RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780168|ref|YP_003064581.1| monooxygenase FAD-binding protein [Candidatus Liberibacter asiaticus str. psy62] (380 letters) >gnl|CDD|30999 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]. Length = 387 Score = 187 bits (477), Expect = 3e-48 Identities = 103/385 (26%), Positives = 160/385 (41%), Gaps = 30/385 (7%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKK-DQLSDSGFGIQISPNASRILKRIGILDQLED 60 I+GAG +GL LA +L G+ +LE+ +L + G GI +SPNA R L+R+G+ D+LE Sbjct: 7 IVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEA 66 Query: 61 IWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARL 120 + + P + + L F R G + VV R L LL + P L Sbjct: 67 LGVPPLHVMVVDDGG-RRLLIFDAAELGR---GALGYVVPRSDLLNALLEAARALPNVTL 122 Query: 121 HLSTHIT----HPDCTQIS-KINNQ--KPDLLVGADGLNSNIRHYIDTQPITFS--GDVV 171 + D ++ + + DLLVGADG NS +R + G Sbjct: 123 RFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSAVRRAAGIAEFSGRDYGQTA 182 Query: 172 LRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKRS 231 L + E + F PL DN ++V+ +D+ + Sbjct: 183 LVANVEPEEPHEGRAGE----RFTHAGPFALLPL-PDNRSSVVWSLPPGPAEDL----QG 233 Query: 232 EIHKEWFVKHLTNWHQEIIQ-LILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLP 290 +E+ + + + ++ +PL + + + VLIGDAAH + P Sbjct: 234 LSDEEFLRELQRRLGERDPLGRVTLVSSRSAFPLSLRVAERYR-RGRVVLIGDAAHAMHP 292 Query: 291 FAAQGANMAIEDAYALSYLLGK----KTIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHM 346 A QGAN+A+EDA AL+ L AA++AY+ R R + I+ ++ LF Sbjct: 293 LAGQGANLALEDAAALAEALAAAPRPGADAAALAAYEARRRPRAEAIQKLSRALGRLFSA 352 Query: 347 H-RPASLFRNAGLRLGIHKPLHKSL 370 A RN GLRL P + Sbjct: 353 DGPFARFLRNLGLRLLDRLPPLREA 377 >gnl|CDD|37825 KOG2614, KOG2614, KOG2614, Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion, General function prediction only]. Length = 420 Score = 137 bits (346), Expect = 5e-33 Identities = 82/347 (23%), Positives = 136/347 (39%), Gaps = 37/347 (10%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDI 61 I+G GI GL A +L +GI VLE ++ G I ++ N R LK IG+ +Q+ + Sbjct: 7 IVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAIGLKEQIREQ 66 Query: 62 WIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLH 121 I V G + KE+SR I + +R+ LQ++L + T + + H Sbjct: 67 GIPLGGRVLIHGDSGKEVSRILYGEPDEY----ILRINRRNLLQELLAEALPTGTI-KFH 121 Query: 122 LSTHITHPDCTQISKINNQKP-----------DLLVGADGLNSNIRHYIDTQPITFSGDV 170 S +I + + DLL+G DG S +R ++ + + G Sbjct: 122 -SNLSCTSKDVEIETLGKKLVVHLSDGTTVKGDLLIGCDGAYSKVRKWLGFKEPRYDGS- 179 Query: 171 VLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKR 230 + P I F + L ++P + I F+ T D + Sbjct: 180 --QAYRGLGFIPNGIPFGKKVFAIYGN-GLHSWPRPGFHLIAYWFLDKSLTSTDFAPFDE 236 Query: 231 SEIHKEWFVKHLTNWHQEIIQLILQINDTHL----------YPLFECECKHWHNKKNAVL 280 E K+ ++ + + + +I + + +PL +C N VL Sbjct: 237 PEKLKKTSLEVVDFFPENFPDIIELTGEESIVRTPLADRPPWPLISVKCS----PGNVVL 292 Query: 281 IGDAAHTLLPFAAQGANMAIEDAYALSYLLGK--KTIPAAISAYQKV 325 +GDAAH + PF QG N A ED L+ L + + A Y + Sbjct: 293 LGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAINDVSLAGEEYSRE 339 >gnl|CDD|144912 pfam01494, FAD_binding_3, FAD binding domain. This domain is involved in FAD binding in a number of enzymes. Length = 349 Score = 78.9 bits (195), Expect = 2e-15 Identities = 62/349 (17%), Positives = 113/349 (32%), Gaps = 74/349 (21%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDI 61 I+G G +GL LA L G++ ++E+ S ++ +L++ G+ D++ Sbjct: 6 IVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAGGLNQRTMELLRQAGLEDRILAE 65 Query: 62 WIEPEDFVFRSGSTLK---ELSR-FSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQ---- 113 E +T + +L S + +Y + L+ IL H + Sbjct: 66 GAPHEGMGLAFYNTSRRRADLDFLTSPPRVT------VYPQTE---LEPILREHAEARGA 116 Query: 114 -----TQPLARLH----LSTHITHPDCTQISKINNQKPDLLVGADGLNSNIRHYIDTQPI 164 T+ L+ ++ + + + + LVG DG S +R + I Sbjct: 117 QVRFGTEVLSLEQDGDGVTAVVRDRRDGEEYTV---RAKYLVGCDGGRSPVRKQL---GI 170 Query: 165 TFSGDVVLRCLIPQNNAPEFIDFQSVNIFFG--------PDSHLVTYPLREDNTINMVFV 216 F G E + F S+++ F + + + MV Sbjct: 171 EFEG-------------FEGVPFGSLDVLFDAPDLSDPVERAFVHYLIYAPHSRGFMVGP 217 Query: 217 SSKHTLKDISFLKRSEIHKEWFVKHLTNW-----HQEIIQLILQINDTHLYPLFECECKH 271 + R + W + +E Q + L + Sbjct: 218 WRS------AGRSRYYVQVPWD-PEVEERPEEFTDEEAKQRLRSAVGIDLADVEILWKSI 270 Query: 272 WHNKKNAV---------LIGDAAHTLLPFAAQGANMAIEDAYALSYLLG 311 W + L GDAAH P QG N I+DA+ L++ L Sbjct: 271 WGVRSRVATRYRKGRVFLAGDAAHIHPPTGGQGLNTGIQDAFNLAWKLA 319 >gnl|CDD|30989 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]. Length = 396 Score = 62.1 bits (150), Expect = 2e-10 Identities = 70/359 (19%), Positives = 125/359 (34%), Gaps = 38/359 (10%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSD-SGFGIQISPNASRILKRIGILDQLED 60 I+GAG +G + A L G+ VLEK + G +SP A L I D E+ Sbjct: 8 IVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEEL----IPDFDEE 63 Query: 61 IWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARL 120 I + + + Y +V R K L + A L Sbjct: 64 IERKVTGARIYFPGEKVAIEVPVGEGY----------IVDRAKFDKWLAERAEEA-GAEL 112 Query: 121 HLSTHIT----HPDCTQISKINNQ---KPDLLVGADGLNSNIRHYI---DTQPITFSGDV 170 + T +T D + + +++ ADG+NS + + D +P ++ V Sbjct: 113 YPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGLKDRKPEDYAIGV 172 Query: 171 VLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKR 230 +P + E + +++ G + +PL D N+ L D L Sbjct: 173 KEVIEVPDDGDVEEFLYGPLDVGPGGYGWI--FPL-GDGHANVGIGV----LLDDPSLSP 225 Query: 231 SEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLP 290 E F +H + IL+ P + +L+GDAA + P Sbjct: 226 FLELLERFKEHPAIRKLLLGGKILEYA-AGGIPEGGPASRPLV-GDGVLLVGDAAGFVNP 283 Query: 291 FAAQGANMAIEDAYALSYLL--GKKTIPAAISAYQK-VRAVRVKRIRYRTKLNQLLFHM 346 +G AI+ + + + A++ Y++ +R + +L +LL + Sbjct: 284 LTGEGIRYAIKSGKLAAEAIAEALEGGEEALAEYERLLRKSLAREDLKSLRLLKLLLRL 342 >gnl|CDD|39059 KOG3855, KOG3855, KOG3855, Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism, Energy production and conversion]. Length = 481 Score = 56.1 bits (135), Expect = 1e-08 Identities = 82/431 (19%), Positives = 140/431 (32%), Gaps = 79/431 (18%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFG----------------IQISPN 44 +I+G G GL LAA+LG +KK L D+G ISP Sbjct: 40 VIVGGGPVGLALAAALGS---NPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPA 96 Query: 45 ASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTL 104 + + K IG D + + + S L F N + + +++ + Sbjct: 97 SISLFKSIGAWDHIFHDRYQKFSRMLVWDSCSAALILFDHDNVGID----MAFIIENDNI 152 Query: 105 QKILLNHIQTQPLARLHLSTHITHPDCTQISKINNQKP----------------DLLVGA 148 Q L N + + DCT + DLL+GA Sbjct: 153 QCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLTDGINFATDLLIGA 212 Query: 149 DGLNSNIRHYIDTQPITFS-------GDVVLRCLIPQNN--APEFIDFQSVNIFFGPD-- 197 DG NS +R + +++ + L N F+ + + D Sbjct: 213 DGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLPTGPIALLPLSDTL 272 Query: 198 ------------SHLVTYPLRE-DNTINMVFVSSKHTLK-----DISFLKRSEIHKEWFV 239 S L + P + +N F S D + R+++ + Sbjct: 