RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780168|ref|YP_003064581.1| monooxygenase FAD-binding
protein [Candidatus Liberibacter asiaticus str. psy62]
         (380 letters)



>gnl|CDD|30999 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related
           FAD-dependent oxidoreductases [Coenzyme metabolism /
           Energy production and conversion].
          Length = 387

 Score =  187 bits (477), Expect = 3e-48
 Identities = 103/385 (26%), Positives = 160/385 (41%), Gaps = 30/385 (7%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLEKK-DQLSDSGFGIQISPNASRILKRIGILDQLED 60
           I+GAG +GL LA +L   G+   +LE+   +L + G GI +SPNA R L+R+G+ D+LE 
Sbjct: 7   IVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEA 66

Query: 61  IWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARL 120
           + + P   +       + L  F      R   G +  VV R  L   LL   +  P   L
Sbjct: 67  LGVPPLHVMVVDDGG-RRLLIFDAAELGR---GALGYVVPRSDLLNALLEAARALPNVTL 122

Query: 121 HLSTHIT----HPDCTQIS-KINNQ--KPDLLVGADGLNSNIRHYIDTQPITFS--GDVV 171
                +       D   ++   + +    DLLVGADG NS +R        +    G   
Sbjct: 123 RFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSAVRRAAGIAEFSGRDYGQTA 182

Query: 172 LRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKRS 231
           L   +      E    +     F         PL  DN  ++V+       +D+    + 
Sbjct: 183 LVANVEPEEPHEGRAGE----RFTHAGPFALLPL-PDNRSSVVWSLPPGPAEDL----QG 233

Query: 232 EIHKEWFVKHLTNWHQEIIQ-LILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLP 290
              +E+  +      +      +  ++    +PL     + +  +   VLIGDAAH + P
Sbjct: 234 LSDEEFLRELQRRLGERDPLGRVTLVSSRSAFPLSLRVAERYR-RGRVVLIGDAAHAMHP 292

Query: 291 FAAQGANMAIEDAYALSYLLGK----KTIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHM 346
            A QGAN+A+EDA AL+  L          AA++AY+  R  R + I+  ++    LF  
Sbjct: 293 LAGQGANLALEDAAALAEALAAAPRPGADAAALAAYEARRRPRAEAIQKLSRALGRLFSA 352

Query: 347 H-RPASLFRNAGLRLGIHKPLHKSL 370
               A   RN GLRL    P  +  
Sbjct: 353 DGPFARFLRNLGLRLLDRLPPLREA 377


>gnl|CDD|37825 KOG2614, KOG2614, KOG2614, Kynurenine 3-monooxygenase and related
           flavoprotein monooxygenases [Energy production and
           conversion, General function prediction only].
          Length = 420

 Score =  137 bits (346), Expect = 5e-33
 Identities = 82/347 (23%), Positives = 136/347 (39%), Gaps = 37/347 (10%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDI 61
           I+G GI GL  A +L  +GI   VLE ++     G  I ++ N  R LK IG+ +Q+ + 
Sbjct: 7   IVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAIGLKEQIREQ 66

Query: 62  WIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLH 121
            I     V   G + KE+SR             I  + +R+ LQ++L   + T  + + H
Sbjct: 67  GIPLGGRVLIHGDSGKEVSRILYGEPDEY----ILRINRRNLLQELLAEALPTGTI-KFH 121

Query: 122 LSTHITHPDCTQISKINNQKP-----------DLLVGADGLNSNIRHYIDTQPITFSGDV 170
            S         +I  +  +             DLL+G DG  S +R ++  +   + G  
Sbjct: 122 -SNLSCTSKDVEIETLGKKLVVHLSDGTTVKGDLLIGCDGAYSKVRKWLGFKEPRYDGS- 179

Query: 171 VLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKR 230
             +        P  I F         +  L ++P    + I   F+    T  D +    
Sbjct: 180 --QAYRGLGFIPNGIPFGKKVFAIYGN-GLHSWPRPGFHLIAYWFLDKSLTSTDFAPFDE 236

