identities=33% Similarity=0.613 Sum_probs=39.4
Q ss_pred CEECCHHHHHHHHH-HHHHCCCEEEEEECCCCCC-------CCCCEEE--------ECHHHHHHHHHC
Q ss_conf 38775389999999-9997798599995687655-------5771366--------788899999988
Q gi|254780168|r 1 MIIGAGISGLTLAA-SLGHRGIQSCVLEKKDQLS-------DSGFGIQ--------ISPNASRILKRI 52 (380)
Q Consensus 1 iIvGaG~aGl~~A~-~L~~~G~~v~i~Er~~~~~-------~~g~gi~--------l~p~~~~~L~~l 52 (380)
||||||++|..+|. .|++.|-+|.|+||+..+. +.+.||. ++.+...+++-+
T Consensus 5 iivGaGl~G~V~A~r~l~~lgk~VLvvEkR~hiGGNcYd~~D~~Tgil~H~YGpHIfHTd~~~v~~y~ 72 (390)
T TIGR00031 5 IIVGAGLSGIVLANRILAQLGKRVLVVEKRNHIGGNCYDEVDENTGILFHQYGPHIFHTDNQEVFDYI 72 (390)
T ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCHHHHHH
T ss_conf 99866367799999999970998899973066587344422488743677418803543853143223
No 131
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.85 E-value=0.0003 Score=47.66 Aligned_cols=146 Identities=18% Similarity=0.198 Sum_probs=69.2
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC----CCEEE--EC--------------------HHHHHHHHHC--
Q ss_conf 38775389999999999779859999568765557----71366--78--------------------8899999988--
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDS----GFGIQ--IS--------------------PNASRILKRI-- 52 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~----g~gi~--l~--------------------p~~~~~L~~l-- 52 (380)
||||+|+|||++|+.++ +|.+|+|+||.+..+.. ..|++ +. |..++.|-+=
T Consensus 8 lVIGsG~AGl~AAi~a~-~~~~V~li~K~~~~~~nS~~A~GGi~aa~~~dd~~~~~~DtlkaG~~~~d~~lv~~l~~~s~ 86 (433)
T PRK06175 8 LIVGSGVAGLYCALNLR-KDLKIVLVSKKKLNECNTYLAQGGISVARNKEDIPTFVEDTLKAGQYKNNLEAVKILANESI 86 (433)
T ss_pred EEECCCHHHHHHHHHCC-CCCCEEEEECCCCCCCCHHHHCCCCEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 99995699999999617-89988999788999976687602724732899879999999986578788999999999889
Q ss_pred CCHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC---
Q ss_conf 99478986268843069997885443334554323444478247862000134788997320687256421012344---
Q gi|254780168|r 53 GILDQLEDIWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP--- 129 (380)
Q Consensus 53 Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~--- 129 (380)
...+.+.+.+++... ..++..+.+. ..+...+.-.. ..-.-..+.+.|.+++.+..++++...+.+.+.
T Consensus 87 ~ai~~L~~~Gv~f~r-----~~~g~~~~r~--GgHs~~R~~~~-~d~tG~~i~~~L~~~~~~~~~I~i~~~~~~~~Li~~ 158 (433)
T PRK06175 87 ENINKLIDMGLNFDK-----DEKELNYTKE--GAHSVNRIVHF-KDYTGKKVEKILLKKVKKRKNITIIENCELVDIIEN 158 (433)
T ss_pred HHHHHHHHCCCCCCC-----CCCCCEEECC--CCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEE
T ss_conf 999999975986211-----6887245414--65667852335-886299999999999971799679973887887873
Q ss_pred C----CC-CCCCCC--CEEEEEEEEECCCCCCC
Q ss_conf 3----21-123453--10356899743676631
Q gi|254780168|r 130 D----CT-QISKIN--NQKPDLLVGADGLNSNI 155 (380)
Q Consensus 130 ~----~~-~~~~~~--~~~adlvIgADG~~S~v 155 (380)
+ ++ .+.+++ .++|+-||-|-|-.+.+
T Consensus 159 ~~~v~G~v~~~~g~~~~i~AkaVILATGG~g~l 191 (433)
T PRK06175 159 DNTCIGGILLKDNKQINIYSKVTILATGGIGGL 191 (433)
T ss_pred CCEEEEEEEEECCCEEEEEECEEEECCCCCCCC
T ss_conf 898999999957978999836699867986543
No 132
>PRK06370 mercuric reductase; Validated
Probab=97.84 E-value=2.1e-05 Score=55.52 Aligned_cols=30 Identities=33% Similarity=0.535 Sum_probs=28.4
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 387753899999999997798599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
|||||||+|+++|+.+++.|.+|.|+||.+
T Consensus 8 iVIG~GpAG~~AA~~aa~~G~~V~liEk~~ 37 (459)
T PRK06370 8 VVIGAGQAGPPLAARAAGLGMKVALIERGL 37 (459)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 999988899999999996899199996899
No 133
>KOG2852 consensus
Probab=97.82 E-value=0.0011 Score=43.80 Aligned_cols=151 Identities=15% Similarity=0.148 Sum_probs=76.5
Q ss_pred CEECCHHHHHHHHHHHHHCC------CEEEEEECCCCCCC-CC--CEE-----------EECHHHHHHHHHCCCHHHH--
Q ss_conf 38775389999999999779------85999956876555-77--136-----------6788899999988994789--
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRG------IQSCVLEKKDQLSD-SG--FGI-----------QISPNASRILKRIGILDQL-- 58 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G------~~v~i~Er~~~~~~-~g--~gi-----------~l~p~~~~~L~~lGi~~~~-- 58 (380)
+|||||+.|.++|..|++++ ++++|+|++.-..- .| .|+ .|.+-+.+.-+.| -|++
T Consensus 14 ~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~L--sdeydG 91 (380)
T KOG2852 14 VIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEEL--SDEYDG 91 (380)
T ss_pred EEECCCCEEEEEEHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHH--HHHHCC
T ss_conf 998887046642003442876677841599996034343556641045676637865322357778888877--776268
Q ss_pred -HHCCCCCCCEEEE--ECCCCC------CCCCCC---CCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf -8626884306999--788544------333455---4323444478247862000134788997320687256421012
Q gi|254780168|r 59 -EDIWIEPEDFVFR--SGSTLK------ELSRFS---CKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHI 126 (380)
Q Consensus 59 -~~~~~~~~~~~~~--~~~~~~------~~~~~~---~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v 126 (380)
..-++..-...+. ++.+-+ .+..+. ..+...--.+.....++-..|.+.+.+.+.+.+++++.+++..
T Consensus 92 vnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~lv~Gkv~ 171 (380)
T KOG2852 92 VNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKLVFGKVK 171 (380)
T ss_pred CCCCCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCCEECHHHHHHHHHHHHHHHCCEEEEEEEEE
T ss_conf 44445224327999960244786667765255556775100013687753011789999999999886267689986668
Q ss_pred CC-CCCCCC-----C---C-CCCEEEEEEEEECCCCC
Q ss_conf 34-432112-----3---4-53103568997436766
Q gi|254780168|r 127 TH-PDCTQI-----S---K-INNQKPDLLVGADGLNS 153 (380)
Q Consensus 127 ~~-~~~~~~-----~---~-~~~~~adlvIgADG~~S 153 (380)
+- ++..++ . + +...+.+.+|-+-|-++
T Consensus 172 ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWT 208 (380)
T KOG2852 172 EVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWT 208 (380)
T ss_pred EEECCCCCCCCCCHHHHCCCEEEEEEEEEEEECCCCC
T ss_conf 8632446121540233048437834238999527873
No 134
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.82 E-value=2.5e-05 Score=55.03 Aligned_cols=32 Identities=41% Similarity=0.596 Sum_probs=29.5
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 38775389999999999779859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
.|||+|++|+++|..|+.+|++|+||||....
T Consensus 5 aIVGaGiAGl~aA~~L~~aG~~vtV~eKg~Gv 36 (331)
T COG3380 5 AIVGAGIAGLAAAYALREAGREVTVFEKGRGV 36 (331)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 99756368899999998669579999738875
No 135
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.82 E-value=2.4e-05 Score=55.12 Aligned_cols=31 Identities=35% Similarity=0.591 Sum_probs=29.2
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 3877538999999999977985999956876
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
|||||||+|+++|+.+++.|.+|+|+|+.+.
T Consensus 7 iIIGaGpaG~~AA~~aa~~G~kV~liE~~~~ 37 (438)
T PRK07251 7 IVIGFGKAGKTLAAKLASAGKKVALVERSKA 37 (438)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 9999788999999999978894999946998
No 136
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.79 E-value=0.00015 Score=49.61 Aligned_cols=143 Identities=14% Similarity=0.215 Sum_probs=67.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 38775389999999999779859999568765557713667888999999889947898626884306999788544333
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELS 80 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
|||||||+|.++|+.+++.|.+|.++|+.+.+.-.---..+=| +..++....+.+.+..... ..++.. . . .
T Consensus 8 vVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIP-sK~Ll~~a~~~~~~~~~~~-~~Gi~~---~---~-~ 78 (454)
T COG1249 8 VVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIP-SKALLHAAEVIEEARHAAK-EYGISA---E---V-P 78 (454)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEECCCC-CHHHHHHHHHHHHHHHHCC-CCCEEC---C---C-C
T ss_conf 9989777799999999967997799930698676557467314-4999999999999864142-365205---7---7-8
Q ss_pred CCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCC--CCCEEEEEEEEECCCCCCCHHH
Q ss_conf 45543234444782478620001347889973206872564210123443211234--5310356899743676631211
Q gi|254780168|r 81 RFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHPDCTQISK--INNQKPDLLVGADGLNSNIRHY 158 (380)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~adlvIgADG~~S~vR~~ 158 (380)
.+++......... .+ ..+.+-+...++...+..++-..+..+...+.+.. ..+.+++.+|-|-|.+...-..
T Consensus 79 ~~d~~~~~~~k~~----v~--~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~ 152 (454)
T COG1249 79 KIDFEKLLARKDK----VV--RLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPG 152 (454)
T ss_pred CCCHHHHHHHHHH----HH--HHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEECCCCEEEEECEEEEECCCCCCCCCC
T ss_conf 5389999999999----99--98767799999748988999899988899899906875499827899906998778998
No 137
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.78 E-value=3.1e-05 Score=54.36 Aligned_cols=32 Identities=25% Similarity=0.511 Sum_probs=29.6
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 38775389999999999779859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
+||||||+|+++|+.+++.|.+|+|+|+.+.+
T Consensus 8 vVIGgGpaG~~aA~~aa~~G~kV~liE~~~~~ 39 (472)
T PRK06467 8 VVLGAGPAGYSAAFRAADLGLETVCVERYSTL 39 (472)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 99998889999999999789969999637997
No 138
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.76 E-value=0.00031 Score=47.54 Aligned_cols=32 Identities=38% Similarity=0.543 Sum_probs=28.2
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
||||+|.|||++|+.++++ .+|+|++|.+..+
T Consensus 12 lVIGsG~AGl~AAi~a~~~-~~V~lv~K~~~~~ 43 (535)
T PRK09077 12 LIIGSGAAGLSLALRLAEH-RKVAVLSKGPLSE 43 (535)
T ss_pred EEECCCHHHHHHHHHHCCC-CCEEEEECCCCCC
T ss_conf 9999539999999974038-9889997889999
No 139
>KOG3923 consensus
Probab=97.75 E-value=0.0028 Score=41.03 Aligned_cols=225 Identities=14% Similarity=0.202 Sum_probs=106.3
Q ss_pred CEECCHHHHHHHHHHHHHCC-------CEEEEEECCCCCCC---CCCEEEECHH-----HHHHHHHCC-----CHHHHHH
Q ss_conf 38775389999999999779-------85999956876555---7713667888-----999999889-----9478986
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRG-------IQSCVLEKKDQLSD---SGFGIQISPN-----ASRILKRIG-----ILDQLED 60 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G-------~~v~i~Er~~~~~~---~g~gi~l~p~-----~~~~L~~lG-----i~~~~~~ 60 (380)
.|||+|+.||++|+.+.+.+ .+|+|++-++.+.. .++|+ +.|. +.+.-.+++ -+..+..
T Consensus 7 aViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~~~AGl-~~p~~~~~~~~~~~~~w~k~tf~~l~~l~r 85 (342)
T KOG3923 7 AVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSDVAAGL-FRPDLSDGTPQEINRQWGKDTFNYLAHLAR 85 (342)
T ss_pred EEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCE-EECCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 9974771015689999986541268862278745778655555434642-111467897078899987999999999860
Q ss_pred C-CCCCCCEEEEECCCC---CCCCC--------------CC---CCCCCC-CCCCCEE--EEEECCHHHHHHHHHHHHCC
Q ss_conf 2-688430699978854---43334--------------55---432344-4478247--86200013478899732068
Q gi|254780168|r 61 I-WIEPEDFVFRSGSTL---KELSR--------------FS---CKNYSR-NNWGGIY--GVVKRHTLQKILLNHIQTQP 116 (380)
Q Consensus 61 ~-~~~~~~~~~~~~~~~---~~~~~--------------~~---~~~~~~-~~~~~~~--~~i~r~~l~~~L~~~~~~~~ 116 (380)
. -.+-.++.+.++... ..+.+ ++ +..+.. ..++..+ +...-..+...|.+++.+.+
T Consensus 86 s~~a~~aGV~l~sg~~ls~~e~~~~~~~~w~diV~~fr~l~e~EL~~f~~~~~~G~~~Tt~~sE~~~ylpyl~k~l~e~G 165 (342)
T KOG3923 86 SEEAGEAGVCLVSGHILSDSESLDDQQRSWGDIVYGFRDLTERELLGFPDYSTYGIHFTTYLSEGPKYLPYLKKRLTENG 165 (342)
T ss_pred CCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCC
T ss_conf 55566462588611674157873123456877643332179888537888665636677640065456689999998558
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECC
Q ss_conf 72564210123443211234531035689974367663121128533443110157860365446554566760899765
Q gi|254780168|r 117 LARLHLSTHITHPDCTQISKINNQKPDLLVGADGLNSNIRHYIDTQPITFSGDVVLRCLIPQNNAPEFIDFQSVNIFFGP 196 (380)
Q Consensus 117 ~~~~~~~~~v~~~~~~~~~~~~~~~adlvIgADG~~S~vR~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 196 (380)
+..+ ..+|++.+.+ -..++|+||-|-|..|.. ..+.+. .+..||.+-.-+.|...++. +-..
T Consensus 166 vef~--~r~v~~l~E~-----~~~~~DVivNCtGL~a~~--L~gDd~-----~yPiRGqVl~V~ApWvkhf~----~~D~ 227 (342)
T KOG3923 166 VEFV--QRRVESLEEV-----ARPEYDVIVNCTGLGAGK--LAGDDD-----LYPIRGQVLKVDAPWVKHFI----YRDF 227 (342)
T ss_pred CEEE--EEEECCHHHH-----CCCCCCEEEECCCCCCCC--CCCCCC-----EEECCCEEEEEECCCEEEEE----EECC
T ss_conf 4898--7560558774-----257886899877644222--368865-----21313459996077025888----7258
Q ss_pred CCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCE
Q ss_conf 4057888404897379999845774211123455322238989863212802220
Q gi|254780168|r 197 DSHLVTYPLREDNTINMVFVSSKHTLKDISFLKRSEIHKEWFVKHLTNWHQEIIQ 251 (380)
Q Consensus 197 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (380)
.. .|++++.+.+.+..+.-+..+. ..........+++++....|.+++
T Consensus 228 ~~---ty~iP~~~~V~lGg~~Q~g~w~----~ei~~~D~~dIl~rc~aL~P~l~~ 275 (342)
T KOG3923 228 SR---TYIIPGTESVTLGGTKQEGNWN----LEITDEDRRDILERCCALEPSLRH 275 (342)
T ss_pred CC---EEEECCCCEEEEECCCCCCCCC----CCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 85---0884588648980410477556----657755699999999872844135
No 140
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.74 E-value=4.1e-05 Score=53.56 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=29.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 38775389999999999779859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
|||||||||+++|+.+++.|.+|+|+|+...+
T Consensus 8 iVIG~GpAG~~AA~~aa~~G~kValiE~~~~~ 39 (475)
T PRK06327 8 VVIGAGPGGYVAAIRAAQLGLKVACIEAWKNP 39 (475)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 99998889999999999789919999725776
No 141
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.74 E-value=2.8e-05 Score=54.71 Aligned_cols=32 Identities=31% Similarity=0.693 Sum_probs=30.4
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 38775389999999999779859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
||||+|.|||++|+..+.+|.+|+|+||.+.+
T Consensus 9 VVVGaG~AGl~AAi~Aae~Ga~VivlEK~~~~ 40 (560)
T PRK07843 9 VVVGSGAAGMVAALTAAHRGLSTVVVEKAPHY 40 (560)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 99896789999999999889988999699997
No 142
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.71 E-value=4.6e-05 Score=53.23 Aligned_cols=30 Identities=30% Similarity=0.481 Sum_probs=28.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 387753899999999997798599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
|||||||+|+++|+.+++.|.+|.|+|+..
T Consensus 5 iVIG~GpaG~~AA~~aa~~G~kV~lIE~~~ 34 (467)
T PRK07845 5 VIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (467)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 998748899999999997879599996799
No 143
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=97.70 E-value=4.9e-05 Score=53.07 Aligned_cols=130 Identities=18% Similarity=0.313 Sum_probs=69.4
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHH---HHHHHHHCCCHHHHH----HCCCCCCCEEEEEC
Q ss_conf 38775389999999999779859999568765557713667888---999999889947898----62688430699978
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPN---ASRILKRIGILDQLE----DIWIEPEDFVFRSG 73 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~---~~~~L~~lGi~~~~~----~~~~~~~~~~~~~~ 73 (380)
|||||||+|-.+|+..||.|.+|+|+||.. + .|..|+-. |-.+|+.-.++++++ +.|+.... .+.
T Consensus 5 vViGgGPGGYVAAIrAAQlG~KValvEK~~-l----GGtCLN~GCIPtKaLL~~ae~~~~~~h~a~~~Gi~~~~-~v~-- 76 (481)
T TIGR01350 5 VVIGGGPGGYVAAIRAAQLGLKVALVEKEK-L----GGTCLNVGCIPTKALLHSAEVYDEIKHKAKDLGIEVEN-NVS-- 76 (481)
T ss_pred EEECCCCCHHHHHHHHHHCCCEEEEEEECC-C----CCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCEEECC-EEE--
T ss_conf 998778772799999986498089998035-6----87487277675478877667899999889867803367-126--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHH---HHHCCCEEEEEE-ECCCCCCCCCCCCCC-----CEEEEE
Q ss_conf 85443334554323444478247862000134788997---320687256421-012344321123453-----103568
Q gi|254780168|r 74 STLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNH---IQTQPLARLHLS-THITHPDCTQISKIN-----NQKPDL 144 (380)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~---~~~~~~~~~~~~-~~v~~~~~~~~~~~~-----~~~adl 144 (380)
+++....... ...-+-|... +-+...++...+ .++.+...+.+.+.+ +++++=
T Consensus 77 --------~d~~~~~~rK----------~~VV~~L~~Gv~~LlkknKv~v~~G~a~~~~~~~v~V~~~~~~~~~~~~~k~ 138 (481)
T TIGR01350 77 --------VDWEKMQERK----------NKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPNTVSVTGENGEEEETLEAKN 138 (481)
T ss_pred --------ECHHHHHHHH----------HHHHHHHHHHHHHHHHHCCEEEEEEEEEEECCCEEEEECCCCCEEEEEEEEE
T ss_conf --------7589999998----------8987542467898863068059999999985858998356553114787403
Q ss_pred EEEECCCCCCCHHH
Q ss_conf 99743676631211
Q gi|254780168|r 145 LVGADGLNSNIRHY 158 (380)
Q Consensus 145 vIgADG~~S~vR~~ 158 (380)
+|-|-| |..|..
T Consensus 139 ~iiATG--S~P~~l 150 (481)
T TIGR01350 139 IIIATG--SRPREL 150 (481)
T ss_pred EEEECC--CCCCCC
T ss_conf 799338--603435
No 144
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.70 E-value=0.00026 Score=48.02 Aligned_cols=137 Identities=15% Similarity=0.143 Sum_probs=80.4
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCC-CCC-----CCCEEEECHHHHHHHHHCC-CHHHHHHCCCCCCCEEEEEC
Q ss_conf 3877538999999999977985999956876-555-----7713667888999999889-94789862688430699978
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQ-LSD-----SGFGIQISPNASRILKRIG-ILDQLEDIWIEPEDFVFRSG 73 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~-~~~-----~g~gi~l~p~~~~~L~~lG-i~~~~~~~~~~~~~~~~~~~ 73 (380)
||||||-||+-+|.+.++.|.++.++-.+.+ +.. .-.|++ -.+-++.++.|| +--.+.+. ..+.|+-.
T Consensus 10 IViG~GhAG~EAa~aaar~G~~t~lit~~~~~ig~msCNPsiGGi~-KG~lvrEidaLgG~mg~~aD~----~~Iq~r~L 84 (621)
T PRK05192 10 IVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIA-KGHLVREIDALGGEMGKAADK----TGIQFRML 84 (621)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCCCCC-HHHHHHHHHHCCCHHHHHHHH----HHHHHHHH
T ss_conf 9989757999999999967996799965813115860452036721-657666877536899999988----76168761
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCC------CCCCCCCCCCCCEEEEEEEE
Q ss_conf 854433345543234444782478620001347889973206872564210123------44321123453103568997
Q gi|254780168|r 74 STLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHIT------HPDCTQISKINNQKPDLLVG 147 (380)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~------~~~~~~~~~~~~~~adlvIg 147 (380)
+..+. . ..++ +...++|....+.+.+.+...++..+.....+. .+.++...++..+.|+-||-
T Consensus 85 N~sKG--------p--Av~~-~RaQ~Dr~~Y~~~~~~~l~~~~nl~i~~~~v~~l~~~~~~v~GV~~~~g~~i~a~~vvl 153 (621)
T PRK05192 85 NTSKG--------P--AVRA-PRAQADRKLYRAAMREILENQPNLTLFQGEVEDLIVENDRVKGVVTQDGLEFRAKAVVL 153 (621)
T ss_pred CCCCC--------C--CCCC-HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCEEEEEEECCCEEEEEEEEEE
T ss_conf 58888--------3--0067-39888599999999999964999789981457999879999999966870998526998
Q ss_pred ECCCCC
Q ss_conf 436766
Q gi|254780168|r 148 ADGLNS 153 (380)
Q Consensus 148 ADG~~S 153 (380)
+-|-+-
T Consensus 154 ttGTFL 159 (621)
T PRK05192 154 TTGTFL 159 (621)
T ss_pred ECCCCC
T ss_conf 315645
No 145
>KOG2853 consensus
Probab=97.69 E-value=0.0026 Score=41.16 Aligned_cols=34 Identities=35% Similarity=0.534 Sum_probs=29.6
Q ss_pred CEECCHHHHHHHHHHHHH----CCCEEEEEECCCCCCC
Q ss_conf 387753899999999997----7985999956876555
Q gi|254780168|r 1 MIIGAGISGLTLAASLGH----RGIQSCVLEKKDQLSD 34 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~----~G~~v~i~Er~~~~~~ 34 (380)
||||||..|++.|..|+. .|++|.|+||+.....
T Consensus 90 vIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytq 127 (509)
T KOG2853 90 VIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQ 127 (509)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 99888865226589998876437943999962675210
No 146
>TIGR01372 soxA sarcosine oxidase, alpha subunit family; InterPro: IPR006277 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form. ; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=97.69 E-value=5.1e-05 Score=52.92 Aligned_cols=32 Identities=22% Similarity=0.512 Sum_probs=29.8
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 38775389999999999779859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
||||||||||++|++-+++|.+|+|+|=++++
T Consensus 180 LVVGaGPAGLAAA~aAa~~GArViL~DE~~~~ 211 (1026)
T TIGR01372 180 LVVGAGPAGLAAALAAARAGARVILVDEQAEA 211 (1026)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 88788967999999996479889997067657
No 147
>PRK12839 hypothetical protein; Provisional
Probab=97.68 E-value=4.9e-05 Score=53.01 Aligned_cols=33 Identities=30% Similarity=0.499 Sum_probs=30.7
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
||||+|.|||++|+..++.|.+|+|+||.+.+.
T Consensus 13 vVVGsG~AGl~AAi~Aa~~Ga~VivlEK~~~~G 45 (574)
T PRK12839 13 IVVGSGAGGLSAAVSAAYGGKKVAVVEKASVCG 45 (574)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 998968999999999998899289996899998
No 148
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.67 E-value=5.9e-05 Score=52.50 Aligned_cols=33 Identities=21% Similarity=0.553 Sum_probs=30.8
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
||||+|.|||++|+..+++|.+|+||||.+.+.
T Consensus 10 vVVG~G~AGl~AAi~Aae~Ga~V~vlEK~~~~G 42 (552)
T PRK12844 10 VVVGSGGGGMVAALAAASSGLETLIVEKQPKVG 42 (552)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 998967899999999998899689998899966
No 149
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.67 E-value=5.4e-05 Score=52.75 Aligned_cols=30 Identities=27% Similarity=0.541 Sum_probs=28.5
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 387753899999999997798599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
|||||||+|.++|+.+++.|.+|+|+|+..
T Consensus 4 vVIG~GpaG~~aA~~aa~~G~kV~lIEk~~ 33 (458)
T PRK06912 4 VIIGGGPAGYVAAITAAQNGKEVTLIDEAD 33 (458)
T ss_pred EEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 999008899999999997859599995899
No 150
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.65 E-value=4.2e-05 Score=53.48 Aligned_cols=32 Identities=22% Similarity=0.536 Sum_probs=29.7
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
||||+| +|+++|+..+++|.+|+|+||.+.+.
T Consensus 20 vVVGsG-AGl~AAi~Aae~G~~VivlEK~~~~G 51 (566)
T PRK12845 20 LVVGSG-TGMAAALAAHELGLSVLIVEKSSYVG 51 (566)
T ss_pred EEECHH-HHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 998846-99999999998899389996899998
No 151
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=97.64 E-value=7.2e-05 Score=51.89 Aligned_cols=33 Identities=33% Similarity=0.603 Sum_probs=30.6
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
||||+|.|||++|+..+++|.+|+|+||.+.+.
T Consensus 9 vVVG~G~AGl~AAi~Aae~Ga~VillEK~~~~G 41 (567)
T PRK12842 9 LVIGSGAAGLSAAITARKLGLDVVVLEKEPVFG 41 (567)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 998968899999999998799089997799888
No 152
>pfam00890 FAD_binding_2 FAD binding domain. This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.
Probab=97.63 E-value=7.6e-05 Score=51.72 Aligned_cols=32 Identities=31% Similarity=0.640 Sum_probs=30.0
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 38775389999999999779859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
||||+|+||+++|+.++++|.+|+|+||.+..
T Consensus 3 vVIG~G~AGl~AAi~Aae~Ga~VillEk~~~~ 34 (401)
T pfam00890 3 VVIGSGLAGLAAALEAAEAGLKVAVVEKGQPF 34 (401)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 99988699999999999789948999789999
No 153
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.63 E-value=7.7e-05 Score=51.70 Aligned_cols=33 Identities=30% Similarity=0.609 Sum_probs=30.8
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
||||+|.+||++|+..++.|.+|+|+||.+.+.
T Consensus 14 vVVG~G~AGl~AAi~Aae~Ga~VillEK~~~~G 46 (579)
T PRK06134 14 LVIGSGAAGLAAAVTAAWHGLKVVVVEKDPVFG 46 (579)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 998967899999999998799489997999887
No 154
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.63 E-value=7.2e-05 Score=51.89 Aligned_cols=30 Identities=30% Similarity=0.529 Sum_probs=28.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 387753899999999997798599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
|||||||+|+++|+.+++.|.+|.|+|+..
T Consensus 8 iVIG~GpaG~~aA~~aa~~G~kv~iiE~~~ 37 (467)
T PRK07818 8 VVLGAGPGGYVAAIRAAQLGLKTAVVEPKY 37 (467)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 999978899999999997899099994899
No 155
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.62 E-value=7.8e-05 Score=51.66 Aligned_cols=33 Identities=33% Similarity=0.512 Sum_probs=30.8
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
||||+|.+||++|+..+++|.+|+|+||.+...
T Consensus 64 vVVG~G~AGl~AAi~Aae~Ga~VvllEK~~~~G 96 (506)
T PRK06481 64 VIVGAGGAGMTAAIEAKDAGMNPVILEKMPVAG 96 (506)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 998988999999999998899789996899999
No 156
>PRK06116 glutathione reductase; Validated
Probab=97.61 E-value=7.7e-05 Score=51.68 Aligned_cols=30 Identities=27% Similarity=0.538 Sum_probs=28.1
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 387753899999999997798599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
|||||||+|+++|+.+++.|.+|.|+|+..
T Consensus 8 vVIG~GpaG~~aA~~aa~~G~kV~liE~~~ 37 (450)
T PRK06116 8 IVIGGGSGGIASANRAAMYGAKVALIEAKE 37 (450)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 999988899999999996879699993799
No 157
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.61 E-value=5.8e-05 Score=52.52 Aligned_cols=53 Identities=32% Similarity=0.482 Sum_probs=39.1
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-CCEE-------EECHHHHHHHHHCCC
Q ss_conf 8775389999999999779859999568765557-7136-------678889999998899
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDS-GFGI-------QISPNASRILKRIGI 54 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~-g~gi-------~l~p~~~~~L~~lGi 54 (380)
|||+||+||++|..|+++|++|+|+|+.+.+.-. -+|| .+..+.++.|++.|+
T Consensus 128 viGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv 188 (457)
T COG0493 128 VIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGV 188 (457)
T ss_pred EECCCCHHHHCHHHHHHCCCEEEECCCCCCCCEEEEECCCHHHCCCHHHHHHHHHHHHCCC
T ss_conf 9888951555889998689879982666777447981484464642068999999987490
No 158
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.60 E-value=8.2e-05 Score=51.49 Aligned_cols=31 Identities=35% Similarity=0.609 Sum_probs=29.1
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 3877538999999999977985999956876
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
|||||||+|.++|+.+++.|.+|.|+||...
T Consensus 7 iVIG~GpaG~~aA~~aa~~G~~ValIEk~~~ 37 (441)
T PRK08010 7 VIIGFGKAGKTLAVTLAKAGWRVALIEQSNA 37 (441)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 9999788999999999978992999975899
No 159
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.60 E-value=8.7e-05 Score=51.32 Aligned_cols=33 Identities=21% Similarity=0.501 Sum_probs=30.6
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
||||+|.+|+++|+..+++|.+|+|+||.+.+.
T Consensus 18 vVVG~G~AGl~AA~~Aae~Ga~VivlEK~~~~G 50 (576)
T PRK12843 18 IVIGSGAAGMAAALFAAIAGLKVLLVERTEYVG 50 (576)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 998968899999999998899489997979998
No 160
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.60 E-value=9e-05 Score=51.22 Aligned_cols=32 Identities=31% Similarity=0.637 Sum_probs=30.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 38775389999999999779859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
||||+|.+|+++|+..+++|.+|+|+||.+.+
T Consensus 15 vVVG~G~AGl~AA~~Aae~Ga~VivlEK~~~~ 46 (584)
T PRK12835 15 LVVGSGGGGMTAALTAAARGLDTLVVEKSAHF 46 (584)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 99896789999999999889958999699998
No 161
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.59 E-value=7.8e-05 Score=51.64 Aligned_cols=33 Identities=30% Similarity=0.568 Sum_probs=31.0
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
||||+|.|||++|+..++.|-+|+|+||.+.+.
T Consensus 413 IVVGsGlAGLSAAIeA~e~GakVVLLEKmp~lG 445 (1167)
T PTZ00306 413 IVVGGGLAGCSAAIEAASCGAQVILLEKEAKLG 445 (1167)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 998975799999999997799579995789888
No 162
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.57 E-value=0.00072 Score=45.03 Aligned_cols=146 Identities=16% Similarity=0.186 Sum_probs=69.2
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC----CCEEE--EC---------------------HHHHHHHHHC-
Q ss_conf 38775389999999999779859999568765557----71366--78---------------------8899999988-
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDS----GFGIQ--IS---------------------PNASRILKRI- 52 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~----g~gi~--l~---------------------p~~~~~L~~l- 52 (380)
||||+|+|||++|+.+++. .+|.|++|.+..+.. ..||. +. |..++.|-+-
T Consensus 14 lVIGsG~AGl~AAi~~~~~-~~V~li~K~~~~~g~s~~a~GGi~a~~~~~Ds~e~h~~Dt~kaG~gl~d~~~v~~l~~~a 92 (556)
T PRK07395 14 LVVGSGAAGLYAALCLPSH-YRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEAVRFLVEQA 92 (556)
T ss_pred EEECCCHHHHHHHHHHCCC-CCEEEEECCCCCCCHHHHHCCCCEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 9999639999999972359-988999899999962667636051727999999999999999558888899999999999
Q ss_pred -CCHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCC---
Q ss_conf -9947898626884306999788544333455432344447824786200013478899732068725642101234---
Q gi|254780168|r 53 -GILDQLEDIWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITH--- 128 (380)
Q Consensus 53 -Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~--- 128 (380)
...+.+.+.|++... . . + .+.......+...+.-.. ....=..+.+.|.+++.+.+++++...+.+.+
T Consensus 93 ~~~i~~L~~~Gv~f~r----~-~-~-~~~~~~~gghs~~R~~~~-~d~tG~~i~~~L~~~~~~~~~I~i~~~~~~~~Ll~ 164 (556)
T PRK07395 93 PEAIASLVELGVAFDR----H-G-Q-HLALTLEAAHSRPRVLHA-ADTTGRAIVTTLTEQVLERPNIEIISQALALDLWL 164 (556)
T ss_pred HHHHHHHHHCCCCCEE----C-C-C-CEEEEECCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEEE
T ss_conf 9999999976997055----7-9-9-440012168666612445-77755899999999999679956988899999999
Q ss_pred -CC-----CCC-CCCC--CCEEEEEEEEECCCCCCC
Q ss_conf -43-----211-2345--310356899743676631
Q gi|254780168|r 129 -PD-----CTQ-ISKI--NNQKPDLLVGADGLNSNI 155 (380)
Q Consensus 129 -~~-----~~~-~~~~--~~~~adlvIgADG~~S~v 155 (380)
.+ ++. +.++ ..++|+-||-|-|..+.+
T Consensus 165 ~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~g~l 200 (556)
T PRK07395 165 EPETGRCQGISLLYQGQITWLRAGAVILATGGGGQV 200 (556)
T ss_pred ECCCCEEEEEEEEECCCEEEEECCEEEECCCCCCCC
T ss_conf 558987999999989969999789899899987112
No 163
>PRK07121 hypothetical protein; Validated
Probab=97.57 E-value=0.00011 Score=50.74 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=30.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 38775389999999999779859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
||||+|.+||++|+..+++|.+|+|+||.+.+
T Consensus 24 vVVGsG~AGl~AA~~Aae~Ga~VivlEK~~~~ 55 (491)
T PRK07121 24 VVVGFGAAGACAAVEAAAAGARVLVLERAAGA 55 (491)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 99896799999999999889928999548999
No 164
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.56 E-value=9.8e-05 Score=50.98 Aligned_cols=33 Identities=39% Similarity=0.706 Sum_probs=30.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
||||||++||++|..|.+.|++|+|+|.++.+.
T Consensus 11 iivGaGlaGL~AA~eL~kaG~~v~ilEar~r~G 43 (450)
T COG1231 11 IIVGAGLAGLSAAYELKKAGYQVQILEARDRVG 43 (450)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 998972688899998764681899986467767
No 165
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.55 E-value=0.00011 Score=50.65 Aligned_cols=33 Identities=30% Similarity=0.636 Sum_probs=30.9
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
||||||++|+++|..++++|.+|.|+||++.+.
T Consensus 5 lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIG 37 (374)
T COG0562 5 LIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIG 37 (374)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 998776268899999997598799996256678
No 166
>PTZ00139 succinate dehydrogenase (flavoprotein) subunit; Provisional
Probab=97.52 E-value=0.00013 Score=50.02 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=29.9
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
||||+|.|||++|+.+++.|.+|+|+||.+..+
T Consensus 38 lVIGsG~AGL~AAi~a~~~G~~V~lleK~~~~~ 70 (622)
T PTZ00139 38 VVVGAGGAGLRAALGLSESGYKTACISKLFPTR 70 (622)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 999966999999999997699089997889999
No 167
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.51 E-value=0.007 Score=38.24 Aligned_cols=55 Identities=22% Similarity=0.221 Sum_probs=35.3
Q ss_pred EECCHHHHHHHHHHHHCCCEEEEEEECCCCCC----C--CCCCCCCCEEEEEEEEECCCCCCC
Q ss_conf 20001347889973206872564210123443----2--112345310356899743676631
Q gi|254780168|r 99 VKRHTLQKILLNHIQTQPLARLHLSTHITHPD----C--TQISKINNQKPDLLVGADGLNSNI 155 (380)
Q Consensus 99 i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~~----~--~~~~~~~~~~adlvIgADG~~S~v 155 (380)
++-..+.+.|.+.++.. ..+...++|+..+ . +..+++...++|.||-|-|..|.-
T Consensus 132 v~p~~~~~al~~~a~~g--~~~~~~~~V~~i~~~g~~~~v~~~~g~~~~ad~vV~AaG~~s~~ 192 (381)
T TIGR03197 132 LSPPQLCRALLAHAGIR--LTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAGQ 192 (381)
T ss_pred ECHHHHHHHHHHHHHHC--CEEEECCEEEEEEEECCEEEEEECCCCEEECCEEEECCCCCHHH
T ss_conf 47899999999999729--78993625899999599899998999889735589855420355
No 168
>TIGR00137 gid gid protein; InterPro: IPR004417 The gid proteins are present in relatively few bacteria but very tightly conserved where they occur. The function of these proteins is unknown. They are closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae..