273 SSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLN 332 Query: 240 KHLTNWHQEIIQLILQINDTHLYPLFECECKHWHN--KKNAVLIGDAAHTLLPFAAQGAN 297 +Q+ + ++ D F H LIGDAAH + P A QG N Sbjct: 333 TSKRLANQQYPPSVFEVGDK-SRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVN 391 Query: 298 MAIEDAYALSYLLGKKTIPAA-ISAYQKVRAVRVKRIRYRTKLNQLLFHMHR-------P 349 + D L L + + + + + + +R+++ L + +H+ P Sbjct: 392 LGFSDVKILVDSLSEAIVSGLDLGSVEHLEPYERERLQHNYVLLGAVDKLHKLYATSAPP 451 Query: 350 ASLFRNAGLRL 360 L R GL+L Sbjct: 452 VVLLRTFGLQL 462 >gnl|CDD|36512 KOG1298, KOG1298, KOG1298, Squalene monooxygenase [Lipid transport and metabolism]. Length = 509 Score = 42.2 bits (99), Expect = 2e-04 Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60 +I+GAG++G LA +L G + V+E+ D G + P L ++G+ D +E Sbjct: 49 IIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEG 108 Query: 61 I 61 I Sbjct: 109 I 109 >gnl|CDD|31426 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]. Length = 487 Score = 41.2 bits (96), Expect = 5e-04 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 15/95 (15%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL-------------SDSGFGIQISPNASRI 48 +IGAG++GL AA L G++ VLEK D++ D+G + P+ + Sbjct: 8 VIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLMPDPGPL 67 Query: 49 LKRIGILDQ--LEDIWIEPEDFVFRSGSTLKELSR 81 + +G LD L+ + +P VF ++ Sbjct: 68 FRELGNLDADGLDLLPPDPAYRVFLPDGDAIDVYT 102 >gnl|CDD|144747 pfam01266, DAO, FAD dependent oxidoreductase. This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 309 Score = 38.9 bits (91), Expect = 0.003 Identities = 13/29 (44%), Positives = 18/29 (62%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKD 30 +IG GI GL+ A L RG+ +LE+ D Sbjct: 4 VIGGGIVGLSTAYELARRGLSVTLLERGD 32 >gnl|CDD|31009 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]. Length = 387 Score = 36.8 bits (84), Expect = 0.010 Identities = 26/125 (20%), Positives = 38/125 (30%), Gaps = 8/125 (6%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL----SDSGFGIQISPNASRILKRIGILDQ 57 IIG GI GL+ A L RG VLE + + GI ++P AS + Sbjct: 9 IIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGRNAGGI-LAPWASPGGELEVRP-- 65 Query: 58 LEDIWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPL 117 L D+ + + T L R G ++ + L Sbjct: 66 LADLSLALWRELSEELGTGAGLRR-RGLLDLAAREGLKGLAQLERLAAELEAAGEDAELL 124 Query: 118 ARLHL 122 Sbjct: 125 DAAEA 129 >gnl|CDD|35252 KOG0029, KOG0029, KOG0029, Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]. Length = 501 Score = 36.5 bits (84), Expect = 0.011 Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 +IGAG++GL+ A L G VLE +D++ Sbjct: 20 VIGAGLAGLSAARQLQDFGFDVLVLEARDRV 50 >gnl|CDD|31822 COG1635, THI4, Flavoprotein involved in thiazole biosynthesis [Coenzyme metabolism]. Length = 262 Score = 36.0 bits (83), Expect = 0.018 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 7/60 (11%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFG-------IQISPNASRILKRIGI 54 I+GAG SGLT A L G++ + E+K +G I + A IL GI Sbjct: 35 IVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGI 94 >gnl|CDD|30795 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]. Length = 415 Score = 35.3 bits (80), Expect = 0.028 Identities = 13/53 (24%), Positives = 28/53 (52%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGI 54 ++GAG GL A + RG + ++E D+L +++ + +L++ G+ Sbjct: 141 VVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGV 193 >gnl|CDD|144475 pfam00890, FAD_binding_2, FAD