Query: 231 SEIHKEWFVKHLTNWHQEIIQLILQINDTHL----------YPLFECECKHWHNKKNAVL 280
            E  K+  ++ +  + +    +I    +  +          +PL   +C       N VL
Sbjct: 237 PEKLKKTSLEVVDFFPENFPDIIELTGEESIVRTPLADRPPWPLISVKCS----PGNVVL 292

Query: 281 IGDAAHTLLPFAAQGANMAIEDAYALSYLLGK--KTIPAAISAYQKV 325
           +GDAAH + PF  QG N A ED   L+  L +    +  A   Y + 
Sbjct: 293 LGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAINDVSLAGEEYSRE 339


>gnl|CDD|144912 pfam01494, FAD_binding_3, FAD binding domain.  This domain is
           involved in FAD binding in a number of enzymes.
          Length = 349

 Score = 78.9 bits (195), Expect = 2e-15
 Identities = 62/349 (17%), Positives = 113/349 (32%), Gaps = 74/349 (21%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDI 61
           I+G G +GL LA  L   G++  ++E+    S       ++     +L++ G+ D++   
Sbjct: 6   IVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAGGLNQRTMELLRQAGLEDRILAE 65

Query: 62  WIEPEDFVFRSGSTLK---ELSR-FSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQ---- 113
               E       +T +   +L    S    +      +Y   +   L+ IL  H +    
Sbjct: 66  GAPHEGMGLAFYNTSRRRADLDFLTSPPRVT------VYPQTE---LEPILREHAEARGA 116

Query: 114 -----TQPLARLH----LSTHITHPDCTQISKINNQKPDLLVGADGLNSNIRHYIDTQPI 164
                T+ L+       ++  +      +   +   +   LVG DG  S +R  +    I
Sbjct: 117 QVRFGTEVLSLEQDGDGVTAVVRDRRDGEEYTV---RAKYLVGCDGGRSPVRKQL---GI 170

Query: 165 TFSGDVVLRCLIPQNNAPEFIDFQSVNIFFG--------PDSHLVTYPLREDNTINMVFV 216
            F G              E + F S+++ F           + +        +   MV  
Sbjct: 171 EFEG-------------FEGVPFGSLDVLFDAPDLSDPVERAFVHYLIYAPHSRGFMVGP 217

Query: 217 SSKHTLKDISFLKRSEIHKEWFVKHLTNW-----HQEIIQLILQINDTHLYPLFECECKH 271
                    +   R  +   W    +         +E  Q +       L  +       
Sbjct: 218 WRS------AGRSRYYVQVPWD-PEVEERPEEFTDEEAKQRLRSAVGIDLADVEILWKSI 270

Query: 272 WHNKKNAV---------LIGDAAHTLLPFAAQGANMAIEDAYALSYLLG 311
           W  +             L GDAAH   P   QG N  I+DA+ L++ L 
Sbjct: 271 WGVRSRVATRYRKGRVFLAGDAAHIHPPTGGQGLNTGIQDAFNLAWKLA 319


>gnl|CDD|30989 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
           and conversion].
          Length = 396

 Score = 62.1 bits (150), Expect = 2e-10
 Identities = 70/359 (19%), Positives = 125/359 (34%), Gaps = 38/359 (10%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSD-SGFGIQISPNASRILKRIGILDQLED 60
           I+GAG +G + A  L   G+   VLEK  +       G  +SP A   L    I D  E+
Sbjct: 8   IVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEEL----IPDFDEE 63

Query: 61  IWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARL 120
           I  +              +     + Y          +V R    K L    +    A L
Sbjct: 64  IERKVTGARIYFPGEKVAIEVPVGEGY----------IVDRAKFDKWLAERAEEA-GAEL 112

Query: 121 HLSTHIT----HPDCTQISKINNQ---KPDLLVGADGLNSNIRHYI---DTQPITFSGDV 170
           +  T +T      D   +         +  +++ ADG+NS +   +   D +P  ++  V
Sbjct: 113 YPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGLKDRKPEDYAIGV 172

Query: 171 VLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKR 230
                +P +   E   +  +++  G    +  +PL  D   N+        L D   L  
Sbjct: 173 KEVIEVPDDGDVEEFLYGPLDVGPGGYGWI--FPL-GDGHANVGIGV----LLDDPSLSP 225

Query: 231 SEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLP 290
                E F +H       +   IL+       P      +        +L+GDAA  + P
Sbjct: 226 FLELLERFKEHPAIRKLLLGGKILEYA-AGGIPEGGPASRPLV-GDGVLLVGDAAGFVNP 283

Query: 291 FAAQGANMAIEDAYALSYLL--GKKTIPAAISAYQK-VRAVRVKRIRYRTKLNQLLFHM 346
              +G   AI+     +  +    +    A++ Y++ +R    +      +L +LL  +
Sbjct: 284 LTGEGIRYAIKSGKLAAEAIAEALEGGEEALAEYERLLRKSLAREDLKSLRLLKLLLRL 342


>gnl|CDD|39059 KOG3855, KOG3855, KOG3855, Monooxygenase involved in coenzyme Q
           (ubiquinone) biosynthesis [Coenzyme transport and
           metabolism, Energy production and conversion].
          Length = 481

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 82/431 (19%), Positives = 140/431 (32%), Gaps = 79/431 (18%)

Query: 1   MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFG----------------IQISPN 44
           +I+G G  GL LAA+LG         +KK  L D+G                    ISP 
Sbjct: 40  VIVGGGPVGLALAAALGS---NPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPA 96

Query: 45  ASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTL 104
           +  + K IG  D +     +    +    S    L  F   N   +    +  +++   +
Sbjct: 97  SISLFKSIGAWDHIFHDRYQKFSRMLVWDSCSAALILFDHDNVGID----MAFIIENDNI 152

Query: 105 QKILLNHIQTQPLARLHLSTHITHPDCTQISKINNQKP----------------DLLVGA 148
           Q  L N         + +       DCT    +                     DLL+GA
Sbjct: 153 QCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLTDGINFATDLLIGA 212

Query: 149 DGLNSNIRHYIDTQPITFS-------GDVVLRCLIPQNN--APEFIDFQSVNIFFGPD-- 197
           DG NS +R   +    +++         + L      N      F+    + +    D  
Sbjct: 213 DGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLPTGPIALLPLSDTL 272

Query: 198 ------------SHLVTYPLRE-DNTINMVFVSSKHTLK-----DISFLKRSEIHKEWFV 239
                       S L + P     + +N  F S           D +   R+++ +    
Sbjct: 273 SSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLN 332

Query: 240 KHLTNWHQEIIQLILQINDTHLYPLFECECKHWHN--KKNAVLIGDAAHTLLPFAAQGAN 297
                 +Q+    + ++ D      F     H          LIGDAAH + P A QG N
Sbjct: 333 TSKRLANQQYPPSVFEVGDK-SRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVN 391

Query: 298 MAIEDAYALSYLLGKKTIPAA-ISAYQKVRAVRVKRIRYRTKLNQLLFHMHR-------P 349
           +   D   L   L +  +    + + + +     +R+++   L   +  +H+       P
Sbjct: 392 LGFSDVKILVDSLSEAIVSGLDLGSVEHLEPYERERLQHNYVLLGAVDKLHKLYATSAPP 451

Query: 350 ASLFRNAGLRL 360
             L R  GL+L
Sbjct: 452 VVLLRTFGLQL 462


>gnl|CDD|36512 KOG1298, KOG1298, KOG1298, Squalene monooxygenase [Lipid transport
           and metabolism].
          Length = 509

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 1   MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60
           +I+GAG++G  LA +L   G +  V+E+     D   G  + P     L ++G+ D +E 
Sbjct: 49  IIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEG 108

Query: 61  I 61
           I
Sbjct: 109 I 109


>gnl|CDD|31426 COG1233, COG1233, Phytoene dehydrogenase and related proteins
           [Secondary metabolites biosynthesis, transport, and
           catabolism].
          Length = 487