Probab=97.51 E-value=0.00011 Score=50.73 Aligned_cols=109 Identities=14% Similarity=0.237 Sum_probs=68.2
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC---CCC--CEEEECHHHHHHH---HHCCCHH-HHHHCCCCCCCEEEE
Q ss_conf 387753899999999997798599995687655---577--1366788899999---9889947-898626884306999
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS---DSG--FGIQISPNASRIL---KRIGILD-QLEDIWIEPEDFVFR 71 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~---~~g--~gi~l~p~~~~~L---~~lGi~~-~~~~~~~~~~~~~~~ 71 (380)
.|||||+||.=+|=.||+.|++|.++|-+|.-. ... -+.-+=.|+++.. ...||+. ++++....+ +-
T Consensus 4 ~VIGgGLAGsEAAWqlA~~G~~ViLyEMRP~k~tPAH~t~~lAELVCSNslg~~~l~~aaGlLk~Emr~L~Sli----I~ 79 (444)
T TIGR00137 4 IVIGGGLAGSEAAWQLAKEGVRVILYEMRPKKLTPAHHTEDLAELVCSNSLGAKELARAAGLLKEEMRKLDSLI----IE 79 (444)
T ss_pred EEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEECCHHCCCCCCCCCCHHHHHHHHHHHHH----HH
T ss_conf 89718853468999998489727997538765778766666022320210110101201236899988630799----98
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 7885443334554323444478247862000134788997320687256421012
Q gi|254780168|r 72 SGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHI 126 (380)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v 126 (380)
..+. ...|.++ .+.|+|+.|-+.+-++++.+|++++......
T Consensus 80 aAd~----~~VPAGG---------ALaVDR~iFs~s~Te~v~sHPnv~lireEV~ 121 (444)
T TIGR00137 80 AADE----AAVPAGG---------ALAVDRKIFSESVTEKVKSHPNVTLIREEVT 121 (444)
T ss_pred HHHH----CCCCCCC---------CCHHHHHHHHHHHHHHHHCCCCEEEECCCEE
T ss_conf 7653----3689885---------2011278999988776412884588716400
No 169
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=97.50 E-value=0.00013 Score=50.22 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=29.1
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 3877538999999999977985999956876
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
||||+|.+||++|+..+++|.+|+|+||.+.
T Consensus 8 vVVG~G~AGl~AAi~Aae~Ga~V~llEK~~~ 38 (456)
T PRK08274 8 LVIGGGNAALCAALAAREAGASVLLLEAAPR 38 (456)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEEEECC
T ss_conf 9999889999999999987990999983277
No 170
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.48 E-value=0.00012 Score=50.27 Aligned_cols=32 Identities=22% Similarity=0.520 Sum_probs=29.7
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
||||+| +|+++|+..++.|.+|+|+||.+.+.
T Consensus 13 VVvG~G-aGl~AA~~Aa~~Ga~VivlEK~~~~G 44 (515)
T PRK12837 13 VVAGSG-GGVAGAYTAAREGLSVALVEATDKFG 44 (515)
T ss_pred EEECHH-HHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 998906-99999999998799889997889888
No 171
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.47 E-value=0.00015 Score=49.79 Aligned_cols=30 Identities=30% Similarity=0.622 Sum_probs=27.8
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 387753899999999997798599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
||||||+|||++|+.|+++|.+|.|+-+..
T Consensus 4 iVIGgGLAGl~aai~~a~~G~~~~lvs~Gq 33 (419)
T TIGR03378 4 IIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 999961999999999997799589993783
No 172
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ; InterPro: IPR012831 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobZ, which is essential for cobalamin biosynthesis and is complemented by precorrin 3B synthase CobG (1.3.99.1 from EC). The enzyme has been shown to contain flavin, haem and Fe-S cluster cofactors, and is believed to require dioxygen as a substrate. In Rhodobacter capsulatus, CobZ is found as a N-terminal domain, whereas in other species it exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (IPR012830 from INTERPRO)..
Probab=97.47 E-value=0.00013 Score=50.14 Aligned_cols=170 Identities=12% Similarity=0.208 Sum_probs=82.0
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCC-----CCCEEEECHHH-HHHHHHCCCHHHHHHCCCCC---------
Q ss_conf 3877538999999999977985999956876555-----77136678889-99999889947898626884---------
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSD-----SGFGIQISPNA-SRILKRIGILDQLEDIWIEP--------- 65 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~-----~g~gi~l~p~~-~~~L~~lGi~~~~~~~~~~~--------- 65 (380)
||||||.|||++|+.-++.|-+|.|+|..|.... .|+-+.+.... +.++..-=-.+|++..-.+.
T Consensus 5 LvIGgG~AgLCAAi~ArraGAsVllLeaAPr~~rGGNarHgRN~R~~hd~p~d~~~D~YpaEEf~~dL~~vtgg~t~~~l 84 (467)
T TIGR02485 5 LVIGGGLAGLCAAIEARRAGASVLLLEAAPRDLRGGNARHGRNLRVAHDIPLDFLRDAYPAEEFRRDLLKVTGGRTDERL 84 (467)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHH
T ss_conf 88764258899999986379679840247853257865333451110157888645787378999875431278741157
Q ss_pred CCEEEEECC--------CCCCCCCCCCCCCCCCCCCCEEEEEEC---CHHHHHHHHHHHHCCCEEEEEEECCCCCCC---
Q ss_conf 306999788--------544333455432344447824786200---013478899732068725642101234432---
Q gi|254780168|r 66 EDFVFRSGS--------TLKELSRFSCKNYSRNNWGGIYGVVKR---HTLQKILLNHIQTQPLARLHLSTHITHPDC--- 131 (380)
Q Consensus 66 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~r---~~l~~~L~~~~~~~~~~~~~~~~~v~~~~~--- 131 (380)
..+.+.... .+..+...-.+.....+.. .+.+ +.|.++|+..++.++ +++++...|.....
T Consensus 85 ~~L~i~r~s~~~~w~~~~GVhl~P~~aG~lpysRrt----aF~~GGGkAl~NAly~sAerLG-v~Iry~~~V~ri~~~~~ 159 (467)
T TIGR02485 85 ARLLIERASSILRWLIAHGVHLQPAAAGVLPYSRRT----AFLLGGGKALVNALYASAERLG-VEIRYDAEVERIEREED 159 (467)
T ss_pred HHHHHHHCCHHHHHHHHCCCEECCCCCCCCCHHHCC----CCCCCCHHHHHHHHHHHHHHCC-EEEECCCCCCCCCCCCC
T ss_conf 899887200236899967943366325657601111----1235761899999999885557-25414773000264567
Q ss_pred ------CCC--CCCCCEEEE-EEEEECCCCCC---CHHHCCCCCCC-C-CCCEEEEEE
Q ss_conf ------112--345310356-89974367663---12112853344-3-110157860
Q gi|254780168|r 132 ------TQI--SKINNQKPD-LLVGADGLNSN---IRHYIDTQPIT-F-SGDVVLRCL 175 (380)
Q Consensus 132 ------~~~--~~~~~~~ad-lvIgADG~~S~---vR~~l~~~~~~-~-~~~~~~~~~ 175 (380)
+.. ..++.++++ +|++|=|..|. +|+..+..... + ....+.||+
T Consensus 160 g~~~i~~~~v~~~~~rI~t~a~VlaaGG~ganr~WLr~~~G~~a~geWPadn~~~RGT 217 (467)
T TIGR02485 160 GRAFIAARLVAAADERIATKAVVLAAGGLGANREWLRKAFGSRAEGEWPADNFLVRGT 217 (467)
T ss_pred CCCCCCCEEEECCCCCEEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHCEEECCC
T ss_conf 8620121466226881224688886178888979999836887577885110012588
No 173
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.44 E-value=0.00018 Score=49.13 Aligned_cols=30 Identities=33% Similarity=0.656 Sum_probs=27.8
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 387753899999999997798599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
||||||+|||++|+.++++|.+|+|+-+..
T Consensus 6 lVIGgGLAGl~aAl~~a~~G~~v~lvs~Gq 35 (425)
T PRK05329 6 VVIGGGLAGLTCALALAEAGKRCAIVAKGQ 35 (425)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 999952999999999997799389992784
No 174
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.44 E-value=0.0002 Score=48.83 Aligned_cols=32 Identities=34% Similarity=0.518 Sum_probs=29.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 38775389999999999779859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
||||+|+|||++|+.++++|.+|+|+||....
T Consensus 9 lVIG~G~AGl~AAi~a~~~G~~V~lv~K~~~~ 40 (566)
T PRK06452 9 VIIGAGLAGLMAAHEIASAGYSVAVISKVFPT 40 (566)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 99997499999999998779978999788999
No 175
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.43 E-value=0.0016 Score=42.72 Aligned_cols=29 Identities=31% Similarity=0.566 Sum_probs=25.7
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 3877538999999999977985999956876
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
||||+|+|||++|+.++++ +|+|++|.+.
T Consensus 13 lVIGsG~AGL~AAl~~a~~--~v~vi~k~~~ 41 (507)
T PRK07512 13 VIVGGGLAGLMTALKLAPR--PVVLLSRAPL 41 (507)
T ss_pred EEECCCHHHHHHHHHHCCC--CEEEEEECCC
T ss_conf 9999669999999983307--8399990588
No 176
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.42 E-value=0.00021 Score=48.72 Aligned_cols=33 Identities=33% Similarity=0.472 Sum_probs=29.7
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
||||+|.|||++|+.+++.|.+|+|+||....+
T Consensus 16 lVIGsG~AGl~AA~~a~~~G~~V~li~K~~~~~ 48 (591)
T PRK07057 16 VIVGAGGSGMRASLQLARAGLSVAVLSKVFPTR 48 (591)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 999966999999999987699589997889999
No 177
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.41 E-value=0.00039 Score=46.89 Aligned_cols=32 Identities=28% Similarity=0.513 Sum_probs=28.3
Q ss_pred CEECCHHHHHHHHHHHHHCCC--EEEEEECCCCC
Q ss_conf 387753899999999997798--59999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI--QSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~--~v~i~Er~~~~ 32 (380)
||||||+||+++|..|++.|+ +++|+++.+.+
T Consensus 7 VIIG~G~AG~~aA~~lR~~g~~g~Itli~~E~~~ 40 (400)
T PRK09754 7 IIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL 40 (400)
T ss_pred EEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf 9997759999999999806949979999899999
No 178
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.41 E-value=0.00022 Score=48.59 Aligned_cols=33 Identities=33% Similarity=0.590 Sum_probs=30.0
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
||||+|.|||++|+.++++|.+|+|++|.+..+
T Consensus 9 LVIG~G~AGL~AAl~a~e~G~~V~vl~K~~~~~ 41 (657)
T PRK08626 9 LVIGAGLAGLRVAIAAKERGLDTIVLSLVPAKR 41 (657)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 999965999999999997599579996888999
No 179
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.41 E-value=0.00019 Score=48.99 Aligned_cols=32 Identities=34% Similarity=0.524 Sum_probs=29.6
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 38775389999999999779859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
||||+|+|||.+|+.++++|.+|+|+||.+..
T Consensus 19 lVIG~G~AGl~AAi~a~~~G~~V~vv~K~~~~ 50 (533)
T PRK07804 19 VVIGTGVAGLTAALAAHRAGRRVVVLSKAALT 50 (533)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 99996499999999998679988999788999
No 180
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.40 E-value=0.00021 Score=48.77 Aligned_cols=31 Identities=32% Similarity=0.704 Sum_probs=29.0
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 3877538999999999977985999956876
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
||||+|.|||++|+..+++|.+|+|+||.+.
T Consensus 6 vVVGsG~AGLsAAi~Aae~GakVivlEKe~~ 36 (549)
T PRK12834 6 IVVGAGLAGLVAAAELADAGKRVLLLDQENE 36 (549)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9989678999999999987992799966888
No 181
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.39 E-value=0.0002 Score=48.79 Aligned_cols=32 Identities=31% Similarity=0.391 Sum_probs=29.4
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 38775389999999999779859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
||||+|.|||++|+.++++|.+|+|+||....
T Consensus 12 lVIGsG~AGL~AAi~A~~~G~~V~lv~K~~~~ 43 (631)
T PRK07803 12 VVIGAGGAGLRAVIEARERGLKVAVVCKSLFG 43 (631)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 99996499999999998769987999789999
No 182
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.38 E-value=0.00024 Score=48.32 Aligned_cols=33 Identities=15% Similarity=0.370 Sum_probs=30.1
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
||||+|+|||++|+.++++|.+|.|++|.+..+
T Consensus 7 lVIGsG~AGl~AAi~a~~~G~~V~v~~k~~~~~ 39 (589)
T PRK08641 7 IVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKR 39 (589)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 998986999999999987599779997778898
No 183
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.38 E-value=0.00026 Score=48.03 Aligned_cols=31 Identities=29% Similarity=0.461 Sum_probs=28.9
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 3877538999999999977985999956876
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
||||+|.|||++|+.++++|.+|+|+||...
T Consensus 11 lVIGsG~AGl~AAi~a~~~g~~V~lv~K~~~ 41 (588)
T PRK08958 11 VVIGAGGAGMRAALQISQSGQSCALLSKVFP 41 (588)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 9999549999999999874993899978898
No 184
>pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=97.38 E-value=0.00026 Score=48.11 Aligned_cols=33 Identities=33% Similarity=0.668 Sum_probs=30.9
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
+|||||+.|+-+|..|++.|.+|+|+|+.+.+-
T Consensus 3 ~iiGgG~ig~E~A~~l~~~G~~Vtiie~~~~~l 35 (82)
T pfam00070 3 VVVGGGYIGLEFASALAKLGSKVTVVERRDRLL 35 (82)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 999988999999999986392789981257330
No 185
>TIGR01813 flavo_cyto_c flavocytochrome c; InterPro: IPR010960 This entry describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of Escherichia coli, mitochondria, and other well-characterised systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterised as a water-soluble periplasmic protein with four haem groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiration.; GO: 0000104 succinate dehydrogenase activity.
Probab=97.36 E-value=0.0002 Score=48.90 Aligned_cols=33 Identities=33% Similarity=0.561 Sum_probs=30.5
Q ss_pred CEECCHHHHHHHHHHHHHCC-CEEEEEECCCCCC
Q ss_conf 38775389999999999779-8599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRG-IQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G-~~v~i~Er~~~~~ 33 (380)
||||+|-||+++|+...++| .+|+||||.+.+.
T Consensus 3 vvvGSG~AGlsAA~~A~~~G~~~vv~LEK~~~iG 36 (487)
T TIGR01813 3 VVVGSGFAGLSAALSAKKAGLANVVVLEKMPVIG 36 (487)
T ss_pred EEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 8984276889999999864687637870575232
No 186
>PRK02106 choline dehydrogenase; Validated
Probab=97.35 E-value=0.00022 Score=48.63 Aligned_cols=29 Identities=38% Similarity=0.565 Sum_probs=27.1
Q ss_pred CEECCHHHHHHHHHHHHH-CCCEEEEEECC
Q ss_conf 387753899999999997-79859999568
Q gi|254780168|r 1 MIIGAGISGLTLAASLGH-RGIQSCVLEKK 29 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~-~G~~v~i~Er~ 29 (380)
||||||+||+++|..|++ .|++|.|||+-
T Consensus 9 IIVGgG~AG~vvA~rLse~~~~~VllLEaG 38 (555)
T PRK02106 9 IIIGAGSAGCVLANRLSEDPDVSVLLLEAG 38 (555)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 998966899999999834989859998689
No 187
>PRK13748 putative mercuric reductase; Provisional
Probab=97.32 E-value=0.00032 Score=47.48 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=28.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 387753899999999997798599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
+|||+||+|.++|+..++.|.+|+|+||..
T Consensus 102 iVIG~GpaG~~AA~~Aa~~G~kValVE~~~ 131 (561)
T PRK13748 102 AVIGSGGAAMAAALKAVEQGARVTLIERGT 131 (561)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 998958899999999997899799994799
No 188
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit; InterPro: IPR012744 This entry describes NirB, the large subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirD, the small subunit (IPR012748 from INTERPRO). In a few bacteria such as Klebsiella pneumoniae and in fungi, the two regions are fused.; GO: 0008942 nitrite reductase [NAD(P)H] activity, 0050660 FAD binding, 0050661 NADP binding, 0042128 nitrate assimilation.
Probab=97.32 E-value=0.00064 Score=45.38 Aligned_cols=102 Identities=20% Similarity=0.264 Sum_probs=60.0
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 38775389999999999779859999568765557713667888999999889947898626884306999788544333
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELS 80 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
.|||||+=||=+|.+|.+.|++|-|+|-.|.+= .+-||+.| -++...-....++.|+.+...
T Consensus 151 aViGGGLLGLEAA~aL~~LG~~v~Vi~~~p~LM------------~~QLD~~a--G~lL~~~le~~G~~~l~Gt~k---- 212 (813)
T TIGR02374 151 AVIGGGLLGLEAARALKNLGMDVSVIELAPFLM------------AKQLDQTA--GRLLQRELEKKGLTVLLGTEK---- 212 (813)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEHHHHHHHHH------------HHHHHHHH--HHHHHHHHHHCCCEEEECCCC----
T ss_conf 588674158899999987797064467648989------------99999999--999999998579579861761----
Q ss_pred CCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCC
Q ss_conf 455432344447824786200013478899732068725642101234432112345310356899743676631
Q gi|254780168|r 81 RFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHPDCTQISKINNQKPDLLVGADGLNSNI 155 (380)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~adlvIgADG~~S~v 155 (380)
..+.+.....++..+..+|.||+.++||+||=|=|++-+.
T Consensus 213 -----------------------------------~t~eiv~~~d~~~~~~~rf~DG~~l~aDlvv~A~GirP~~ 252 (813)
T TIGR02374 213 -----------------------------------DTVEIVGEDDVEKVERLRFKDGSSLEADLVVFAAGIRPRD 252 (813)
T ss_pred -----------------------------------CEEEEEECCCHHHHCEEECCCCCEEEECEEEEECCCCCCH
T ss_conf -----------------------------------1057641564012312242389788703799951566636
No 189
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.31 E-value=0.00028 Score=47.84 Aligned_cols=31 Identities=23% Similarity=0.479 Sum_probs=28.8
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 3877538999999999977985999956876
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
||||+|.|||++|+.+++.|.+|+|+||...
T Consensus 16 lVIGsG~AGL~AAi~a~~~G~~V~li~K~~~ 46 (598)
T PRK09078 16 VVVGAGGAGLRATLGMAEAGLRTACITKVFP 46 (598)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 9999569999999999874990799978899
No 190
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.31 E-value=0.00033 Score=47.34 Aligned_cols=33 Identities=33% Similarity=0.439 Sum_probs=29.2
Q ss_pred CEECCHHHHHHHHHHHHHC--CCEEEEEECCCCCC
Q ss_conf 3877538999999999977--98599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHR--GIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~--G~~v~i~Er~~~~~ 33 (380)
|||||||||+++|..|++. +.+|+|+|+.+.+.
T Consensus 4 VIIG~G~AG~saA~~l~~~~~~~~I~v~e~~~~~~ 38 (443)
T PRK09564 4 IIIGGTAAGTSAAAKAKRLNKELEIVVYEKTDIIS 38 (443)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC
T ss_conf 99996099999999998149399999994889877
No 191
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.28 E-value=0.00035 Score=47.21 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=28.0
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 387753899999999997798599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
|||||||+|.++|+.+++.|.+|.|+|+..
T Consensus 45 vVIG~GpgG~~AA~~Aa~~G~kValIE~~~ 74 (541)
T PTZ00052 45 VVIGGGPGGMASAKEAAAHGAKVLLFDYVK 74 (541)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 999978899999999998899099994245
No 192
>KOG1276 consensus
Probab=97.27 E-value=0.0006 Score=45.59 Aligned_cols=61 Identities=25% Similarity=0.463 Sum_probs=42.6
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEE--EEECCCCCC----C-C-CCEE-------EE------CHHHHHHHHHCCCHHHHH
Q ss_conf 387753899999999997798599--995687655----5-7-7136-------67------888999999889947898
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSC--VLEKKDQLS----D-S-GFGI-------QI------SPNASRILKRIGILDQLE 59 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~--i~Er~~~~~----~-~-g~gi-------~l------~p~~~~~L~~lGi~~~~~ 59 (380)
.|||||++||++|..|++.+-+|+ |||+.+... . . ..++ +| ..+.+..+++||+.|++.
T Consensus 15 aVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl~~e~~ 94 (491)
T KOG1276 15 AVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGLEDELQ 94 (491)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEE
T ss_conf 99888536889999998548995599984278666525632689854421377756768830457899998708631143
Q ss_pred HC
Q ss_conf 62
Q gi|254780168|r 60 DI 61 (380)
Q Consensus 60 ~~ 61 (380)
..
T Consensus 95 ~i 96 (491)
T KOG1276 95 PI 96 (491)
T ss_pred EC
T ss_conf 35
No 193
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.26 E-value=0.00096 Score=44.19 Aligned_cols=133 Identities=13% Similarity=0.106 Sum_probs=59.7
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHH---HHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCC
Q ss_conf 38775389999999999779859999568765557713667888---999999889947898626884306999788544
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPN---ASRILKRIGILDQLEDIWIEPEDFVFRSGSTLK 77 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~---~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~ 77 (380)
|||||||+|.++|..+ .|.+|.|+||.+ .| |..++-. +..++....+...+..... .++.. .
T Consensus 6 iVIGaGpgG~~~a~~~--ag~kValvEk~~----~G-GtCln~GCIPsK~ll~~a~~~~~~~~~~~--~Gi~~---~--- 70 (452)
T TIGR03452 6 IIIGTGSGNSIPDPRF--ADKRIAIVEKGT----FG-GTCLNVGCIPTKMFVYAAEVAQSIGESAR--LGIDA---E--- 70 (452)
T ss_pred EEECCCHHHHHHHHHH--CCCEEEEEECCC----CC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHH--CCEEC---C---
T ss_conf 9999868999999998--299099997899----27-85802358889999999999999977773--58325---6---
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHH---HHHCCCEEEEEE-ECCCCCCCCCCCCCCCEEEEEEEEECCCCC
Q ss_conf 3334554323444478247862000134788997---320687256421-012344321123453103568997436766
Q gi|254780168|r 78 ELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNH---IQTQPLARLHLS-THITHPDCTQISKINNQKPDLLVGADGLNS 153 (380)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~---~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~adlvIgADG~~S 153 (380)
...+++.+....... .+.+......+. .....++++..+ .+..+...+++.+++.++++.+|-|.|.+.
T Consensus 71 -~~~~~~~~~~~r~~~------~~~~~~~~~~~~~~~~~~~~~V~~~~G~a~f~~~~tv~v~~g~~~~a~~iiIATGs~P 143 (452)
T TIGR03452 71 -IDSVRWPDIVSRVFG------DRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGSRP 143 (452)
T ss_pred -CCCCCHHHHHHHHHH------HHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEECCCCCEEEECEEEECCCCCC
T ss_conf -673079999999987------6789997559999853677886999989999378579818987898466999379988
Q ss_pred CC
Q ss_conf 31
Q gi|254780168|r 154 NI 155 (380)
Q Consensus 154 ~v 155 (380)
.+
T Consensus 144 ~~ 145 (452)
T TIGR03452 144 YI 145 (452)
T ss_pred CC
T ss_conf 78
No 194
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.24 E-value=0.00039 Score=46.84 Aligned_cols=32 Identities=31% Similarity=0.567 Sum_probs=28.4
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 38775389999999999779859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
||||+|.|||++|+.++++|.+|+|+++...+
T Consensus 37 lVIGsG~AGL~AAi~aa~~G~~V~vl~~~~~~ 68 (638)
T PRK07573 37 IVVGTGLAGASAAATLGELGYNVKVFCYQDSP 68 (638)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 99996699999999999749956999922899
No 195
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.24 E-value=0.00054 Score=45.89 Aligned_cols=32 Identities=31% Similarity=0.666 Sum_probs=24.9
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 38775389999999999779859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
+|||||+.|+-+|..|++.|.+|+|+|+.+.+
T Consensus 141 vViGgG~IGlE~A~~l~~~G~~Vtvve~~~~i 172 (427)
T TIGR03385 141 VIIGGGYIGLEMVEALRERGKNVTLIHRSDKI 172 (427)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 99996399999999999769989999846833
No 196
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.20 E-value=0.00051 Score=46.07 Aligned_cols=31 Identities=35% Similarity=0.618 Sum_probs=29.0
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 3877538999999999977985999956876
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
||||+|+|||++|+.++++|.+|+|++|.+.
T Consensus 5 lVVGsG~AGl~AAl~a~~~g~~v~li~k~~~ 35 (464)
T PRK08401 5 GIVGGGLAGLTAAISLAKKGFDVTVIGPGSK 35 (464)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 9989769999999999974996999958999
No 197
>PRK08275 putative oxidoreductase; Provisional
Probab=97.18 E-value=0.00061 Score=45.55 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=29.2
Q ss_pred CEECCHHHHHHHHHHHHHC--CCEEEEEECCCCCC
Q ss_conf 3877538999999999977--98599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHR--GIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~--G~~v~i~Er~~~~~ 33 (380)
||||+|+|||.+|+.++++ |.+|+|++|.+..+
T Consensus 13 LVIGsG~AGl~AAi~a~~~~~~~~V~li~K~~~~~ 47 (554)
T PRK08275 13 LVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKR 47 (554)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 99997199999999999868989799997999898
No 198
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.15 E-value=0.00063 Score=45.42 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=28.6
Q ss_pred CEECCHHHHHHHHHHHHHC--CCEEEEEECCCCC
Q ss_conf 3877538999999999977--9859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHR--GIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~--G~~v~i~Er~~~~ 32 (380)
||||+|.|||++|+.++++ |.+|+|+||....
T Consensus 8 lVIGsG~AGl~AAi~a~~~~~g~~V~lv~K~~~~ 41 (582)
T PRK09231 8 AIIGAGGAGLRAAIAAAEANPNLKIALISKVYPM 41 (582)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 9999669999999999986899859999789989
No 199
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.14 E-value=0.0086 Score=37.63 Aligned_cols=32 Identities=19% Similarity=0.635 Sum_probs=23.8
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 38775389999999999779859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
+|||||..|+-+|..|++.|.+|+|+|+++.+
T Consensus 182 ~ViGgG~ig~E~A~~~~~lG~~Vtlv~~~~~~ 213 (467)
T PRK07845 182 IVVGSGVTGAEFASAYTELGVKVTLVSSRDRV 213 (467)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 99898799999999999739879999955744
No 200
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.12 E-value=0.00065 Score=45.32 Aligned_cols=33 Identities=27% Similarity=0.457 Sum_probs=30.6
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
||||||.|||.+|+.++.+|.+|.|+||.+..+
T Consensus 10 vVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 10 VVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 998784888999999996699579997236889
No 201
>PRK06854 adenylylsulfate reductase; Validated
Probab=97.08 E-value=0.00082 Score=44.65 Aligned_cols=32 Identities=28% Similarity=0.440 Sum_probs=28.9
Q ss_pred CEECCHHHHHHHHHHHHH--CCCEEEEEECCCCC
Q ss_conf 387753899999999997--79859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGH--RGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~--~G~~v~i~Er~~~~ 32 (380)
||||+|.|||.+|+.+++ .|.+|+|++|...-
T Consensus 15 LVIGsG~AGL~AAl~a~e~~~~~~V~lvsK~~~~ 48 (610)
T PRK06854 15 LIIGGGMAGCGAAFEAAYWAPGLKVLLVEKANID 48 (610)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 9999769999999999877899979999899999
No 202
>KOG2665 consensus
Probab=97.06 E-value=0.0033 Score=40.52 Aligned_cols=48 Identities=33% Similarity=0.535 Sum_probs=38.4
Q ss_pred CEECCHHHHHHHHHHHHHC--CCEEEEEECCCCCCC---------CCCEEEECHHHHHH
Q ss_conf 3877538999999999977--985999956876555---------77136678889999
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHR--GIQSCVLEKKDQLSD---------SGFGIQISPNASRI 48 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~--G~~v~i~Er~~~~~~---------~g~gi~l~p~~~~~ 48 (380)
||||||++||+.|..|.-. +.+|.|+|+..++.. +-+||-..|+++++
T Consensus 52 VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKA 110 (453)
T KOG2665 52 VVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKA 110 (453)
T ss_pred EEECCCEEEHHHHHHHHHCCCCCEEEEEEHHHHHCEEECCCCCCEEEEEEEECCCCCCH
T ss_conf 99888432225567776317872577540001021551256665056434417766000
No 203
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.03 E-value=0.00099 Score=44.08 Aligned_cols=33 Identities=27% Similarity=0.530 Sum_probs=28.6
Q ss_pred CEECCHHHHHHHHHHHHH---CCCEEEEEECCCCCC
Q ss_conf 387753899999999997---798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGH---RGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~---~G~~v~i~Er~~~~~ 33 (380)
||||+|+|||++|+.+++ +|.+|+|+||....+
T Consensus 9 lVIG~G~AGl~AA~~a~~~~~~~~~V~lv~K~~~~~ 44 (582)
T PRK06069 9 VIVGSGLAGLRAAVAAARASGGKISIAVVSKTQAMR 44 (582)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 999973999999999998538998699997989999
No 204
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=97.00 E-value=0.012 Score=36.65 Aligned_cols=161 Identities=17% Similarity=0.194 Sum_probs=81.4
Q ss_pred CEECCHHHHHHHHHHHHHC--CCEEEEEECCCCCCC--------CCCEE------EECH----------HHHHHHHHCC-
Q ss_conf 3877538999999999977--985999956876555--------77136------6788----------8999999889-
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHR--GIQSCVLEKKDQLSD--------SGFGI------QISP----------NASRILKRIG- 53 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~--G~~v~i~Er~~~~~~--------~g~gi------~l~p----------~~~~~L~~lG- 53 (380)
|+||||+.|.|+|..|++. .++++||||-+.+.. .|.|- ..+| .++++=+++.
T Consensus 10 vLIGaGIMsaTL~~lL~el~P~~~I~l~Erl~~~A~ESS~~wNNAGTGHaa~CElNYTp~~~dg~i~i~KA~~IneqFe~ 89 (497)
T PRK13339 10 VLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESSNERNNAGTGHAALCELNYTVQQADGSIDIKKAKEINEQFEI 89 (497)
T ss_pred EEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHH
T ss_conf 99895288999999999769987489998147545440788665522100102204887656982417999999999999
Q ss_pred ---CHHHHHHCC---------CCCCCEEEEECCCCCC--------CCC---CCCCCCCCCC---------------CCCE
Q ss_conf ---947898626---------8843069997885443--------334---5543234444---------------7824
Q gi|254780168|r 54 ---ILDQLEDIW---------IEPEDFVFRSGSTLKE--------LSR---FSCKNYSRNN---------------WGGI 95 (380)
Q Consensus 54 ---i~~~~~~~~---------~~~~~~~~~~~~~~~~--------~~~---~~~~~~~~~~---------------~~~~ 95 (380)
.|..+.+.+ .+..++.|..|..... +.. |+...+.++. ...+
T Consensus 90 S~QfWs~lv~~g~l~~p~~FI~~~PHmSfV~Ge~nv~fLrkRyeal~~~~lF~~MefseD~~~i~~w~PLvm~gR~~~e~ 169 (497)
T PRK13339 90 SKQFWGHLVKKGTIGNPREFINPLPHISFVRGKNNVKFLKKRFEALKQHPMFDNIEYTEDIEVMAKWMPLMMPGREADEI 169 (497)
T ss_pred HHHHHHHHHHCCCCCCHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHCCEEECCCCCCCC
T ss_conf 99999999865787985787377982467567588899999999873487877768605989997537752269897885
Q ss_pred --------EEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCCCC-------CCCCC-----CCCEEEEEEEEECCCCCC-
Q ss_conf --------786200013478899732068725642101234432-------11234-----531035689974367663-
Q gi|254780168|r 96 --------YGVVKRHTLQKILLNHIQTQPLARLHLSTHITHPDC-------TQISK-----INNQKPDLLVGADGLNSN- 154 (380)
Q Consensus 96 --------~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~-----~~~~~adlvIgADG~~S~- 154 (380)
...|.-..|-+.|.+.+...++++++++++|++... +.+.+ ..+++|++|+-.=|.+|-
T Consensus 170 vAAtr~~~GTDVdFGaLTr~l~~~l~~~~~~~v~~~~eV~~i~r~~dg~w~v~v~~~~~~~~~~~~A~fVFvGAGG~sL~ 249 (497)
T PRK13339 170 MAASKIDEGTDVNFGALTRKMAKSLEAHPNAQVQYNHEVVDLERLSDGGWEVTVKDRNTGGKREQVADYVFIGAGGGAIP 249 (497)
T ss_pred EEEEECCCCEEECHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCCCEEEEEEECCCCCEEEEEECEEEECCCHHHHH
T ss_conf 55882578534018999999999997489839994788632177899988999996578975999936799888737789
Q ss_pred CHHHCCC
Q ss_conf 1211285
Q gi|254780168|r 155 IRHYIDT 161 (380)
Q Consensus 155 vR~~l~~ 161 (380)
+-+..+.
T Consensus 250 LLQksgi 256 (497)
T PRK13339 250 LLQKSGI 256 (497)
T ss_pred HHHHCCC
T ss_conf 9998499
No 205
>TIGR02731 phytoene_desat phytoene desaturase; InterPro: IPR014102 Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme phytoene desaturase (also called phytoene dehydrogenase). This HMM does not include plant chloroplast transit peptides and the entry does not contain zeta-carotene desaturase, which is a closely related family in the same pathway..
Probab=96.99 E-value=0.0028 Score=40.97 Aligned_cols=84 Identities=33% Similarity=0.525 Sum_probs=57.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCC--------CC----CEE----EECHHHHHHHHHCCCHHHHHHCCCC
Q ss_conf 3877538999999999977985999956876555--------77----136----6788899999988994789862688
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSD--------SG----FGI----QISPNASRILKRIGILDQLEDIWIE 64 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~--------~g----~gi----~l~p~~~~~L~~lGi~~~~~~~~~~ 64 (380)
+|.|||++||++|-+|..+||...|+|++.-+.- .| .|+ .-.||-++.|++|++.|++.= .
T Consensus 3 ~~aGaGlaGl~~akyl~daGh~Pi~~e~~~vlGG~vaaW~d~dGdW~etGlh~ffGayPn~~~l~~el~i~drlqW---k 79 (454)
T TIGR02731 3 AIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNILQLLKELNIEDRLQW---K 79 (454)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEECHHHCCCCEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHCCCHHHHHH---H
T ss_conf 7722745567788787635896268632100355023322478861131045543145789999986150222222---1
Q ss_pred CCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 43069997885443334554323
Q gi|254780168|r 65 PEDFVFRSGSTLKELSRFSCKNY 87 (380)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~ 87 (380)
...+.|...+....+++++..+.
T Consensus 80 ~h~~if~~~~~PG~~s~f~~P~~ 102 (454)
T TIGR02731 80 EHSLIFNQPDKPGTLSRFDFPDI 102 (454)
T ss_pred HHEEEEECCCCCCCCEECCCCCC
T ss_conf 10013404688874001047787
No 206
>pfam06039 Mqo Malate:quinone oxidoreductase (Mqo). This family consists of several bacterial Malate:quinone oxidoreductase (Mqo) proteins (EC:1.1.99.16). Mqo takes part in the citric acid cycle. It oxidizes L-malate to oxaloacetate and donates electrons to ubiquinone-1 and other artificial acceptors or, via the electron transfer chain, to oxygen. NAD is not an acceptor and the natural direct acceptor for the enzyme is most likely a quinone. The enzyme is therefore called malate:quinone oxidoreductase, abbreviated to Mqo. Mqo is a peripheral membrane protein and can be released from the membrane by addition of chelators.
Probab=96.98 E-value=0.018 Score=35.49 Aligned_cols=161 Identities=20% Similarity=0.233 Sum_probs=81.6
Q ss_pred CEECCHHHHHHHHHHHHHC--CCEEEEEECCCCCCC--------CCCE---E---EECH----------HHHHHHHHCCC
Q ss_conf 3877538999999999977--985999956876555--------7713---6---6788----------89999998899
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHR--GIQSCVLEKKDQLSD--------SGFG---I---QISP----------NASRILKRIGI 54 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~--G~~v~i~Er~~~~~~--------~g~g---i---~l~p----------~~~~~L~~lGi 54 (380)
||||||+.|.|++..|++. ..++.|+||-+.+.. .|.| . ..+| .++++-+++.+
T Consensus 8 vlIGgGImsatL~~~L~~l~p~~~I~l~Erl~~~A~eSS~~wNNAgTgHaa~cElNYTpe~~dg~i~i~KA~~IneqFe~ 87 (489)
T pfam06039 8 VLIGAGIMSATLGVLLKELEPNWSIEVFERLDGVAQESSNPWNNAGTGHSALCELNYTPEGADGSIDISKAVKINEQFQI 87 (489)
T ss_pred EEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99996288999999999759987489998147525550788665521000213414887656884427999999999999
Q ss_pred ----HHHHHHCC---------CCCCCEEEEECCCCCC--------CCC---CCCCCCCC----------------CCCCC
Q ss_conf ----47898626---------8843069997885443--------334---55432344----------------44782
Q gi|254780168|r 55 ----LDQLEDIW---------IEPEDFVFRSGSTLKE--------LSR---FSCKNYSR----------------NNWGG 94 (380)
Q Consensus 55 ----~~~~~~~~---------~~~~~~~~~~~~~~~~--------~~~---~~~~~~~~----------------~~~~~ 94 (380)
|..+.+.+ .+..++.+..|..... +.. ++...+.. +....
T Consensus 88 Srqfws~lv~~g~l~~p~~fI~~~Phmsfv~Ge~~v~fLrkRye~lk~~~lF~~Me~seD~~~i~~w~PLv~~gR~~~e~ 167 (489)
T pfam06039 88 SRQFWAYLVKEGVLSNPKSFINPVPHMSFVWGEDNVAFLKKRYEALKQNPLFEGMEYSEDPEKIKEWVPLMMEGRDPDEP 167 (489)
T ss_pred HHHHHHHHHHCCCCCCHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHCCCCCCCCCCCCC
T ss_conf 99999999875898985785056881589877698899999999850587867778447989998644800379797885
Q ss_pred E-------EEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCCCC-------CCCC-----CCCCEEEEEEEEECCCCCC-
Q ss_conf 4-------786200013478899732068725642101234432-------1123-----4531035689974367663-
Q gi|254780168|r 95 I-------YGVVKRHTLQKILLNHIQTQPLARLHLSTHITHPDC-------TQIS-----KINNQKPDLLVGADGLNSN- 154 (380)
Q Consensus 95 ~-------~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~~~-------~~~~-----~~~~~~adlvIgADG~~S~- 154 (380)
. ...|.-..|-+.|.+.+....++.++.+++|.+... +++. +..+++|++|+-+=|.+|-
T Consensus 168 vAat~~~~GTdVnFGaLT~~l~~~l~~~~~~~l~~~~eV~~i~r~~dg~w~v~v~~~~~~~~~~~~A~fVfvgAGG~sL~ 247 (489)
T pfam06039 168 IAATRIDEGTDVNFGALTRQLFKYLQQKPNVELQYNHEVRDIKRNSDGTWTVTVKDLNTGDKRTIKAKFVFIGAGGGALP 247 (489)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCCCEEEEEEECCCCCEEEEEECEEEECCCHHHHH
T ss_conf 57994488740118999999999985189828992788534588899987999986578974899826799888757789
Q ss_pred CHHHCCC
Q ss_conf 1211285
Q gi|254780168|r 155 IRHYIDT 161 (380)
Q Consensus 155 vR~~l~~ 161 (380)
+-+..+.