binding domain. This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401 Score = 34.6 bits (80), Expect = 0.042 Identities = 10/27 (37%), Positives = 17/27 (62%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEK 28 +IG+G++GL A G++ V+EK Sbjct: 4 VIGSGLAGLAAALEAAEAGLKVAVVEK 30 >gnl|CDD|145231 pfam01946, Thi4, Thi4 family. This family includes a putative thiamine biosynthetic enzyme. Length = 229 Score = 34.7 bits (80), Expect = 0.042 Identities = 12/28 (42%), Positives = 19/28 (67%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKK 29 I+GAG SGLT A L +G++ ++E+ Sbjct: 22 IVGAGPSGLTAAYYLAKKGLKVAIIERS 49 >gnl|CDD|32255 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]. Length = 443 Score = 34.3 bits (78), Expect = 0.051 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Query: 2 IIGAGISGLTLAASLGHRGIQS-CVLEKKDQLSDS 35 IIGAG SGL A +L G+ + EK+D + + Sbjct: 13 IIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGT 47 >gnl|CDD|36497 KOG1283, KOG1283, KOG1283, Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]. Length = 414 Score = 33.9 bits (77), Expect = 0.071 Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 21/67 (31%) Query: 58 LEDIWIEPEDFVFRSGSTLKELSRF-------------SCKNY--------SRNNWGGIY 96 L D WI PEDFVF G LK +SR K + WGG Sbjct: 161 LGDSWISPEDFVFSWGPLLKHVSRLDDNGLDSSNSGAEKGKGGVDGGKWGGATGGWGGGE 220 Query: 97 GVVKRHT 103 ++ R + Sbjct: 221 NLISRES 227 >gnl|CDD|30923 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]. Length = 532 Score = 33.7 bits (77), Expect = 0.084 Identities = 11/29 (37%), Positives = 18/29 (62%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKD 30 +IG GI+G +A RG++ ++EK D Sbjct: 17 VIGGGITGAGIARDAAGRGLKVALVEKGD 45 >gnl|CDD|31443 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]. Length = 793 Score = 33.3 bits (76), Expect = 0.11 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKR 51 +IG G+ GL A L G++ V+ L + Q+ A R+L+R Sbjct: 150 VIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMER----QLDRTAGRLLRR 195 >gnl|CDD|31425 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism]. Length = 444 Score = 33.4 bits (76), Expect = 0.12 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 10/74 (13%) Query: 2 IIGAGISGLTLAASLGHRG--IQSCVLEKKDQL-------SDSGFGIQISPNASRILKRI 52 IIG GI+GL+ A L G ++ + E D++ GF + P+ K Sbjct: 5 IIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEE 64 Query: 53 GILDQLEDIWIEPE 66 ILD ++++ +E + Sbjct: 65 -ILDLIKELGLEDK 77 >gnl|CDD|33375 COG3573, COG3573, Predicted oxidoreductase [General function prediction only]. Length = 552 Score = 33.0 bits (75), Expect = 0.12 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 21/85 (24%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSG-----FG---IQISPNASRILKRI 52 +++GAG++GL AA L G + +L+++ + + G FG + SP +R+ Sbjct: 9 IVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAFWSFGGLFLVDSPEQ----RRL 64 Query: 53 GILDQLE---DIWI------EPEDF 68 GI D L+ W PED Sbjct: 65 GIRDSLDLARQDWFGTAAFDRPEDH 89 >gnl|CDD|31342 COG1148, HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]. Length = 622 Score = 32.2 bits (73), Expect = 0.26 Identities = 10/33 (30%), Positives = 20/33 (60%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 ++IG G++G+T A L G + ++EK+ + Sbjct: 128 LVIGGGVAGITAALELADMGFKVYLVEKEPSIG 160 >gnl|CDD|36613 KOG1399, KOG1399, KOG1399, Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]. Length = 448 Score = 31.9 bits (72), Expect = 0.30 Identities = 12/32 (37%), Positives = 17/32 (53%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 +IGAG +GL A L G + V E+ D + Sbjct: 11 VIGAGPAGLAAARELLREGHEVVVFERTDDIG 42 >gnl|CDD|32458 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]. Length = 542 Score = 31.6 bits (71), Expect = 0.34 Identities = 12/27 (44%), Positives = 17/27 (62%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLE 27 +I+G+G +G LAA L G+ VLE Sbjct: 11 VIVGSGSAGSVLAARLSDAGLSVLVLE 37 >gnl|CDD|143852 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82 Score = 31.8 bits (73), Expect = 0.35 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGI 54 ++G G GL A++L G + V+E++D+L GF +I+ L++ GI Sbjct: 4 VVGGGYIGLEFASALAKLGSKVTVVERRDRLL-RGFDEEIAKILQEKLEKNGI 55 >gnl|CDD|38055 KOG2844, KOG2844, KOG2844, Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]. Length = 856 Score = 31.1 bits (70), Expect = 0.48 Identities = 11/33 (33%), Positives = 20/33 (60%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33 ++IG G G + A L RG++ VL ++ +L+ Sbjct: 43 VVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLT 75 >gnl|CDD|31424 COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism]. Length = 450 Score = 31.1 bits (70), Expect = 0.49 Identities = 13/31 (41%), Positives = 21/31 (67%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 I+GAG++GL+ A L G Q +LE +D++ Sbjct: 12 IVGAGLAGLSAAYELKKAGYQVQILEARDRV 42 >gnl|CDD|30924 COG0579, COG0579, Predicted dehydrogenase [General function prediction only]. Length = 429 Score = 31.0 bits (70), Expect = 0.51 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%) Query: 1 MIIGAGISGLTLAASLGHRGIQS--CVLEKKDQLSD 34 +IIG GI G A L +LEK+D ++ Sbjct: 7 VIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQ 42 >gnl|CDD|146239 pfam03486, HI0933_like, HI0933-like protein. Length = 405 Score = 30.6 bits (70), Expect = 0.65 Identities = 12/31 (38%), Positives = 18/31 (58%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 +IG G +GL A S RG + ++EK +L Sbjct: 5 VIGGGAAGLMAAISAAKRGRRVLLIEKGKKL 35 >gnl|CDD|113586 pfam04820, Trp_halogenase, Tryptophan halogenase. Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent. Length = 457 Score = 30.8 bits (70), Expect = 0.66 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 272 WHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKKTI-PAAISAYQKVRAVRV 330 W KN V +G A+ L P + ++ L L PAAI+ Y + A Sbjct: 317 WV--KNVVALGLASGFLEPLESTSIHLIQSALRRLLALFPDGGFDPAAIAEYNRRIAREY 374 Query: 331 KRIR 334 +RIR Sbjct: 375 ERIR 378 >gnl|CDD|36549 KOG1335, KOG1335, KOG1335, Dihydrolipoamide dehydrogenase [Energy production and conversion]. Length = 506 Score = 30.7 bits (69), Expect = 0.66 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGI 54 +IGAG GL + + G + V+E DQ+ +IS R+L++ GI Sbjct: 216 VIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIG-GVMDGEISKAFQRVLQKQGI 267 >gnl|CDD|32264 COG2081, COG2081, Predicted flavoproteins [General function prediction only]. Length = 408 Score = 30.5 bits (69), Expect = 0.79 Identities = 11/31 (35%), Positives = 17/31 (54%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 IIG G +GL A S G + +++K +L Sbjct: 8 IIGGGPAGLMAAISAAKAGRRVLLIDKGPKL 38 >gnl|CDD|30838 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]. Length = 305 Score = 30.6 bits (69), Expect = 0.80 Identities = 9/31 (29%), Positives = 16/31 (51%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 IIG G +GLT