 Score = 41.2 bits (96), Expect = 5e-04
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 15/95 (15%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLEKKDQL-------------SDSGFGIQISPNASRI 48
           +IGAG++GL  AA L   G++  VLEK D++              D+G    + P+   +
Sbjct: 8   VIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLMPDPGPL 67

Query: 49  LKRIGILDQ--LEDIWIEPEDFVFRSGSTLKELSR 81
            + +G LD   L+ +  +P   VF       ++  
Sbjct: 68  FRELGNLDADGLDLLPPDPAYRVFLPDGDAIDVYT 102


>gnl|CDD|144747 pfam01266, DAO, FAD dependent oxidoreductase.  This family
          includes various FAD dependent oxidoreductases:
          Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
          Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
          oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
          Length = 309

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKKD 30
          +IG GI GL+ A  L  RG+   +LE+ D
Sbjct: 4  VIGGGIVGLSTAYELARRGLSVTLLERGD 32


>gnl|CDD|31009 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
           acid transport and metabolism].
          Length = 387

 Score = 36.8 bits (84), Expect = 0.010
 Identities = 26/125 (20%), Positives = 38/125 (30%), Gaps = 8/125 (6%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLEKKDQL----SDSGFGIQISPNASRILKRIGILDQ 57
           IIG GI GL+ A  L  RG    VLE  +        +  GI ++P AS   +       
Sbjct: 9   IIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGRNAGGI-LAPWASPGGELEVRP-- 65

Query: 58  LEDIWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPL 117
           L D+ +     +     T   L R           G            ++       + L
Sbjct: 66  LADLSLALWRELSEELGTGAGLRR-RGLLDLAAREGLKGLAQLERLAAELEAAGEDAELL 124

Query: 118 ARLHL 122
                
Sbjct: 125 DAAEA 129


>gnl|CDD|35252 KOG0029, KOG0029, KOG0029, Amine oxidase [Secondary metabolites
          biosynthesis, transport and catabolism].
          Length = 501

 Score = 36.5 bits (84), Expect = 0.011
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32
          +IGAG++GL+ A  L   G    VLE +D++
Sbjct: 20 VIGAGLAGLSAARQLQDFGFDVLVLEARDRV 50


>gnl|CDD|31822 COG1635, THI4, Flavoprotein involved in thiazole biosynthesis
          [Coenzyme metabolism].
          Length = 262

 Score = 36.0 bits (83), Expect = 0.018
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 7/60 (11%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFG-------IQISPNASRILKRIGI 54
          I+GAG SGLT A  L   G++  + E+K       +G       I +   A  IL   GI
Sbjct: 35 IVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGI 94


>gnl|CDD|30795 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
           [General function prediction only].
          Length = 415

 Score = 35.3 bits (80), Expect = 0.028
 Identities = 13/53 (24%), Positives = 28/53 (52%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGI 54
           ++GAG  GL  A +   RG +  ++E  D+L       +++   + +L++ G+
Sbjct: 141 VVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGV 193


>gnl|CDD|144475 pfam00890, FAD_binding_2, FAD binding domain.  This family
          includes members that bind FAD. This family includes
          the flavoprotein subunits from succinate and fumarate
          dehydrogenase, aspartate oxidase and the alpha subunit
          of adenylylsulphate reductase.
          Length = 401

 Score = 34.6 bits (80), Expect = 0.042
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEK 28
          +IG+G++GL  A      G++  V+EK
Sbjct: 4  VIGSGLAGLAAALEAAEAGLKVAVVEK 30


>gnl|CDD|145231 pfam01946, Thi4, Thi4 family.  This family includes a putative
          thiamine biosynthetic enzyme.
          Length = 229

 Score = 34.7 bits (80), Expect = 0.042
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKK 29
          I+GAG SGLT A  L  +G++  ++E+ 
Sbjct: 22 IVGAGPSGLTAAYYLAKKGLKVAIIERS 49