T Consensus 248 LlQksgi 254 (489)
T pfam06039 248 LLQKSGI 254 (489)
T ss_pred HHHHCCC
T ss_conf 9998198
No 207
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.98 E-value=0.0012 Score=43.40 Aligned_cols=32 Identities=41% Similarity=0.560 Sum_probs=27.5
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 38775389999999999779859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
+|||||..|+-+|..|++.|.+|+|+|+.+.+
T Consensus 148 vVIGgG~IGlE~A~~l~~~G~~Vtvve~~~~~ 179 (400)
T PRK09754 148 VIVGAGTIGLELAASATQRRCKVTVIELAATV 179 (400)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 99885589999999999759948999534634
No 208
>KOG0685 consensus
Probab=96.98 E-value=0.0011 Score=43.76 Aligned_cols=33 Identities=45% Similarity=0.729 Sum_probs=28.4
Q ss_pred CEECCHHHHHHHHHHHHHCC-CEEEEEECCCCCC
Q ss_conf 38775389999999999779-8599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRG-IQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G-~~v~i~Er~~~~~ 33 (380)
+|||||+|||++|..|-++| .+|+|+|....+.
T Consensus 25 vIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIG 58 (498)
T KOG0685 25 VIIGAGIAGLAAATRLLENGFIDVLILEASDRIG 58 (498)
T ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf 9989856779999999982896489997046667
No 209
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.97 E-value=0.00092 Score=44.29 Aligned_cols=30 Identities=40% Similarity=0.626 Sum_probs=28.5
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 387753899999999997798599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
||||+|.+|+++|..|+..|++|+|+|+-+
T Consensus 11 vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 11 VIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred EEECCCCHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 998987136899999857998289995788
No 210
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=96.96 E-value=0.00099 Score=44.07 Aligned_cols=30 Identities=30% Similarity=0.616 Sum_probs=27.6
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 387753899999999997798599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
+|||||+||+++|+.|+++|.+|.|+-+..
T Consensus 6 ~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 6 AIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 997672888899999996588079985770
No 211
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.93 E-value=0.0017 Score=42.51 Aligned_cols=46 Identities=17% Similarity=0.398 Sum_probs=32.5
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHH
Q ss_conf 38775389999999999779859999568765557713667888999999
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILK 50 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~ 50 (380)
+|||||..|+-+|..|++.|.+|+|+|+.+.+-.. .+.+...+.++
T Consensus 153 vViGgG~ig~E~A~~l~~~G~~Vtiv~~~~~~l~~----~~d~~~~~~~~ 198 (443)
T PRK09564 153 VIIGAGFIGLEVVEAAKKLGKNVRIIQLEKRILPD----SFDKEITDVME 198 (443)
T ss_pred EEECCHHHHHHHHHHHHHCCCEEEEEEECCCCCCC----CCCHHHHHHHH
T ss_conf 99997099999999998669889999957834556----67899999999
No 212
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=96.92 E-value=0.0015 Score=42.80 Aligned_cols=54 Identities=37% Similarity=0.591 Sum_probs=41.2
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCCC---------CCCCEEE-----------ECHHHHHHHHHCCCHH
Q ss_conf 87753899999999997798599995687655---------5771366-----------7888999999889947
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLS---------DSGFGIQ-----------ISPNASRILKRIGILD 56 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~---------~~g~gi~-----------l~p~~~~~L~~lGi~~ 56 (380)
|||+|++||++|..|++. ++|++||....+. ..+.|+. --||-.+.++.+|+-.
T Consensus 13 VIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~t 86 (447)
T COG2907 13 VIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVDT 86 (447)
T ss_pred EECCCCHHHHHHHHHHCC-CCEEEEECCCCCCCCCCEEECCCCCCCEEECCEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 972562014457753235-52478860662467531011024687335312048854777502999999809987
No 213
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.90 E-value=0.0015 Score=42.83 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=29.4
Q ss_pred CEECCHHHHHHHHHHHHHCC--CEEEEEECCCCCCC
Q ss_conf 38775389999999999779--85999956876555
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRG--IQSCVLEKKDQLSD 34 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G--~~v~i~Er~~~~~~ 34 (380)
||||||+||.++|..|++.+ .+|+|||+.+.+.-
T Consensus 5 VIIG~g~AG~~aA~~lrk~~~~~eItvi~~e~~~~y 40 (438)
T PRK13512 5 VVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSF 40 (438)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 998984999999999994391999999968998887
No 214
>PRK09897 hypothetical protein; Provisional
Probab=96.90 E-value=0.0053 Score=39.11 Aligned_cols=141 Identities=22% Similarity=0.265 Sum_probs=67.8
Q ss_pred EECCHHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCEEEEC--HHHHHHHHHCCCHHHHHHCCCCCCCE---EEEECC
Q ss_conf 8775389999999999779--8599995687655577136678--88999999889947898626884306---999788
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRG--IQSCVLEKKDQLSDSGFGIQIS--PNASRILKRIGILDQLEDIWIEPEDF---VFRSGS 74 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G--~~v~i~Er~~~~~~~g~gi~l~--p~~~~~L~~lGi~~~~~~~~~~~~~~---~~~~~~ 74 (380)
||||||.|+.+-..|-+.+ ++++||||..... .|.=.+ .|+-..|... ...-+|+-.. .+....
T Consensus 6 ivG~GPtgiYt~~~Ll~~~~~~~I~ifE~~~~aG---~GMPYs~e~ns~~mlaNI------as~EIPpi~~t~~~WL~~q 76 (535)
T PRK09897 6 IVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAG---VGMPYSDEENSKMMLANI------ASIEIPPIYCTYLEWLQKQ 76 (535)
T ss_pred EECCCCCHHHHHHHHHCCCCCCEEEEEECCCCCC---CCCCCCCCCCHHHHHHHH------HCCCCCCCHHHHHHHHHHC
T ss_conf 9667862499999986469982699982156677---899868544558887503------1055885135699998738
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCHHHH-------HHHHHHHHCC-CEEEEEEECCCCCC----CCCCC---CCCC
Q ss_conf 54433345543234444782478620001347-------8899732068-72564210123443----21123---4531
Q gi|254780168|r 75 TLKELSRFSCKNYSRNNWGGIYGVVKRHTLQK-------ILLNHIQTQP-LARLHLSTHITHPD----CTQIS---KINN 139 (380)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~-------~L~~~~~~~~-~~~~~~~~~v~~~~----~~~~~---~~~~ 139 (380)
....+.++......-.. +-.++|--|-+ .|.++++..+ .+.++.+++|++.. ++.+. ....
T Consensus 77 ~~~~L~~~~id~~~l~~----rqflPRiLlGeYl~~QF~~Lve~a~~~G~~i~Vh~~~~VtDi~~~~~gv~l~~~~~~~~ 152 (535)
T PRK09897 77 EASHLQRYGVKKETLHD----RQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPS 152 (535)
T ss_pred CHHHHHHCCCCHHHCCC----CCEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEECCCCEEEEECCCCCC
T ss_conf 88789871998322641----01004888889999999999999986596699975766676443699559983378876
Q ss_pred EEEEEEEEECCCCCCC
Q ss_conf 0356899743676631
Q gi|254780168|r 140 QKPDLLVGADGLNSNI 155 (380)
Q Consensus 140 ~~adlvIgADG~~S~v 155 (380)
...|++|-|-|-.=+-
T Consensus 153 ~~FD~vVIaTGH~WP~ 168 (535)
T PRK09897 153 ETFDLAVIATGHVWPD 168 (535)
T ss_pred CCCEEEEEECCCCCCC
T ss_conf 4320799807987998
No 215
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=96.89 E-value=0.0012 Score=43.43 Aligned_cols=96 Identities=19% Similarity=0.259 Sum_probs=56.6
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCC------CCCEEEECH--------H----HHHHHHHCC-CHHHH-HH
Q ss_conf 3877538999999999977985999956876555------771366788--------8----999999889-94789-86
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSD------SGFGIQISP--------N----ASRILKRIG-ILDQL-ED 60 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~------~g~gi~l~p--------~----~~~~L~~lG-i~~~~-~~ 60 (380)
+|||||.||+-+|+.++|.|++|.+||-+|...+ .-+-..++| + =.+.++.|| +--.. ..
T Consensus 7 iVIGgGhAG~EAA~a~Ar~G~~v~L~emrp~~~tpah~~d~iaem~CnpSigg~~~~~akG~L~~EidaLgglm~~~aD~ 86 (434)
T PRK05335 7 NVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDKFAELVCSNSFRSDSLTNAVGLLKEEMRRLGSLIIEAADA 86 (434)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99898689999999999689967999933566777624666368735645688864442058999999846989999898
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 2688430699978854433345543234444782478620001347889973206872564210
Q gi|254780168|r 61 IWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLST 124 (380)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~ 124 (380)
.++ +.. ....|+|..+.+.+.+.+...++.++....
T Consensus 87 ~~v-------------------PAg---------~alaVDR~~y~~~m~~~l~~~pni~i~~~e 122 (434)
T PRK05335 87 HRV-------------------PAG---------GALAVDREGFSAYVTEALKNHPLITVIREE 122 (434)
T ss_pred HCC-------------------CCC---------CHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 667-------------------872---------178998999999999999749994999844
No 216
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=96.88 E-value=0.0017 Score=42.54 Aligned_cols=34 Identities=29% Similarity=0.578 Sum_probs=30.6
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf 3877538999999999977985999956876555
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSD 34 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~ 34 (380)
+|||||..|+=+|..+++.|.+|||+|-.+.+-+
T Consensus 182 vIiGGGVIG~EfA~~f~~lG~~VTv~E~~drILp 215 (481)
T TIGR01350 182 VIIGGGVIGVEFASIFASLGVKVTVIEMLDRILP 215 (481)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 9987866778899999853980899945750035
No 217
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.86 E-value=0.0016 Score=42.62 Aligned_cols=33 Identities=21% Similarity=0.483 Sum_probs=28.1
Q ss_pred CEECCHHHHHHHHHHHHHCC--CEEEEEECCCCCC
Q ss_conf 38775389999999999779--8599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRG--IQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G--~~v~i~Er~~~~~ 33 (380)
||||+|.|||++|+.++++| .+|+|+||....+
T Consensus 7 LVIGsG~AGl~AA~~a~~~~~~~~V~lv~K~~~~~ 41 (575)
T PRK05945 7 VIVGGGLAGCRAALEIARLDPSLDVAVVAKTHPIR 41 (575)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 99996599999999999878998299997889999
No 218
>KOG0399 consensus
Probab=96.86 E-value=0.0012 Score=43.52 Aligned_cols=32 Identities=38% Similarity=0.611 Sum_probs=29.8
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 87753899999999997798599995687655
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
|||.||+||.+|-.|-+.||.|+||||+..+.
T Consensus 1790 iigsgpaglaaadqlnk~gh~v~vyer~dr~g 1821 (2142)
T KOG0399 1790 IIGSGPAGLAAADQLNKAGHTVTVYERSDRVG 1821 (2142)
T ss_pred EECCCCHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf 97468414668999864476799997157767
No 219
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.78 E-value=0.0037 Score=40.14 Aligned_cols=33 Identities=24% Similarity=0.499 Sum_probs=25.0
Q ss_pred CEECCHHHHHHHHHHHHHC--CCEEEEEECCCCCC
Q ss_conf 3877538999999999977--98599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHR--GIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~--G~~v~i~Er~~~~~ 33 (380)
+|||+|++|+.+|..|.+. +.+++++.+.+...
T Consensus 2 vivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~ 36 (415)
T COG0446 2 VIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYS 36 (415)
T ss_pred EEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 89825599999999998507778859995235445
No 220
>KOG1335 consensus
Probab=96.75 E-value=0.0047 Score=39.46 Aligned_cols=32 Identities=28% Similarity=0.562 Sum_probs=29.7
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 38775389999999999779859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
+|||+||+|-.+|+.-+|.|++...+|++..+
T Consensus 43 vvIG~GpGGyvAAikAaQlGlkTacvEkr~~L 74 (506)
T KOG1335 43 VVIGGGPGGYVAAIKAAQLGLKTACVEKRGTL 74 (506)
T ss_pred EEECCCCCHHHHHHHHHHHCCEEEEEECCCCC
T ss_conf 99877872589999998715416887315753
No 221
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=96.74 E-value=0.003 Score=40.81 Aligned_cols=32 Identities=28% Similarity=0.587 Sum_probs=24.6
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 38775389999999999779859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
+|||||+.|+-+|..|++.|.+|+|+|+.+.+
T Consensus 179 ~ViGgG~ig~E~A~~~~~lG~~Vtii~~~~~~ 210 (464)
T PRK05976 179 VVVGGGYIGLEWGSMLRKFGVEVTVVEAADRI 210 (464)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 99899689999999999539869999853655
No 222
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.73 E-value=0.0027 Score=41.08 Aligned_cols=139 Identities=14% Similarity=0.132 Sum_probs=73.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCC-CCCC-----CCEEEECHHHHHHHHHCC-CHHHHHHCCCCCCCEEEEEC
Q ss_conf 3877538999999999977985999956876-5557-----713667888999999889-94789862688430699978
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQ-LSDS-----GFGIQISPNASRILKRIG-ILDQLEDIWIEPEDFVFRSG 73 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~-~~~~-----g~gi~l~p~~~~~L~~lG-i~~~~~~~~~~~~~~~~~~~ 73 (380)
||||||-||+-+|++-+|.|.++.++--+.+ +..- -.|++ -.+-++.++.|| +--... ....+.++-.
T Consensus 8 IVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~-KG~lvrEIDALGG~Mg~~~----D~~~IQ~r~L 82 (621)
T COG0445 8 IVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPG-KGHLVREIDALGGLMGKAA----DKAGIQFRML 82 (621)
T ss_pred EEECCCCCCHHHHHHHHCCCCEEEEEECCCCCEEECCCCCCCCCCC-CCEEEEEEHHCCCHHHHHH----HHCCCCHHHC
T ss_conf 9989984204777766436980799973777446503564457735-5326775241245577766----6507865333
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECC----CC---CCCCCCCCCCCEEEEEEE
Q ss_conf 85443334554323444478247862000134788997320687256421012----34---432112345310356899
Q gi|254780168|r 74 STLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHI----TH---PDCTQISKINNQKPDLLV 146 (380)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v----~~---~~~~~~~~~~~~~adlvI 146 (380)
+..+. ... . .+...++|....+.+++.++..++..+..+... ++ +.++...+|....|+.||
T Consensus 83 N~sKG-------PAV---r-a~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVV 151 (621)
T COG0445 83 NSSKG-------PAV---R-APRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVV 151 (621)
T ss_pred CCCCC-------CHH---C-CHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCCEEEEEEECCCCEEECCEEE
T ss_conf 67776-------210---4-506544289999999999854999552476667871337976899992787851068799
Q ss_pred EECCCCCCC
Q ss_conf 743676631
Q gi|254780168|r 147 GADGLNSNI 155 (380)
Q Consensus 147 gADG~~S~v 155 (380)
-+-|-+-+-
T Consensus 152 lTTGTFL~G 160 (621)
T COG0445 152 LTTGTFLRG 160 (621)
T ss_pred EEECCCCCC
T ss_conf 963344362
No 223
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.72 E-value=0.0021 Score=41.91 Aligned_cols=32 Identities=25% Similarity=0.637 Sum_probs=29.4
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 38775389999999999779859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
+|||||..|+-+|..|++.|.+|+|+|+.+.+
T Consensus 152 vIIGgG~IGlE~A~~l~~~G~~Vtlie~~~~~ 183 (438)
T PRK13512 152 LVVGAGYVSLEVLENLYERGLHPTLIHRSDKI 183 (438)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 99895589999999999729908999935731
No 224
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.71 E-value=0.0035 Score=40.32 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=26.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
+|||||..|+-+|..|++.|-+|+|+|+.+.+-
T Consensus 161 ~ViGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll 193 (438)
T PRK07251 161 GILGGGNIGLEFAGLYNKLGSKVTVLDAASTFL 193 (438)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf 998886458899999983487689998461002
No 225
>TIGR02730 carot_isom carotene isomerase; InterPro: IPR014101 Members of this family, including sll0033 (crtH) of Synechocystis sp. (strain PCC 6803), catalyse a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization..
Probab=96.71 E-value=0.0014 Score=43.16 Aligned_cols=29 Identities=41% Similarity=0.731 Sum_probs=27.9
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 38775389999999999779859999568
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKK 29 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~ 29 (380)
||||.|++||.+|..|+.+|.+|.|+||-
T Consensus 4 iVIGSGIGGLVtAtQLa~KGakvLVLE~Y 32 (506)
T TIGR02730 4 IVIGSGIGGLVTATQLAAKGAKVLVLERY 32 (506)
T ss_pred EEEECCCHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 89816831789999998546225532201
No 226
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.71 E-value=0.0044 Score=39.61 Aligned_cols=32 Identities=38% Similarity=0.605 Sum_probs=23.6
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 38775389999999999779859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
+|||||+.|+-+|..|++.|.+|+|+|+.+.+
T Consensus 178 ~iiGgG~ig~E~A~~~~~lG~~Vtlv~~~~~l 209 (466)
T PRK06115 178 VVIGAGVIGLELGSVWRRLGAQVTVVEYLDRI 209 (466)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 99958589999999998619847899833421
No 227
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.70 E-value=0.0042 Score=39.77 Aligned_cols=33 Identities=18% Similarity=0.396 Sum_probs=30.0
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
+|||||+.|+-+|..|++.|.+|+|+|+.+.+-
T Consensus 173 ~IiGgG~Ig~E~A~~~~~lG~~Vtlie~~~~lL 205 (452)
T TIGR03452 173 VIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL 205 (452)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf 998886899999999996199499999676223
No 228
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.69 E-value=0.0029 Score=40.88 Aligned_cols=55 Identities=22% Similarity=0.390 Sum_probs=41.5
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCC-------CCCEEEECHHHHHHHHHCCCH
Q ss_conf 3877538999999999977985999956876555-------771366788899999988994
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSD-------SGFGIQISPNASRILKRIGIL 55 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~-------~g~gi~l~p~~~~~L~~lGi~ 55 (380)
+|+|+|..|.++|..|.+.|++|+++|++++... ....+.....-.++|+++|+.
T Consensus 4 iIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~ 65 (225)
T COG0569 4 IIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGID 65 (225)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCC
T ss_conf 99898578899999998789908999768899998632000449999268898999867986
No 229
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.66 E-value=0.0023 Score=41.52 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=26.4
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 3877538999999999977985999956876
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
||||+|.|||++|+.++++| +|+|++|...
T Consensus 11 lVIGsG~AGl~AA~~a~~~g-~vvlv~k~~~ 40 (539)
T PRK06263 11 LIIGSGGAGARAAIEASQKG-TVVIVSKGLF 40 (539)
T ss_pred EEECCHHHHHHHHHHHHHCC-CEEEEECCCC
T ss_conf 99995399999999998259-9799977898
No 230
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=96.65 E-value=0.006 Score=38.73 Aligned_cols=34 Identities=29% Similarity=0.548 Sum_probs=30.9
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf 3877538999999999977985999956876555
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSD 34 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~ 34 (380)
+|||||+.|+-+|..+++.|.+|+|+|+.+.+-+
T Consensus 177 vIiGgG~IG~E~a~~~~~LG~~VTive~~~~iLp 210 (454)
T COG1249 177 VIVGGGYIGLEFASVFAALGSKVTVVERGDRILP 210 (454)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 9989888999999999986997899946887788
No 231
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.63 E-value=0.0021 Score=41.87 Aligned_cols=31 Identities=32% Similarity=0.440 Sum_probs=26.8
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 38775389999999999779859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
||||+|+|||++|+.+++ +.+|.|+||....
T Consensus 9 lVIGsG~AGl~AAi~a~~-~~~v~vi~K~~~~ 39 (583)
T PRK08205 9 VIVGAGGAGMRAAIEAGP-RARTAVLTKLYPT 39 (583)
T ss_pred EEECCCHHHHHHHHHHCC-CCCEEEEECCCCC
T ss_conf 999962999999997156-9977999788999
No 232
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.62 E-value=0.0049 Score=39.32 Aligned_cols=30 Identities=23% Similarity=0.513 Sum_probs=14.6
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 877538999999999977985999956876
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
|||||..|+-+|..|++.|.+|+|+|+.+.
T Consensus 177 IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~ 206 (462)
T PRK06416 177 VIGGGYIGIEFASAYASLGAEVTIIEALPR 206 (462)
T ss_pred EECCCHHHHHHHHHHHHHCCEEEEEECCCC
T ss_conf 988978788999999973976899740543
No 233
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.62 E-value=0.004 Score=39.95 Aligned_cols=32 Identities=31% Similarity=0.499 Sum_probs=24.9
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 38775389999999999779859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
+|||||..|+-+|..|++.|.+|+|+|+.+.+
T Consensus 176 ~IiGgG~ig~E~A~~~~~lG~~Vtiv~~~~~~ 207 (467)
T PRK07818 176 VIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRA 207 (467)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 99998799999999998329877776211313
No 234
>PRK08071 L-aspartate oxidase; Provisional
Probab=96.62 E-value=0.0022 Score=41.77 Aligned_cols=32 Identities=31% Similarity=0.566 Sum_probs=27.7
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
||||+|+|||.+|+.+++. .+|+|+||.+..+
T Consensus 7 lVIGsG~AGl~AA~~~~~~-~~V~vv~K~~~~~ 38 (510)
T PRK08071 7 IIIGSGIAALRVAKEICHE-KNVIIITKKTKRN 38 (510)
T ss_pred EEECCCHHHHHHHHHHCCC-CCEEEEECCCCCC
T ss_conf 9999659999999983658-9879997989999
No 235
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.61 E-value=0.0043 Score=39.70 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=29.0
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
+|||||..|+-+|..|++.|.+|+|+|+.+.+-
T Consensus 162 ~IiGgG~ig~E~A~~~~~lG~~Vtiie~~~~il 194 (441)
T PRK08010 162 GILGGGYIGVEFASMFANFGSKVTILEAASLFL 194 (441)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 998985899999999997598788970467326
No 236
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=96.61 E-value=0.0039 Score=40.01 Aligned_cols=30 Identities=33% Similarity=0.546 Sum_probs=14.4
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 877538999999999977985999956876
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
|||||+.|+-+|..|++.|.+|+|+|+.+.
T Consensus 188 ViGgG~ig~E~A~~~~~lG~~Vtli~~~~~ 217 (475)
T PRK06327 188 VIGAGVIGLELGSVWRRLGAEVTILEALPA 217 (475)
T ss_pred EECCCHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 996747589999999954985999985364
No 237
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.60 E-value=0.0024 Score=41.39 Aligned_cols=33 Identities=12% Similarity=0.333 Sum_probs=29.1
Q ss_pred CEECCHHHHHHHHHHHHHC---CCEEEEEECCCCCC
Q ss_conf 3877538999999999977---98599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHR---GIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~---G~~v~i~Er~~~~~ 33 (380)
||||||.||+++|..|+++ +++|+|+|+++...
T Consensus 3 VIvGgG~aG~~~a~~L~~~~~~~~~ItLId~~~~~~ 38 (364)
T TIGR03169 3 VLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP 38 (364)
T ss_pred EEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCE
T ss_conf 999960999999999704178998399999988651
No 238
>PRK07846 mycothione/glutathione reductase; Reviewed
Probab=96.60 E-value=0.005 Score=39.25 Aligned_cols=28 Identities=25% Similarity=0.410 Sum_probs=23.4
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 387753899999999997798599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
||||+||+|.++|..+ +|.+|.|+|+..
T Consensus 5 iVIG~Gpgg~~~a~~~--aG~kValVE~~~ 32 (453)
T PRK07846 5 IIIGTGSGNSILDERF--ADKRIAIVEKGT 32 (453)
T ss_pred EEECCCHHHHHHHHHH--CCCEEEEEECCC
T ss_conf 9989888999999998--299299997899
No 239
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=96.60 E-value=0.0033 Score=40.48 Aligned_cols=33 Identities=30% Similarity=0.647 Sum_probs=30.1
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
||||||++||.+|..|+..|.+|.|+|...+-+
T Consensus 9 ivvgaglaglvaa~elA~aG~~V~ildQEgeqn 41 (552)
T COG3573 9 IVVGAGLAGLVAAAELADAGKRVLILDQEGEQN 41 (552)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 998752798899998872676599970555456
No 240
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase; InterPro: IPR014103 Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyses multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulphur bacterium Chlorobium tepidum..
Probab=96.56 E-value=0.003 Score=40.79 Aligned_cols=59 Identities=32% Similarity=0.514 Sum_probs=43.2
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCCCC-C-------CCEEEE--------CHHHHHHHHHCCCHHHHHH
Q ss_conf 877538999999999977985999956876555-7-------713667--------8889999998899478986
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSD-S-------GFGIQI--------SPNASRILKRIGILDQLED 60 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~-~-------g~gi~l--------~p~~~~~L~~lGi~~~~~~ 60 (380)
|||+|++|+++|..|..+|++|.|||.++...- + |.-|-+ -.+-.+.|++.|..+.+..
T Consensus 4 ivG~GlaGl~~av~l~d~G~~v~~ye~r~f~GGkvGs~~d~~Gnh~emGlhvff~~y~~lf~l~~kvGa~~~l~~ 78 (474)
T TIGR02732 4 IVGAGLAGLATAVELVDAGHEVEIYESRSFIGGKVGSWVDKDGNHIEMGLHVFFGCYANLFKLLKKVGALDNLLL 78 (474)
T ss_pred EEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_conf 872567789999999738972788524332375200015178887630588889989999999985141555443
No 241
>KOG1800 consensus
Probab=96.54 E-value=0.0029 Score=40.87 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=27.7
Q ss_pred EECCHHHHHHHHHHHHH--CCCEEEEEECCCCCC
Q ss_conf 87753899999999997--798599995687655
Q gi|254780168|r 2 IIGAGISGLTLAASLGH--RGIQSCVLEKKDQLS 33 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~--~G~~v~i~Er~~~~~ 33 (380)
|||+||||..+|..|-+ .+++|+|+||.|.|-
T Consensus 25 IVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF 58 (468)
T KOG1800 25 IVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF 58 (468)
T ss_pred EECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 9888836889999997258997067541577665
No 242
>KOG2844 consensus
Probab=96.54 E-value=0.014 Score=36.10 Aligned_cols=164 Identities=16% Similarity=0.193 Sum_probs=75.8
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC----CCEEE--ECH--HHHHHHH--HCCCHHHHHHC-CCC-----
Q ss_conf 38775389999999999779859999568765557----71366--788--8999999--88994789862-688-----
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDS----GFGIQ--ISP--NASRILK--RIGILDQLEDI-WIE----- 64 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~----g~gi~--l~p--~~~~~L~--~lGi~~~~~~~-~~~----- 64 (380)
+|||||.+|+.+|..|++.|.+..|++.+...... .+|+. +-| -.++.+- ..-++.+++++ +.+
T Consensus 43 vViggG~~g~~~~yhlak~g~k~avlle~~~ltsgttwhtagl~~~lr~~dv~~qlia~~~~~l~~~leeEtgl~tGwiq 122 (856)
T KOG2844 43 VVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTWHTAGLLWQLFPSDVELQLIAHTSRVLYRELEEETGLHTGWIQ 122 (856)
T ss_pred EEECCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEC
T ss_conf 99857850478999999714652478764110366563330103203689603999887889999999986199763242
Q ss_pred CCCEEEEECC------------------------CCCCCCCCCCCC---CCCCCCCCEEEEEECCHHHHHHHHHHHHCCC
Q ss_conf 4306999788------------------------544333455432---3444478247862000134788997320687
Q gi|254780168|r 65 PEDFVFRSGS------------------------TLKELSRFSCKN---YSRNNWGGIYGVVKRHTLQKILLNHIQTQPL 117 (380)
Q Consensus 65 ~~~~~~~~~~------------------------~~~~~~~~~~~~---~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~ 117 (380)
.-.+.+-+.. --+....+++-+ .....+.+.-.+++-..+.+.|...++..+.
T Consensus 123 ~G~~~lAs~~~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~Ly~P~DG~~DP~~lC~ala~~A~~~GA 202 (856)
T KOG2844 123 NGGIFLASNRQRLDEYKRLMSRGKAHGVESELLSPEETQELFPLLNVDDVYGGLYSPGDGVMDPAGLCQALARAASALGA 202 (856)
T ss_pred CCCEEEECCHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHCCCCCHHHHEEEEECCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 78168704777899999999764331531055389999886756566674012035887644889999999999985384
Q ss_pred EEEEEEECCCC-----CCCCCCCC-CCCEEEEEEEEECCCCCC-CHHHCCCCCCC
Q ss_conf 25642101234-----43211234-531035689974367663-12112853344
Q gi|254780168|r 118 ARLHLSTHITH-----PDCTQISK-INNQKPDLLVGADGLNSN-IRHYIDTQPIT 165 (380)
Q Consensus 118 ~~~~~~~~v~~-----~~~~~~~~-~~~~~adlvIgADG~~S~-vR~~l~~~~~~ 165 (380)
.+..+.-|++ .+...+++ --.+++..+|-|-|.+-. |-+..+.+.|-
T Consensus 203 -~viE~cpV~~i~~~~~~~~gVeT~~G~iet~~~VNaaGvWAr~Vg~m~gvkvPL 256 (856)
T KOG2844 203 -LVIENCPVTGLHVETDKFGGVETPHGSIETECVVNAAGVWAREVGAMAGVKVPL 256 (856)
T ss_pred -EEEECCCCCEEEEECCCCCCEECCCCCEECCEEEECHHHHHHHHHHHCCCCCCC
T ss_conf -798148742577503775543046764443527852227798765630785463
No 243
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=96.53 E-value=0.0044 Score=39.63 Aligned_cols=33 Identities=27% Similarity=0.496 Sum_probs=28.2
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
+|||||..|+-+|..|++.|.+|+|+|+.+.+-
T Consensus 174 ~IiGgG~ig~E~A~~~~~~G~~Vtiv~~~~~il 206 (458)
T PRK06912 174 LIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL 206 (458)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf 998997479999999996598799998446678
No 244
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.51 E-value=0.0026 Score=41.21 Aligned_cols=107 Identities=18% Similarity=0.310 Sum_probs=62.7
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCC-----CCCEEEECHHHH---HHHHHCCCHH-HHHHCCCCCCCEEEE
Q ss_conf 3877538999999999977985999956876555-----771366788899---9999889947-898626884306999
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSD-----SGFGIQISPNAS---RILKRIGILD-QLEDIWIEPEDFVFR 71 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~-----~g~gi~l~p~~~---~~L~~lGi~~-~~~~~~~~~~~~~~~ 71 (380)
.|||||+||+-+|..+++.|++|.++|-++.-.+ ...+...-.|++ ..-+..|++. +++..+..+ +.
T Consensus 7 ~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~TpaH~td~fAELVCSNSlr~~~~~navGlLk~EMR~lgSli----i~ 82 (439)
T COG1206 7 NVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNAVGLLKAEMRLLGSLI----IE 82 (439)
T ss_pred EEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHH----HH
T ss_conf 89756544519999998769837999704566897544565243021255464034444578899999721178----66
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 78854433345543234444782478620001347889973206872564210
Q gi|254780168|r 72 SGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLST 124 (380)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~ 124 (380)
..+. .+.|. | ..+.++|..+-+.+.+.++.++.+++....
T Consensus 83 ~Ad~----~~VPA--------G-gALAVDR~~Fs~~vT~~l~~hpli~vireE 122 (439)
T COG1206 83 AADK----HRVPA--------G-GALAVDRDGFSQAVTEKLENHPLIEVIREE 122 (439)
T ss_pred HHHH----CCCCC--------C-CEEEECHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 4154----06888--------7-604661767789999998539977987110
No 245
>PRK06370 mercuric reductase; Validated
Probab=96.49 E-value=0.0064 Score=38.52 Aligned_cols=32 Identities=31% Similarity=0.542 Sum_probs=24.9
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 38775389999999999779859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
+|||||..|+-+|..|++.|.+|+|+|+.+.+
T Consensus 174 ~ViGgG~ig~E~A~~~~~~G~~Vtlv~~~~~l 205 (459)
T PRK06370 174 AVIGGGYIGLEFAQAFRRFGSEVTVVERGPRL 205 (459)
T ss_pred EEECCCHHHHHHHHHHHHHCCEEEEEEECCCC
T ss_conf 99898477999999999639889999965734
No 246
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.48 E-value=0.004 Score=39.91 Aligned_cols=40 Identities=35% Similarity=0.488 Sum_probs=30.8
Q ss_pred CEECCHHHHHHHHHHHHHC--C-CEEEEEECCCCCCCCCCEEEECH
Q ss_conf 3877538999999999977--9-85999956876555771366788
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHR--G-IQSCVLEKKDQLSDSGFGIQISP 43 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~--G-~~v~i~Er~~~~~~~g~gi~l~p 43 (380)
.|||+|++|+.+|..|.++ . -.+.|||+++.+ |.|+..++
T Consensus 5 AIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~---G~GiaYs~ 47 (474)
T COG4529 5 AIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF---GQGIAYST 47 (474)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCCCEEEECCCCCC---CCCCCCCC
T ss_conf 99788657999999998478877756785355545---78755788
No 247
>TIGR00551 nadB L-aspartate oxidase; InterPro: IPR005288 L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbour-joining trees.; GO: 0008734 L-aspartate oxidase activity, 0009435 NAD biosynthetic process, 0005737 cytoplasm.
Probab=96.48 E-value=0.0023 Score=41.52 Aligned_cols=149 Identities=17% Similarity=0.254 Sum_probs=77.6
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-----CCEEE--ECH-H-HHH--HHHHC----CCH----------
Q ss_conf 38775389999999999779859999568765557-----71366--788-8-999--99988----994----------
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDS-----GFGIQ--ISP-N-ASR--ILKRI----GIL---------- 55 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~-----g~gi~--l~p-~-~~~--~L~~l----Gi~---------- 55 (380)
+|||.|.|||++|+.|..++.+|+|+=|.....+. -.||+ +.+ . |++ +.|.| |+-
T Consensus 6 ~viGsGaAGL~aAlal~~~~~~V~v~~K~a~~~~~~s~yAQGGIAa~~~~~DdSi~~Hv~DTL~AGaG~cD~~aV~~v~~ 85 (546)
T TIGR00551 6 VVIGSGAAGLSAALALAEKYRDVVVISKAAEVKESASYYAQGGIAAALAETDDSIDAHVEDTLAAGAGLCDEEAVEFVVS 85 (546)
T ss_pred EEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCEECCCEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 99752089999998533268637897587555567520001126630387558568778999984467886889999985
Q ss_pred ------HHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEC-------CHHHHHHHHHHHHCCCEEEEE
Q ss_conf ------7898626884306999788544333455432344447824786200-------013478899732068725642
Q gi|254780168|r 56 ------DQLEDIWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKR-------HTLQKILLNHIQTQPLARLHL 122 (380)
Q Consensus 56 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r-------~~l~~~L~~~~~~~~~~~~~~ 122 (380)
+.+...|+..+.-.- + +++. +..+ ..+.++.+..|-. ..+...|.+++..++.+++..
T Consensus 86 ~~~~av~~L~~~Gv~FD~~~~--g-nGee--~~~L----trEGgHS~~RI~HA~GDaTGr~~~~~L~~~a~~~p~~~~~~ 156 (546)
T TIGR00551 86 DAKEAVQELVEAGVSFDRNEQ--G-NGEE--RLAL----TREGGHSYRRILHAAGDATGREVISTLLKKARSEPNVEIIE 156 (546)
T ss_pred HHHHHHHHHHHCCCEECCCCC--C-CCCC--CCCC----CCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEECC
T ss_conf 368999999866922026779--8-8744--3100----13356677742773576324899999999974377624101
Q ss_pred EECCCC---C-----------CCCCCCCC-----CCEEEEEEEEECCCCCCCHHH
Q ss_conf 101234---4-----------32112345-----310356899743676631211
Q gi|254780168|r 123 STHITH---P-----------DCTQISKI-----NNQKPDLLVGADGLNSNIRHY 158 (380)
Q Consensus 123 ~~~v~~---~-----------~~~~~~~~-----~~~~adlvIgADG~~S~vR~~ 158 (380)
+..+.+ . .++.+.+- +..++|-||-|-|-.|.+=++
T Consensus 157 ~~~A~~l~i~dkiGlP~~g~~~G~~v~~~nK~~~e~~~a~aVvLAtGG~g~ly~~ 211 (546)
T TIGR00551 157 GEVALDLLIEDKIGLPTTGRVVGVLVVDSNKETVETLHADAVVLATGGLGKLYSF 211 (546)
T ss_pred CCEEEEEEECCCCCCCCCCEEEEEEEECCCCCEEEEEECCEEEEECCCCCHHHHH
T ss_conf 2144444422502479888799999971678723776301000320773210031
No 248
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.42 E-value=0.0041 Score=39.86 Aligned_cols=31 Identities=32% Similarity=0.342 Sum_probs=27.6
Q ss_pred EECCHHHHHHHHHHHHH-CCCEEEEEECCCCC
Q ss_conf 87753899999999997-79859999568765
Q gi|254780168|r 2 IIGAGISGLTLAASLGH-RGIQSCVLEKKDQL 32 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~-~G~~v~i~Er~~~~ 32 (380)
|||+||||..+|..|-+ .+.+|.||||-|.|
T Consensus 44 IVGSGPAGfYaA~~Llk~~~v~VD~fErLP~P 75 (506)
T PTZ00188 44 IIGAGPSALYCCKHLLKHERVKVDIFEKLPNP 75 (506)
T ss_pred EECCCCHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 98888389999999963899779888268988
No 249
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.38 E-value=0.011 Score=37.04 Aligned_cols=30 Identities=37% Similarity=0.748 Sum_probs=14.6
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 877538999999999977985999956876
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
|||||..|+-+|..|++.|.+|+|+|+.+.
