HHsearch alignment for GI: 254780168 and conserved domain: pfam08491
>pfam08491 SE Squalene epoxidase. This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway. Putative transmembrane regions are found to the protein's C-terminus.
Probab=99.64 E-value=1.1e-14 Score=119.33 Aligned_cols=207 Identities=17% Similarity=0.221 Sum_probs=136.9
Q ss_pred EEEEEEECCCCCCCHHHCCCCCCCCCCCEEEEEE-CCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCC
Q ss_conf 5689974367663121128533443110157860-365446554566760899765405788840489737999984577
Q gi|254780168|r 142 PDLLVGADGLNSNIRHYIDTQPITFSGDVVLRCL-IPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKH 220 (380)
Q Consensus 142 adlvIgADG~~S~vR~~l~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (380)
T Consensus 2 ApLtvv~DG~~S~fRk~l~~~~~~v~--S~FvGl~l~~~~---lp~p~hGhViL~~~~PvL~YqIs~~etR~Lvdv~~~~ 76 (276)
T pfam08491 2 APLTIVCDGCFSKFRKSLSDNKVEVG--SYFVGLILKNAD---LPAPNHGHVILGKPSPILLYQISSTETRILCDYPGPK 76 (276)
T ss_pred CCEEEEECCCCHHHHHHHCCCCCCEE--EEEEEEEECCCC---CCCCCCEEEEECCCCCEEEEECCCCCEEEEEECCCCC
T ss_conf 98699816850587887348999630--168999971788---9998804899669986899972898368999537888
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHH-CCCCCCEEEE-CCC--CCCCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCHHHHH
Q ss_conf 421112345532223898986321-2802220110-023--321012334654210146871121111124483033420
Q gi|254780168|r 221 TLKDISFLKRSEIHKEWFVKHLTN-WHQEIIQLIL-QIN--DTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGA 296 (380)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~-~~~--~~~~~~l~~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~ 296 (380)
T Consensus 77 lPs-~---~-ng~~~~yl~~~v~P~lP~~lr~~f~~Al~~g~iRsMPn~~lp~~~-~~~~G~illGDA~NmRHPLTGgGM 150 (276)
T pfam08491 77 LPS-I---A-NGELKEYLKTSVAPQIPKELRPSFLAALDEGKIRSMPNSFLPASK-NRKKGLILLGDALNMRHPLTGGGM 150 (276)
T ss_pred CCC-C---C-CCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCEEEEEHHHCCCCCCCCCCE
T ss_conf 998-6---6-416899999714667988899999999965992447502188876-799878997111058898557666
Q ss_pred CCCHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHH
Q ss_conf 13036799999985248-------989999999998679999999999998898367898-9999999998
Q gi|254780168|r 297 NMAIEDAYALSYLLGKK-------TIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRP-ASLFRNAGLR 359 (380)
Q Consensus 297 n~al~Da~~La~~L~~~-------~~~~~l~~Y~~~R~~~~~~i~~~s~~~~~~~~~~~~-~~~~r~~~l~ 359 (380)
T Consensus 151 TVal~Dvv~L~~lL~~~~dl~d~~~v~~~l~~F~~~Rk~~~s~IN~LA~ALY~lF~a~~~~l~~Lr~gcF~ 221 (276)
T pfam08491 151 TVALNDIVLLRKLLGPLRDLSDREKVSKVLKSFHWLRKPYDAVINTLSIALYSLFAADSDELKALRKGCFD 221 (276)
T ss_pred EEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 76420899999863778885217999999999988625540879999999999984897799999999999