>gnl|CDD|32255 COG2072, TrkA, Predicted flavoprotein involved in K+ transport
          [Inorganic ion transport and metabolism].
          Length = 443

 Score = 34.3 bits (78), Expect = 0.051
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 2  IIGAGISGLTLAASLGHRGIQS-CVLEKKDQLSDS 35
          IIGAG SGL  A +L   G+    + EK+D +  +
Sbjct: 13 IIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGT 47


>gnl|CDD|36497 KOG1283, KOG1283, KOG1283, Serine carboxypeptidases
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 414

 Score = 33.9 bits (77), Expect = 0.071
 Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 21/67 (31%)

Query: 58  LEDIWIEPEDFVFRSGSTLKELSRF-------------SCKNY--------SRNNWGGIY 96
           L D WI PEDFVF  G  LK +SR                K          +   WGG  
Sbjct: 161 LGDSWISPEDFVFSWGPLLKHVSRLDDNGLDSSNSGAEKGKGGVDGGKWGGATGGWGGGE 220

Query: 97  GVVKRHT 103
            ++ R +
Sbjct: 221 NLISRES 227


>gnl|CDD|30923 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy
          production and conversion].
          Length = 532

 Score = 33.7 bits (77), Expect = 0.084
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKKD 30
          +IG GI+G  +A     RG++  ++EK D
Sbjct: 17 VIGGGITGAGIARDAAGRGLKVALVEKGD 45


>gnl|CDD|31443 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and
           conversion].
          Length = 793

 Score = 33.3 bits (76), Expect = 0.11
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKR 51
           +IG G+ GL  A  L   G++  V+     L +     Q+   A R+L+R
Sbjct: 150 VIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMER----QLDRTAGRLLRR 195


>gnl|CDD|31425 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism].
          Length = 444

 Score = 33.4 bits (76), Expect = 0.12
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 10/74 (13%)

Query: 2  IIGAGISGLTLAASLGHRG--IQSCVLEKKDQL-------SDSGFGIQISPNASRILKRI 52
          IIG GI+GL+ A  L   G  ++  + E  D++          GF  +  P+     K  
Sbjct: 5  IIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEE 64

Query: 53 GILDQLEDIWIEPE 66
           ILD ++++ +E +
Sbjct: 65 -ILDLIKELGLEDK 77


>gnl|CDD|33375 COG3573, COG3573, Predicted oxidoreductase [General function
          prediction only].
          Length = 552

 Score = 33.0 bits (75), Expect = 0.12
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 21/85 (24%)

Query: 1  MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSG-----FG---IQISPNASRILKRI 52
          +++GAG++GL  AA L   G +  +L+++ + +  G     FG   +  SP      +R+
Sbjct: 9  IVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAFWSFGGLFLVDSPEQ----RRL 64

Query: 53 GILDQLE---DIWI------EPEDF 68
          GI D L+     W        PED 
Sbjct: 65 GIRDSLDLARQDWFGTAAFDRPEDH 89


>gnl|CDD|31342 COG1148, HdrA, Heterodisulfide reductase, subunit A and related
           polyferredoxins [Energy production and conversion].
          Length = 622

 Score = 32.2 bits (73), Expect = 0.26
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 1   MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33
           ++IG G++G+T A  L   G +  ++EK+  + 
Sbjct: 128 LVIGGGVAGITAALELADMGFKVYLVEKEPSIG 160


>gnl|CDD|36613 KOG1399, KOG1399, KOG1399, Flavin-containing monooxygenase
          [Secondary metabolites biosynthesis, transport and
          catabolism].
          Length = 448

 Score = 31.9 bits (72), Expect = 0.30
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33
          +IGAG +GL  A  L   G +  V E+ D + 
Sbjct: 11 VIGAGPAGLAAARELLREGHEVVVFERTDDIG 42


>gnl|CDD|32458 COG2303, BetA, Choline dehydrogenase and related flavoproteins
          [Amino acid transport and metabolism].
          Length = 542