T Consensus 174 VIGgG~ig~E~A~~l~~~G~~Vtvv~~~~~ 203 (460)
T PRK06292 174 VIGGGVIGLELGQALSRLGVKVTVFERGDR 203 (460)
T ss_pred EECCCHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 999867887999999846986999962475
No 250
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.38 E-value=0.01 Score=37.14 Aligned_cols=33 Identities=30% Similarity=0.491 Sum_probs=27.5
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
+|||||+.|+-+|..|++.|.+|+|+|+.+.+-
T Consensus 178 ~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll 210 (472)
T PRK06467 178 LVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI 210 (472)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf 999564728999999985298689996045545
No 251
>PRK06116 glutathione reductase; Validated
Probab=96.37 E-value=0.0075 Score=38.07 Aligned_cols=17 Identities=18% Similarity=0.077 Sum_probs=8.6
Q ss_pred CCCEEEEEEEEECCCCC
Q ss_conf 53103568997436766
Q gi|254780168|r 137 INNQKPDLLVGADGLNS 153 (380)
Q Consensus 137 ~~~~~adlvIgADG~~S 153 (380)
+++++++.+|-|-|...
T Consensus 127 ~~~i~a~~ivIATGs~p 143 (450)
T PRK06116 127 GETYTADHILIATGGRP 143 (450)
T ss_pred CEEEEEEEEEECCCCCC
T ss_conf 82985417999878977
No 252
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR011280 This entry represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes..
Probab=96.37 E-value=0.0041 Score=39.88 Aligned_cols=33 Identities=24% Similarity=0.458 Sum_probs=29.1
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
||||+|+||+++|+.|+++|++|..|==.+.++
T Consensus 2 iVVGtGLaG~~A~~~lae~G~~V~~F~~~d~pr 34 (620)
T TIGR01811 2 IVVGTGLAGGSAAAKLAELGYHVKLFSYQDAPR 34 (620)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 685565347899999986488512544058876
No 253
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.35 E-value=0.0044 Score=39.65 Aligned_cols=32 Identities=31% Similarity=0.475 Sum_probs=29.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 38775389999999999779859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
||||||-+|+.+|+..++.+.+|+|+||..--
T Consensus 17 LIIGGGtAG~~AAi~Ake~~~~VlvleKA~ik 48 (894)
T PRK13800 17 LVIGGGTAGTMAALTAAEHGAQVLLLEKAHVR 48 (894)
T ss_pred EEECCCCHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 99889726889999976069958998545666
No 254
>PRK13748 putative mercuric reductase; Provisional
Probab=96.28 E-value=0.0099 Score=37.22 Aligned_cols=31 Identities=10% Similarity=0.015 Sum_probs=17.1
Q ss_pred CCCCCCCCCC--CCC--CCEEEEEEEEECCCCCCC
Q ss_conf 1234432112--345--310356899743676631
Q gi|254780168|r 125 HITHPDCTQI--SKI--NNQKPDLLVGADGLNSNI 155 (380)
Q Consensus 125 ~v~~~~~~~~--~~~--~~~~adlvIgADG~~S~v 155 (380)
+..+...+.+ .++ .++++|.+|-|-|.+..+
T Consensus 212 ~f~~~~tv~V~~~dg~~~~i~a~~iIIATGS~P~~ 246 (561)
T PRK13748 212 RFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAV 246 (561)
T ss_pred EEECCCEEEEEECCCCEEEEEECEEEECCCCCCCC
T ss_conf 99539889999358964899418699947887667
No 255
>PRK07846 mycothione/glutathione reductase; Reviewed
Probab=96.23 E-value=0.0057 Score=38.87 Aligned_cols=33 Identities=24% Similarity=0.501 Sum_probs=29.1
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
+|||||..|+-+|..|++.|.+|+|+|+.+.+-
T Consensus 172 ~IIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll 204 (453)
T PRK07846 172 VIVGGGFIAAEFAHVFSALGVRVTVVNRSDRLL 204 (453)
T ss_pred EEECCCHHHHHHHHHHHHHCCEEEEEEECCCCC
T ss_conf 998997579999999995299268997465324
No 256
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=96.21 E-value=0.0035 Score=40.29 Aligned_cols=142 Identities=20% Similarity=0.245 Sum_probs=72.9
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC----CCEEE--ECH-H--HHHHHHHC----CCH------------
Q ss_conf 38775389999999999779859999568765557----71366--788-8--99999988----994------------
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDS----GFGIQ--ISP-N--ASRILKRI----GIL------------ 55 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~----g~gi~--l~p-~--~~~~L~~l----Gi~------------ 55 (380)
+|||+|+|||++|+.|++. ++|+|+-|.+-.... -.||+ +.+ . ...+-+.| |+-
T Consensus 11 ~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~~~ 89 (518)
T COG0029 11 LIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVSEA 89 (518)
T ss_pred EEECCCHHHHHHHHHCCCC-CCEEEEECCCCCCCCCHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 9988759999999737777-847999577788762365437557661799987888888998547778699999999868
Q ss_pred ----HHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEE-E-----CCHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf ----78986268843069997885443334554323444478247862-0-----0013478899732068725642101
Q gi|254780168|r 56 ----DQLEDIWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVV-K-----RHTLQKILLNHIQTQPLARLHLSTH 125 (380)
Q Consensus 56 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~-----r~~l~~~L~~~~~~~~~~~~~~~~~ 125 (380)
+.+...|++.+.- ..+. + .+.. ..+.....| + =..+...|.++++..+++++..+..
T Consensus 90 ~~ai~~Li~~Gv~FDr~-----~~g~-~-~lt~------EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~ 156 (518)
T COG0029 90 PEAIEWLIDLGVPFDRD-----EDGR-L-HLTR------EGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAE 156 (518)
T ss_pred HHHHHHHHHCCCCCCCC-----CCCC-E-EEEE------ECCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCH
T ss_conf 99999999739877678-----8874-5-4431------01357755788568760899999999984489958986622
Q ss_pred CCC----CC----CCCCCC----CCCEEEEEEEEECCCCCCCH
Q ss_conf 234----43----211234----53103568997436766312
Q gi|254780168|r 126 ITH----PD----CTQISK----INNQKPDLLVGADGLNSNIR 156 (380)
Q Consensus 126 v~~----~~----~~~~~~----~~~~~adlvIgADG~~S~vR 156 (380)
+.+ .. ++.+.+ ..+..++.||-|-|--+.+=
T Consensus 157 a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly 199 (518)
T COG0029 157 ALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLY 199 (518)
T ss_pred HHHHHHCCCCEEEEEEEECCCCEEEEEECCEEEEECCCCCCCC
T ss_conf 3666024783476799964898179972684899248876312
No 257
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.10 E-value=0.0063 Score=38.57 Aligned_cols=54 Identities=22% Similarity=0.267 Sum_probs=38.0
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCC----C--CCEEEECHHHHHHHHHCCC
Q ss_conf 3877538999999999977985999956876555----7--7136678889999998899
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSD----S--GFGIQISPNASRILKRIGI 54 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~----~--g~gi~l~p~~~~~L~~lGi 54 (380)
||+|||=.|..+|..|.+.|++|+|+|+++..-+ . -..+.=.....+.|++.|+
T Consensus 4 iI~GaG~vG~~La~~Ls~e~~dV~vID~d~~~~~~~~~~lDv~~i~Gd~~~~~~L~~Agi 63 (455)
T PRK09496 4 IILGAGQVGGTLAERLVGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSHPDVLREAGA 63 (455)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCEEEEEECCCCHHHHHHCCC
T ss_conf 999988899999999986899799998999999998862586899966899999996599
No 258
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=96.10 E-value=0.0076 Score=38.00 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=11.2
Q ss_pred CCCCCCEEEEEEEEECCCCCCC
Q ss_conf 2345310356899743676631
Q gi|254780168|r 134 ISKINNQKPDLLVGADGLNSNI 155 (380)
Q Consensus 134 ~~~~~~~~adlvIgADG~~S~v 155 (380)
+.++++.++|.|+-|-|..-.+
T Consensus 254 ~~~g~~i~~D~Vl~a~Gr~pn~ 275 (465)
T PRK05249 254 LKSGKKIKADCLLYANGRTGNT 275 (465)
T ss_pred ECCCCEEEEEEEEECCCCCCCC
T ss_conf 4799599870899887666676
No 259
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.04 E-value=0.016 Score=35.88 Aligned_cols=15 Identities=13% Similarity=0.177 Sum_probs=8.2
Q ss_pred CEEEEEEEEECCCCC
Q ss_conf 103568997436766
Q gi|254780168|r 139 NQKPDLLVGADGLNS 153 (380)
Q Consensus 139 ~~~adlvIgADG~~S 153 (380)
+++++.+|-|-|.+.
T Consensus 182 ~i~a~~iIIATGS~P 196 (541)
T PTZ00052 182 TITSKYILIATGCRP 196 (541)
T ss_pred EEEEEEEEECCCCCC
T ss_conf 999527998578887
No 260
>pfam02737 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain. This family also includes lambda crystallin.
Probab=96.03 E-value=0.0081 Score=37.81 Aligned_cols=31 Identities=23% Similarity=0.529 Sum_probs=28.7
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 8775389999999999779859999568765
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
|||||.-|...|..++++|++|+++|.+++-
T Consensus 4 ViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~ 34 (180)
T pfam02737 4 VIGAGTMGAGIAQVFARAGLEVVLVDISEEA 34 (180)
T ss_pred EECCCHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 9997889999999999679939999799899
No 261
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.87 E-value=0.027 Score=34.21 Aligned_cols=31 Identities=29% Similarity=0.511 Sum_probs=27.9
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 3877538999999999977985999956876
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
+|+|.|.+|+++|..|.++|.+|+++|-.+.
T Consensus 18 ~V~GlG~sG~s~a~~L~~~G~~v~~~D~~~~ 48 (481)
T PRK01438 18 VVAGLGVSGFPAADALHELGASVTVVADGDD 48 (481)
T ss_pred EEEEECHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 9995758899999999967998999979987
No 262
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.81 E-value=0.022 Score=34.83 Aligned_cols=24 Identities=21% Similarity=0.273 Sum_probs=13.4
Q ss_pred CCCCCCCCCCEEEEEEEEECCCCC
Q ss_conf 321123453103568997436766
Q gi|254780168|r 130 DCTQISKINNQKPDLLVGADGLNS 153 (380)
Q Consensus 130 ~~~~~~~~~~~~adlvIgADG~~S 153 (380)
+.+.+.|++.+.+|+||=|+|++-
T Consensus 220 ~~vr~~DG~~i~ad~VV~a~GIrP 243 (793)
T COG1251 220 EGVRFADGTEIPADLVVMAVGIRP 243 (793)
T ss_pred EEEEECCCCCCCCEEEEEECCCCC
T ss_conf 367605687344206999623046
No 263
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=95.80 E-value=0.012 Score=36.72 Aligned_cols=31 Identities=26% Similarity=0.346 Sum_probs=29.0
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 8775389999999999779859999568765
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
|||||..|..-|..++.+|++|+++|.+++.
T Consensus 7 VIGAGvMGsGwAa~FA~aG~~V~L~Dp~peA 37 (489)
T PRK07531 7 CIGGGVIGGGWAARFLLNGWDVAVFDPHPEA 37 (489)
T ss_pred EECCCHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 9871886899999999579969999488789
No 264
>PTZ00318 NADH dehydrogenase; Provisional
Probab=95.79 E-value=0.0091 Score=37.46 Aligned_cols=33 Identities=21% Similarity=0.419 Sum_probs=30.2
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
||+|||-+|+.+|..|.++..+|+|+++++..-
T Consensus 14 VIlGgGfaGl~~ak~L~~~~~~VtLVdp~ny~l 46 (514)
T PTZ00318 14 VVVGTGWAGCYFARHLNPKLANLHVLSTRNHMV 46 (514)
T ss_pred EEECCCHHHHHHHHHHCCCCCCEEEECCCCCCC
T ss_conf 999976999999997386898289999999850
No 265
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase; InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase . ; GO: 0008924 malate dehydrogenase (acceptor) activity, 0006099 tricarboxylic acid cycle.
Probab=95.78 E-value=0.087 Score=30.74 Aligned_cols=151 Identities=21% Similarity=0.276 Sum_probs=81.0
Q ss_pred CEECCHHHHHHHHHHHHHC--CCEEEEEECCCCCCC--------CCCEE------EECH----HHHHHHHHCC-------
Q ss_conf 3877538999999999977--985999956876555--------77136------6788----8999999889-------
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHR--GIQSCVLEKKDQLSD--------SGFGI------QISP----NASRILKRIG------- 53 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~--G~~v~i~Er~~~~~~--------~g~gi------~l~p----~~~~~L~~lG------- 53 (380)
|-||||+=.+||+..|++. .++.+||||-+...- .|.|- ..+| ..+++=+.+|
T Consensus 4 vLvGAGIMSATLGvLLk~LeP~w~~~l~Erld~~A~ESS~pWNNAGTGHSALCELNYtP~~~dG~idi~kAv~ine~F~V 83 (487)
T TIGR01320 4 VLVGAGIMSATLGVLLKELEPSWEITLIERLDAVALESSNPWNNAGTGHSALCELNYTPEVADGSIDIAKAVGINEQFQV 83 (487)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCEE
T ss_conf 88656166899999997309995389998607745466766001120136876422478876782653556220114113
Q ss_pred ------------CHHHHHHCCCCCCCEEEEECCCCCCCC---------------------------CCCCCCCCCCCCCC
Q ss_conf ------------947898626884306999788544333---------------------------45543234444782
Q gi|254780168|r 54 ------------ILDQLEDIWIEPEDFVFRSGSTLKELS---------------------------RFSCKNYSRNNWGG 94 (380)
Q Consensus 54 ------------i~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~ 94 (380)
++.+.+..-.+.-++.|..+..+-... .+|+.-..++...+
T Consensus 84 srQFWa~lv~~G~L~dp~~FiNpVPH~Sfv~G~~~v~YLk~Ry~AL~~~~lF~~m~y~~d~~~~a~~lPLM~~gR~~~~p 163 (487)
T TIGR01320 84 SRQFWAHLVEEGVLEDPKSFINPVPHVSFVRGSDGVAYLKKRYEALKKHPLFEGMEYSEDKATFAEWLPLMAKGRDFSEP 163 (487)
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHCCCCCCCCCCCCH
T ss_conf 18889899836724685402278885202657066799999999861784313750005868998742545687688634
Q ss_pred E-------EEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC----CC---CCC------CCCCCEEEEEE-EEECCC
Q ss_conf 4-------7862000134788997320687256421012344----32---112------34531035689-974367
Q gi|254780168|r 95 I-------YGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP----DC---TQI------SKINNQKPDLL-VGADGL 151 (380)
Q Consensus 95 ~-------~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~----~~---~~~------~~~~~~~adlv-IgADG~ 151 (380)
. .--|.-..|-+-|++.|...++.+++++++|++. |+ +++ .+..++++++| |||=|-
T Consensus 164 vA~~~~~~GTDvdFGalt~Ql~~~~~~~PG~~~~yg~~V~~l~r~sD~~W~vt~~d~r~PG~~~~l~a~FvFlGAGG~ 241 (487)
T TIGR01320 164 VAANWVAEGTDVDFGALTKQLLKYLEQEPGTKIRYGHEVKDLKRESDGAWVVTVKDTRTPGGKRTLKARFVFLGAGGG 241 (487)
T ss_pred HHHHHHCCCCEECHHHHHHHHHHHHHCCCCCEEECCCCEEHHHHCCCCCCEEEECCCCCCCCCEEEEEEEEEEECCCC
T ss_conf 332120478400277899999999702898167638500011010588537884122088876267667789715741
No 266
>TIGR01373 soxB sarcosine oxidase, beta subunit family; InterPro: IPR006278 These sequences represent the beta subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. The model is designated as subfamily rather than equivalog for this reason. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) forms that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=95.73 E-value=0.01 Score=37.11 Aligned_cols=166 Identities=18% Similarity=0.137 Sum_probs=80.4
Q ss_pred CEECCHHHHHHHHHHHHH-CCC-EEEEEECCC----CC---CCCCCEEEECHH-------HHHHHHHCCCHHHH------
Q ss_conf 387753899999999997-798-599995687----65---557713667888-------99999988994789------
Q gi|254780168|r 1 MIIGAGISGLTLAASLGH-RGI-QSCVLEKKD----QL---SDSGFGIQISPN-------ASRILKRIGILDQL------ 58 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~-~G~-~v~i~Er~~----~~---~~~g~gi~l~p~-------~~~~L~~lGi~~~~------ 58 (380)
||||||==||++|.+||+ +|+ +|.|+||.- .. .++-+.=-|.|. ++++-+ ||-+++
T Consensus 34 iIvGgGGHGLATAYYLA~~hGItnVAVlEKgwlGgGN~gRNTTivRSNYl~p~s~~~Ye~a~kLwe--GLs~dLNYNvM~ 111 (407)
T TIGR01373 34 IIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIVRSNYLYPESAELYEHAMKLWE--GLSQDLNYNVMF 111 (407)
T ss_pred EEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH--CHHHHCCHHHHH
T ss_conf 888688606899999886469406899850621688664342146541026452237888988861--200120200112
Q ss_pred HHC-----CCCCCCEEE---------EECCCCCCCC------CCCCCCCCCCCCCCEE-EE------EECCHHHHHHHHH
Q ss_conf 862-----688430699---------9788544333------4554323444478247-86------2000134788997
Q gi|254780168|r 59 EDI-----WIEPEDFVF---------RSGSTLKELS------RFSCKNYSRNNWGGIY-GV------VKRHTLQKILLNH 111 (380)
Q Consensus 59 ~~~-----~~~~~~~~~---------~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~------i~r~~l~~~L~~~ 111 (380)
..+ ++...++.. ..|-+.+-+. -.|.-+.+.+.-.+.. .. .-|+|--.+=..+
T Consensus 112 SqRG~~nL~H~~~~~~~~~R~v~A~r~~GvDaELl~~~~v~~~~P~ld~s~daRfPv~Gg~~QrRgGtaRHDAVAWGYAR 191 (407)
T TIGR01373 112 SQRGVLNLAHSTADMDDYARRVNAMRLNGVDAELLSPEQVKRLIPILDFSKDARFPVVGGLLQRRGGTARHDAVAWGYAR 191 (407)
T ss_pred HHHHHHHHCCCHHHHHHHCCCEEEEEECCCCHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCEEEHHHHHHHHH
T ss_conf 13323432188878764314100111036463206878999618811288888863005400137871021012221464
Q ss_pred HHHCCCEEEEEEECCCCCC---CCCCCCCCC----EE-EEEEEEECCCCCCCHHHCCCCCCCCCC
Q ss_conf 3206872564210123443---211234531----03-568997436766312112853344311
Q gi|254780168|r 112 IQTQPLARLHLSTHITHPD---CTQISKINN----QK-PDLLVGADGLNSNIRHYIDTQPITFSG 168 (380)
Q Consensus 112 ~~~~~~~~~~~~~~v~~~~---~~~~~~~~~----~~-adlvIgADG~~S~vR~~l~~~~~~~~~ 168 (380)
..+.-++.+-.+++|++.. ...+.-.+| +. .++=|++=|-.|.+-+..+..-|--++
T Consensus 192 gAd~~GVdiIqncEvTg~~~~~~grv~GV~T~RG~IgA~kvgva~AG~ss~~a~~AG~rlPieSh 256 (407)
T TIGR01373 192 GADARGVDIIQNCEVTGFIRRENGRVIGVETTRGFIGAKKVGVAVAGNSSVVAELAGFRLPIESH 256 (407)
T ss_pred HHHHCCCEEEECCCCCCEEEECCCEEEEEECCCCCCCCEEEEEEEECCHHHHHHHCCCCCCHHHH
T ss_conf 23005840322232023165068758865448741010378888717758989763742662110
No 267
>TIGR01438 TGR thioredoxin and glutathione reductase; InterPro: IPR006338 This homodimeric, FAD-containing member of the pyridine nucleotide disulphide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-terminal arm of the protein is proposed to allow broad substrate specificity , .; GO: 0016654 oxidoreductase activity acting on NADH or NADPH disulfide as acceptor, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport.
Probab=95.71 E-value=0.012 Score=36.78 Aligned_cols=29 Identities=28% Similarity=0.480 Sum_probs=27.5
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 38775389999999999779859999568
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKK 29 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~ 29 (380)
||||||++||++|-.-|+.|-+|.|||--
T Consensus 6 ivIGgGsGGla~aKeAA~~ga~V~l~D~V 34 (513)
T TIGR01438 6 IVIGGGSGGLAAAKEAAKYGAKVLLLDYV 34 (513)
T ss_pred EEECCCCCHHHHHHHHHHCCCCEEEEEEE
T ss_conf 99858973468999998609918999633
No 268
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.70 E-value=0.012 Score=36.53 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=29.3
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 87753899999999997798599995687655
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
|||+|.-|...|..++++|++|+++|.+++..
T Consensus 7 ViGaG~mG~giA~~~a~~G~~V~l~D~~~~~l 38 (308)
T PRK06129 7 IVGAGLIGRAWAIVFARAGHRVRLWDADPAAL 38 (308)
T ss_pred EECCCHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 97778999999999985899389998988999
No 269
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.60 E-value=0.015 Score=36.08 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=28.7
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 8775389999999999779859999568765
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
|||||.-|...|..++++|++|+++|++++.
T Consensus 8 ViGaG~mG~~IA~~~a~~G~~V~l~D~~~~~ 38 (282)
T PRK05808 8 VIGAGTMGNGIAQVCAVAGYDVVMVDISDEA 38 (282)
T ss_pred EECCCHHHHHHHHHHHHCCCCEEEEECCHHH
T ss_conf 9897889999999999579938999799899
No 270
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.51 E-value=0.045 Score=32.70 Aligned_cols=31 Identities=35% Similarity=0.522 Sum_probs=28.5
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 3877538999999999977985999956876
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
+|+|.|.+|+++|..|.++|.+|++.|.++.
T Consensus 4 ~V~GlG~sG~s~a~~L~~~G~~v~~~D~~~~ 34 (459)
T PRK02705 4 HVIGLGRSGIAAARLLKAQGWEVVVSERNDS 34 (459)
T ss_pred EEEEECHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 9995489999999999978995999989899
No 271
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.48 E-value=0.017 Score=35.64 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=28.8
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 8775389999999999779859999568765
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
|||||.-|...|..++++|++|+++|.+++.
T Consensus 9 ViGAG~MG~giA~~~a~~G~~V~l~D~~~e~ 39 (292)
T PRK07530 9 VIGAGQMGNGIAHVCALAGYDVLLNDVSADR 39 (292)
T ss_pred EECCCHHHHHHHHHHHHCCCCEEEEECCHHH
T ss_conf 9896699999999999679968999798899
No 272
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.45 E-value=0.018 Score=35.50 Aligned_cols=31 Identities=19% Similarity=0.456 Sum_probs=28.7
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 8775389999999999779859999568765
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
|||||.-|...|..++++|++|+++|.+++.
T Consensus 8 ViGaG~MG~gIA~~~a~~G~~V~l~D~~~~~ 38 (288)
T PRK08293 8 VAGAGVLGSQIAFQTAFKGFDVTIYDISEEA 38 (288)
T ss_pred EECCCHHHHHHHHHHHHCCCCEEEEECCHHH
T ss_conf 9897889999999999579928999898899
No 273
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.45 E-value=0.017 Score=35.60 Aligned_cols=30 Identities=17% Similarity=0.542 Sum_probs=28.3
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 877538999999999977985999956876
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
|||||.-|...|..++++|++|+++|.+++
T Consensus 8 ViGaG~MG~gIA~~~a~~G~~V~l~D~~~~ 37 (291)
T PRK06035 8 VVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred EECCCHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 988768899999999958998899989989
No 274
>PRK04965 nitric oxide reductase; Provisional
Probab=95.45 E-value=0.022 Score=34.87 Aligned_cols=32 Identities=25% Similarity=0.527 Sum_probs=25.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 38775389999999999779859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
+|||||+.|+-+|..|++.|.+|+|+|+.+.+
T Consensus 145 vVIGgG~IG~E~A~~L~~~G~~Vtvve~~~~l 176 (378)
T PRK04965 145 LVVGGGLIGTELAMDLCRAGKAVTLVDNAASL 176 (378)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 99898388999999999679889997666744
No 275
>PRK07660 consensus
Probab=95.33 E-value=0.02 Score=35.09 Aligned_cols=32 Identities=28% Similarity=0.367 Sum_probs=28.9
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 38775389999999999779859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
-|||||.-|...|..++++|++|+++|.+++.
T Consensus 7 aViGaG~MG~gIA~~~a~~G~~V~l~D~~~~~ 38 (283)
T PRK07660 7 VVIGAGQMGSGIAQVCAMAGYDVKVQDLKQEQ 38 (283)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCHHH
T ss_conf 99896989999999999669818999798899
No 276
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit; InterPro: IPR011281 Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favoured under different circumstances. This entry represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in Escherichia coli and other proteobacteria, and in a few other lineages. However, excluded are all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.; GO: 0016627 oxidoreductase activity acting on the CH-CH group of donors, 0050660 FAD binding, 0006099 tricarboxylic acid cycle.
Probab=95.33 E-value=0.018 Score=35.49 Aligned_cols=175 Identities=19% Similarity=0.208 Sum_probs=88.0
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECC-CCCC----CCC---CEEE-EC---------------------HHHHHHHH
Q ss_conf 38775389999999999779859999568-7655----577---1366-78---------------------88999999
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKK-DQLS----DSG---FGIQ-IS---------------------PNASRILK 50 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~-~~~~----~~g---~gi~-l~---------------------p~~~~~L~ 50 (380)
||||||=|||-+|+.|++.|+++.++-|= |.-+ .+| +++. ++ ..++++|-
T Consensus 6 viVGaGGAGlRaAl~la~~G~~tAv~tKlfPTRSHTvAAQGGI~AALgN~~PeD~W~WHmyDTVKGsDyLgDQDAiE~Mc 85 (615)
T TIGR01816 6 VIVGAGGAGLRAALQLAKGGLNTAVVTKLFPTRSHTVAAQGGISAALGNVEPEDDWRWHMYDTVKGSDYLGDQDAIEYMC 85 (615)
T ss_pred EEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 98868756899999863279238898313688641122344578885177879886364031000565212468998862
Q ss_pred HCCCH--HHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC--E---EEEEEC--CHHHHHHHHHHHHCCCEE-E
Q ss_conf 88994--789862688430699978854433345543234444782--4---786200--013478899732068725-6
Q gi|254780168|r 51 RIGIL--DQLEDIWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGG--I---YGVVKR--HTLQKILLNHIQTQPLAR-L 120 (380)
Q Consensus 51 ~lGi~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~i~r--~~l~~~L~~~~~~~~~~~-~ 120 (380)
+-.+. =+|+..|.|-... .+|+...+ +++....+-... . .+.-+| +.|.+.|+++.-+..... +
T Consensus 86 ~~apeAV~ELEhmG~PFsRT-----~~GkIyQR-~FGG~t~dfGK~g~v~R~C~aADRTGH~~LhTLYQ~nvk~~t~FF~ 159 (615)
T TIGR01816 86 KEAPEAVLELEHMGMPFSRT-----EEGKIYQR-PFGGHTRDFGKGGAVERACAAADRTGHAILHTLYQQNVKADTSFFN 159 (615)
T ss_pred HHHHHHHHHHHHCCCCCCCC-----CCCCCCCC-CCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 31357787665277797888-----89833207-7869752115633232420001420257999987666431874475
Q ss_pred EEEE---------C----CCCCCCCCCCCCCC--EEEEEEEEECCCCCCCHHHCCCCCCCCCCC---EEEEEECCCCCCC
Q ss_conf 4210---------1----23443211234531--035689974367663121128533443110---1578603654465
Q gi|254780168|r 121 HLST---------H----ITHPDCTQISKINN--QKPDLLVGADGLNSNIRHYIDTQPITFSGD---VVLRCLIPQNNAP 182 (380)
Q Consensus 121 ~~~~---------~----v~~~~~~~~~~~~~--~~adlvIgADG~~S~vR~~l~~~~~~~~~~---~~~~~~i~~~~~~ 182 (380)
+|-. . +..+....+++|+. .+|+-||-|-|-.-++=+.... ....+|. .++|.=+|..++.
T Consensus 160 E~~A~DL~~~~dG~sGPv~~GViA~~l~tGe~h~frAKaVvlATGG~GR~Y~sttn-A~t~TGDG~gi~~RaGlPlqDmE 238 (615)
T TIGR01816 160 EFYALDLIMEEDGESGPVCRGVIAYELETGEIHVFRAKAVVLATGGYGRIYKSTTN-AHTLTGDGVGIVLRAGLPLQDME 238 (615)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 02211046525789588799889876058888899541078973786405676644-56552136888872688711322
No 277
>KOG1238 consensus
Probab=95.30 E-value=0.017 Score=35.54 Aligned_cols=32 Identities=28% Similarity=0.466 Sum_probs=28.6
Q ss_pred CEECCHHHHHHHHHHHHHC-CCEEEEEECCCCC
Q ss_conf 3877538999999999977-9859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHR-GIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~-G~~v~i~Er~~~~ 32 (380)
||||||-||+++|..|++. .++|.|+|+-..+
T Consensus 61 IVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238 61 IVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred EEECCCCHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 998987312788876513887349999568997
No 278
>KOG2404 consensus
Probab=95.28 E-value=0.021 Score=34.97 Aligned_cols=33 Identities=27% Similarity=0.551 Sum_probs=29.2
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
||||+|+|||+++..+-..|-.|+++|+...+.
T Consensus 13 vVIGgGLAGLsasn~iin~gg~V~llek~~s~G 45 (477)
T KOG2404 13 VVIGGGLAGLSASNDIINKGGIVILLEKAGSIG 45 (477)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 998774032356777874487599982467767
No 279
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.26 E-value=0.017 Score=35.61 Aligned_cols=52 Identities=21% Similarity=0.215 Sum_probs=35.3
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCH
Q ss_conf 877538999999999977985999956876555771366788899999988994
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGIL 55 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~ 55 (380)
|||+|.-|...|..++.+|++|+++|.++...+.... .-.+.+..|++.|+.
T Consensus 12 VIGaG~MG~giAa~~a~~G~~V~l~D~~~~a~~~~~~--~i~~~~~~l~~~~~~ 63 (321)
T PRK07066 12 AIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRA--NVANAWPALERQGLA 63 (321)
T ss_pred EECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH--HHHHHHHHHHHCCCC
T ss_conf 9888788899999999479859999698889999999--999999999866899
No 280
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.24 E-value=0.023 Score=34.65 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=28.8
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 8775389999999999779859999568765
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
|||||.-|...|..++++|++|+++|.+++.
T Consensus 7 ViGaG~mG~~IA~~~a~~G~~V~l~D~~~~~ 37 (284)
T PRK07819 7 VVGAGQMGSGIAEVCARAGVDVLVFETTEEA 37 (284)
T ss_pred EECCCHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 9897789999999999579908999798899
No 281
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.22 E-value=0.021 Score=34.95 Aligned_cols=30 Identities=30% Similarity=0.536 Sum_probs=28.1
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 877538999999999977985999956876
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
|||||.-|...|..++++|++|+++|.+++
T Consensus 10 ViGAG~MG~gIA~~~a~~G~~V~l~D~~~~ 39 (310)
T PRK06130 10 IIGAGAMGSGIAALFASKGLDVVLIDPMPG 39 (310)
T ss_pred EECCCHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 978779999999999858998899979999
No 282
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.21 E-value=0.022 Score=34.84 Aligned_cols=32 Identities=22% Similarity=0.512 Sum_probs=29.1
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 38775389999999999779859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
-|||||.-|.-.|..++++|++|+++|.+++.
T Consensus 6 ~ViGaG~MG~~IA~~~a~~G~~V~l~D~~~e~ 37 (289)
T PRK09260 6 VVVGAGVMGRGIAYVFASSGFQTTLVDISQEQ 37 (289)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCHHH
T ss_conf 99796887899999999689988999799899
No 283
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.21 E-value=0.028 Score=34.13 Aligned_cols=31 Identities=29% Similarity=0.606 Sum_probs=28.2
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 3877538999999999977985999956876
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
||+|.|.+|.++|..|.++|++|+++|.+..
T Consensus 11 LV~G~G~sG~s~a~~L~~~G~~V~~~D~~~~ 41 (448)
T PRK03803 11 IVVGLGKSGMSLVRFLARQGYQFAVTDTREN 41 (448)
T ss_pred EEEEECHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 9999899999999999978895999918999
No 284
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.21 E-value=0.032 Score=33.77 Aligned_cols=31 Identities=26% Similarity=0.493 Sum_probs=28.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 3877538999999999977985999956876
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
+|+|.|.+|+++|..|.++|.+|.+.|.++.
T Consensus 11 lV~GlG~sG~a~a~~L~~~G~~V~~~D~~~~ 41 (501)
T PRK02006 11 LVLGLGESGLAMARWCARHGCRLRVADTREA 41 (501)
T ss_pred EEEEECHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 9983368899999999978984999989999
No 285
>pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=95.20 E-value=0.024 Score=34.58 Aligned_cols=30 Identities=27% Similarity=0.415 Sum_probs=28.0
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 877538999999999977985999956876
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
|||.|-.||.+|..|+++|++|..+|.++.
T Consensus 5 ViGlGyVGl~~a~~la~~G~~V~g~D~d~~ 34 (185)
T pfam03721 5 VIGLGYVGLPTAVCLAEIGHDVVGVDINQS 34 (185)
T ss_pred EECCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 989787489999999948993999979989
No 286
>PRK09117 consensus
Probab=95.14 E-value=0.025 Score=34.44 Aligned_cols=31 Identities=29% Similarity=0.467 Sum_probs=28.5
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 8775389999999999779859999568765
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
|||||.-|...|..++++|++|.++|.+++.
T Consensus 7 ViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~ 37 (282)
T PRK09117 7 IIGAGTMGNGIAQACAVAGLDVVMVDISDAA 37 (282)
T ss_pred EECCCHHHHHHHHHHHHCCCCEEEEECCHHH
T ss_conf 9897799999999999679968999898899
No 287
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=95.11 E-value=0.032 Score=33.74 Aligned_cols=33 Identities=24% Similarity=0.534 Sum_probs=29.4
Q ss_pred CEECCHHHHHHHHHHHHHCC--CEEEEEECCCCCC
Q ss_conf 38775389999999999779--8599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRG--IQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G--~~v~i~Er~~~~~ 33 (380)
||||||-+|+.+|..|.++- .+++++|+++..-
T Consensus 7 VIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl 41 (405)
T COG1252 7 VILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL 41 (405)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 99898679999999764167887189991887666
No 288
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=95.05 E-value=0.05 Score=32.40 Aligned_cols=55 Identities=24% Similarity=0.477 Sum_probs=38.2
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCC-CCCCCCEEEEC----HHHHHHHHHCCCHHHHHH
Q ss_conf 3877538999999999977985999956876-55577136678----889999998899478986
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQ-LSDSGFGIQIS----PNASRILKRIGILDQLED 60 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~-~~~~g~gi~l~----p~~~~~L~~lGi~~~~~~ 60 (380)
+||||||+|-.+|+.-++.|.+|.|+|...+ + .|..|+ | +-..|..-+.+++++.
T Consensus 127 vIIG~G~GGy~AAi~Aaq~GLKvaiiegekd~l----GGTClNrGCIP-SKALL~as~~~re~~~ 186 (673)
T PTZ00153 127 AIIGCGVGGHAAAINAMERGLKVIIFAGDEDCI----GGTCVNVGCIP-SKALLYATGKYRELKN 186 (673)
T ss_pred EEECCCCCHHHHHHHHHHCCCEEEEEECCCCCC----CCEEECCCCHH-HHHHHHHHHHHHHHHH
T ss_conf 999987628999999998498699993687874----77242777321-1999987357998861
No 289
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=94.97 E-value=0.025 Score=34.45 Aligned_cols=53 Identities=15% Similarity=0.110 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHCCCEEEEEEECC-CCCC--CCCCCCCCCEEEEEEEEECCCCCC
Q ss_conf 0134788997320687256421012-3443--211234531035689974367663
Q gi|254780168|r 102 HTLQKILLNHIQTQPLARLHLSTHI-THPD--CTQISKINNQKPDLLVGADGLNSN 154 (380)
Q Consensus 102 ~~l~~~L~~~~~~~~~~~~~~~~~v-~~~~--~~~~~~~~~~~adlvIgADG~~S~ 154 (380)
.+..--+.+.++...++.+..++.. .+.+ .+.+.++..+..|+||-|=|..+.
T Consensus 57 ~~i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~ 112 (405)
T COG1252 57 SEIAIPLRALLRKSGNVQFVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGSETN 112 (405)
T ss_pred HHEECCHHHHHCCCCCEEEEEEEEEEECCCCCEEEECCCCCCCCCEEEEECCCCCC
T ss_conf 65213089984235744899978999715679899578870236389994587667
No 290
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=94.95 E-value=0.28 Score=27.26 Aligned_cols=152 Identities=20% Similarity=0.260 Sum_probs=77.9
Q ss_pred CEECCHHHHHHHHHHHHHC--CCEEEEEECCCCCCC--------CCCEE------EECH----------HHHHHHHHCC-
Q ss_conf 3877538999999999977--985999956876555--------77136------6788----------8999999889-
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHR--GIQSCVLEKKDQLSD--------SGFGI------QISP----------NASRILKRIG- 53 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~--G~~v~i~Er~~~~~~--------~g~gi------~l~p----------~~~~~L~~lG- 53 (380)
++||||+-+.|++..|+.. .++++||||-+.+.. .|.|- ..+| .++++=+++.