A G++ ++ + + Sbjct: 8 IIGGGPAGLTAAIYAARAGLKVVLILEGGEP 38 >gnl|CDD|33187 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]. Length = 331 Score = 29.6 bits (66), Expect = 1.3 Identities = 13/27 (48%), Positives = 17/27 (62%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEK 28 I+GAGI+GL A +L G + V EK Sbjct: 6 IVGAGIAGLAAAYALREAGREVTVFEK 32 >gnl|CDD|31253 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]. Length = 562 Score = 29.6 bits (66), Expect = 1.7 Identities = 9/27 (33%), Positives = 14/27 (51%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEK 28 +IG G +GL A G++ +L K Sbjct: 11 VIGGGGAGLRAAIEAAEAGLKVALLSK 37 >gnl|CDD|112814 pfam04015, DUF362, Domain of unknown function (DUF362). Sometimes present in iron-sulphur proteins. Length = 262 Score = 29.0 bits (65), Expect = 1.9 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 5/35 (14%) Query: 35 SGFGIQISPNASRILKRIGILDQLEDIWIEPEDFV 69 GFG NAS +LK +GILD ++ I +F Sbjct: 81 PGFG-----NASAVLKTMGILDLARELDITVVEFD 110 >gnl|CDD|39455 KOG4254, KOG4254, KOG4254, Phytoene desaturase [Coenzyme transport and metabolism]. Length = 561 Score = 29.2 bits (65), Expect = 2.0 Identities = 13/28 (46%), Positives = 17/28 (60%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKK 29 +IG G +GLT AA L G VLE++ Sbjct: 19 VIGGGHNGLTAAAYLARYGQSVAVLERR 46 >gnl|CDD|30908 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]. Length = 374 Score = 29.1 bits (65), Expect = 2.2 Identities = 10/32 (31%), Positives = 20/32 (62%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 +I+GAG+SG +A G + ++EK++ + Sbjct: 5 LIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHI 36 >gnl|CDD|30839 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]. Length = 457 Score = 29.1 bits (65), Expect = 2.3 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 12/63 (19%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSG---FGI-------QISPNASRILKR 51 +IGAG +GL A L G V E+ D G +GI I +L+R Sbjct: 128 VIGAGPAGLAAADDLSRAGHDVTVFERVAL--DGGLLLYGIPDFKLPKDILDRRLELLER 185 Query: 52 IGI 54 G+ Sbjct: 186 SGV 188 >gnl|CDD|30379 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism]. Length = 518 Score = 29.1 bits (65), Expect = 2.3 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 IIG+G++GLT A SL + VL K Sbjct: 12 IIGSGLAGLTAALSL-APSFRVTVLTKGPL 40 >gnl|CDD|33157 COG3349, COG3349, Uncharacterized conserved protein [Function unknown]. Length = 485 Score = 28.7 bits (64), Expect = 2.8 Identities = 12/31 (38%), Positives = 17/31 (54%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 I GAG++GL A L G + E +D+L Sbjct: 5 IAGAGLAGLAAAYELADAGYDVTLYEARDRL 35 >gnl|CDD|32731 COG2907, COG2907, Predicted NAD/FAD-binding protein [General function prediction only]. Length = 447 Score = 28.4 bits (63), Expect = 3.4 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 21/73 (28%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLS-----------------DSGFGIQIS-- 42 +IG+GISGL+ A L R + E +L D+GF + Sbjct: 13 VIGSGISGLSAAWLLSRRH-DVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERT 71 Query: 43 -PNASRILKRIGI 54 PN +R+ K IG+ Sbjct: 72 YPNLTRLFKTIGV 84 >gnl|CDD|146385 pfam03721, UDPG_MGDP_dh_N, UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate. Length = 185 Score = 28.0 bits (63), Expect = 4.1 Identities = 8/21 (38%), Positives = 9/21 (42%) Query: 2 IIGAGISGLTLAASLGHRGIQ 22 +IG G GL A L G Sbjct: 5 VIGLGYVGLPTAVCLAEIGHD 25 >gnl|CDD|35904 