 Score = 31.6 bits (71), Expect = 0.34
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 1  MIIGAGISGLTLAASLGHRGIQSCVLE 27
          +I+G+G +G  LAA L   G+   VLE
Sbjct: 11 VIVGSGSAGSVLAARLSDAGLSVLVLE 37


>gnl|CDD|143852 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide
          oxidoreductase.  This family includes both class I and
          class II oxidoreductases and also NADH oxidases and
          peroxidases. This domain is actually a small NADH
          binding domain within a larger FAD binding domain.
          Length = 82

 Score = 31.8 bits (73), Expect = 0.35
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGI 54
          ++G G  GL  A++L   G +  V+E++D+L   GF  +I+      L++ GI
Sbjct: 4  VVGGGYIGLEFASALAKLGSKVTVVERRDRLL-RGFDEEIAKILQEKLEKNGI 55


>gnl|CDD|38055 KOG2844, KOG2844, KOG2844, Dimethylglycine dehydrogenase
          precursor [Amino acid transport and metabolism].
          Length = 856

 Score = 31.1 bits (70), Expect = 0.48
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 1  MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS 33
          ++IG G  G + A  L  RG++  VL ++ +L+
Sbjct: 43 VVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLT 75


>gnl|CDD|31424 COG1231, COG1231, Monoamine oxidase [Amino acid transport and
          metabolism].
          Length = 450

 Score = 31.1 bits (70), Expect = 0.49
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32
          I+GAG++GL+ A  L   G Q  +LE +D++
Sbjct: 12 IVGAGLAGLSAAYELKKAGYQVQILEARDRV 42


>gnl|CDD|30924 COG0579, COG0579, Predicted dehydrogenase [General function
          prediction only].
          Length = 429

 Score = 31.0 bits (70), Expect = 0.51
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 1  MIIGAGISGLTLAASLGHRGIQS--CVLEKKDQLSD 34
          +IIG GI G   A  L          +LEK+D ++ 
Sbjct: 7  VIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQ 42


>gnl|CDD|146239 pfam03486, HI0933_like, HI0933-like protein. 
          Length = 405

 Score = 30.6 bits (70), Expect = 0.65
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32
          +IG G +GL  A S   RG +  ++EK  +L
Sbjct: 5  VIGGGAAGLMAAISAAKRGRRVLLIEKGKKL 35


>gnl|CDD|113586 pfam04820, Trp_halogenase, Tryptophan halogenase.  Tryptophan
           halogenase catalyses the chlorination of tryptophan to
           form 7-chlorotryptophan. This is the first step in the
           biosynthesis of pyrrolnitrin, an antibiotic with
           broad-spectrum anti-fungal activity. Tryptophan
           halogenase is NADH-dependent.
          Length = 457

 Score = 30.8 bits (70), Expect = 0.66
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 272 WHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKKTI-PAAISAYQKVRAVRV 330
           W   KN V +G A+  L P  +   ++       L  L       PAAI+ Y +  A   
Sbjct: 317 WV--KNVVALGLASGFLEPLESTSIHLIQSALRRLLALFPDGGFDPAAIAEYNRRIAREY 374

Query: 331 KRIR 334
           +RIR
Sbjct: 375 ERIR 378


>gnl|CDD|36549 KOG1335, KOG1335, KOG1335, Dihydrolipoamide dehydrogenase [Energy
           production and conversion].
          Length = 506

 Score = 30.7 bits (69), Expect = 0.66
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGI 54
           +IGAG  GL + +     G +  V+E  DQ+       +IS    R+L++ GI
Sbjct: 216 VIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIG-GVMDGEISKAFQRVLQKQGI 267


>gnl|CDD|32264 COG2081, COG2081, Predicted flavoproteins [General function
          prediction only].
          Length = 408

 Score = 30.5 bits (69), Expect = 0.79
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32
          IIG G +GL  A S    G +  +++K  +L
Sbjct: 8  IIGGGPAGLMAAISAAKAGRRVLLIDKGPKL 38


>gnl|CDD|30838 COG0492, TrxB, Thioredoxin reductase [Posttranslational
          modification, protein turnover, chaperones].
          Length = 305