T Consensus 13 vLIGaGIMSaTLg~lL~el~P~~~I~i~Erl~~~A~ESS~~wNNAGTGHaa~CELNYTp~~~dG~i~i~KA~~Ine~Fe~ 92 (499)
T PRK05257 13 VLIGAGIMSATLGTLLKELEPEWSITMFERLDGVALESSNGWNNAGTGHSALCELNYTPEQADGSIDISKAVKINEQFQI 92 (499)
T ss_pred EEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99995288999999999709987489999246005450766554544021302214887767983708999999999999
Q ss_pred ---CHHHHHHC---------CCCCCCEEEEECCCCCC--------CCC---CCCCCCCCCC---------------CCCE
Q ss_conf ---94789862---------68843069997885443--------334---5543234444---------------7824
Q gi|254780168|r 54 ---ILDQLEDI---------WIEPEDFVFRSGSTLKE--------LSR---FSCKNYSRNN---------------WGGI 95 (380)
Q Consensus 54 ---i~~~~~~~---------~~~~~~~~~~~~~~~~~--------~~~---~~~~~~~~~~---------------~~~~ 95 (380)
.|..+... -.+..++.|..|..... +.. +....+..+. ...+
T Consensus 93 SrQfWs~lv~~g~l~~P~~FI~~vPHmSfV~G~~nv~fLrkR~~al~~~~lF~~Mefsed~~~i~~W~PLvm~gR~~~e~ 172 (499)
T PRK05257 93 SRQFWAYLVEKGVLPDPRSFINPVPHMSFVWGEDNVAFLKKRYEALKASPLFAGMEFSEDPAQIKEWAPLMMEGRDPSEK 172 (499)
T ss_pred HHHHHHHHHHCCCCCCHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHCCHHCCCCCCCCC
T ss_conf 99999999975887896885356883478888587899999999874386878857547999998635430069998985
Q ss_pred E--------EEEECCHHHHHHHHHHHHCCCEEEEEEECCCCCCC-------CCCCC-----CCCEEEEEE-EEECCCCC
Q ss_conf 7--------86200013478899732068725642101234432-------11234-----531035689-97436766
Q gi|254780168|r 96 Y--------GVVKRHTLQKILLNHIQTQPLARLHLSTHITHPDC-------TQISK-----INNQKPDLL-VGADGLNS 153 (380)
Q Consensus 96 ~--------~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~-----~~~~~adlv-IgADG~~S 153 (380)
. --|.-..|-+.|.+.+...+++.++++++|++... +.+.+ ..+++|++| |||-| .|
T Consensus 173 vAaTr~~~GTDVnFGaLT~~l~~~l~~~~~~~l~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~fVFiGAGG-~a 250 (499)
T PRK05257 173 VAATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGTWTVTVKDLKTGEKRTVRAKFVFIGAGG-GA 250 (499)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCCCEEEEEEECCCCCEEEEEECEEEECCCC-HH
T ss_conf 0058347875456899999999999758983899368875608889998799999878897279982569988881-45
No 291
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.93 E-value=0.078 Score=31.09 Aligned_cols=31 Identities=26% Similarity=0.483 Sum_probs=28.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 3877538999999999977985999956876
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
+|+|.|.+|.++|..|.++|.+|.++|+++.
T Consensus 18 ~i~GlG~sG~a~a~~L~~~g~~v~~~D~~~~ 48 (458)
T PRK01710 18 AVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred EEEEECHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 9997878899999999978897999989884
No 292
>pfam07992 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=94.92 E-value=0.039 Score=33.14 Aligned_cols=47 Identities=19% Similarity=0.129 Sum_probs=28.4
Q ss_pred HHHHHHHHCCCEEEEEEECCCCC----CCCCCCCCCCEEEEEEEEECCCCCC
Q ss_conf 88997320687256421012344----3211234531035689974367663
Q gi|254780168|r 107 ILLNHIQTQPLARLHLSTHITHP----DCTQISKINNQKPDLLVGADGLNSN 154 (380)
Q Consensus 107 ~L~~~~~~~~~~~~~~~~~v~~~----~~~~~~~~~~~~adlvIgADG~~S~ 154 (380)
...+...+.. +.+..+++|+.. ..+.+.++.++++|.||-|-|....
T Consensus 58 ~~~~~~~~~~-i~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~ 108 (277)
T pfam07992 58 RPLEQYKDEG-IEVLLGTGVTAIDKAGKKVTLDDGKELTYDKLVIATGARPR 108 (277)
T ss_pred HHHHHHHHCC-CEEEECCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCC
T ss_conf 9999998759-79996877999978999899878939985999998799862
No 293
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.88 E-value=0.032 Score=33.73 Aligned_cols=31 Identities=26% Similarity=0.415 Sum_probs=28.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 3877538999999999977985999956876
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
.|+|+|-.|+.+|..|++.|++|+++.|.+.
T Consensus 4 ~IiGaGaiG~~~a~~L~~ag~~V~li~r~~~ 34 (307)
T PRK06522 4 AILGAGAIGGLFGARLAQAGHDVTLVARGAT 34 (307)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 9999149999999999848998899978888
No 294
>TIGR02053 MerA mercuric reductase; InterPro: IPR011796 This entry represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH .; GO: 0016152 mercury (II) reductase activity, 0045340 mercury ion binding, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport, 0050787 detoxification of mercury ion.
Probab=94.87 E-value=0.015 Score=36.05 Aligned_cols=32 Identities=28% Similarity=0.637 Sum_probs=26.0
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 38775389999999999779859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
+|||||+.|+=+|.+++|.|.+|+|++|+..+
T Consensus 185 ~vIGgg~~g~E~aQ~faRLG~~V~~~~RS~~l 216 (494)
T TIGR02053 185 VVIGGGAIGVELAQAFARLGSEVTILQRSERL 216 (494)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEHHHHHHHH
T ss_conf 88865289999999998577614036799864
No 295
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=94.81 E-value=0.037 Score=33.29 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=21.1
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
+|||||..|+-+|-.++..|-+|||+|..+.+-
T Consensus 324 ~IIGgGvIGlEFAsvy~aLGseVTvIE~~~~IL 356 (673)
T PTZ00153 324 GIIGMGIIGIEFADIYTALGSEIIFFDYSPELL 356 (673)
T ss_pred EEECCCEEHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 998776401319999997698699995366568
No 296
>pfam02558 ApbA Ketopantoate reductase PanE/ApbA. This is a family of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, EC:1.1.1.169. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) <= 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway.
Probab=94.75 E-value=0.048 Score=32.52 Aligned_cols=30 Identities=27% Similarity=0.446 Sum_probs=27.7
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 387753899999999997798599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
.|+|+|-.|+.+|..|+++|++|+++.|.+
T Consensus 2 ~IiGaGaiG~~~a~~L~~ag~~V~lv~R~~ 31 (150)
T pfam02558 2 AILGAGAVGSLYGARLARAGHDVTLIARGR 31 (150)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 999668999999999997799289997563
No 297
>KOG4254 consensus
Probab=94.71 E-value=0.021 Score=35.02 Aligned_cols=30 Identities=43% Similarity=0.671 Sum_probs=28.4
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 387753899999999997798599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
+|||+|.-||++|.+|++.|.+|.|+|++.
T Consensus 18 vvig~GhnGL~aaayl~r~g~~V~vlerrh 47 (561)
T KOG4254 18 VVIGGGHNGLTAAAYLARYGQSVAVLERRH 47 (561)
T ss_pred EEECCCCCCHHHHHHHHHCCCCEEEEEEEE
T ss_conf 996588663447899975386069999863
No 298
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.58 E-value=0.057 Score=32.01 Aligned_cols=31 Identities=32% Similarity=0.601 Sum_probs=28.4
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 3877538999999999977985999956876
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
+|+|.|.+|.++|..|.++|.+|+++|.++.
T Consensus 21 lV~GlG~SG~s~a~~L~~~G~~v~~~D~~~~ 51 (476)
T PRK00141 21 LVAGAGVSGLGIAKMLSELGCDVVVADDNET 51 (476)
T ss_pred EEEEECHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 9992278899999999978997999989987
No 299
>KOG2311 consensus
Probab=94.57 E-value=0.055 Score=32.10 Aligned_cols=29 Identities=28% Similarity=0.496 Sum_probs=26.6
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 38775389999999999779859999568
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKK 29 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~ 29 (380)
||||||-||+-+|.+-++.|-+.+++-.+
T Consensus 32 vVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311 32 VVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred EEECCCCCCHHHHHHHHHCCCCEEEEECC
T ss_conf 99878752048889887418734786325
No 300
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.46 E-value=0.045 Score=32.73 Aligned_cols=30 Identities=33% Similarity=0.493 Sum_probs=28.2
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 877538999999999977985999956876
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
|||.|=.||.+|..|+.+|++|+.+|.++.
T Consensus 5 ViGlGyVGl~~a~~lA~~G~~V~g~D~d~~ 34 (411)
T TIGR03026 5 VIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EECCCHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 989787799999999948994899989999
No 301
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.016 Score=35.85 Aligned_cols=26 Identities=23% Similarity=0.558 Sum_probs=20.8
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 38775389999999999779859999
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVL 26 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~ 26 (380)
|||||||+|.++|++-+|+|++.-|+
T Consensus 215 LvVGgGPAgaaAAIYaARKGiRTGl~ 240 (520)
T COG3634 215 LVVGGGPAGAAAAIYAARKGIRTGLV 240 (520)
T ss_pred EEECCCCCHHHHHHHHHHHCCHHHHH
T ss_conf 99868863167899998612111001
No 302
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.43 E-value=0.066 Score=31.57 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=28.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 3877538999999999977985999956876
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
+|+|.|.+|+++|..|.++|++|++.|.++.
T Consensus 13 ~viGlG~sG~s~a~~L~~~G~~V~~~D~~~~ 43 (450)
T PRK02472 13 LVLGLAKSGYAAAKLLHKLGANVTVNDGKPF 43 (450)
T ss_pred EEEEECHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 9997789999999999988698999848866
No 303
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.39 E-value=0.045 Score=32.73 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=27.7
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 387753899999999997798599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
.|+|+|-.|...|..|+++|++|+++.|.+
T Consensus 6 ~IiGaGAiG~~~a~~L~~ag~dV~lv~r~~ 35 (305)
T PRK05708 6 HILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEEECH
T ss_conf 998823999999999984899739999478
No 304
>pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain.
Probab=94.39 E-value=0.065 Score=31.63 Aligned_cols=31 Identities=26% Similarity=0.461 Sum_probs=28.4
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 3877538999999999977985999956876
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
.|+|||--|.++|..|++.|++|+++.|+++
T Consensus 4 ~IiGaG~wGtAla~~la~n~~~V~l~~r~~~ 34 (159)
T pfam01210 4 AVLGAGSWGTALAKVLARNGHEVRLWGRDEE 34 (159)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEEECCH
T ss_conf 9999699999999999987998999990436
No 305
>PRK08268 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.32 E-value=0.055 Score=32.09 Aligned_cols=32 Identities=22% Similarity=0.376 Sum_probs=29.3
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 87753899999999997798599995687655
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
|||||.-|.-.|..++++|++|+++|.+++.-
T Consensus 8 ViGaGtMG~gIA~~~a~aG~~V~l~D~~~~~l 39 (503)
T PRK08268 8 VIGAGAMGAGIAQVAAQAGHTVLLYDARAGAA 39 (503)
T ss_pred EECCCHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 97968899999999993899089997998999
No 306
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.28 E-value=0.063 Score=31.73 Aligned_cols=30 Identities=27% Similarity=0.521 Sum_probs=27.9
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 387753899999999997798599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
+|+|.|.+|.++|..|.++|++|.+.|.++
T Consensus 16 ~V~GlG~sG~a~a~~L~~~G~~v~~~D~~~ 45 (487)
T PRK03369 16 LVAGAGVTGRAVLAALTRFGARPTVCDDDP 45 (487)
T ss_pred EEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 999156838999999997869799998982
No 307
>TIGR02061 aprA adenylylsulfate reductase, alpha subunit; InterPro: IPR011803 During dissimilatory sulphate reduction or sulphur oxidation, adenylylsulphate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulphite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. This entry describes the alpha subunit of APS reductase, which shares a common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins..
Probab=94.27 E-value=0.038 Score=33.25 Aligned_cols=32 Identities=25% Similarity=0.461 Sum_probs=27.7
Q ss_pred CEECCHHHHHHHHHHHHH----CCCEEEEEECCCCC
Q ss_conf 387753899999999997----79859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGH----RGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~----~G~~v~i~Er~~~~ 32 (380)
||||||++|+=+|..-+. +|++|+|+||..--
T Consensus 3 LivGgG~ggcGaAfEA~yWg~~~GLKi~lveKA~~e 38 (651)
T TIGR02061 3 LIVGGGLGGCGAAFEAAYWGKKKGLKIVLVEKAAVE 38 (651)
T ss_pred EEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 787178552027899998740688379996114654
No 308
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.26 E-value=0.052 Score=32.28 Aligned_cols=30 Identities=30% Similarity=0.428 Sum_probs=28.1
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 877538999999999977985999956876
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
|||.|=+||.+|..|+.+|++|..+|.++.
T Consensus 8 ViGlGYVGL~~a~~lA~~G~~Vig~D~d~~ 37 (415)
T PRK11064 8 VIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred EECCCHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 988687789999999968894899989999
No 309
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.19 E-value=0.064 Score=31.65 Aligned_cols=29 Identities=24% Similarity=0.454 Sum_probs=26.7
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 38775389999999999779859999568
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKK 29 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~ 29 (380)
.|+|+|=.|+..|..|+++|++|+++.|.
T Consensus 6 ~IiGaGAvG~~~a~~L~~aG~~V~lv~r~ 34 (341)
T PRK08229 6 CVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECH
T ss_conf 99896799999999998589987999567
No 310
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=94.18 E-value=0.42 Score=26.06 Aligned_cols=153 Identities=16% Similarity=0.178 Sum_probs=76.5
Q ss_pred CEECCHHHHHHHHHHHHHC-----CCEEEEEECCCCCC--------------------CC-----CCE------EEECHH
Q ss_conf 3877538999999999977-----98599995687655--------------------57-----713------667888
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHR-----GIQSCVLEKKDQLS--------------------DS-----GFG------IQISPN 44 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~-----G~~v~i~Er~~~~~--------------------~~-----g~g------i~l~p~ 44 (380)
|||||||+|+.+|+.|+-. ...+.++|+..... .. |+| +.+.|.
T Consensus 22 vivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~~r~~~~~~~~~~~c~~~~~~~I~~G~GgaG~fs~g~lnl~P~ 101 (486)
T COG2509 22 VIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIEQRLCPKDEKKLEKCPKCDPCPIVIGFGGAGLFSDGILNLRPI 101 (486)
T ss_pred EEECCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCCEECCCC
T ss_conf 89777726789999985321347732899998025555422664455521167899740576326633112420202566
Q ss_pred -HHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCCCCC---CCCCCC--CCCCCEEEEE-EC-------CHHHHHHHH
Q ss_conf -999999889947898626884306999788544333455---432344--4478247862-00-------013478899
Q gi|254780168|r 45 -ASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELSRFS---CKNYSR--NNWGGIYGVV-KR-------HTLQKILLN 110 (380)
Q Consensus 45 -~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~i-~r-------~~l~~~L~~ 110 (380)
+-.+=+..+=++.+..............+..+..+..-. ..+... ...+....-+ .| ....+-+++
T Consensus 102 ~Gg~~~~~~~d~~~~~~~~~~vd~~~vqfG~~g~~~~~~~~e~ikd~e~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~ 181 (486)
T COG2509 102 RGGDVHERTKDTDEFWELVNLVDESNVQFGAPGAGTFSDLTEQIKDIEFRAAGAGEEILPIYQRHIGTDILPKVVKNIRE 181 (486)
T ss_pred CCCCHHHHHCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 66104545178588888871341654103798674447845666679999709996056124651575206999999999
Q ss_pred HHHHCCCEEEEEEECCCCCC-------CCCCCCCCCEEEEEEEEECCCCCC
Q ss_conf 73206872564210123443-------211234531035689974367663
Q gi|254780168|r 111 HIQTQPLARLHLSTHITHPD-------CTQISKINNQKPDLLVGADGLNSN 154 (380)
Q Consensus 111 ~~~~~~~~~~~~~~~v~~~~-------~~~~~~~~~~~adlvIgADG~~S~ 154 (380)
.+.+.+ .++++.++|++.+ .+..+++.+..+|.||-|=|..|+
T Consensus 182 ~l~~~G-~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~ 231 (486)
T COG2509 182 YLESLG-GEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGR 231 (486)
T ss_pred HHHHCC-CEEEEEEEEEEEEECCCCEEEEECCCCCEEECCEEEECCCCCHH
T ss_conf 998558-28995207889981587079999257848732779990476467
No 311
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=94.17 E-value=0.054 Score=32.15 Aligned_cols=53 Identities=28% Similarity=0.471 Sum_probs=35.7
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC----CCCCCEE-EECHHHHHHHHHCCC
Q ss_conf 38775389999999999779859999568765----5577136-678889999998899
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL----SDSGFGI-QISPNASRILKRIGI 54 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~----~~~g~gi-~l~p~~~~~L~~lGi 54 (380)
||+|.|-.|..+|..|.++| +|+++|++++. ++.|..+ .-.+.....|+++|+
T Consensus 2 iI~G~g~~G~~la~~L~~~~-~v~vId~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i 59 (115)
T pfam02254 2 IIIGYGRVGRSLAEELREGG-PVVVIDKDPERVEELREEGVPVVVGDATDEEVLEEAGI 59 (115)
T ss_pred EEECCCHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHCCCEEEEEECCCHHHHHHHCC
T ss_conf 99878889999999998089-99999998799877886698699995688667876192
No 312
>pfam01262 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain. This family now also contains the lysine 2-oxoglutarate reductases.
Probab=94.13 E-value=0.062 Score=31.75 Aligned_cols=31 Identities=29% Similarity=0.529 Sum_probs=28.7
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 3877538999999999977985999956876
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
+|+|+|.+|+.+|......|.+|+++|+++.
T Consensus 24 vViG~Gv~G~~A~~~A~~lGa~V~v~D~~~~ 54 (150)
T pfam01262 24 VVIGGGVVGLGAAATAKGLGAPVTILDVRPE 54 (150)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 9989878999999999867998999729999
No 313
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.04 E-value=0.086 Score=30.78 Aligned_cols=31 Identities=29% Similarity=0.555 Sum_probs=28.0
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 3877538999999999977985999956876
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
+|+|.|.+|.++|..|.++|.+|.++|.+..
T Consensus 10 ~V~GlG~sG~s~~~~L~~~G~~v~~~D~~~~ 40 (438)
T PRK03806 10 VIIGLGLTGLSCVDFFLARGVTPRVMDTRMT 40 (438)
T ss_pred EEEEECHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 9994578889999999978996999989999
No 314
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.97 E-value=0.085 Score=30.80 Aligned_cols=31 Identities=19% Similarity=0.426 Sum_probs=28.4
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 3877538999999999977985999956876
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
+|+|.|.+|+++|..|.++|++|+++|.++.
T Consensus 9 ~viGlG~sG~s~a~~L~~~G~~v~~~D~~~~ 39 (445)
T PRK04308 9 LVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred EEEEECHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 9999899999999999978991999979999
No 315
>PTZ00318 NADH dehydrogenase; Provisional
Probab=93.89 E-value=0.065 Score=31.60 Aligned_cols=33 Identities=27% Similarity=0.307 Sum_probs=20.8
Q ss_pred CCEEECHHHCCCC---CCCHHHHHCCCHHHHHHHHHHHC
Q ss_conf 8711211111244---83033420130367999999852
Q gi|254780168|r 276 KNAVLIGDAAHTL---LPFAAQGANMAIEDAYALSYLLG 311 (380)
Q Consensus 276 ~rv~LiGDAAH~~---~P~~GqG~n~al~Da~~La~~L~ 311 (380)
.+|+-+||.|..- .|-.+| .|++-+..||+.|.
T Consensus 317 p~VfAiGD~A~~~~~plP~tAQ---vA~QQG~~lAkni~ 352 (514)
T PTZ00318 317 PDVFAIGDCAANEELPLPTLAA---VASRQGRYLAKKIN 352 (514)
T ss_pred CCEEEECCCCCCCCCCCCCCHH---HHHHHHHHHHHHHH
T ss_conf 9768842334678998999307---89999999999999
No 316
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.61 E-value=0.11 Score=30.10 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=28.2
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 3877538999999999977985999956876
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
+|+|.|.+|.++|..|.++|.+|.++|.++.
T Consensus 13 ~v~GlG~sG~s~a~~L~~~G~~V~~~D~~~~ 43 (457)
T PRK01390 13 ALFGLGGSGLATARALKAGGAEVIAWDDNPD 43 (457)
T ss_pred EEEEECHHHHHHHHHHHHCCCEEEEEECCCH
T ss_conf 9994369999999999978997999939920
No 317
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.44 E-value=0.093 Score=30.54 Aligned_cols=30 Identities=27% Similarity=0.502 Sum_probs=27.9
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 877538999999999977985999956876
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
|+|.|=+||+.|..|++.||+|+.+|.++.
T Consensus 5 viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 5 VIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred EECCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 988855688789999870984899957889
No 318
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.41 E-value=0.11 Score=30.16 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=26.9
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 387753899999999997798599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
.|+|+|-.|+.+|..|+++|++|+++-|..
T Consensus 4 ~I~GaGAiG~~~a~~L~~~g~~V~lv~r~~ 33 (306)
T PRK12921 4 AVVGAGAVGGTFGARLLEAGRDVTFLGRSA 33 (306)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 999924999999999983699889997000
No 319
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=93.39 E-value=0.13 Score=29.46 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=27.1
Q ss_pred EECCHHHHHHHHHHHHHC----CCEEEEEECCCCCC
Q ss_conf 877538999999999977----98599995687655
Q gi|254780168|r 2 IIGAGISGLTLAASLGHR----GIQSCVLEKKDQLS 33 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~----G~~v~i~Er~~~~~ 33 (380)
|||+|+|+|++|..|-|- |-+++|+|..+.+.
T Consensus 27 iiGsGiasLAaA~~LIrDa~~pg~~IhIlE~~~~~G 62 (577)
T PRK13977 27 LIGSGLASLAAAVFLIRDGHMPGENITILEELPIPG 62 (577)
T ss_pred EECCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
T ss_conf 988778999999999860687965228975688899
No 320
>KOG2960 consensus
Probab=93.38 E-value=0.052 Score=32.30 Aligned_cols=32 Identities=25% Similarity=0.469 Sum_probs=27.7
Q ss_pred CEECCHHHHHHHHHHHHH--CCCEEEEEECCCCC
Q ss_conf 387753899999999997--79859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGH--RGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~--~G~~v~i~Er~~~~ 32 (380)
+|||||-+||++|+..++ -.++|.|||.+-.|
T Consensus 80 viVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaP 113 (328)
T KOG2960 80 VIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAP 113 (328)
T ss_pred EEECCCCCCCCEEEEEECCCCCCEEEEEEEEECC
T ss_conf 9987786654146663036998469999700369
No 321
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=93.34 E-value=0.12 Score=29.75 Aligned_cols=12 Identities=25% Similarity=0.493 Sum_probs=8.2
Q ss_pred CCCEEECHHHCC
Q ss_conf 687112111112
Q gi|254780168|r 275 KKNAVLIGDAAH 286 (380)
Q Consensus 275 ~~rv~LiGDAAH 286 (380)
.|.-+..|||++
T Consensus 459 ~g~~v~~GDa~~ 470 (558)
T PRK10669 459 RGIRAVLGNAAN 470 (558)
T ss_pred CCCEEEEECCCC
T ss_conf 899799978998
No 322
>pfam06100 Strep_67kDa_ant Streptococcal 67 kDa myosin-cross-reactive antigen like family. Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis.
Probab=93.30 E-value=0.13 Score=29.46 Aligned_cols=31 Identities=32% Similarity=0.399 Sum_probs=26.8
Q ss_pred EECCHHHHHHHHHHHHHC----CCEEEEEECCCCC
Q ss_conf 877538999999999977----9859999568765
Q gi|254780168|r 2 IIGAGISGLTLAASLGHR----GIQSCVLEKKDQL 32 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~----G~~v~i~Er~~~~ 32 (380)
|||+|+|+|++|..|-|- |-+++|+|+.+.+
T Consensus 7 ivGsGiasLaaA~~LIrDa~~pg~~IhIlE~~~~~ 41 (500)
T pfam06100 7 IIGSGLASLAAAVFLIRDGQMDGERIHILEELPLP 41 (500)
T ss_pred EECCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
T ss_conf 98976899998898864278786413898558889
No 323
>TIGR00692 tdh L-threonine 3-dehydrogenase; InterPro: IPR004627 L-threonine 3-dehydrogenase (1.1.1.103 from EC) is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. It catalyses the conversion of L-threonine and NAD+ to L-2-amino-3-oxobutanoate and NADH. In Escherichia coli His-90 modulates substrate specificity and is believed part of the active site. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but are not detected by this HMM. ; GO: 0008270 zinc ion binding, 0008743 L-threonine 3-dehydrogenase activity, 0006567 threonine catabolic process.
Probab=93.28 E-value=0.095 Score=30.49 Aligned_cols=14 Identities=14% Similarity=0.238 Sum_probs=7.0
Q ss_pred CCCEEECHHHCCCC
Q ss_conf 68711211111244
Q gi|254780168|r 275 KKNAVLIGDAAHTL 288 (380)
Q Consensus 275 ~~rv~LiGDAAH~~ 288 (380)
.||+.|+|==-|.|
T Consensus 254 gGR~~~Lglpp~~v 267 (341)
T TIGR00692 254 GGRVALLGLPPSDV 267 (341)
T ss_pred CCEEEECCCCCCCE
T ss_conf 88089813689761
No 324
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=93.27 E-value=0.1 Score=30.31 Aligned_cols=44 Identities=20% Similarity=0.352 Sum_probs=33.0
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHH
Q ss_conf 387753899999999997798599995687655577136678889999998899478
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQ 57 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~ 57 (380)
.|||-|+.|-++|+.|+++|++|.-+++++ .+++.-.++|+.|+
T Consensus 5 ~IiGlGLIGgSla~al~~~~~~V~g~d~~~-------------~~~~~A~~~g~id~ 48 (280)
T PRK07417 5 GIVGLGLIGGSLGLDLRSLGHTVYGVSRRE-------------STCERAIERGLVDE 48 (280)
T ss_pred EEEECCHHHHHHHHHHHHCCCEEEEEECCH-------------HHHHHHHHCCCCCE
T ss_conf 999318579999999996899799997999-------------99999998699752
No 325
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=93.07 E-value=0.13 Score=29.45 Aligned_cols=29 Identities=31% Similarity=0.401 Sum_probs=26.6
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 38775389999999999779859999568
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKK 29 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~ 29 (380)
.|+|+|=.|+.+|..|++.|++|+++-|.
T Consensus 9 ~IiGaGAiG~~~a~~L~~aG~~V~li~r~ 37 (313)
T PRK06249 9 AIIGTGAIGGFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 99991499999999999669956999675
No 326
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent; InterPro: IPR011275 This entry contains bacterial and archaeal malate dehydrogenases, which convert malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterised , and have been used to determine members of this group. ; GO: 0030060 L-malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=93.02 E-value=0.084 Score=30.86 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=23.8
Q ss_pred EECCHHHHHHHHHHHHHC--CCEEEEEEC
Q ss_conf 877538999999999977--985999956
Q gi|254780168|r 2 IIGAGISGLTLAASLGHR--GIQSCVLEK 28 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~--G~~v~i~Er 28 (380)
|||||-+|.|+|..||++ +-++.|+|=
T Consensus 6 vIGAGfvGaTTAf~lA~KeLard~VLlDi 34 (308)
T TIGR01763 6 VIGAGFVGATTAFLLAEKELARDVVLLDI 34 (308)
T ss_pred EECCCCCHHHHHHHHHHHHHCCEEEEEEE
T ss_conf 97068612589999986740671689850
No 327
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.88 E-value=0.14 Score=29.37 Aligned_cols=30 Identities=20% Similarity=0.482 Sum_probs=27.8
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 387753899999999997798599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
+|+|.|.+|.++|..|.++|..|.++|.+.
T Consensus 7 lV~GlG~SG~s~a~~L~~~g~~v~~~D~~~ 36 (418)
T PRK00683 7 VVLGLGVTGKSVARFLAQKGVYVIGVDNSL 36 (418)
T ss_pred EEEEECHHHHHHHHHHHHCCCEEEEECCCH
T ss_conf 998088879999999997829899982981
No 328
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.81 E-value=0.13 Score=29.59 Aligned_cols=13 Identities=15% Similarity=0.187 Sum_probs=6.5
Q ss_pred CCCEEECHHHCCC
Q ss_conf 6871121111124
Q gi|254780168|r 275 KKNAVLIGDAAHT 287 (380)
Q Consensus 275 ~~rv~LiGDAAH~ 287 (380)
.|+|+++|=....
T Consensus 262 gG~v~~vGv~~~~ 274 (350)
T COG1063 262 GGTVVVVGVYGGE 274 (350)
T ss_pred CCEEEEEECCCCC
T ss_conf 9899999515886
No 329
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=92.79 E-value=0.17 Score=28.77 Aligned_cols=33 Identities=18% Similarity=0.334 Sum_probs=29.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 387753899999999997798599995687655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
+|||||.+++-.|+.|++-+-+|+|+.|++.++
T Consensus 147 ~VIGGG~~A~EeA~~Ls~~askVtII~r~d~f~ 179 (555)
T TIGR03143 147 FVIGGGFAAAEEAVFLTRYASKVTVIVREPDFT 179 (555)
T ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 998388899999999997489089999787568
No 330
>pfam00996 GDI GDP dissociation inhibitor.
Probab=92.72 E-value=0.16 Score=28.87 Aligned_cols=39 Identities=15% Similarity=0.371 Sum_probs=33.5
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEE
Q ss_conf 387753899999999997798599995687655577136
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGI 39 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi 39 (380)
||+|-|+.=+.+|.+|++.|.+|..+||++......+.+
T Consensus 8 IIlGTGL~EsILaaaLS~~GKkVLHiDrN~yYGg~~ASl 46 (439)
T pfam00996 8 IVLGTGLKECILSGLLSVDGKKVLHIDRNDYYGGESASL 46 (439)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC
T ss_conf 997998799999999973699899977998778630152
No 331
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.61 E-value=0.091 Score=30.60 Aligned_cols=31 Identities=26% Similarity=0.568 Sum_probs=27.2
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 3877538999999999977985999956876
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
+|+|||.+|+.++..-++.|-.|+.+|.++.
T Consensus 169 lViGaGVAGlqAi~tA~~LGA~V~a~DvR~~ 199 (510)
T PRK09424 169 LVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (510)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 9974647779999999627978999658788
No 332
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=92.55 E-value=0.28 Score=27.22 Aligned_cols=45 Identities=22% Similarity=0.460 Sum_probs=34.3
Q ss_pred CEECCHHHHHHHHHHHHHCCC--EEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHH
Q ss_conf 387753899999999997798--5999956876555771366788899999988994789
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI--QSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQL 58 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~--~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~~ 58 (380)
.|||-|+.|-++|..|+++|. +|.-+|+ ++.+++...++|+.|+.
T Consensus 10 ~IiGlGLIGgSlA~alk~~~~~~~I~g~d~-------------~~~~l~~A~~~g~id~~ 56 (307)
T PRK07502 10 ALIGLGLIGSSLARAIRRQGLAGEIVGAAR-------------SAETRARARELGLGDRV 56 (307)
T ss_pred EEEEECHHHHHHHHHHHHCCCCCEEEEEEC-------------CHHHHHHHHHCCCCCHH
T ss_conf 999278799999999985499857999849-------------99999999986997511
No 333
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=92.31 E-value=0.14 Score=29.25 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=28.6
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 87753899999999997798599995687655
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
|||||.-|.-.|..++++|++|+++|.+++.-
T Consensus 318 ViGaG~MG~GIA~~~a~aG~~V~l~D~~~e~l 349 (715)
T PRK11730 318 VLGAGIMGGGIAYQSASKGVPVIMKDINQKAL 349 (715)
T ss_pred EECCCCCHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 97877107999999995799579997899999
No 334
>KOG0404 consensus
Probab=92.11 E-value=0.13 Score=29.62 Aligned_cols=107 Identities=14% Similarity=0.210 Sum_probs=58.0
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 38775389999999999779859999568765557713667888999999889947898626884306999788544333
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELS 80 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
+|||.||++-++|++++++.++.++||---.- .+.| -+. ..+-. .+.
T Consensus 12 ~IiGSGPAa~tAAiYaaraelkPllfEG~~~~-------~i~p----------------------GGQ-LtTTT---~ve 58 (322)
T KOG0404 12 VIIGSGPAAHTAAIYAARAELKPLLFEGMMAN-------GIAP----------------------GGQ-LTTTT---DVE 58 (322)
T ss_pred EEECCCCHHHHHHHHHHHCCCCCEEEEEEECC-------CCCC----------------------CCE-EEEEE---CCC
T ss_conf 99835806777899976502675688111116-------8688----------------------863-45652---013
Q ss_pred CCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCCC-----CCCCCCCCCEEEEEEEEECCCC
Q ss_conf 45543234444782478620001347889973206872564210123443-----2112345310356899743676
Q gi|254780168|r 81 RFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHPD-----CTQISKINNQKPDLLVGADGLN 152 (380)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~~-----~~~~~~~~~~~adlvIgADG~~ 152 (380)
++| .+.. .|.-.+|.+.++++....+. ++. -..|++.+ -..+++....++|-||-|-|+.
T Consensus 59 NfP--GFPd--------gi~G~~l~d~mrkqs~r~Gt-~i~-tEtVskv~~sskpF~l~td~~~v~~~avI~atGAs 123 (322)
T KOG0404 59 NFP--GFPD--------GITGPELMDKMRKQSERFGT-EII-TETVSKVDLSSKPFKLWTDARPVTADAVILATGAS 123 (322)
T ss_pred CCC--CCCC--------CCCCHHHHHHHHHHHHHHCC-EEE-EEEHHHCCCCCCCEEEEECCCCEEEEEEEEECCCC
T ss_conf 489--9975--------45668899999988875164-654-10022222368976988437724530699921630
No 335
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=91.84 E-value=0.22 Score=28.04 Aligned_cols=31 Identities=26% Similarity=0.494 Sum_probs=28.6
Q ss_pred CEECCHHHHHHHHHHHHHCC-CEEEEEECCCC
Q ss_conf 38775389999999999779-85999956876
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRG-IQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G-~~v~i~Er~~~ 31 (380)
||+|+|-+|.+.|..|++.| .+|+|-+|+.+
T Consensus 5 lviGaG~Vg~~va~~la~~~d~~V~iAdRs~~ 36 (389)
T COG1748 5 LVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE 36 (389)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEEECCHH
T ss_conf 99898666799999998578962999848888
No 336
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=91.71 E-value=0.29 Score=27.19 Aligned_cols=40 Identities=23% Similarity=0.426 Sum_probs=34.9
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEE
Q ss_conf 3877538999999999977985999956876555771366
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQ 40 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~ 40 (380)
||+|-|+.-+.++.+|+.+|.+|..|||++...+..+++.
T Consensus 10 ii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~aslt 49 (434)
T COG5044 10 IILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLT 49 (434)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEE
T ss_conf 9962668999998886226751799707876675333343
No 337
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase; InterPro: IPR003710 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway . Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE . ApbA and PanE are allelic .; GO: 0008677 2-dehydropantoate 2-reductase activity, 0006206 pyrimidine base metabolic process.
Probab=91.69 E-value=0.23 Score=27.81 Aligned_cols=29 Identities=34% Similarity=0.492 Sum_probs=27.5
Q ss_pred CEECCHHHHHHHHHHHHHCC--CEEEEEECC
Q ss_conf 38775389999999999779--859999568
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRG--IQSCVLEKK 29 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G--~~v~i~Er~ 29 (380)
.|+|+|=.|+..|..|+++| ++|+++-|.
T Consensus 3 ~i~G~GA~G~l~ga~L~~~g~~~~V~~~~R~ 33 (332)
T TIGR00745 3 AIIGAGAVGSLYGARLARAGANHDVTLLARG 33 (332)
T ss_pred EEEECCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 8995178899999998731899518999887
No 338
>TIGR01810 betA choline dehydrogenase; InterPro: IPR011533 Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both Gram-positive and Gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti , this enzyme is found associated in a transcriptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other Gram-positive organisms have been shown to employ a different enzymatic system, utilising a soluble choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase . This enzyme is a member of the GMC oxidoreductase family, sharing a common evolutionary origin and enzymatic reaction with alcohol dehydrogenase . Out grouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. ; GO: 0008812 choline dehydrogenase activity, 0019285 glycine betaine biosynthetic process from choline.
Probab=91.66 E-value=0.092 Score=30.59 Aligned_cols=28 Identities=43% Similarity=0.517 Sum_probs=25.6
Q ss_pred CEECCHHHHHHHHHHHHHCC-CEEEEEEC
Q ss_conf 38775389999999999779-85999956
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRG-IQSCVLEK 28 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G-~~v~i~Er 28 (380)
||||+|=||.+||..|+.-+ -+|+|+|.
T Consensus 3 iIIG~GSAGsvLa~RLsED~~nsVlvLEa 31 (540)
T TIGR01810 3 IIIGAGSAGSVLATRLSEDVSNSVLVLEA 31 (540)
T ss_pred EEECCCCHHHHHCCCCCCCCCCCEEEEEC
T ss_conf 88637714666130001358766799824
No 339
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.50 E-value=0.36 Score=26.55 Aligned_cols=31 Identities=19% Similarity=0.475 Sum_probs=27.3
Q ss_pred CEECCHHHHHHHHHHHHHCCC--EEEEEECCCC
Q ss_conf 387753899999999997798--5999956876
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI--QSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~--~v~i~Er~~~ 31 (380)
.|||+|-+|.++|+.|..+|+ ++.+||.++.