KOG0685, KOG0685, KOG0685, Flavin-containing amine oxidase [Coenzyme transport and metabolism]. Length = 498 Score = 28.0 bits (62), Expect = 5.0 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Query: 2 IIGAGISGLTLAASLGHRGIQSC-VLEKKDQL 32 IIGAGI+GL A L G +LE D++ Sbjct: 26 IIGAGIAGLAAATRLLENGFIDVLILEASDRI 57 >gnl|CDD|40000 KOG4803, KOG4803, KOG4803, Uncharacterized conserved protein [Function unknown]. Length = 610 Score = 27.3 bits (60), Expect = 6.4 Identities = 27/119 (22%), Positives = 44/119 (36%), Gaps = 20/119 (16%) Query: 37 FGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGS-TLKELSR---------FSCKN 86 IQ + S ++ R IL+ DI ED V R+ L +L+ S K+ Sbjct: 296 EPIQTMTDVSGLIGRYSILNAEFDI----EDVVQRAEVRQLTDLTDKVWELVKCCHSVKD 351 Query: 87 ---YSRNNWGGI-YGVVKRHTLQKILLNHIQTQPLARLHLSTHITHPDCTQISKINNQK 141 +S ++ T + L I + LARL + +S+I +K Sbjct: 352 LIAFSMLFQCAARCNIINTPTNKNRLAKIITS--LARLAMPCLSGAEPLELLSEIGLEK 408 >gnl|CDD|38031 KOG2820, KOG2820, KOG2820, FAD-dependent oxidoreductase [General function prediction only]. Length = 399 Score = 27.2 bits (60), Expect = 7.3 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILK 50 I+GAG+ GL+ A L RG + +LE+ G S SRI++ Sbjct: 12 IVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRG----SSHGISRIIR 56 >gnl|CDD|36355 KOG1140, KOG1140, KOG1140, N-end rule pathway, recognition component UBR1 [Posttranslational modification, protein turnover, chaperones]. Length = 1738 Score = 27.2 bits (60), Expect = 7.6 Identities = 31/116 (26%), Positives = 40/116 (34%), Gaps = 10/116 (8%) Query: 94 GIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHPD-CTQISKINNQKPDLLVGADGLN 152 GI ++R L K LLN++ A L S++ CT +S N Q L D L Sbjct: 1492 GILSFLRRAALFKHLLNNVFPPFGAFLDPSSNSELEHLCTYLSLPNLQACLLQSSGDELR 1551 Query: 153 SNIRHYIDTQPITFSGDVVLRCLIPQNNAP----EFIDFQSVNI-----FFGPDSH 199 I + + L L P E D S I FF P S Sbjct: 1552 QAIERWCGGTENLKREEHYLNTLSINPRIPNSLVELPDEYSCLINSASFFFCPKSG 1607 >gnl|CDD|31444 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]. Length = 405 Score = 27.1 bits (60), Expect = 8.9 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRIL 49 I+G G +G+ LA L R + L KK ++ S + + RIL Sbjct: 160 IVGGGPTGVELAGELAERLHR---LLKKFRVDPSELRVILVEAGPRIL 204 >gnl|CDD|31441 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]. Length = 454 Score = 27.1 bits (60), Expect = 9.3 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGI 54 I+G G GL A+ G + V+E+ D++ G +IS ++ L++ G+ Sbjct: 178 IVGGGYIGLEFASVFAALGSKVTVVERGDRIL-PGEDPEISKELTKQLEKGGV 229 >gnl|CDD|35549 KOG0328, KOG0328, KOG0328, Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]. Length = 400 Score = 26.8 bits (59), Expect = 9.9 Identities = 10/27 (37%), Positives = 17/27 (62%) Query: 15 SLGHRGIQSCVLEKKDQLSDSGFGIQI 41 SL R ++ VL++ D++ + GF QI Sbjct: 164 SLRTRAVKMLVLDEADEMLNKGFKEQI 190 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.323 0.138 0.424 Gapped Lambda K H 0.267 0.0719 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 4,736,197 Number of extensions: 253371 Number of successful extensions: 672 Number of sequences better than 10.0: 1 Number of HSP's gapped: 660 Number of HSP's successfully gapped: 54 Length of query: 380 Length of database: 6,263,737 Length adjustment: 95 Effective length of query: 285 Effective length of database: 4,210,882 Effective search space: 1200101370 Effective search space used: 1200101370 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 58 (26.1 bits)