 Score = 30.6 bits (69), Expect = 0.80
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32
          IIG G +GLT A      G++  ++ +  + 
Sbjct: 8  IIGGGPAGLTAAIYAARAGLKVVLILEGGEP 38


>gnl|CDD|33187 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase
          [General function prediction only].
          Length = 331

 Score = 29.6 bits (66), Expect = 1.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEK 28
          I+GAGI+GL  A +L   G +  V EK
Sbjct: 6  IVGAGIAGLAAAYALREAGREVTVFEK 32


>gnl|CDD|31253 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
          flavoprotein subunit [Energy production and
          conversion].
          Length = 562

 Score = 29.6 bits (66), Expect = 1.7
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEK 28
          +IG G +GL  A      G++  +L K
Sbjct: 11 VIGGGGAGLRAAIEAAEAGLKVALLSK 37


>gnl|CDD|112814 pfam04015, DUF362, Domain of unknown function (DUF362).  Sometimes
           present in iron-sulphur proteins.
          Length = 262

 Score = 29.0 bits (65), Expect = 1.9
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 5/35 (14%)

Query: 35  SGFGIQISPNASRILKRIGILDQLEDIWIEPEDFV 69
            GFG     NAS +LK +GILD   ++ I   +F 
Sbjct: 81  PGFG-----NASAVLKTMGILDLARELDITVVEFD 110


>gnl|CDD|39455 KOG4254, KOG4254, KOG4254, Phytoene desaturase [Coenzyme
          transport and metabolism].
          Length = 561

 Score = 29.2 bits (65), Expect = 2.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKK 29
          +IG G +GLT AA L   G    VLE++
Sbjct: 19 VIGGGHNGLTAAAYLARYGQSVAVLERR 46


>gnl|CDD|30908 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope
          biogenesis, outer membrane].
          Length = 374

 Score = 29.1 bits (65), Expect = 2.2
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 1  MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32
          +I+GAG+SG  +A      G +  ++EK++ +
Sbjct: 5  LIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHI 36


>gnl|CDD|30839 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and
           related oxidoreductases [Amino acid transport and
           metabolism / General function prediction only].
          Length = 457

 Score = 29.1 bits (65), Expect = 2.3
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 12/63 (19%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSG---FGI-------QISPNASRILKR 51
           +IGAG +GL  A  L   G    V E+     D G   +GI        I      +L+R
Sbjct: 128 VIGAGPAGLAAADDLSRAGHDVTVFERVAL--DGGLLLYGIPDFKLPKDILDRRLELLER 185

Query: 52  IGI 54
            G+
Sbjct: 186 SGV 188


>gnl|CDD|30379 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism].
          Length = 518

 Score = 29.1 bits (65), Expect = 2.3
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31
          IIG+G++GLT A SL     +  VL K   
Sbjct: 12 IIGSGLAGLTAALSL-APSFRVTVLTKGPL 40


>gnl|CDD|33157 COG3349, COG3349, Uncharacterized conserved protein [Function
          unknown].
          Length = 485

 Score = 28.7 bits (64), Expect = 2.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32
          I GAG++GL  A  L   G    + E +D+L
Sbjct: 5  IAGAGLAGLAAAYELADAGYDVTLYEARDRL 35


>gnl|CDD|32731 COG2907, COG2907, Predicted NAD/FAD-binding protein [General
          function prediction only].
          Length = 447

 Score = 28.4 bits (63), Expect = 3.4
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 21/73 (28%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKKDQLS-----------------DSGFGIQIS-- 42
          +IG+GISGL+ A  L  R     + E   +L                  D+GF +     
Sbjct: 13 VIGSGISGLSAAWLLSRRH-DVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERT 71