T Consensus 7 ~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~~ 39 (312)
T cd05293 7 TVVGVGQVGMACAISILAKGLADELVLVDVVED 39 (312)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 998978889999999996699887999938898
No 340
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=91.27 E-value=0.24 Score=27.69 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=29.4
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 38775389999999999779859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
+|+|-|..|+++|..|.+.|.+|+++|.++.+
T Consensus 11 ~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 11 LVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred EEEECCCCCHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 99926651099999999779869998389876
No 341
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=91.26 E-value=0.13 Score=29.44 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=26.2
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 3877538999999999977985999956
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEK 28 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er 28 (380)
||||=||||-++|+.|-+.|+.|+-+|-
T Consensus 405 LVvGlGPAG~tLsH~Lln~Gh~Vv~IDG 432 (1048)
T PRK06567 405 LVTGLGPAGFSLSYYLLRSGHNVTAIDG 432 (1048)
T ss_pred EEEECCCCCHHHHHHHHHCCCCEEEECC
T ss_conf 9992486520188998747872898654
No 342
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.12 E-value=0.21 Score=28.13 Aligned_cols=109 Identities=18% Similarity=0.144 Sum_probs=56.9
Q ss_pred CEECCHHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCEEEECHHHH--HHHHHCCCHHHHHHCCCCCCCEEEEECCCCC
Q ss_conf 38775389999999999779-85999956876555771366788899--9999889947898626884306999788544
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRG-IQSCVLEKKDQLSDSGFGIQISPNAS--RILKRIGILDQLEDIWIEPEDFVFRSGSTLK 77 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G-~~v~i~Er~~~~~~~g~gi~l~p~~~--~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~ 77 (380)
|.||.||.-|.+|++|..++ +++..+||.+.++=.+.-+ |....+ .+|+.| .....|.....|.+
T Consensus 9 iGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGml-legstlQv~FlkDL------VTl~~PTs~ySFLN----- 76 (436)
T COG3486 9 IGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGML-LEGSTLQVPFLKDL------VTLVDPTSPYSFLN----- 76 (436)
T ss_pred EEECCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCC-CCCCCCCCCCHHHH------CCCCCCCCCHHHHH-----
T ss_conf 8870483278999873502575257873478887678755-57864445005632------55358998307999-----
Q ss_pred CCCCCCCCCCCCCCCC---CEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf 3334554323444478---247862000134788997320687256421012344
Q gi|254780168|r 78 ELSRFSCKNYSRNNWG---GIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP 129 (380)
Q Consensus 78 ~~~~~~~~~~~~~~~~---~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~ 129 (380)
.-......+. .....+.|.+..+.+.=.+...+ .++++++|++.
T Consensus 77 ------YL~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~--~~rfg~~V~~i 123 (436)
T COG3486 77 ------YLHEHGRLYEFLNYETFHIPRREYNDYCQWAASQLP--SLRFGEEVTDI 123 (436)
T ss_pred ------HHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC--CCCCCCEECCC
T ss_conf ------998706576554200235558889999999984087--23368701221
No 343
>KOG0042 consensus
Probab=91.00 E-value=0.084 Score=30.84 Aligned_cols=51 Identities=27% Similarity=0.442 Sum_probs=35.8
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCC-CCCEEEECHHHHHHHHH
Q ss_conf 3877538999999999977985999956876555-77136678889999998
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSD-SGFGIQISPNASRILKR 51 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~-~g~gi~l~p~~~~~L~~ 51 (380)
||||||-+|.-+|+--+-.|+++.++|+..+-+- .+..--|-..|+|.|+.
T Consensus 71 LIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLek 122 (680)
T KOG0042 71 LIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEK 122 (680)
T ss_pred EEECCCCCCCCEEEHHHCCCCEEEEEECCCCCCCCCCCCHHHHCCCHHHHHH
T ss_conf 9988886675412120114521477742664577655402544045999999
No 344
>PRK08507 prephenate dehydrogenase; Validated
Probab=90.91 E-value=0.51 Score=25.48 Aligned_cols=44 Identities=27% Similarity=0.502 Sum_probs=31.7
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEE--EECCCCCCCCCCEEEECHHHHHHHHHCCCHHH
Q ss_conf 3877538999999999977985999--95687655577136678889999998899478
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCV--LEKKDQLSDSGFGIQISPNASRILKRIGILDQ 57 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i--~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~ 57 (380)
.|||.|+.|-++|+.|++.|..+.| +|+ ++.+++.-.++|+-|+
T Consensus 4 ~IiGlGLiGgSla~alk~~~~~~~V~g~d~-------------~~~~~~~A~~~g~id~ 49 (275)
T PRK08507 4 GIIGLGLMGGSLGLALKENKLISCVYGYDH-------------NEEHEKDALDLGLVDE 49 (275)
T ss_pred EEEECCHHHHHHHHHHHHCCCCCEEEEEEC-------------CHHHHHHHHHCCCCCC
T ss_conf 999008789999999995099867999959-------------9999999998699861
No 345
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=90.72 E-value=0.33 Score=26.79 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=27.9
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 3877538999999999977985999956876
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
.|+|||-=|.++|..|++.|++|+++.|+++
T Consensus 5 ~ViGaGawGtAlA~~la~n~~~V~lw~r~~~ 35 (325)
T PRK00094 5 AVLGAGSWGTALAILLARNGHDVVLWGRDPE 35 (325)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEEECHH
T ss_conf 9989899999999999978997899983899
No 346
>pfam03446 NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase. The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Probab=90.71 E-value=0.34 Score=26.67 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=28.3
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 8775389999999999779859999568765
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
+||-|.-|...|..|.++|++|.++++++..
T Consensus 6 ~IGlG~MG~~ma~~L~~~g~~v~v~d~~~~~ 36 (163)
T pfam03446 6 FIGLGVMGSPMALNLLKAGYTVTVYNRTPEK 36 (163)
T ss_pred EEEEHHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 9836798999999999779969999797887
No 347
>PRK06545 prephenate dehydrogenase; Validated
Probab=90.71 E-value=0.33 Score=26.81 Aligned_cols=46 Identities=22% Similarity=0.362 Sum_probs=34.0
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHH
Q ss_conf 387753899999999997798599995687655577136678889999998899478
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQ 57 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~ 57 (380)
.|||-|+.|-++|++|+++|..+.|+.-++ .+..++.-..+|+-|+
T Consensus 4 ~IiGlGLIGgSlalalk~~g~~~~i~~~d~-----------~~~~l~~A~~~g~id~ 49 (357)
T PRK06545 4 LIVGLGLIGGSLALAIKAAGPDVFIIGYDP-----------SGAQLARALGFGVIDE 49 (357)
T ss_pred EEEEECHHHHHHHHHHHHCCCCEEEEEECC-----------CHHHHHHHHHCCCCCE
T ss_conf 999778789999999985499769999669-----------9999999986899773
No 348
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=90.62 E-value=0.15 Score=29.06 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=24.4
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 387753899999999997798599995
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLE 27 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~E 27 (380)
.||||=.=-+.++..|+++|.+|.++-
T Consensus 6 aviGGD~Rq~~l~~~L~~~g~~V~~~g 32 (296)
T PRK08306 6 AVIGGDARQLELIRKLVELGAKVSLVG 32 (296)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 997875899999999997799799983
No 349
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=90.62 E-value=0.4 Score=26.18 Aligned_cols=46 Identities=22% Similarity=0.453 Sum_probs=34.4
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHH
Q ss_conf 387753899999999997798599995687655577136678889999998899478
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQ 57 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~ 57 (380)
+|||.|..|-++|..|+.+|+.|.++.++.. ....+.=..+|+-++
T Consensus 7 ~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~-----------~~~~~~a~~lgv~d~ 52 (279)
T COG0287 7 GIVGLGLMGGSLARALKEAGLVVRIIGRDRS-----------AATLKAALELGVIDE 52 (279)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEECCCCC-----------HHHHHHHHHCCCCHH
T ss_conf 9987746779999999976984799724774-----------677877663585301
No 350
>KOG0405 consensus
Probab=90.55 E-value=0.78 Score=24.20 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=27.7
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 387753899999999997798599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
+|||||-+|+..|..-+..|-++.|+|..-
T Consensus 24 lvIGgGSGGvasARrAa~~GAkv~l~E~~f 53 (478)
T KOG0405 24 LVIGGGSGGVASARRAASHGAKVALCELPF 53 (478)
T ss_pred EEECCCCCHHHHHHHHHHCCCEEEEEECCC
T ss_conf 998478613677677875385379986377
No 351
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=90.42 E-value=0.41 Score=26.10 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=13.4
Q ss_pred HHCCCHHHHHHHHHHHC
Q ss_conf 20130367999999852
Q gi|254780168|r 295 GANMAIEDAYALSYLLG 311 (380)
Q Consensus 295 G~n~al~Da~~La~~L~ 311 (380)
|.|.|++.|..|+..-+
T Consensus 360 GGnsA~eeAl~La~~a~ 376 (515)
T TIGR03140 360 GGNSGIEAAIDLAGIVR 376 (515)
T ss_pred CCHHHHHHHHHHHHHCC
T ss_conf 97799999999984177
No 352
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=90.38 E-value=0.48 Score=25.66 Aligned_cols=31 Identities=35% Similarity=0.474 Sum_probs=26.5
Q ss_pred CEECCHHHHHHHHHHHHHCCC-EEEEEECCCC
Q ss_conf 387753899999999997798-5999956876
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI-QSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~-~v~i~Er~~~ 31 (380)
-|||+|-+|.++|+.|..+|+ ++.+||..+.
T Consensus 2 ~IIGaG~VG~~~a~~l~~~~~~el~L~D~~~~ 33 (300)
T cd01339 2 SIIGAGNVGATLAQLLALKELGDVVLLDIVEG 33 (300)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 89896888999999998579967999809998
No 353
>pfam10727 Rossmann-like Rossmann-like domain. This family of proteins contain a Rossmann-like domain.
Probab=90.22 E-value=0.27 Score=27.41 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=24.0
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 877538999999999977985999956
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEK 28 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er 28 (380)
|||+|-+|..++.+|+++||+|.=+-.
T Consensus 2 iIGaGrvG~~L~~al~~aGh~v~gv~s 28 (111)
T pfam10727 2 IISAGRVGVALGEALERAGHVVHAISA 28 (111)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 437657799999999978982899983
No 354
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=89.91 E-value=0.35 Score=26.60 Aligned_cols=30 Identities=33% Similarity=0.525 Sum_probs=26.1
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 387753899999999997798599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
.|+|+|-.|+.+|..|+++|.+|+++=|.+
T Consensus 4 ~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 4 LILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECHH
T ss_conf 998787899999999985899579981089
No 355
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=89.52 E-value=0.34 Score=26.65 Aligned_cols=31 Identities=26% Similarity=0.445 Sum_probs=28.0
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 8775389999999999779859999568765
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
|||||.-|.--|..++..|++|+++|.+++.
T Consensus 8 ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~ 38 (307)
T COG1250 8 VIGAGVMGAGIAAVFALAGYDVVLKDISPEA 38 (307)
T ss_pred EECCCCHHHHHHHHHHHCCCCEEEEECCHHH
T ss_conf 9724602099999997349956999589899
No 356
>KOG4716 consensus
Probab=89.52 E-value=0.44 Score=25.90 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=28.5
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECC-CCCC
Q ss_conf 38775389999999999779859999568-7655
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKK-DQLS 33 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~-~~~~ 33 (380)
||||||-+||++|-.-++.|-+|.++|-- |.|.
T Consensus 23 IviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~ 56 (503)
T KOG4716 23 IVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQ 56 (503)
T ss_pred EEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 9986885136677998860870799961245788
No 357
>KOG1336 consensus
Probab=89.49 E-value=0.61 Score=24.93 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=21.2
Q ss_pred CEECCHHHHHHHHHHHHHCCCE--EEEEE
Q ss_conf 3877538999999999977985--99995
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQ--SCVLE 27 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~--v~i~E 27 (380)
+|||+||+|..++..+++.|+. .+++-
T Consensus 78 vivGgG~~g~vaie~~r~~g~~~ri~l~~ 106 (478)
T KOG1336 78 VIVGGGPGGAVAIETLRQVGFTERIALVK 106 (478)
T ss_pred EEECCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 99768820335576677528876607874
No 358
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase; InterPro: IPR011304 This entry represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme functions as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities.; GO: 0004459 L-lactate dehydrogenase activity, 0019642 anaerobic glycolysis, 0005737 cytoplasm.
Probab=89.41 E-value=0.29 Score=27.13 Aligned_cols=31 Identities=29% Similarity=0.459 Sum_probs=27.4
Q ss_pred EECCHHHHHHHHHHHHHCCC--EEEEEECCCCC
Q ss_conf 87753899999999997798--59999568765
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGI--QSCVLEKKDQL 32 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~--~v~i~Er~~~~ 32 (380)
|||+|-+|.++|.+|..+|+ ++.|+|-+++.
T Consensus 1 iiG~G~VGss~A~a~~~~g~a~E~vliDin~~k 33 (302)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGLADEIVLIDINKDK 33 (302)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEEEECCHHH
T ss_conf 911486189999999731503188788347577
No 359
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=89.22 E-value=0.45 Score=25.83 Aligned_cols=30 Identities=23% Similarity=0.501 Sum_probs=28.1
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 877538999999999977985999956876
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
|||-|.-|.-+|+.|+++|++|.||+|+++
T Consensus 10 iIGLGvMG~nmA~Nl~~~G~~V~vynrt~~ 39 (474)
T PTZ00142 10 LIGLAVMGQNLSLNMYSRGFKVSVYNRTTE 39 (474)
T ss_pred EEEEHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 873638679999999978987999779879
No 360
>KOG1335 consensus
Probab=88.82 E-value=0.21 Score=28.11 Aligned_cols=18 Identities=17% Similarity=0.106 Sum_probs=11.6
Q ss_pred CCEEEEEEEEECCCCCCC
Q ss_conf 310356899743676631
Q gi|254780168|r 138 NNQKPDLLVGADGLNSNI 155 (380)
Q Consensus 138 ~~~~adlvIgADG~~S~v 155 (380)
++.+||.+..|-|++--+
T Consensus 299 ~~le~DvlLVsiGRrP~t 316 (506)
T KOG1335 299 ETLECDVLLVSIGRRPFT 316 (506)
T ss_pred EEEEEEEEEEEECCCCCC
T ss_conf 688842899980664454
No 361
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase; InterPro: IPR006322 These sequences represent one of two closely related subfamilies of glutathione reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione reductases of animals, yeast, and a number of animal-resident bacteria. ; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=88.64 E-value=0.45 Score=25.84 Aligned_cols=30 Identities=27% Similarity=0.567 Sum_probs=28.4
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 387753899999999997798599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
||||||=+|++.|..-+..|-++.|+|.+.
T Consensus 6 lvIGGGSGGiAsa~RAa~~GA~~llvE~~~ 35 (475)
T TIGR01421 6 LVIGGGSGGIASARRAAEHGAKALLVEEKK 35 (475)
T ss_pred EEECCCCHHHHHHHHHHHHCCEEEEEEHHC
T ss_conf 998368615788898885076078762000
No 362
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=88.61 E-value=0.82 Score=24.07 Aligned_cols=32 Identities=22% Similarity=0.489 Sum_probs=27.3
Q ss_pred CEECCHHHHHHHHHHHHHCCC--EEEEEECCCCC
Q ss_conf 387753899999999997798--59999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI--QSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~--~v~i~Er~~~~ 32 (380)
-|||+|-+|.++|+.|..+|+ ++.+||..+..
T Consensus 10 ~IIGaG~VG~~~a~~l~~~~l~~el~LiD~~~~~ 43 (315)
T PRK00066 10 VLVGDGAVGSSYAYALVNQGIADELVIIDINKEK 43 (315)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 9999798899999999866998889998089871
No 363
>pfam00056 Ldh_1_N lactate/malate dehydrogenase, NAD binding domain. L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold.
Probab=88.47 E-value=0.69 Score=24.58 Aligned_cols=31 Identities=26% Similarity=0.499 Sum_probs=26.5
Q ss_pred CEECCH-HHHHHHHHHHHHCCC--EEEEEECCCC
Q ss_conf 387753-899999999997798--5999956876
Q gi|254780168|r 1 MIIGAG-ISGLTLAASLGHRGI--QSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG-~aGl~~A~~L~~~G~--~v~i~Er~~~ 31 (380)
.||||| -.|.++|+.|..+|+ ++.++|.+++
T Consensus 4 ~IIGagg~VG~~~A~~l~~~~l~~elvL~D~~~~ 37 (142)
T pfam00056 4 AVVGAGGGVGSSLAFALALQGLADELVLVDINKD 37 (142)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf 9989877899999999974796634788505776
No 364
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.44 E-value=0.86 Score=23.92 Aligned_cols=32 Identities=31% Similarity=0.458 Sum_probs=27.2
Q ss_pred CEECCHHHHHHHHHHHHHCCC--EEEEEECCCCC
Q ss_conf 387753899999999997798--59999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI--QSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~--~v~i~Er~~~~ 32 (380)
-|||+|-+|.++|+.|..+|+ ++.++|.++..
T Consensus 4 ~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~~~ 37 (308)
T cd05292 4 AIVGAGFVGSTTAYALLLRGLASEIVLVDINKAK 37 (308)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 9999488899999999867998879999188984
No 365
>KOG2495 consensus
Probab=88.37 E-value=0.16 Score=28.97 Aligned_cols=33 Identities=33% Similarity=0.276 Sum_probs=22.6
Q ss_pred CCEEECHHHC-CCCCCCHHHHHCCCHHHHHHHHHHHC
Q ss_conf 8711211111-24483033420130367999999852
Q gi|254780168|r 276 KNAVLIGDAA-HTLLPFAAQGANMAIEDAYALSYLLG 311 (380)
Q Consensus 276 ~rv~LiGDAA-H~~~P~~GqG~n~al~Da~~La~~L~ 311 (380)
.+|+-|||.| |+--|-.+|=++ +-+..||.+++
T Consensus 360 ~nvfAiGDca~~~~~~~tAQVA~---QqG~yLAk~fn 393 (491)
T KOG2495 360 KNVFAIGDCADQRGLKPTAQVAE---QQGAYLAKNFN 393 (491)
T ss_pred CCEEEECCCCCCCCCCCHHHHHH---HHHHHHHHHHH
T ss_conf 76277213224656760778988---88899999999
No 366
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.30 E-value=0.7 Score=24.54 Aligned_cols=29 Identities=21% Similarity=0.285 Sum_probs=25.2
Q ss_pred CEECC-HHHHHHHHHHHHHCCC--EEEEEECC
Q ss_conf 38775-3899999999997798--59999568
Q gi|254780168|r 1 MIIGA-GISGLTLAASLGHRGI--QSCVLEKK 29 (380)
Q Consensus 1 iIvGa-G~aGl~~A~~L~~~G~--~v~i~Er~ 29 (380)
.|||| |-+|.++|+.|..+|+ ++.++|-+
T Consensus 4 ~IIGA~G~VG~~~A~~l~~~~~~~elvLiDi~ 35 (310)
T cd01337 4 AVLGAAGGIGQPLSLLLKLNPLVSELALYDIV 35 (310)
T ss_pred EEECCCCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 99999981899999999729997769998277
No 367
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=88.25 E-value=0.8 Score=24.13 Aligned_cols=29 Identities=34% Similarity=0.552 Sum_probs=26.4
Q ss_pred CEECCHHHHHHHHHHHHHCCC-EEEEEECC
Q ss_conf 387753899999999997798-59999568
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI-QSCVLEKK 29 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~-~v~i~Er~ 29 (380)
+|||+|=-|..+|..|++.|+ +++|+|++
T Consensus 28 lIVGaGGLGs~~a~~La~aGVG~l~ivD~D 57 (337)
T PRK12475 28 LIIGAGALGAANAEALVRAGIGKLTIADRD 57 (337)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 999777778999999998289869998499
No 368
>PRK10083 putative dehydrogenase; Provisional
Probab=88.22 E-value=0.48 Score=25.64 Aligned_cols=10 Identities=30% Similarity=0.394 Sum_probs=6.8
Q ss_pred CCCEEECHHH
Q ss_conf 6871121111
Q gi|254780168|r 275 KKNAVLIGDA 284 (380)
Q Consensus 275 ~~rv~LiGDA 284 (380)
.|+++++|=.
T Consensus 252 gG~iv~~G~~ 261 (339)
T PRK10083 252 AARIVLMGFS 261 (339)
T ss_pred CEEEEEEECC
T ss_conf 8099999258
No 369
>KOG0024 consensus
Probab=88.10 E-value=1.4 Score=22.52 Aligned_cols=14 Identities=29% Similarity=0.442 Sum_probs=6.7
Q ss_pred CCCEEECHHHCCCC
Q ss_conf 68711211111244
Q gi|254780168|r 275 KKNAVLIGDAAHTL 288 (380)
Q Consensus 275 ~~rv~LiGDAAH~~ 288 (380)
.|-++|+|=-++.+
T Consensus 266 gGt~vlvg~g~~~~ 279 (354)
T KOG0024 266 GGTVVLVGMGAEEI 279 (354)
T ss_pred CCEEEEECCCCCCC
T ss_conf 87899965478765
No 370
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=87.95 E-value=1.4 Score=22.49 Aligned_cols=41 Identities=24% Similarity=0.366 Sum_probs=30.7
Q ss_pred EECCHHHHHH-HHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCC
Q ss_conf 8775389999-9999997798599995687655577136678889999998899
Q gi|254780168|r 2 IIGAGISGLT-LAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGI 54 (380)
Q Consensus 2 IvGaG~aGl~-~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi 54 (380)
+||.|=+|++ +|..|+++|++|+..|+.+. | ..+.|+++|+
T Consensus 13 ~iGigG~GmsalA~~l~~~G~~V~gsD~~~~-----------~-~~~~L~~~Gi 54 (459)
T PRK00421 13 FVGIGGIGMSGLAEVLLNLGYKVSGSDLKES-----------A-VTQRLLELGA 54 (459)
T ss_pred EEEECHHHHHHHHHHHHHCCCEEEEECCCCC-----------H-HHHHHHHCCC
T ss_conf 9986688899999999968993999889899-----------7-8999997879
No 371
>PTZ00117 malate dehydrogenase; Provisional
Probab=87.93 E-value=0.96 Score=23.60 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=26.8
Q ss_pred CEECCHHHHHHHHHHHHHCCC-EEEEEECCCCC
Q ss_conf 387753899999999997798-59999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI-QSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~-~v~i~Er~~~~ 32 (380)
.|||+|-+|.++|+.|..+++ ++.++|.++..
T Consensus 5 ~IIGaG~VG~~~A~~l~~~~~~eivLiDi~~~~ 37 (313)
T PTZ00117 5 SIIGSGQIGAIVGLLLLQENLGDVYLYDVIEGV 37 (313)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEEECCCCH
T ss_conf 998979899999999970899879999588983
No 372
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=87.81 E-value=0.85 Score=23.95 Aligned_cols=29 Identities=31% Similarity=0.559 Sum_probs=26.4
Q ss_pred CEECCHHHHHHHHHHHHHCCC-EEEEEECC
Q ss_conf 387753899999999997798-59999568
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI-QSCVLEKK 29 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~-~v~i~Er~ 29 (380)
+|||+|=-|+.+|..|++.|+ +++|+|++
T Consensus 28 lVvGaGGLGs~~a~~La~aGVG~i~ivD~D 57 (339)
T PRK07688 28 LIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 998777777999999998489829998099
No 373
>PRK06223 malate dehydrogenase; Reviewed
Probab=87.74 E-value=0.92 Score=23.71 Aligned_cols=31 Identities=32% Similarity=0.458 Sum_probs=26.7
Q ss_pred CEECCHHHHHHHHHHHHHCCC--EEEEEECCCC
Q ss_conf 387753899999999997798--5999956876
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI--QSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~--~v~i~Er~~~ 31 (380)
.|||+|-+|.++|+.|..+|+ ++.++|..++
T Consensus 4 ~IiGaG~VG~~~a~~l~~~~l~~el~L~Di~~~ 36 (312)
T PRK06223 4 SIIGAGNVGATLAHLLALKELGKDVVLFDIPEG 36 (312)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 999969899999999985799874899769997
No 374
>KOG2755 consensus
Probab=87.67 E-value=0.26 Score=27.52 Aligned_cols=34 Identities=18% Similarity=0.437 Sum_probs=27.1
Q ss_pred CEECCHHHHHHHHHHHHHC--CCEEEEEECCCCCCC
Q ss_conf 3877538999999999977--985999956876555
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHR--GIQSCVLEKKDQLSD 34 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~--G~~v~i~Er~~~~~~ 34 (380)
||||||+||.++|-.|++. .-++.++-.++....
T Consensus 3 ivvgggiagvscaeqla~~~psa~illitass~vks 38 (334)
T KOG2755 3 IVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKS 38 (334)
T ss_pred EEECCCCCCCCHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf 998576143258999975388873899964178887
No 375
>pfam00899 ThiF ThiF family. This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family.
Probab=87.56 E-value=0.94 Score=23.67 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=26.6
Q ss_pred CEECCHHHHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf 387753899999999997798-599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI-QSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~-~v~i~Er~~ 30 (380)
+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 5 livG~GglG~~~~~~La~~Gvg~i~lvD~D~ 35 (134)
T pfam00899 5 LVVGAGGLGSPAAEYLARAGVGKLTLVDFDT 35 (134)
T ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9989888999999999993897499998956
No 376
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC; InterPro: IPR011967 This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring . The sequences included in this entry are all found in possible operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN . Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. .
Probab=87.54 E-value=0.4 Score=26.20 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=29.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 38775389999999999779859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
.|||+|-=|.=.|..-+++||+|.+||-+++-
T Consensus 9 aVIGaGaMGaGIA~VAA~aGH~V~LYD~r~eA 40 (508)
T TIGR02279 9 AVIGAGAMGAGIAQVAARAGHQVLLYDIRAEA 40 (508)
T ss_pred EEECCCCCCHHHHHHHHHCCCEEEEECCCHHH
T ss_conf 99646852103899998259848872288899
No 377
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=87.42 E-value=1 Score=23.34 Aligned_cols=32 Identities=28% Similarity=0.483 Sum_probs=27.4
Q ss_pred CEECCHHHHHHHHHHHHHCCC--EEEEEECCCCC
Q ss_conf 387753899999999997798--59999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI--QSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~--~v~i~Er~~~~ 32 (380)
.|||+|-.|.++|+.|..+|+ ++.++|..+..
T Consensus 2 ~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~~~ 35 (300)
T cd00300 2 TIIGAGNVGAAVAFALIAKGLASELVLVDVNEEK 35 (300)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 8989688999999999867998879998189981
No 378
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.42 E-value=1.1 Score=23.16 Aligned_cols=32 Identities=19% Similarity=0.368 Sum_probs=27.5
Q ss_pred CEECCHHHHHHHHHHHHHCCC--EEEEEECCCCC
Q ss_conf 387753899999999997798--59999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI--QSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~--~v~i~Er~~~~ 32 (380)
.|||+|-.|.++|+.|..+|+ ++.++|.++..
T Consensus 3 ~IIGaG~VG~~~A~~l~~~~~~~elvL~Di~~~~ 36 (307)
T cd05290 3 VVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGV 36 (307)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 9999698999999999856998879999288982
No 379
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase; InterPro: IPR011912 Lipopolysaccharides (LPS) are glycolipids that consitutes the outer monolayer of the outer membranes of most Gram-negative bacteria . They consist of lipid A (endotoxin) which anchors LPS to the outer membrane, a non-repeating core oligosachharide, and an immunogenic O-antigen repeat polymer, which is an oligosaccharide of 1-40 units that variesbetween different strains of bacteria. Although the O-antigen and most of the core domain are not necessary for growth in the lab, they appear to help bacteria resist environmental stresses including the complement system and antibiotics. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of LPS in Gram-negative bacteria . This enzyme is homologous to UDP-glucose 4-epimerase (IPR005886 from INTERPRO) and belongs to the NAD dependent epimerase/dehydratase family. It participates in the biosynthetic pathway leading to incorporation of heptose, a conserved sugar, into the core region of LPS, performing the reaction shown below: ADP-D-glycero-D-manno-heptose = ADP-L-glycero-D-manno-heptose It is a homopentameric enzyme with each monomer composed of two domains: an N-terminal modified Rossman fold domain for NADP binding, and a C-terminal substrate binding domain.; GO: 0008712 ADP-glyceromanno-heptose 6-epimerase activity, 0050661 NADP binding, 0005975 carbohydrate metabolic process.
Probab=87.39 E-value=0.82 Score=24.05 Aligned_cols=128 Identities=21% Similarity=0.260 Sum_probs=65.5
Q ss_pred CEE--CCHHHHHHHHHHHHHCC-C-EEEEEECCCC--CCCCCCEEEECH-------HHHHH---HHHCCCHHHHHHC--C
Q ss_conf 387--75389999999999779-8-5999956876--555771366788-------89999---9988994789862--6
Q gi|254780168|r 1 MII--GAGISGLTLAASLGHRG-I-QSCVLEKKDQ--LSDSGFGIQISP-------NASRI---LKRIGILDQLEDI--W 62 (380)
Q Consensus 1 iIv--GaG~aGl~~A~~L~~~G-~-~v~i~Er~~~--~~~~g~gi~l~p-------~~~~~---L~~lGi~~~~~~~--~ 62 (380)
||| |||..|+.++..|-+.| . +|.|+|+=.. .-+.|..-+|.. ...++ ++.=.+++.+.+. .
T Consensus 1 IiVTGGAGFIGSNlv~~LN~~gP~~dI~vvD~L~~~~~F~ng~~~slg~~kk~~Nl~~~~I~d~i~k~~~~~~l~~~~~~ 80 (353)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGPETDILVVDNLRDDATFENGNPQSLGHFKKFLNLADLEIADYIDKDDLLDRLEKGSEA 80 (353)
T ss_pred CEECCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCC
T ss_conf 95506763689999999964389542888740787552467774322342443255541121335885469999830201
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCCCC-CCCCCCCC
Q ss_conf 884306999788544333455432344447824786200013478899732068725642101234432-11234531
Q gi|254780168|r 63 IEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHPDC-TQISKINN 139 (380)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~ 139 (380)
...-+..|+.|-...+. + ....+.+=.+...-..|.+-|.+..+.-+.-++--+-.++ ..+.++..
T Consensus 81 ~~~~~avfH~GAcS~TT---------e--~D~~~~m~nN~~ys~~Ll~~c~~~~~~~IYASSAatYG~~~~~f~~~~~ 147 (353)
T TIGR02197 81 LGKIEAVFHQGACSDTT---------E--TDGEYMMENNYQYSKRLLDWCAEKGVPFIYASSAATYGDGEAGFREDRE 147 (353)
T ss_pred CCCCCEEEECCHHHHHH---------H--HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCCCCCCCC
T ss_conf 38833799733125358---------8--6279999889999999999999648986885031210768777776656
No 380
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=87.38 E-value=0.68 Score=24.63 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=28.2
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 8775389999999999779859999568765
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
+||-|.=|.-+|..|.++|++|.+|+++++.
T Consensus 5 fIGLG~MG~~mA~nL~~~G~~V~v~dr~~~~ 35 (301)
T PRK09599 5 MIGLGRMGGNMARRLLRGGHEVVGYDRNPEA 35 (301)
T ss_pred EECHHHHHHHHHHHHHHCCCEEEEECCCHHH
T ss_conf 9834587999999999689907997699999
No 381
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=87.33 E-value=0.55 Score=25.24 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=21.9
Q ss_pred EECCHHHHHHHHH-HHHHCCCEEEEEECCCCC
Q ss_conf 8775389999999-999779859999568765
Q gi|254780168|r 2 IIGAGISGLTLAA-SLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 2 IvGaG~aGl~~A~-~L~~~G~~v~i~Er~~~~ 32 (380)
|||||.-|.-.|. .+++.|++|+++|.+++.
T Consensus 314 ViGaG~MG~gIA~~~a~~aG~~V~l~D~~~e~ 345 (706)
T PRK11154 314 VLGGGLMGGGIAYVTATKAGLPVRIKDINPQG 345 (706)
T ss_pred EECCCCCCHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 98647323899999999869879999799999
No 382
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=87.09 E-value=1.1 Score=23.14 Aligned_cols=31 Identities=19% Similarity=0.415 Sum_probs=28.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 3877538999999999977985999956876
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
.|+|||-=|.++|+..++.|++|.+++..+.
T Consensus 16 gIlGgGQLg~Mla~aA~~LG~~vivld~~~d 46 (395)
T PRK09288 16 MLLGSGELGKEVAIEAQRLGVEVIAVDRYAN 46 (395)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 9989889999999999987998999848995
No 383
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=86.99 E-value=1.2 Score=22.96 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=28.8
Q ss_pred CEECC-HHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 38775-3899999999997798599995687655
Q gi|254780168|r 1 MIIGA-GISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGa-G~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
+|.|| |-.|..++..|..+|++|..+.+.....
T Consensus 4 LVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~ 37 (314)
T COG0451 4 LVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGL 37 (314)
T ss_pred EEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 9992887779999999985899799991787543
No 384
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=86.81 E-value=0.96 Score=23.59 Aligned_cols=30 Identities=30% Similarity=0.411 Sum_probs=26.5
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 387753899999999997798599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
.|+|+|-.|..+|..|+++|++|.|--++.
T Consensus 5 ~i~GtGniG~alA~~~a~ag~eV~igs~r~ 34 (211)
T COG2085 5 AIIGTGNIGSALALRLAKAGHEVIIGSSRG 34 (211)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 996257187899999996797399964788
No 385
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=86.57 E-value=0.86 Score=23.93 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=28.1
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 8775389999999999779859999568765
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
+||-|.=|.-+|..|.++|++|.+|+++++.
T Consensus 5 fIGLG~MG~~mA~nL~~~G~~V~v~d~~~~~ 35 (298)
T PRK12490 5 LIGLGKMGGNMAERLREDGHEVVGYDVNQEA 35 (298)
T ss_pred EECHHHHHHHHHHHHHHCCCEEEEECCCHHH
T ss_conf 9834676899999999779948998499899
No 386
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=86.54 E-value=0.97 Score=23.57 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=26.1
Q ss_pred CEECCHHHHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf 387753899999999997798-599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI-QSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~-~v~i~Er~~ 30 (380)
+|||+|-.|-.++..|.+.|. +++|.-|+.
T Consensus 16 lVIGaG~~~~~~~~~L~~~g~~~i~v~nRt~ 46 (134)
T pfam01488 16 LLIGAGEMARLAAKHLLSKGAKKITIANRTL 46 (134)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCH
T ss_conf 9999609999999999975998899954757
No 387
>TIGR01777 yfcH conserved hypothetical protein TIGR01777; InterPro: IPR010099 This entry represents proteins of unknown function including the Escherichia coli YfcH protein..
Probab=86.54 E-value=1 Score=23.35 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=28.0
Q ss_pred CEECC--HHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 38775--3899999999997798599995687655
Q gi|254780168|r 1 MIIGA--GISGLTLAASLGHRGIQSCVLEKKDQLS 33 (380)
Q Consensus 1 iIvGa--G~aGl~~A~~L~~~G~~v~i~Er~~~~~ 33 (380)
||-|| |..|-.++..|.++|++|+++=|++...
T Consensus 2 litGgnTGfiG~~L~~~L~~~g~~V~~l~R~~~~~ 36 (307)
T TIGR01777 2 LITGGNTGFIGRALTQRLTKSGHEVTILTRSPQAE 36 (307)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf 64153302378999999984799899996168643
No 388
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=86.38 E-value=1.1 Score=23.29 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=24.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 3877538999999999977985999956
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEK 28 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er 28 (380)
||||||.++.-=+..|.+.|-.|+|+-+
T Consensus 14 LVVGGG~vA~rK~~~Ll~~gA~VtVvsp 41 (202)
T PRK06718 14 VIVGGGKVAGRRAITLLKYGAHITVISP 41 (202)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEECC
T ss_conf 9988989999999999868996999869
No 389
>PTZ00325 malate dehydrogenase; Provisional
Probab=86.35 E-value=1.1 Score=23.19 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=25.3
Q ss_pred CEECC-HHHHHHHHHHHHHCCC--EEEEEECC
Q ss_conf 38775-3899999999997798--59999568
Q gi|254780168|r 1 MIIGA-GISGLTLAASLGHRGI--QSCVLEKK 29 (380)
Q Consensus 1 iIvGa-G~aGl~~A~~L~~~G~--~v~i~Er~ 29 (380)
.|||| |-+|.++|..|..+|+ +..++|-+
T Consensus 5 ~IIGA~G~VG~s~A~~l~~~~~~~elvL~Di~ 36 (313)
T PTZ00325 5 AVLGAAGGIGQPLSLLLKRNPYVSTLSLYDIV 36 (313)
T ss_pred EEECCCCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 99899986999999999838997779998089
No 390
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=86.35 E-value=1.3 Score=22.75 Aligned_cols=30 Identities=37% Similarity=0.609 Sum_probs=26.5
Q ss_pred EECCHHHHHHHHHHHHHCCC--EEEEEECCCC
Q ss_conf 87753899999999997798--5999956876
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGI--QSCVLEKKDQ 31 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~--~v~i~Er~~~ 31 (380)
|||+|-.|.++|+.|..+++ ++.++|..+.
T Consensus 5 IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~ 36 (306)
T cd05291 5 IIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EECCCHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 99969889999999985799877999818987
No 391
>KOG2304 consensus
Probab=86.27 E-value=0.51 Score=25.46 Aligned_cols=30 Identities=23% Similarity=0.490 Sum_probs=28.1
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 877538999999999977985999956876
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
|||||.-|.-.|...+..|++|.+++++..
T Consensus 16 ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304 16 IVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred EECCCCCCHHHHHHHHHCCCCEEEECCCHH
T ss_conf 875664320399998851994698547778
No 392
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=86.27 E-value=1.1 Score=23.17 Aligned_cols=117 Identities=11% Similarity=0.090 Sum_probs=57.5
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 38775389999999999779859999568765557713667888999999889947898626884306999788544333
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELS 80 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
||||||-+++-=+..|-+.|-.|+|+- |+ +.+ -|++ +.. ...+.+....
T Consensus 28 LVVGGG~VA~RKi~~Ll~agA~VtVVS--P~---------~~~----el~~------L~~----~~~I~~i~r~------ 76 (222)
T PRK05562 28 LVIGGGKAAFIKGKTFLKKGCYVEILS--KE---------FSK----EFLD------LKK----YGNLKLIKGN------ 76 (222)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEC--CC---------CCH----HHHH------HHH----CCCEEEEECC------
T ss_conf 999987999999999987899899987--86---------688----9999------997----5986999686------
Q ss_pred CCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCE-EEEEEEE-ECCCCCCC
Q ss_conf 455432344447824786200013478899732068725642101234432112345310-3568997-43676631
Q gi|254780168|r 81 RFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHPDCTQISKINNQ-KPDLLVG-ADGLNSNI 155 (380)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~adlvIg-ADG~~S~v 155 (380)
+...+. ....-....-....+.+...+.|+.... ....+.+.+...+.....+ +++++|+ .-|..|++
T Consensus 77 -y~~~dL--~~~~LVIaATdd~~lN~~I~~~a~~~~i----lvNvvddp~~~~fi~Paiv~Rg~L~IAIST~G~SP~ 146 (222)
T PRK05562 77 -YDKEFI--KDKHLIIIATDDEELNNKIRKHCDRLYK----LYIDCSDFKKGLCVIPYQRSSKNMVFALNTKGGSPK 146 (222)
T ss_pred -CCHHHC--CCCCEEEEECCCHHHHHHHHHHHHHHCC----EEEECCCCCCCCEEECEEEEECCEEEEEECCCCCHH
T ss_conf -797780--8873999947988999999999998099----889857887681797709972897999989998979
No 393
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=86.12 E-value=1.3 Score=22.64 Aligned_cols=32 Identities=16% Similarity=0.308 Sum_probs=26.4
Q ss_pred CEECCHHHHHHHHHHHHHCCC-EEEEEECCCCC
Q ss_conf 387753899999999997798-59999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI-QSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~-~v~i~Er~~~~ 32 (380)
.|||+|-+|.++|..|...++ ++.+||..+..
T Consensus 11 ~IIGaG~VG~~~A~~l~~~~l~eivLiDi~~~~ 43 (322)
T PTZ00082 11 SLIGSGNIGGVMAYLIQLKNLADVVLFDIVPNI 43 (322)
T ss_pred EEECCCHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 998969899999999963899779999788980
No 394
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.05 E-value=1.3 Score=22.68 Aligned_cols=30 Identities=27% Similarity=0.311 Sum_probs=25.8
Q ss_pred CEECCHHHHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf 387753899999999997798-599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI-QSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~-~v~i~Er~~ 30 (380)
+|||+|=-|+.+|.+|++.|+ +.+++|.+.
T Consensus 3 ~IvG~GGLG~~~a~~La~aGvg~i~lvD~D~ 33 (174)
T cd01487 3 GIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9987678899999999981897399998994
No 395
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=85.96 E-value=1.2 Score=23.05 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=25.3
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 387753899999999997798599995
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLE 27 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~E 27 (380)
||||||.++.-=+..|.+.|-+|+|+-
T Consensus 17 LVvGGG~VA~rK~~~Ll~~ga~VtVvs 43 (157)
T PRK06719 17 VIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEC
T ss_conf 998898999999999987879699999
No 396
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=85.92 E-value=1.3 Score=22.74 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=25.5
Q ss_pred CEECCHHHHHHHHHHHHHCCC-EEEEEECC
Q ss_conf 387753899999999997798-59999568
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI-QSCVLEKK 29 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~-~v~i~Er~ 29 (380)
+|||+|=-|...|.+|++.|+ +.+++|.+
T Consensus 31 livG~GGLG~~~a~~La~aGVG~i~lvD~D 60 (209)
T PRK08644 31 GIAGAGGLGSNIAVALARSGVGNLKLVDFD 60 (209)
T ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 998887889999999999389818998899
No 397
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=85.90 E-value=1 Score=23.34 Aligned_cols=30 Identities=27% Similarity=0.476 Sum_probs=27.8
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 877538999999999977985999956876
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
+||-|.=|...|..|.++|++|++++++++
T Consensus 6 fIGlG~MG~~ma~~L~~~G~~v~v~dr~~~ 35 (295)
T PRK11559 6 FIGLGIMGKPMSKNLLKAGYSLVVYDRNPE 35 (295)
T ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 984057699999999978995899929999
No 398
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.81 E-value=1.1 Score=23.14 Aligned_cols=30 Identities=20% Similarity=0.117 Sum_probs=23.4
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 387753899999999997798599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
+|+|.|.+|.++|..|.++|..+++-|+.+
T Consensus 4 ~V~GlG~sG~s~a~~L~~~g~~~i~dD~~~ 33 (401)
T PRK03815 4 SLFGYGKTTKALARFFVKNGGVDIYDDKFT 33 (401)
T ss_pred EEEEECHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 998477718999999994879799989998
No 399
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=85.75 E-value=1.5 Score=22.25 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=26.1
Q ss_pred CEECC-HHHHHHHHHHHHHCCC----EEEEEECCCC
Q ss_conf 38775-3899999999997798----5999956876
Q gi|254780168|r 1 MIIGA-GISGLTLAASLGHRGI----QSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGa-G~aGl~~A~~L~~~G~----~v~i~Er~~~ 31 (380)
.|||| |-.|.++|..|..++. ++.++|..+.
T Consensus 2 ~IIGA~G~VG~~~a~~l~~~~~~~~~el~L~Di~~~ 37 (263)
T cd00650 2 AVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEE 37 (263)
T ss_pred EEECCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCC
T ss_conf 898779779999999998289999988999958987
No 400
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=85.69 E-value=1.4 Score=22.40 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=25.3
Q ss_pred CEECCHHHHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf 387753899999999997798-599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI-QSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~-~v~i~Er~~ 30 (380)
+|||+|=.|..+|..|++.|+ +++|+|.+.
T Consensus 36 livG~GGlG~~~~~~La~aGvg~i~lvD~D~ 66 (245)
T PRK05690 36 LVVGLGGLGCAAAQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 9987777789999999985996599996886
No 401
>pfam03435 Saccharop_dh Saccharopine dehydrogenase. This family comprised of three structural domains that can not be separated in the linear sequence. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase. The saccharopine dehydrogenase can also function as a saccharopine reductase.
Probab=85.64 E-value=1.1 Score=23.08 Aligned_cols=31 Identities=32% Similarity=0.437 Sum_probs=26.9
Q ss_pred CEECCHHHHHHHHHHHHHCCC--EEEEEECCCC
Q ss_conf 387753899999999997798--5999956876
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI--QSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~--~v~i~Er~~~ 31 (380)
||+|+|-.|..++..|++.+. +|+|.+++.+
T Consensus 2 lvlGaG~vG~~~~~~L~~~~~~~~i~vad~~~~ 34 (384)
T pfam03435 2 LIIGAGGVGQGVAPLLARHGDVDEITVADRSLE 34 (384)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEEEECCHH
T ss_conf 898977879999999972899886999989889
No 402
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=85.10 E-value=1.1 Score=23.18 Aligned_cols=31 Identities=29% Similarity=0.512 Sum_probs=28.0
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 8775389999999999779859999568765
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
|+|+|-=|.++|..|++.|++|++.-++++.
T Consensus 6 ViGaGswGTALA~~la~ng~~V~lw~r~~~~ 36 (329)
T COG0240 6 VIGAGSWGTALAKVLARNGHEVRLWGRDEEI 36 (329)
T ss_pred EECCCHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 9817837999999999669846999628999
No 403
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF; InterPro: IPR012731 Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the more widely distributed clade of ThiF proteins as found in E. coli..
Probab=84.88 E-value=1.2 Score=23.00 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=26.5
Q ss_pred CEECCHHHHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf 387753899999999997798-599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI-QSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~-~v~i~Er~~ 30 (380)
||||+|==|+..+.+|+.+|. .++|+|.+.
T Consensus 25 LiiGaGgLGs~~~~~LA~AGVG~i~i~D~D~ 55 (210)
T TIGR02356 25 LIIGAGGLGSPAALYLAAAGVGTITIVDDDH 55 (210)
T ss_pred EEEEECHHHHHHHHHHHHCCCCEEEEEECCE
T ss_conf 9997261456899999828883789985167
No 404
>PRK08328 hypothetical protein; Provisional
Probab=84.85 E-value=1.5 Score=22.35 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=25.7
Q ss_pred CEECCHHHHHHHHHHHHHCCC-EEEEEECC
Q ss_conf 387753899999999997798-59999568
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI-QSCVLEKK 29 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~-~v~i~Er~ 29 (380)
+|||+|=-|..+|..|++.|+ +.+++|.+
T Consensus 31 lvvG~GGlGs~~~~~La~~GvG~i~lvD~D 60 (230)
T PRK08328 31 AVVGVGGLGSPVAYYLAAAGVGTVLLIDEQ 60 (230)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 998878789999999998489868987487
No 405
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=84.85 E-value=1.5 Score=22.30 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=27.0
Q ss_pred CEECCHHHHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf 387753899999999997798-599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI-QSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~-~v~i~Er~~ 30 (380)
+|||.|=.|..+|.+|++.|+ +.+|+|.+.
T Consensus 15 ~v~G~GGvGs~~a~~LarsGVG~l~lvD~D~ 45 (231)
T cd00755 15 AVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEEECCE
T ss_conf 9988863689999999980997599971999
No 406
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=84.83 E-value=1.8 Score=21.76 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=27.1
Q ss_pred CEECC-HHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 38775-389999999999779859999568765
Q gi|254780168|r 1 MIIGA-GISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGa-G~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
||.|| |-.|..++..|.++|++|.++.+.+..
T Consensus 4 LVTGgtGfiG~~l~~~L~~~G~~V~~l~r~~~~ 36 (328)
T TIGR03466 4 LVTGATGFVGSAVVRLLLERGEEVRVLVRPTSD 36 (328)
T ss_pred EEECCCCHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 998677799999999999784989999899986
No 407
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=84.62 E-value=1.7 Score=21.81 Aligned_cols=31 Identities=32% Similarity=0.412 Sum_probs=28.5
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 8775389999999999779859999568765
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
|+|||-=|-++|++.++.|++|.+++.++..
T Consensus 12 IlGgGQLgrMla~aA~~lG~~v~vldp~~~~ 42 (377)
T PRK06019 12 IIGGGQLGRMLALAAAPLGYKVIVLDPDADC 42 (377)
T ss_pred EECCCHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 9878689999999999789989998489849
No 408
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.56 E-value=1.5 Score=22.33 Aligned_cols=30 Identities=23% Similarity=0.546 Sum_probs=23.8
Q ss_pred CEECCHHHHHHHHHHHHHCCC--EEEEEECCC
Q ss_conf 387753899999999997798--599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI--QSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~--~v~i~Er~~ 30 (380)
+|+|.|.+|.++|..|.++|. .|.++|.+.
T Consensus 11 lV~GlG~sG~s~a~~L~~~~~~~~v~~~D~~~ 42 (438)
T PRK04663 11 VVVGLGITGLSVVKHLRKTQPQLTVKVIDTRE 42 (438)
T ss_pred EEEEECHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 99906785899999999669984699963988
No 409
>pfam04321 RmlD_sub_bind RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.
Probab=84.54 E-value=1.6 Score=22.15 Aligned_cols=30 Identities=27% Similarity=0.578 Sum_probs=26.2
Q ss_pred CEEC-CHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 3877-53899999999997798599995687
Q gi|254780168|r 1 MIIG-AGISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvG-aG~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
||.| +|..|..++..|.++|++|+.+.|..
T Consensus 2 LVtG~~GfiGs~l~~~L~~~g~~v~~~~r~~ 32 (284)
T pfam04321 2 LVTGANGQLGRELTRLLAERGVEVVALDRPE 32 (284)
T ss_pred EEECCCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 9964899899999999986899899954862
No 410
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase; InterPro: IPR005762 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD). MurD catalyses the addition of d-glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-l-alanine. ; GO: 0005524 ATP binding, 0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=84.39 E-value=1.1 Score=23.09 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=28.7
Q ss_pred CEECCHHHHH--HHHHHHHHCCCEEEEEECCCCC
Q ss_conf 3877538999--9999999779859999568765
Q gi|254780168|r 1 MIIGAGISGL--TLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl--~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
+|+|-|..|. ++|..|.++|..+++.|.++..
T Consensus 3 ~i~GlG~tG~G~a~a~~L~~~g~~~~~~D~~~~~ 36 (476)
T TIGR01087 3 LILGLGKTGRGVAVARFLKKKGAEVTVTDDDPEE 36 (476)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 8998675107899999999729879999845221
No 411
>KOG2018 consensus
Probab=84.26 E-value=1.3 Score=22.60 Aligned_cols=49 Identities=20% Similarity=0.305 Sum_probs=36.9
Q ss_pred CEECCHHHHHHHHHHHHHCCCE-EEEEECCCCCCCCCCEEEECHHHHHHHHHCCC
Q ss_conf 3877538999999999977985-99995687655577136678889999998899
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQ-SCVLEKKDQLSDSGFGIQISPNASRILKRIGI 54 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~-v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi 54 (380)
||||+|=+|.-.+..|.|.|.+ +.|+|-+.--- -+|..++...|...|.
T Consensus 78 VVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSl-----sSLNrHs~Atl~DVG~ 127 (430)
T KOG2018 78 VVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSL-----SSLNRHSCATLADVGT 127 (430)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEECHHHCCH-----HHHHHHHHHHHHHCCC
T ss_conf 9991685229999999982686389953101457-----5632235246765388
No 412
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=84.22 E-value=1.7 Score=21.82 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=24.9
Q ss_pred CEE-CCHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 387-75389999999999779859999568
Q gi|254780168|r 1 MII-GAGISGLTLAASLGHRGIQSCVLEKK 29 (380)
Q Consensus 1 iIv-GaG~aGl~~A~~L~~~G~~v~i~Er~ 29 (380)
||- |+|-.|..++..|.++|++|+++++-
T Consensus 4 LVTGg~GFIGs~l~~~Ll~~g~~V~~~d~~ 33 (338)
T PRK10675 4 LVTGGSGYIGSHTCVQLLQNGHDVVILDNL 33 (338)
T ss_pred EEECCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 998987679999999999784989999889
No 413
>KOG4716 consensus
Probab=84.07 E-value=0.32 Score=26.89 Aligned_cols=13 Identities=31% Similarity=0.330 Sum_probs=7.7
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 3036799999985
Q gi|254780168|r 298 MAIEDAYALSYLL 310 (380)
Q Consensus 298 ~al~Da~~La~~L 310 (380)
.||+....||+-|
T Consensus 350 vAIqsGrlLa~Rl 362 (503)
T KOG4716 350 VAIQSGRLLARRL 362 (503)
T ss_pred HHHHHCHHHHHHH
T ss_conf 5435356999987
No 414
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=84.02 E-value=1.8 Score=21.65 Aligned_cols=29 Identities=24% Similarity=0.454 Sum_probs=25.5
Q ss_pred CEECCHHHHHHHHHHHHHCCC-EEEEEECC
Q ss_conf 387753899999999997798-59999568
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI-QSCVLEKK 29 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~-~v~i~Er~ 29 (380)
+|||+|=.|..+|..|++.|+ +.+|+|.+
T Consensus 25 livG~GGlGs~~~~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 25 LVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 998877889999999998399758999787
No 415
>pfam05368 NmrA NmrA-like family. NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.
Probab=83.91 E-value=1.9 Score=21.58 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=27.3
Q ss_pred CEECC-HHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 38775-38999999999977985999956876
Q gi|254780168|r 1 MIIGA-GISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGa-G~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
+|.|| |-.|..++..|.++|++|+++-|++.
T Consensus 2 lV~GatG~iG~~vv~~L~~~g~~Vr~l~R~~~ 33 (232)
T pfam05368 2 LVFGATGYQGGSVVRASLKAGHPVRALVRDPK 33 (232)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 99896828999999999858993899971873
No 416
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=83.86 E-value=1.9 Score=21.50 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=26.8
Q ss_pred CEECC-HHHHHHHHHHHHHCCC--EEEEEECCCCC
Q ss_conf 38775-3899999999997798--59999568765
Q gi|254780168|r 1 MIIGA-GISGLTLAASLGHRGI--QSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGa-G~aGl~~A~~L~~~G~--~v~i~Er~~~~ 32 (380)
-|||| |-.|.++|+.|..+++ ++.+||.....
T Consensus 4 ~IiGAaG~VG~~~a~~l~~~~~~~el~LiD~~~~~ 38 (309)
T cd05294 4 SIIGASGRVGSATALLLAKEDVVKEINLISRPKSL 38 (309)
T ss_pred EEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 99999976999999999837998759996055643
No 417
>KOG4405 consensus
Probab=83.66 E-value=1.3 Score=22.60 Aligned_cols=42 Identities=21% Similarity=0.334 Sum_probs=36.6
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEC
Q ss_conf 387753899999999997798599995687655577136678
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQIS 42 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~ 42 (380)
||||-|..-..+|.+.++.|.+|.=+|+++......+..+++
T Consensus 12 VViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms 53 (547)
T KOG4405 12 VVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS 53 (547)
T ss_pred EEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEC
T ss_conf 998179848999998600377058606865557764001410
No 418
>PRK09422 alcohol dehydrogenase; Provisional
Probab=83.50 E-value=1.6 Score=22.14 Aligned_cols=11 Identities=18% Similarity=0.205 Sum_probs=7.3
Q ss_pred CCCEEECHHHC
Q ss_conf 68711211111
Q gi|254780168|r 275 KKNAVLIGDAA 285 (380)
Q Consensus 275 ~~rv~LiGDAA 285 (380)
.|+++++|-..
T Consensus 254 gG~~v~vG~~~ 264 (338)
T PRK09422 254 GGRVVAVGLPP 264 (338)
T ss_pred CCEEEEECCCC
T ss_conf 99999987789
No 419
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=83.45 E-value=1.7 Score=21.92 Aligned_cols=31 Identities=32% Similarity=0.462 Sum_probs=28.4
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 8775389999999999779859999568765
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
.||-|.-|...|..|.++|++|++++|+++.
T Consensus 5 fIGLG~MG~pmA~~L~~aG~~v~v~~r~~~k 35 (286)
T COG2084 5 FIGLGIMGSPMAANLLKAGHEVTVYNRTPEK 35 (286)
T ss_pred EECCCHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 9857352599999999779878998088566
No 420
>KOG2305 consensus
Probab=83.34 E-value=0.88 Score=23.87 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=26.1
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 8775389999999999779859999568
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKK 29 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~ 29 (380)
|||.|.+|..-|..++..|++|.+||=.
T Consensus 8 ivgSgl~g~~WAmlFAs~GyqVqlYDI~ 35 (313)
T KOG2305 8 IVGSGLVGSSWAMLFASSGYQVQLYDIL 35 (313)
T ss_pred EEECCCCCCHHHHHHHCCCCEEEEEECC
T ss_conf 7623231225999986067269976235
No 421
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=83.29 E-value=1.9 Score=21.62 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=12.0
Q ss_pred CCHHHHHHHHHHHHHCCC-EEEEE
Q ss_conf 753899999999997798-59999
Q gi|254780168|r 4 GAGISGLTLAASLGHRGI-QSCVL 26 (380)
Q Consensus 4 GaG~aGl~~A~~L~~~G~-~v~i~ 26 (380)
..|.-...+|..|+++|+ +|.-+
T Consensus 66 ~sG~RS~~Aa~~L~~~Gy~~V~~l 89 (379)
T PRK08762 66 QSGKRSAHAAADLRELGYRRVASV 89 (379)
T ss_pred CCCHHHHHHHHHHHHCCCCCCEEC
T ss_conf 998799999999997699660886
No 422
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=83.16 E-value=2 Score=21.35 Aligned_cols=39 Identities=15% Similarity=0.321 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCC
Q ss_conf 99999999997798599995687655577136678889999998899
Q gi|254780168|r 8 SGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGI 54 (380)
Q Consensus 8 aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi 54 (380)
+|...|+.++++||+|.+-|.+... +++.-++..+..|+
T Consensus 31 GGs~MAiefA~AGHDVvLaePn~~~--------lsee~w~~VEdAgV 69 (341)
T PRK12557 31 GGSRMAIEFAEAGHDVVLAEPNKSM--------LSDEQWKRVEDAGV 69 (341)
T ss_pred CCHHHHHHHHHCCCCEEEECCCCCC--------CCHHHHHHHHHCCC
T ss_conf 7049999999757847973576231--------69899999997496
No 423
>KOG1439 consensus
Probab=83.08 E-value=0.46 Score=25.79 Aligned_cols=40 Identities=15% Similarity=0.400 Sum_probs=35.1
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEE
Q ss_conf 3877538999999999977985999956876555771366
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQ 40 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~ 40 (380)
||.|-|+.-+.++..|+.+|-+|..+||++......+++.
T Consensus 8 ivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~saslt 47 (440)
T KOG1439 8 IVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLT 47 (440)
T ss_pred EEECCCCHHHEEEEEEEECCCEEEEEECCCCCCCCCCCEE
T ss_conf 9973773641000002576958999707887776444434
No 424
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit; InterPro: IPR005884 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumaratereductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein . The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species . The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. ; GO: 0016491 oxidoreductase activity, 0006118 electron transport, 0009061 anaerobic respiration.
Probab=82.76 E-value=1.4 Score=22.41 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=25.8
Q ss_pred CEECCHHHHHHHHHHHHHCC--CEEEEEECC
Q ss_conf 38775389999999999779--859999568
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRG--IQSCVLEKK 29 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G--~~v~i~Er~ 29 (380)
+|||||=|||=+|++.++.+ .+|.|+-|-
T Consensus 7 ~viGaGGAGLRaAIA~A~aNP~l~vAliSKV 37 (585)
T TIGR01176 7 AVIGAGGAGLRAAIAAAEANPHLDVALISKV 37 (585)
T ss_pred EEECCCCHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 7883784468999999840898537898511
No 425
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=82.71 E-value=2 Score=21.35 Aligned_cols=30 Identities=27% Similarity=0.331 Sum_probs=25.6
Q ss_pred CEECCHHHHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf 387753899999999997798-599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI-QSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~-~v~i~Er~~ 30 (380)
+|||+|=-|+.+|.+|+.+|+ +.+|+|.+.
T Consensus 46 lvvG~GGLG~~~~~yLaaaGvG~i~ivD~D~ 76 (392)
T PRK07878 46 LVIGAGGLGSPTLLYLAAAGVGTIGIVEFDV 76 (392)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9987875789999999982897599987899
No 426
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=82.41 E-value=1.1 Score=23.13 Aligned_cols=15 Identities=20% Similarity=0.116 Sum_probs=9.9
Q ss_pred HHHHHCCCEEEEEEC
Q ss_conf 999977985999956
Q gi|254780168|r 14 ASLGHRGIQSCVLEK 28 (380)
Q Consensus 14 ~~L~~~G~~v~i~Er 28 (380)
..|.++||+|.|=+.
T Consensus 24 ~~l~~~GheVlVe~g 38 (371)
T COG0686 24 RELVNHGHEVLVETG 38 (371)
T ss_pred HHHHHCCCEEEEECC
T ss_conf 999737958999658
No 427
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=82.27 E-value=1.9 Score=21.60 Aligned_cols=11 Identities=36% Similarity=0.540 Sum_probs=7.5
Q ss_pred CCCEEECHHHC
Q ss_conf 68711211111
Q gi|254780168|r 275 KKNAVLIGDAA 285 (380)
Q Consensus 275 ~~rv~LiGDAA 285 (380)
.|+++++|...
T Consensus 248 ~G~iv~~G~~~ 258 (332)
T PRK13771 248 GGKIVLIGNVD 258 (332)
T ss_pred CCEEEEEECCC
T ss_conf 96999993457
No 428
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=82.22 E-value=2.4 Score=20.88 Aligned_cols=30 Identities=27% Similarity=0.424 Sum_probs=25.9
Q ss_pred CEECCHHHHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf 387753899999999997798-599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI-QSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~-~v~i~Er~~ 30 (380)
+|||+|-.|..+|..|+..|+ +++++|.+.
T Consensus 25 lvvG~GGLG~~v~~~La~aGvg~i~ivD~d~ 55 (197)
T cd01492 25 LLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9988788999999999983798699998991
No 429
>PRK07411 hypothetical protein; Validated
Probab=81.77 E-value=2.3 Score=21.00 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=25.7
Q ss_pred CEECCHHHHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf 387753899999999997798-599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI-QSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~-~v~i~Er~~ 30 (380)
+|||+|=-|+.+|.+|+.+|+ +.+|+|.+.
T Consensus 42 lvvG~GGLG~p~~~yLaaaGvG~i~ivD~D~ 72 (390)
T PRK07411 42 LCIGTGGLGSPLLLYLAAAGIGRIGIVDFDI 72 (390)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 9988872379999999983897599974899
No 430
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=81.70 E-value=2.5 Score=20.73 Aligned_cols=30 Identities=27% Similarity=0.485 Sum_probs=25.9
Q ss_pred CEECCHHHHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf 387753899999999997798-599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI-QSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~-~v~i~Er~~ 30 (380)
+|||+|=-|+.+|.+|+.+|+ ++.|+|.+.
T Consensus 45 lvvG~GGLG~p~~~yLaaaGvG~i~ivD~D~ 75 (370)
T PRK05600 45 LVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 9988875789999999982897489873898
No 431
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase; InterPro: IPR004572 Protoporphyrinogen oxidase (1.3.3.4 from EC) oxidizes protoporphyrinogen IX to protoporphyrin IX, a precursor of heme and chlorophyll, in the penultimate step in heme and porphyrin biosynthesis. Bacillus subtilis HemY also has coproporphyrinogen III to coproporphyrin III oxidase activity in a heterologous expression system, although the role for this activity in vivo is unclear. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.; GO: 0004729 protoporphyrinogen oxidase activity, 0006118 electron transport, 0006779 porphyrin biosynthetic process.
Probab=81.66 E-value=1.9 Score=21.49 Aligned_cols=32 Identities=34% Similarity=0.664 Sum_probs=28.0
Q ss_pred CEECCHHHHHHHHHHHHHC------CCEEEEEECCCCC
Q ss_conf 3877538999999999977------9859999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHR------GIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~------G~~v~i~Er~~~~ 32 (380)
+|+|+|+.|++.+..|.+. +.+++++|..+..
T Consensus 6 ~~~ggg~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (556)
T TIGR00562 6 VVVGGGISGLCAAYFLSKERPDKNLGVELTLFEADDRV 43 (556)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
T ss_conf 88617613578888876522212477305887246655
No 432
>PRK08223 hypothetical protein; Validated
Probab=81.57 E-value=2.4 Score=20.88 Aligned_cols=29 Identities=24% Similarity=0.239 Sum_probs=23.5
Q ss_pred CEECCHHHHHHHHHHHHHCCC-EEEEEECC
Q ss_conf 387753899999999997798-59999568
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI-QSCVLEKK 29 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~-~v~i~Er~ 29 (380)
+|||+|=.|..+|..|++.|+ .+.|+|.+
T Consensus 31 lVvG~GGlGs~~a~~LAraGVG~i~lvD~D 60 (287)
T PRK08223 31 AIAGLGGVGGVHLLTLARLGIGKFNIADFD 60 (287)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 999367557999999998289759997499
No 433
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=81.47 E-value=2 Score=21.43 Aligned_cols=10 Identities=40% Similarity=0.777 Sum_probs=3.8
Q ss_pred EEECCCCCCC
Q ss_conf 9743676631
Q gi|254780168|r 146 VGADGLNSNI 155 (380)
Q Consensus 146 IgADG~~S~v 155 (380)
.|.-|.=|+|
T Consensus 164 MGe~G~lSRi 173 (477)
T PRK09310 164 MGNHGIPSRI 173 (477)
T ss_pred CCCCCEEEEE
T ss_conf 1778702100
No 434
>PRK06849 hypothetical protein; Provisional
Probab=81.14 E-value=3 Score=20.25 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=25.6
Q ss_pred CEECC-HHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 38775-38999999999977985999956876
Q gi|254780168|r 1 MIIGA-GISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGa-G~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
||-|| =|.+|.+|..|+++|++|.+.|..+.
T Consensus 8 LiTg~r~~~aL~laR~l~~~Gh~V~~aD~~~~ 39 (387)
T PRK06849 8 LITGARAPAALQLARSFHNAGHTVILADSLKY 39 (387)
T ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 99588607899999999878997999848987
No 435
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=80.93 E-value=2.8 Score=20.38 Aligned_cols=31 Identities=29% Similarity=0.458 Sum_probs=28.5
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 8775389999999999779859999568765
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
|+|||-=|-++|++-++.|++|.|+|.+++.
T Consensus 6 IlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~ 36 (375)
T COG0026 6 ILGGGQLGRMMALAAARLGIKVIVLDPDADA 36 (375)
T ss_pred EECCCHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 9768699999999998649779995699999
No 436
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=80.57 E-value=3 Score=20.23 Aligned_cols=30 Identities=23% Similarity=0.352 Sum_probs=25.5
Q ss_pred CEECCHHHHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf 387753899999999997798-599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI-QSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~-~v~i~Er~~ 30 (380)
+|||+|=-|+.+|.+|+.+|+ +++|+|.+.
T Consensus 32 lvvG~GGLG~~~~~yLa~aGvG~i~i~D~D~ 62 (355)
T PRK05597 32 SVIGAGGLGSPALLYLAGAGVGHITIIDDDV 62 (355)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 9987776689999999984997599972999
No 437
>pfam00670 AdoHcyase_NAD S-adenosyl-L-homocysteine hydrolase, NAD binding domain.
Probab=80.56 E-value=1.5 Score=22.25 Aligned_cols=30 Identities=33% Similarity=0.338 Sum_probs=26.9
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 387753899999999997798599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
+|+|=|..|--.|..|+..|-+|+|.|-+|
T Consensus 27 vV~GYG~~GkGvA~~~rg~Ga~V~V~EvDP 56 (162)
T pfam00670 27 VVCGYGDVGKGCAASLKGQGARVIVTEIDP 56 (162)
T ss_pred EEECCCCCCHHHHHHHHCCCCEEEEEECCC
T ss_conf 996787667779998622999899994793
No 438
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=80.43 E-value=2.8 Score=20.40 Aligned_cols=30 Identities=20% Similarity=0.464 Sum_probs=25.9
Q ss_pred CEECCHHHHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf 387753899999999997798-599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI-QSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~-~v~i~Er~~ 30 (380)
+|||+|=.|..+|..|++.|+ +++++|.+.
T Consensus 3 livG~GglG~~va~~L~~~Gv~~i~ivD~D~ 33 (143)
T cd01483 3 LLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 9999798999999999993797199997898
No 439
>PRK07102 short chain dehydrogenase; Provisional
Probab=80.28 E-value=2.5 Score=20.74 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=24.5
Q ss_pred CEECCHH-HHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 3877538-999999999977985999956876
Q gi|254780168|r 1 MIIGAGI-SGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~-aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
||.||+= .|..+|..|+++|.+|.+..|+.+
T Consensus 5 lITGassGIG~a~A~~la~~G~~v~l~~R~~~ 36 (243)
T PRK07102 5 LIIGATSDIARACARRYAAAGARLYLAARDTE 36 (243)
T ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 99157459999999999987998999989889
No 440
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=80.12 E-value=2.8 Score=20.37 Aligned_cols=29 Identities=31% Similarity=0.488 Sum_probs=25.1
Q ss_pred CEECCHHHHHHHHHHHHHCCC-EEEEEECC
Q ss_conf 387753899999999997798-59999568
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI-QSCVLEKK 29 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~-~v~i~Er~ 29 (380)
+|||+|=-|+-++..|+..|+ +++|+|.+
T Consensus 3 lvvGaGglGce~~k~La~~Gvg~i~iiD~D 32 (234)
T cd01484 3 LLVGAGGIGCELLKNLALMGFGQIHVIDMD 32 (234)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 999488879999999998399869997599
No 441
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.78 E-value=3 Score=20.24 Aligned_cols=26 Identities=15% Similarity=0.052 Sum_probs=22.6
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 38775389999999999779859999
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVL 26 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~ 26 (380)
+|+|.|.+|.++|..|.++|..+.|.
T Consensus 12 ~V~GlG~sG~aaa~~L~~~g~~~~v~ 37 (468)
T PRK04690 12 ALWGWGREGRAAYRALRAQLPAQPLT 37 (468)
T ss_pred EEEEECHHHHHHHHHHHHCCCEEEEE
T ss_conf 99834787999999999669904999
No 442
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=79.76 E-value=2.3 Score=20.97 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=25.6
Q ss_pred CEECCHHHHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf 387753899999999997798-599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI-QSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~-~v~i~Er~~ 30 (380)
+|+|+|=++-+.+..|.+.|. ++.|+.|+.
T Consensus 23 lIlGaGGaarai~~aL~~~g~~~I~i~nR~~ 53 (155)
T cd01065 23 LILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEEECCH
T ss_conf 9986758999999999971998228860899
No 443
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.49 E-value=2.7 Score=20.46 Aligned_cols=28 Identities=14% Similarity=0.167 Sum_probs=22.0
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 3877538999999999977985999956
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEK 28 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er 28 (380)
+|+|.|.+|.++|..|++.+..+.+-|.
T Consensus 10 ~V~GlG~sG~a~~~~L~~~~~~~~~dd~ 37 (450)
T PRK01368 10 GVFGLGKTGISVYEELQNKYDLIVYDDL 37 (450)
T ss_pred EEEEECHHHHHHHHHHHHCCCEEEEECC
T ss_conf 9995878799999999719998999899
No 444
>PRK08862 short chain dehydrogenase; Provisional
Probab=79.48 E-value=2.4 Score=20.87 Aligned_cols=31 Identities=19% Similarity=0.402 Sum_probs=24.6
Q ss_pred CEECCH-HHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 387753-8999999999977985999956876
Q gi|254780168|r 1 MIIGAG-ISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG-~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
||-||+ =.|..+|..|+++|.+|.+.+++++
T Consensus 9 lITGas~GIG~aiA~~~A~~Ga~Vii~~r~~~ 40 (227)
T PRK08862 9 LITSAGSVLGRTISCHFARLGATLILCDQDQS 40 (227)
T ss_pred EEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 99798879999999999987999999969999
No 445
>PRK07832 short chain dehydrogenase; Provisional
Probab=79.21 E-value=2.8 Score=20.38 Aligned_cols=30 Identities=20% Similarity=0.341 Sum_probs=23.8
Q ss_pred CEECCHH-HHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 3877538-99999999997798599995687
Q gi|254780168|r 1 MIIGAGI-SGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~-aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
||-||+= .|..+|..|+++|.+|.+.+++.
T Consensus 4 lITGassGIG~a~A~~la~~Ga~v~l~~r~~ 34 (272)
T PRK07832 4 FVTGAASGIGRATALRLAAQGAELFLTDRDA 34 (272)
T ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 9947201999999999998899899998988
No 446
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=79.15 E-value=3.3 Score=19.95 Aligned_cols=29 Identities=24% Similarity=0.412 Sum_probs=25.1
Q ss_pred CEECCHHHHHHHHHHHHHCCCE-EEEEECC
Q ss_conf 3877538999999999977985-9999568
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQ-SCVLEKK 29 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~-v~i~Er~ 29 (380)
+|||+|-.|+-++..|+..|+. ++|+|.+
T Consensus 3 lvvGaGglG~e~lk~La~~Gvg~i~ivD~D 32 (312)
T cd01489 3 LVVGAGGIGCELLKNLVLTGFGEIHIIDLD 32 (312)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 998888889999999998289859997199
No 447
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=79.11 E-value=3.6 Score=19.68 Aligned_cols=30 Identities=33% Similarity=0.535 Sum_probs=25.4
Q ss_pred CEECCHHHHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf 387753899999999997798-599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI-QSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~-~v~i~Er~~ 30 (380)
+|||+|=-|+..|..|+..|+ +++|+|.+.
T Consensus 23 lVvG~GGLG~~v~~~La~aGVg~i~ivD~D~ 53 (198)
T cd01485 23 LIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 9987788999999999974998699995996
No 448
>PRK08643 acetoin reductase; Validated
Probab=78.41 E-value=2.7 Score=20.51 Aligned_cols=31 Identities=16% Similarity=0.420 Sum_probs=24.3
Q ss_pred CEEC-CHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 3877-538999999999977985999956876
Q gi|254780168|r 1 MIIG-AGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvG-aG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
||.| ++=.|..+|..|+++|.+|.+.+++.+
T Consensus 6 lVTGg~~GIG~aia~~la~~Ga~V~i~d~~~~ 37 (256)
T PRK08643 6 LVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEE 37 (256)
T ss_pred EEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 99575788999999999987999999969889
No 449
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=78.28 E-value=0.62 Score=24.92 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=25.8
Q ss_pred EECCHHHHHHHHHHHHHC----CCEEEEEECCCCC
Q ss_conf 877538999999999977----9859999568765
Q gi|254780168|r 2 IIGAGISGLTLAASLGHR----GIQSCVLEKKDQL 32 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~----G~~v~i~Er~~~~ 32 (380)
|||+|+|||++|..|-|- |-++.|+|--+-.
T Consensus 27 ~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~ 61 (587)
T COG4716 27 IVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLA 61 (587)
T ss_pred EECCCHHHHHHEEEEEECCCCCCCEEEEEECCCCC
T ss_conf 97544674442347885266577456763027555
No 450
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=78.27 E-value=2.8 Score=20.36 Aligned_cols=12 Identities=25% Similarity=0.578 Sum_probs=6.3
Q ss_pred EEEEECCCCCCC
Q ss_conf 899743676631
Q gi|254780168|r 144 LLVGADGLNSNI 155 (380)
Q Consensus 144 lvIgADG~~S~v 155 (380)
+++||-|+-..+
T Consensus 131 lilGaGGaa~ai 142 (284)
T PRK12549 131 VQLGAGGAGAAV 142 (284)
T ss_pred EEECCCCHHHHH
T ss_conf 996566168999
No 451
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=78.12 E-value=3.9 Score=19.45 Aligned_cols=12 Identities=0% Similarity=0.105 Sum_probs=4.0
Q ss_pred CEEEEEEECCCC
Q ss_conf 057888404897
Q gi|254780168|r 198 SHLVTYPLREDN 209 (380)
Q Consensus 198 ~~~~~~p~~~~~ 209 (380)
-+|.++-+.++.
T Consensus 24 p~F~Ivd~e~g~ 35 (121)
T COG1433 24 PYFTIVDVEDGE 35 (121)
T ss_pred CEEEEEEECCCC
T ss_conf 659999816996
No 452
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB; InterPro: IPR012730 This entry describes the molybdopterin biosynthesis protein MoeB in Escherichia coli and related species. MoeB and MoaD are involved in molybdenum cofactor biosynthesis, an evolutionarily conserved pathway. The MoeB enzyme covalently modifies the molybdopterin synthase MoaD by sulphurylation. The crystal structure of the complex between the E. coli MoeB and MoaD proteins reveals a MoeB(2)-MoaD(2) heterotetramer in which the MoeB subunits form a mainly hydrophobic dimer . MoeB is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (IPR000594 from INTERPRO). ; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=78.00 E-value=2.4 Score=20.83 Aligned_cols=29 Identities=21% Similarity=0.392 Sum_probs=25.6
Q ss_pred CEECCHHHHHHHHHHHHHCCC-EEEEEECC
Q ss_conf 387753899999999997798-59999568
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI-QSCVLEKK 29 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~-~v~i~Er~ 29 (380)
||||.|=-|++++.+|+.+|+ +.+++|-+
T Consensus 28 LivG~GGLGCAa~QYLa~AGvG~l~L~DfD 57 (240)
T TIGR02355 28 LIVGLGGLGCAASQYLAAAGVGRLTLVDFD 57 (240)
T ss_pred EEEECCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 778367034567888864366327886337
No 453
>PRK05650 short chain dehydrogenase; Provisional
Probab=77.90 E-value=3.1 Score=20.11 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=23.6
Q ss_pred CEECCH-HHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 387753-899999999997798599995687
Q gi|254780168|r 1 MIIGAG-ISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG-~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
||-||+ =.|..+|..|+++|.+|.+.+++.
T Consensus 4 lITGassGIG~alA~~la~~G~~V~l~~r~~ 34 (270)
T PRK05650 4 MITGAASGLGRAIALRWAREGWRLALADVNE 34 (270)
T ss_pred EEECCCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 9988764999999999998899899997988
No 454
>PRK07831 short chain dehydrogenase; Provisional
Probab=77.87 E-value=3.1 Score=20.07 Aligned_cols=31 Identities=13% Similarity=0.193 Sum_probs=25.2
Q ss_pred CEECCH-H-HHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 387753-8-999999999977985999956876
Q gi|254780168|r 1 MIIGAG-I-SGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG-~-aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
||.||+ - .|..+|..|++.|.+|.+.+++.+
T Consensus 20 lVTGgsg~GIG~a~a~~la~~Ga~V~i~d~~~~ 52 (261)
T PRK07831 20 VVTAAAGTGIGSATARRALEEGADVVISDIHER 52 (261)
T ss_pred EEECCCCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 994999647899999999987998999808777
No 455
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=77.50 E-value=3.8 Score=19.47 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=24.8
Q ss_pred CEECCHHHHHHHHHHHHHCC--------CEEEEEECCCC
Q ss_conf 38775389999999999779--------85999956876
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRG--------IQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G--------~~v~i~Er~~~ 31 (380)
-|+|||-=|.++|..|++.| ++|.+.-++++
T Consensus 3 ~ViGaGawGTALA~~La~ng~~~~~~~~~~V~lw~r~~~ 41 (342)
T TIGR03376 3 AVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEE 41 (342)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECHH
T ss_conf 998779999999999997488654557863799972322
No 456
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.41 E-value=2.9 Score=20.35 Aligned_cols=31 Identities=29% Similarity=0.548 Sum_probs=24.5
Q ss_pred CEECCH-HHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 387753-8999999999977985999956876
Q gi|254780168|r 1 MIIGAG-ISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG-~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
||-||+ =.|..+|..|+++|.+|.++.|+.+
T Consensus 10 lITGas~GIG~aiA~~la~~Ga~V~l~~r~~~ 41 (238)
T PRK07666 10 LITGAGRGIGRAVAIALAKEGVNVGLLARSEE 41 (238)
T ss_pred EEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 99163778999999999987998999989999
No 457
>KOG3851 consensus
Probab=77.39 E-value=1.9 Score=21.60 Aligned_cols=31 Identities=23% Similarity=0.528 Sum_probs=25.1
Q ss_pred CEECCHHHHHHHHHHHHHC-C-CEEEEEECCCC
Q ss_conf 3877538999999999977-9-85999956876
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHR-G-IQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~-G-~~v~i~Er~~~ 31 (380)
||||||-+|+..|.-+.++ | =+|-|+|....
T Consensus 43 LVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851 43 LVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred EEECCCCCHHHHHHHHHHHCCCCCEEEECCHHH
T ss_conf 998678630578999986568985577552153
No 458
>pfam03807 F420_oxidored NADP oxidoreductase coenzyme F420-dependent.
Probab=77.28 E-value=3.7 Score=19.61 Aligned_cols=28 Identities=36% Similarity=0.509 Sum_probs=23.7
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEE-ECC
Q ss_conf 8775389999999999779859999-568
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVL-EKK 29 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~-Er~ 29 (380)
|||+|--|.+++..|.++|+++.+. +|+
T Consensus 4 ~IG~G~mg~ai~~~l~~~g~~~~~~~~r~ 32 (93)
T pfam03807 4 IIGAGNMGEALARGLAAAGHEVIIANSRN 32 (93)
T ss_pred EECCHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 99700999999999997799612786487
No 459
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=77.28 E-value=2.5 Score=20.79 Aligned_cols=29 Identities=24% Similarity=0.463 Sum_probs=26.3
Q ss_pred CEECCHHHHHHHHHHHHHCCC-EEEEEECC
Q ss_conf 387753899999999997798-59999568
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI-QSCVLEKK 29 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~-~v~i~Er~ 29 (380)
||+|||--|+..|..|...|+ +++++|..
T Consensus 3 LllGaGtLGc~var~L~~~GV~~it~VD~~ 32 (307)
T cd01486 3 LLLGAGTLGCNVARNLLGWGVRHITFVDSG 32 (307)
T ss_pred EEECCCCCCHHHHHHHHHHCCCEEEEEECC
T ss_conf 998577520699999998369858998499
No 460
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase; InterPro: IPR006324 These sequences represent glutathione reductases of plants and some bacteria, including cyanobacteria.; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=77.18 E-value=4.7 Score=18.85 Aligned_cols=134 Identities=15% Similarity=0.214 Sum_probs=74.6
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCC--CC-C-CCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCC
Q ss_conf 8775389999999999779859999568765--55-7-713667888999999889947898626884306999788544
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL--SD-S-GFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLK 77 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~--~~-~-g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~ 77 (380)
|||||=+|+.+|..-|..|-+|-|-|-.-.| ++ . |.|=+ .+ =+|.-|+++..|-..-..
T Consensus 7 VIGAGSGGvrAar~AA~~GaKVAiAE~~~hPisseeiGGvGGT----------------CV-iRGCVPKKl~VYaS~f~~ 69 (478)
T TIGR01424 7 VIGAGSGGVRAARLAAALGAKVAIAEEYRHPISSEEIGGVGGT----------------CV-IRGCVPKKLMVYASEFAE 69 (478)
T ss_pred EEECCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCE----------------EE-EECCCCCEEEEECCCCHH
T ss_conf 8706716689999998729908982156787351223774674----------------78-824407503572122302
Q ss_pred CCCCCCCCCCCCCCCCCEEEE-EECCHH----------------HHHHHHHHHHCCCEEEEEEECCCCCCCCCCC-----
Q ss_conf 333455432344447824786-200013----------------4788997320687256421012344321123-----
Q gi|254780168|r 78 ELSRFSCKNYSRNNWGGIYGV-VKRHTL----------------QKILLNHIQTQPLARLHLSTHITHPDCTQIS----- 135 (380)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~-i~r~~l----------------~~~L~~~~~~~~~~~~~~~~~v~~~~~~~~~----- 135 (380)
.+. +. ..|| |. +...+| .++-+..+++-+..-++-..++.+...+++.
T Consensus 70 ~le--dA-----~gYG---W~i~e~~~f~W~~l~~~k~~Ei~RL~~lY~~~L~~AGv~Ll~GrA~~vd~~tVev~~~dGs 139 (478)
T TIGR01424 70 ELE--DA-----KGYG---WTIVEKARFDWKKLLAKKDKEIARLSGLYKKLLAKAGVELLEGRAELVDPNTVEVLEKDGS 139 (478)
T ss_pred HHH--HH-----HCCC---CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCEEEECCCEEEEEEECCC
T ss_conf 335--55-----2488---4687211157789876577888866688899888533044304337836815797410378
Q ss_pred -CCC--CEEEEEEEEECCCCCCCHHHCCCC
Q ss_conf -453--103568997436766312112853
Q gi|254780168|r 136 -KIN--NQKPDLLVGADGLNSNIRHYIDTQ 162 (380)
Q Consensus 136 -~~~--~~~adlvIgADG~~S~vR~~l~~~ 162 (380)
++. +++|+=++-|=|.+..+|..|+..
T Consensus 140 ddg~ki~yTA~kIliA~Ggrps~kP~lPG~ 169 (478)
T TIGR01424 140 DDGKKITYTAKKILIAVGGRPSVKPELPGH 169 (478)
T ss_pred CCCCEEEEEEEEEEEEECCCCCCCCCCCCC
T ss_conf 788316787759999877878788885685
No 461
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=77.17 E-value=3.1 Score=20.09 Aligned_cols=31 Identities=19% Similarity=0.395 Sum_probs=24.7
Q ss_pred CEECC-HHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 38775-38999999999977985999956876
Q gi|254780168|r 1 MIIGA-GISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGa-G~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
||.|| +=.|..+|..|+++|.+|.++++++.
T Consensus 9 lITGgs~GIG~a~a~~la~~G~~V~~~~r~~~ 40 (246)
T PRK05653 9 LVTGASRGIGRAIALRLAADGARVVIYDSNEE 40 (246)
T ss_pred EEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 99389758999999999987999999979999
No 462
>PRK12862 malic enzyme; Reviewed
Probab=77.13 E-value=3.8 Score=19.46 Aligned_cols=32 Identities=25% Similarity=0.292 Sum_probs=27.7
Q ss_pred CEECCHHHHHHHHHHHHHCCCE---EEEEECCCCC
Q ss_conf 3877538999999999977985---9999568765
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQ---SCVLEKKDQL 32 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~---v~i~Er~~~~ 32 (380)
+|.|||-+|.+++..|...|.+ ++++|+..-+
T Consensus 196 v~~GaGaa~~a~~~ll~~~G~~~~ni~~~D~~Gvi 230 (761)
T PRK12862 196 VASGAGAAALACLDLLVSLGVKRENIWVTDIKGVV 230 (761)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCC
T ss_conf 99788788999999999839981017999467877
No 463
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=77.09 E-value=3.1 Score=20.12 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=24.6
Q ss_pred CEECC-HHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 38775-38999999999977985999956876
Q gi|254780168|r 1 MIIGA-GISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGa-G~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
||.|| +=.|..+|..|+++|.+|.+++|+++
T Consensus 10 lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~ 41 (263)
T PRK06200 10 LITGGGSGIGRALVERFLAEGARVAVLERSAE 41 (263)
T ss_pred EEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 99586679999999999987999999979999
No 464
>KOG1371 consensus
Probab=76.91 E-value=1.9 Score=21.53 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=24.2
Q ss_pred ECCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 77538999999999977985999956
Q gi|254780168|r 3 IGAGISGLTLAASLGHRGIQSCVLEK 28 (380)
Q Consensus 3 vGaG~aGl~~A~~L~~~G~~v~i~Er 28 (380)
=|||-.|.-+++.|.++|+.|+++|-
T Consensus 9 GgaGyiGsht~l~L~~~gy~v~~vDN 34 (343)
T KOG1371 9 GGAGYIGSHTVLALLKRGYGVVIVDN 34 (343)
T ss_pred CCCCCEEHHHHHHHHHCCCCEEEEEC
T ss_conf 68763105999999867981799824
No 465
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=76.73 E-value=2.7 Score=20.48 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=9.0
Q ss_pred EEEEEECCCCCCCHH
Q ss_conf 689974367663121
Q gi|254780168|r 143 DLLVGADGLNSNIRH 157 (380)
Q Consensus 143 dlvIgADG~~S~vR~ 157 (380)
=+|+||-|+-..+--
T Consensus 125 vlIlGaGGaarai~~ 139 (275)
T PRK00258 125 ILLLGAGGAARAVIL 139 (275)
T ss_pred EEEECCCCHHHHHHH
T ss_conf 999888710799999
No 466
>PRK05086 malate dehydrogenase; Provisional
Probab=76.60 E-value=3.8 Score=19.51 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=23.8
Q ss_pred CEECC-HHHHHHHHHHHHHC-CC--EEEEEECCC
Q ss_conf 38775-38999999999977-98--599995687
Q gi|254780168|r 1 MIIGA-GISGLTLAASLGHR-GI--QSCVLEKKD 30 (380)
Q Consensus 1 iIvGa-G~aGl~~A~~L~~~-G~--~v~i~Er~~ 30 (380)
.|||| |-+|.++|+.|+.+ .. ++.++|-.+
T Consensus 4 ~IiGA~G~VG~s~A~~l~~~~~~~~el~L~Di~~ 37 (312)
T PRK05086 4 AVLGAAGGIGQALALLLKTQLPAGSELSLYDIAP 37 (312)
T ss_pred EEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 9998998699999999982898777499975888
No 467
>PRK07454 short chain dehydrogenase; Provisional
Probab=76.48 E-value=3 Score=20.19 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=24.2
Q ss_pred CEECCH-HHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 387753-8999999999977985999956876
Q gi|254780168|r 1 MIIGAG-ISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG-~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
||-||+ =.|..+|..|+++|.+|.+..|+.+
T Consensus 10 lITGas~GIG~a~A~~la~~G~~V~l~~R~~~ 41 (241)
T PRK07454 10 LITGASRGIGKATALAFAKAGWDLALVARSQD 41 (241)
T ss_pred EECCCCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 99175878999999999987998999989999
No 468
>PRK07232 malic enzyme; Reviewed
Probab=76.47 E-value=4.1 Score=19.24 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=27.1
Q ss_pred CEECCHHHHHHHHHHHHHCCCE---EEEEECCCC
Q ss_conf 3877538999999999977985---999956876
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQ---SCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~---v~i~Er~~~ 31 (380)
+|.|||-+|.+++..|...|.+ +.++|+..-
T Consensus 190 v~~GaGaa~~a~~~ll~~~G~~~~ni~~~d~~Gv 223 (753)
T PRK07232 190 VVSGAGAAAIACLNLLVALGAKKENIIVCDSKGV 223 (753)
T ss_pred EEECCCHHHHHHHHHHHHCCCCHHCEEEEECCCC
T ss_conf 9978868889999999984998010799957786
No 469
>PRK07326 short chain dehydrogenase; Provisional
Probab=76.36 E-value=3.4 Score=19.83 Aligned_cols=31 Identities=16% Similarity=0.443 Sum_probs=24.3
Q ss_pred CEECCHH-HHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 3877538-999999999977985999956876
Q gi|254780168|r 1 MIIGAGI-SGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~-aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
||-||+= .|..+|..|+++|.+|.+..|+.+
T Consensus 9 lITGas~GIG~aiA~~la~~Ga~V~i~~r~~~ 40 (235)
T PRK07326 9 LVTGGSKGIGFAVAEALAAAGYRVAICARDES 40 (235)
T ss_pred EEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 99382679999999999987999999989889
No 470
>PRK08267 short chain dehydrogenase; Provisional
Probab=76.25 E-value=3.2 Score=19.97 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=23.5
Q ss_pred CEECCH-HHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 387753-899999999997798599995687
Q gi|254780168|r 1 MIIGAG-ISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG-~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
||-||+ =.|..+|..|+++|.+|.+.++++
T Consensus 5 lITGassGIG~a~A~~~a~~G~~V~~~~r~~ 35 (258)
T PRK08267 5 FITGAASGIGRATARLFAARGWRVGAYDINE 35 (258)
T ss_pred EEECCCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 9907226899999999998799999998889
No 471
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.21 E-value=3.4 Score=19.80 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=24.6
Q ss_pred CEECC-HHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 38775-38999999999977985999956876
Q gi|254780168|r 1 MIIGA-GISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGa-G~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
||.|| +=.|..+|..|+++|.+|.+..|+++
T Consensus 9 lVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~ 40 (238)
T PRK05786 9 LIVGVSPGLGYAVAYFALREGASVYAFARSEE 40 (238)
T ss_pred EEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 99289878999999999987999999969889
No 472
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=76.16 E-value=3.5 Score=19.73 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 75389999999999779859999568
Q gi|254780168|r 4 GAGISGLTLAASLGHRGIQSCVLEKK 29 (380)
Q Consensus 4 GaG~aGl~~A~~L~~~G~~v~i~Er~ 29 (380)
|||-.|+-++..|.++|++|.|+|--
T Consensus 8 GAGYIGSHtv~~Ll~~G~~vvV~DNL 33 (329)
T COG1087 8 GAGYIGSHTVRQLLKTGHEVVVLDNL 33 (329)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 86546899999999789848999568
No 473
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.99 E-value=4.4 Score=19.05 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=24.9
Q ss_pred CEECCHH-HHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 3877538-99999999997798599995687
Q gi|254780168|r 1 MIIGAGI-SGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~-aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
||.||+= .|..+|..|++.|.+|.+..++.
T Consensus 11 lITGas~GIG~aia~~la~~G~~V~~~~~~~ 41 (250)
T PRK12825 11 LVTGAARGIGRAIALRLAAAGADVIVHPPSD 41 (250)
T ss_pred EEECCCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9938955899999999998799899997988
No 474
>TIGR01035 hemA glutamyl-tRNA reductase; InterPro: IPR000343 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamyl-tRNA reductase (1.2.1.70 from EC), which reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme required NADPH as a coenzyme.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process.
Probab=75.84 E-value=3.9 Score=19.40 Aligned_cols=10 Identities=30% Similarity=0.205 Sum_probs=5.3
Q ss_pred CCCEEEEEEC
Q ss_conf 7985999956
Q gi|254780168|r 19 RGIQSCVLEK 28 (380)
Q Consensus 19 ~G~~v~i~Er 28 (380)
+-.+|.+.||
T Consensus 9 K~apVe~rEK 18 (436)
T TIGR01035 9 KSAPVEVREK 18 (436)
T ss_pred EECCEEEEEE
T ss_conf 0312465533
No 475
>PRK08339 short chain dehydrogenase; Provisional
Probab=75.77 E-value=3.8 Score=19.53 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=24.3
Q ss_pred CEECC-HHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 38775-38999999999977985999956876
Q gi|254780168|r 1 MIIGA-GISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGa-G~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
||.|| +=.|..+|..|++.|.+|.+..|+.+
T Consensus 12 lITG~s~GIG~aiA~~la~~Ga~V~i~~r~~~ 43 (263)
T PRK08339 12 FTTASSKGIGFGVARVLARAGADVIILSRNEE 43 (263)
T ss_pred EEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 99162609999999999986999999979889
No 476
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=75.32 E-value=3.5 Score=19.70 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=25.8
Q ss_pred CEECCHHHHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf 387753899999999997798-599995687
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI-QSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~-~v~i~Er~~ 30 (380)
+|||.|=+|.-++-+|+|.|+ +.+|+|.+.
T Consensus 34 ~VvGiGGVGSw~veALaRsGig~itlID~D~ 64 (263)
T COG1179 34 CVVGIGGVGSWAVEALARSGIGRITLIDMDD 64 (263)
T ss_pred EEEECCCHHHHHHHHHHHCCCCEEEEEECHH
T ss_conf 9994584539999999981888189971201
No 477
>KOG1346 consensus
Probab=75.28 E-value=2.6 Score=20.59 Aligned_cols=19 Identities=32% Similarity=0.342 Sum_probs=11.6
Q ss_pred CCCCCCCEEEEEEEEECCC
Q ss_conf 1234531035689974367
Q gi|254780168|r 133 QISKINNQKPDLLVGADGL 151 (380)
Q Consensus 133 ~~~~~~~~~adlvIgADG~ 151 (380)
++.||.+.+.|+||.|-|-
T Consensus 429 kL~dG~~l~tD~vVvavG~ 447 (659)
T KOG1346 429 KLSDGSELRTDLVVVAVGE 447 (659)
T ss_pred EECCCCEEEECEEEEEECC
T ss_conf 9258876451359998357
No 478
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=75.28 E-value=4.5 Score=19.01 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=24.8
Q ss_pred CEECCHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 38775389999999999779859999568
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGIQSCVLEKK 29 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~~v~i~Er~ 29 (380)
+|||||=+|+-=|..|.+.|-+|+|+-++
T Consensus 16 lvvGgG~va~rKa~~ll~~ga~v~Vvs~~ 44 (210)
T COG1648 16 LVVGGGSVALRKARLLLKAGADVTVVSPE 44 (210)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 99899899999999997469979998787
No 479
>pfam01370 Epimerase NAD dependent epimerase/dehydratase family. This family of proteins utilize NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions.
Probab=75.18 E-value=5.3 Score=18.49 Aligned_cols=32 Identities=25% Similarity=0.465 Sum_probs=27.0
Q ss_pred CEE-CCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 387-75389999999999779859999568765
Q gi|254780168|r 1 MII-GAGISGLTLAASLGHRGIQSCVLEKKDQL 32 (380)
Q Consensus 1 iIv-GaG~aGl~~A~~L~~~G~~v~i~Er~~~~ 32 (380)
||. |.|-.|..++..|.++|++|+.+.+.+..
T Consensus 2 LItGasGfiG~~l~~~L~~~g~~v~~~~r~~~~ 34 (235)
T pfam01370 2 LVTGGTGFIGSALVRRLLQEGYEVIVLGRRRRS 34 (235)
T ss_pred EEECCCCHHHHHHHHHHHHCCCEEEEEECCCCH
T ss_conf 997289799999999999787989999899730
No 480
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=75.12 E-value=4 Score=19.36 Aligned_cols=31 Identities=26% Similarity=0.589 Sum_probs=24.6
Q ss_pred CEECCH-HHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 387753-8999999999977985999956876
Q gi|254780168|r 1 MIIGAG-ISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG-~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
||-||+ =.|..+|..|++.|.+|.+.+++.+
T Consensus 14 lVTGas~GIG~aia~~la~~Ga~V~i~~~~~~ 45 (278)
T PRK08277 14 VITGGGGVLGGAMAKELARAGAKVAILDRNQE 45 (278)
T ss_pred EEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 99586748999999999987998999979889
No 481
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=74.94 E-value=4.1 Score=19.27 Aligned_cols=29 Identities=21% Similarity=0.391 Sum_probs=25.0
Q ss_pred EE-CCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 87-753899999999997798599995687
Q gi|254780168|r 2 II-GAGISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 2 Iv-GaG~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
|. |.|+.|..+|..|++.|-+|+|.-|+.
T Consensus 33 V~G~tG~vG~~~A~~lA~~Ga~v~lv~R~~ 62 (194)
T cd01078 33 VLGGTGPVGQRAAVLLAREGARVVLVGRDL 62 (194)
T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 985885789999999998399799995878
No 482
>PRK08945 short chain dehydrogenase; Provisional
Probab=74.88 E-value=4.4 Score=19.08 Aligned_cols=30 Identities=23% Similarity=0.405 Sum_probs=23.6
Q ss_pred CEECCH-HHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 387753-899999999997798599995687
Q gi|254780168|r 1 MIIGAG-ISGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG-~aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
||.||+ =.|..+|..|+++|.+|.++.|+.
T Consensus 17 lITGas~GIG~aiA~~la~~Ga~Vil~~r~~ 47 (245)
T PRK08945 17 LVTGAGDGIGREAALTYARHGATVILLGRTE 47 (245)
T ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 9948861899999999998799899996988
No 483
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=74.86 E-value=5.4 Score=18.44 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=33.9
Q ss_pred EECCHHHHHHHHHHHHCCCEEEEEEECCCCC----C---CCCCCCC-----CCEEEEEEEEECCCCC-CCHHHCCCC
Q ss_conf 2000134788997320687256421012344----3---2112345-----3103568997436766-312112853
Q gi|254780168|r 99 VKRHTLQKILLNHIQTQPLARLHLSTHITHP----D---CTQISKI-----NNQKPDLLVGADGLNS-NIRHYIDTQ 162 (380)
Q Consensus 99 i~r~~l~~~L~~~~~~~~~~~~~~~~~v~~~----~---~~~~~~~-----~~~~adlvIgADG~~S-~vR~~l~~~ 162 (380)
|+=..|.-.+...+.+.+ ..+...++|++. + ++.+.|. ..++|++||-|-|.++ .++++.+.+
T Consensus 125 vDp~rl~~a~a~~A~~~G-a~i~~~~~V~~i~~~~g~v~gv~v~d~~tg~~~~i~ak~VVNAaG~wad~i~~mag~~ 200 (516)
T TIGR03377 125 VDPFRLVAANVLDAQEHG-ARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGLD 200 (516)
T ss_pred ECHHHHHHHHHHHHHHCC-HHHHCCCEEEEEEEECCEEEEEEEEECCCCCEEEEEEEEEEECCCCCHHHHHHHCCCC
T ss_conf 867999999999999736-5644073688999889999999999868897899995389976773568898746998
No 484
>PRK07775 short chain dehydrogenase; Provisional
Probab=74.76 E-value=4.3 Score=19.12 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=24.7
Q ss_pred CEECCHH-HHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 3877538-999999999977985999956876
Q gi|254780168|r 1 MIIGAGI-SGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~-aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
||.||+= .|..+|..|++.|.+|.+..|+.+
T Consensus 14 lVTGAssGIG~aiA~~la~~G~~V~l~~R~~e 45 (275)
T PRK07775 14 IVAGASSGIGAATAIELAAHGFPVALGARRVE 45 (275)
T ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 99462359999999999987998999989899
No 485
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=74.71 E-value=4.2 Score=19.17 Aligned_cols=12 Identities=25% Similarity=0.573 Sum_probs=6.2
Q ss_pred EEEEECCCCCCC
Q ss_conf 899743676631
Q gi|254780168|r 144 LLVGADGLNSNI 155 (380)
Q Consensus 144 lvIgADG~~S~v 155 (380)
+|+||=|+-..+
T Consensus 126 lilGaGGaarai 137 (272)
T PRK12550 126 ALRGSGGMAKAV 137 (272)
T ss_pred EEECCCHHHHHH
T ss_conf 997362338999
No 486
>PRK06949 short chain dehydrogenase; Provisional
Probab=74.70 E-value=4 Score=19.33 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=24.9
Q ss_pred CEECCHH-HHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 3877538-999999999977985999956876
Q gi|254780168|r 1 MIIGAGI-SGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~-aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
||-||+- .|..+|..|+++|.+|.+.+++.+
T Consensus 13 lVTGas~GIG~aiA~~la~~Ga~V~i~~~~~~ 44 (258)
T PRK06949 13 LVTGASSGLGQRFAQVLSQAGAKVVLASRRVE 44 (258)
T ss_pred EEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 99585779999999999987999999969889
No 487
>TIGR01179 galE UDP-glucose 4-epimerase; InterPro: IPR005886 Synonym: UDP-galactose 4-epimerase UDP-glucose 4-epimerase (5.1.3.2 from EC) interconverts UDP-glucose and UDP-galactose which are precursors of glucose- and galactose-containing exopolysaccharides (EPS). A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded and described by a separate model. ; GO: 0003978 UDP-glucose 4-epimerase activity, 0006012 galactose metabolic process.
Probab=74.59 E-value=2.6 Score=20.66 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=56.0
Q ss_pred CEE-CCHHHHHHHHHHHHHCCCEEEEEEC--CCCCCCCCCEEEECHHHHHHHHHCCCHH-----HHHH---CCCCCCCEE
Q ss_conf 387-7538999999999977985999956--8765557713667888999999889947-----8986---268843069
Q gi|254780168|r 1 MII-GAGISGLTLAASLGHRGIQSCVLEK--KDQLSDSGFGIQISPNASRILKRIGILD-----QLED---IWIEPEDFV 69 (380)
Q Consensus 1 iIv-GaG~aGl~~A~~L~~~G~~v~i~Er--~~~~~~~g~gi~l~p~~~~~L~~lGi~~-----~~~~---~~~~~~~~~ 69 (380)
||. |||=.|+-+...|.++|++|.|||= +.......++-.+.++.+.+.+. +|.| ++-. .-..++.+.
T Consensus 3 LVTGGAGYIGSHt~~~Ll~~G~ev~vlDNLs~G~~~~l~~~~~~~G~~~~fv~g-DL~D~~~l~~~f~kqql~~~idAVi 81 (341)
T TIGR01179 3 LVTGGAGYIGSHTVRQLLESGYEVVVLDNLSNGSAEALKRGEEITGKEVTFVEG-DLRDRELLRRVFEKQQLEHKIDAVI 81 (341)
T ss_pred EEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCEECCCCCEEEEE-CCHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 686146644358878876359728998157888488750023414853205871-7515799999987743116754675
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 9978854433345543234444782478620001347889973206872564210123
Q gi|254780168|r 70 FRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHIT 127 (380)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~~~~~~~v~ 127 (380)
..-+.... .+.......+....+. ..| .|.+.+.+.++.++-|++..+
T Consensus 82 HFAg~~~V-------gESv~~Pl~YY~NNv~-nTl--~L~~~m~~~GV~~~iFSSsAa 129 (341)
T TIGR01179 82 HFAGLIAV-------GESVQKPLKYYRNNVV-NTL--NLLEAMQETGVKKFIFSSSAA 129 (341)
T ss_pred EECCCCCC-------HHHHHHHHHHHHHHHH-HHH--HHHHHHHHHCCCCEEECCCCE
T ss_conf 20112125-------2557524544000468-999--999999981897415304214
No 488
>PRK06101 short chain dehydrogenase; Provisional
Probab=74.55 E-value=4.3 Score=19.11 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=23.6
Q ss_pred CEECCHH-HHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 3877538-99999999997798599995687
Q gi|254780168|r 1 MIIGAGI-SGLTLAASLGHRGIQSCVLEKKD 30 (380)
Q Consensus 1 iIvGaG~-aGl~~A~~L~~~G~~v~i~Er~~ 30 (380)
||.||+= .|..+|..|+++|.+|.+..|+.
T Consensus 5 lITGassGIG~a~A~~la~~G~~Vi~~~R~~ 35 (241)
T PRK06101 5 LITGATSGIGKQLALDYAKAGWKVIACGRNE 35 (241)
T ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 9922404999999999998799899998999
No 489
>PRK08655 prephenate dehydrogenase; Provisional
Probab=74.41 E-value=5.4 Score=18.43 Aligned_cols=31 Identities=29% Similarity=0.358 Sum_probs=26.8
Q ss_pred CEE-CCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 387-7538999999999977985999956876
Q gi|254780168|r 1 MII-GAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIv-GaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
+|| |.|=-|-.+|..|.++|++|.|..|++.
T Consensus 4 ~IIGG~G~MG~~Fa~~f~~sGyeV~I~gRd~~ 35 (441)
T PRK08655 4 SIIGGTGGLGKWFARFLKDKGYEVIVWGRDPK 35 (441)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 99947981779999999867988999815731
No 490
>PRK06181 short chain dehydrogenase; Provisional
Probab=74.28 E-value=4.2 Score=19.18 Aligned_cols=31 Identities=26% Similarity=0.415 Sum_probs=23.8
Q ss_pred CEECCH-HHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 387753-8999999999977985999956876
Q gi|254780168|r 1 MIIGAG-ISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG-~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
||-||+ =.|..+|..|+++|.+|.+.+++.+
T Consensus 5 lITGassGIG~a~A~~la~~Ga~vvl~~r~~~ 36 (263)
T PRK06181 5 IITGASEGIGRALAVRLARAGARLVLAARNEE 36 (263)
T ss_pred EEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 99581019999999999987998999988999
No 491
>PRK06194 hypothetical protein; Provisional
Probab=74.07 E-value=4.2 Score=19.23 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=0.0
Q ss_pred CEECCHHH-HHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 38775389-99999999977985999956876
Q gi|254780168|r 1 MIIGAGIS-GLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~a-Gl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
||-||+=+ |..+|..|+++|.+|.+.+++.+
T Consensus 10 vITGassGIG~a~A~~la~~Ga~Vvl~d~~~~ 41 (301)
T PRK06194 10 VITGAASGFGREFARIGARLGMKLVLADVQQD 41 (301)
T ss_pred EEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 99273779999999999987998999979889
No 492
>PRK09242 tropinone reductase; Provisional
Probab=73.98 E-value=4.3 Score=19.15 Aligned_cols=31 Identities=26% Similarity=0.418 Sum_probs=0.0
Q ss_pred CEECCHHH-HHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 38775389-99999999977985999956876
Q gi|254780168|r 1 MIIGAGIS-GLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~a-Gl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
||.||+-+ |..+|..|+++|.+|.+..++.+
T Consensus 14 lITGgs~GIG~a~a~~la~~Ga~V~~~~r~~~ 45 (258)
T PRK09242 14 LITGASKGIGLAIARELLGLGADVLIVARDAD 45 (258)
T ss_pred EEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 99484868999999999987998999969889
No 493
>pfam02826 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain. This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389.
Probab=73.95 E-value=5.7 Score=18.29 Aligned_cols=100 Identities=17% Similarity=0.226 Sum_probs=0.0
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCCC
Q ss_conf 87753899999999997798599995687655577136678889999998899478986268843069997885443334
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELSR 81 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~~~~~g~gi~l~p~~~~~L~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (380)
|||.|-.|..+|..|+--|.+|..+++.......-.+.. ...+.+.-...+-+.+.-.-+.....-
T Consensus 41 IiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~~~~~~--------------~~~l~~ll~~sDii~~~~plt~~T~~l 106 (176)
T pfam02826 41 IIGLGRIGRAVARRLKAFGMKVIAYDRYPKAEAEALGAR--------------YVSLDELLAESDVVSLHLPLTPETRHL 106 (176)
T ss_pred EECCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHCCEE--------------ECCHHHHHHHCCEEEECCCCCCCCCCC
T ss_conf 989699999999999983981254379876102315716--------------668999986299887547674202463
Q ss_pred CCCCCCCCCCCCCEEEEEECCHH--HHHHHHHHHHC
Q ss_conf 55432344447824786200013--47889973206
Q gi|254780168|r 82 FSCKNYSRNNWGGIYGVVKRHTL--QKILLNHIQTQ 115 (380)
Q Consensus 82 ~~~~~~~~~~~~~~~~~i~r~~l--~~~L~~~~~~~ 115 (380)
++...+..-..+.....+.|..+ .+.|.+.+++.
T Consensus 107 i~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~ 142 (176)
T pfam02826 107 INAERLALMKPGAILINTARGGLVDEDALIAALKSG 142 (176)
T ss_pred CCHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHC
T ss_conf 469999851899889980675512899999999809
No 494
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=73.94 E-value=4.4 Score=19.07 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=0.0
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 877538999999999977985999956876
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
|+|||-=|.++|..|++.|..|. +-++++
T Consensus 11 ViGaGawGTALA~~la~n~~~v~-w~r~~~ 39 (340)
T PRK12439 11 VLGGGSWGTTVASICARRGPTLQ-WVRSEE 39 (340)
T ss_pred EECCCHHHHHHHHHHHHCCCEEE-EECCHH
T ss_conf 98969999999999995899899-968999
No 495
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=73.86 E-value=4.8 Score=18.80 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=0.0
Q ss_pred CEECCHHH-HHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 38775389-99999999977985999956876
Q gi|254780168|r 1 MIIGAGIS-GLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~a-Gl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
||.||+-+ |..+|..|+++|.+|.+++++.+
T Consensus 12 lITG~s~GIG~aia~~la~~Ga~V~~~~r~~~ 43 (253)
T PRK08220 12 WVTGAAQGIGYAVALAFVEAGAKVIGFDQAFE 43 (253)
T ss_pred EEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 99588568999999999987999999978877
No 496
>PRK08017 short chain dehydrogenase; Provisional
Probab=73.72 E-value=4.4 Score=19.03 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=0.0
Q ss_pred CEECCHHH-HHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 38775389-99999999977985999956876
Q gi|254780168|r 1 MIIGAGIS-GLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~a-Gl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
||.||+=+ |..+|..|+++|++|.+..|+++
T Consensus 6 lITGassGIG~a~A~~la~~G~~V~~~~r~~~ 37 (256)
T PRK08017 6 LITGCSSGIGLESALELKRQGFRVLAGCRKPD 37 (256)
T ss_pred EEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 99658768999999999987999999969989
No 497
>PRK06500 short chain dehydrogenase; Provisional
Probab=73.70 E-value=4.3 Score=19.10 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=0.0
Q ss_pred CEECCHHH-HHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 38775389-99999999977985999956876
Q gi|254780168|r 1 MIIGAGIS-GLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~a-Gl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
||.||+-+ |..+|..|+++|.+|.+.+|+++
T Consensus 10 lITGas~GIG~aiA~~la~~Ga~V~i~~r~~~ 41 (249)
T PRK06500 10 LITGGTSGIGLETARQFAAEGARVAITGRDAA 41 (249)
T ss_pred EEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 99376878999999999987999999969989
No 498
>PRK07041 short chain dehydrogenase; Provisional
Probab=73.55 E-value=4.4 Score=19.06 Aligned_cols=31 Identities=19% Similarity=0.471 Sum_probs=0.0
Q ss_pred CEECCHH-HHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 3877538-999999999977985999956876
Q gi|254780168|r 1 MIIGAGI-SGLTLAASLGHRGIQSCVLEKKDQ 31 (380)
Q Consensus 1 iIvGaG~-aGl~~A~~L~~~G~~v~i~Er~~~ 31 (380)
||.||+- .|..+|..|+++|.+|.+..|+++
T Consensus 11 lITGgs~GIG~aia~~la~~Ga~V~i~~r~~~ 42 (240)
T PRK07041 11 LVVGGSSGIGLAAARAFAARGADVTIASRSRE 42 (240)
T ss_pred EEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 99577888999999999987999999959889
No 499
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=73.44 E-value=5 Score=18.66 Aligned_cols=29 Identities=34% Similarity=0.603 Sum_probs=0.0
Q ss_pred CEECCHHHHHHHHHHHHHCCC---EEEEEECC
Q ss_conf 387753899999999997798---59999568
Q gi|254780168|r 1 MIIGAGISGLTLAASLGHRGI---QSCVLEKK 29 (380)
Q Consensus 1 iIvGaG~aGl~~A~~L~~~G~---~v~i~Er~ 29 (380)
+|.|||-||..+|-.|...|+ ++.++|+.
T Consensus 203 v~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~ 234 (432)
T COG0281 203 VINGAGAAGIAIADLLVAAGVKEENIFVVDRK 234 (432)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 99677588999999999828984458998167
No 500
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=73.37 E-value=5.3 Score=18.51 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=0.0
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 877538999999999977985999956
Q gi|254780168|r 2 IIGAGISGLTLAASLGHRGIQSCVLEK 28 (380)
Q Consensus 2 IvGaG~aGl~~A~~L~~~G~~v~i~Er 28 (380)
|||.|-.|..+|..|.--|++|.+++.
T Consensus 121 IIG~G~IG~~va~~l~afG~~vl~~DP 147 (379)
T PRK00257 121 IVGVGHVGGRLVRVLRGLGWKVLVCDP 147 (379)
T ss_pred EECCCHHHHHHHHHHHHCCCEEEEECC
T ss_conf 977167999999999977998999784
Done!