Query: 43 -PNASRILKRIGI 54
           PN +R+ K IG+
Sbjct: 72 YPNLTRLFKTIGV 84


>gnl|CDD|146385 pfam03721, UDPG_MGDP_dh_N, UDP-glucose/GDP-mannose dehydrogenase
          family, NAD binding domain.  The
          UDP-glucose/GDP-mannose dehydrogenaseses are a small
          group of enzymes which possesses the ability to
          catalyse the NAD-dependent 2-fold oxidation of an
          alcohol to an acid without the release of an aldehyde
          intermediate.
          Length = 185

 Score = 28.0 bits (63), Expect = 4.1
 Identities = 8/21 (38%), Positives = 9/21 (42%)

Query: 2  IIGAGISGLTLAASLGHRGIQ 22
          +IG G  GL  A  L   G  
Sbjct: 5  VIGLGYVGLPTAVCLAEIGHD 25


>gnl|CDD|35904 KOG0685, KOG0685, KOG0685, Flavin-containing amine oxidase
          [Coenzyme transport and metabolism].
          Length = 498

 Score = 28.0 bits (62), Expect = 5.0
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 2  IIGAGISGLTLAASLGHRGIQSC-VLEKKDQL 32
          IIGAGI+GL  A  L   G     +LE  D++
Sbjct: 26 IIGAGIAGLAAATRLLENGFIDVLILEASDRI 57


>gnl|CDD|40000 KOG4803, KOG4803, KOG4803, Uncharacterized conserved protein
           [Function unknown].
          Length = 610

 Score = 27.3 bits (60), Expect = 6.4
 Identities = 27/119 (22%), Positives = 44/119 (36%), Gaps = 20/119 (16%)

Query: 37  FGIQISPNASRILKRIGILDQLEDIWIEPEDFVFRSGS-TLKELSR---------FSCKN 86
             IQ   + S ++ R  IL+   DI    ED V R+    L +L+           S K+
Sbjct: 296 EPIQTMTDVSGLIGRYSILNAEFDI----EDVVQRAEVRQLTDLTDKVWELVKCCHSVKD 351

Query: 87  ---YSRNNWGGI-YGVVKRHTLQKILLNHIQTQPLARLHLSTHITHPDCTQISKINNQK 141
              +S          ++   T +  L   I +  LARL +           +S+I  +K
Sbjct: 352 LIAFSMLFQCAARCNIINTPTNKNRLAKIITS--LARLAMPCLSGAEPLELLSEIGLEK 408


>gnl|CDD|38031 KOG2820, KOG2820, KOG2820, FAD-dependent oxidoreductase [General
          function prediction only].
          Length = 399

 Score = 27.2 bits (60), Expect = 7.3
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILK 50
          I+GAG+ GL+ A  L  RG +  +LE+       G     S   SRI++
Sbjct: 12 IVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRG----SSHGISRIIR 56


>gnl|CDD|36355 KOG1140, KOG1140, KOG1140, N-end rule pathway, recognition component
            UBR1 [Posttranslational modification, protein turnover,
            chaperones].
          Length = 1738

 Score = 27.2 bits (60), Expect = 7.6
 Identities = 31/116 (26%), Positives = 40/116 (34%), Gaps = 10/116 (8%)

Query: 94   GIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHPD-CTQISKINNQKPDLLVGADGLN 152
            GI   ++R  L K LLN++     A L  S++      CT +S  N Q   L    D L 
Sbjct: 1492 GILSFLRRAALFKHLLNNVFPPFGAFLDPSSNSELEHLCTYLSLPNLQACLLQSSGDELR 1551

Query: 153  SNIRHYIDTQPITFSGDVVLRCLIPQNNAP----EFIDFQSVNI-----FFGPDSH 199
              I  +          +  L  L      P    E  D  S  I     FF P S 
Sbjct: 1552 QAIERWCGGTENLKREEHYLNTLSINPRIPNSLVELPDEYSCLINSASFFFCPKSG 1607


>gnl|CDD|31444 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy
           production and conversion].
          Length = 405

 Score = 27.1 bits (60), Expect = 8.9
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRIL 49
           I+G G +G+ LA  L  R  +   L KK ++  S   + +     RIL
Sbjct: 160 IVGGGPTGVELAGELAERLHR---LLKKFRVDPSELRVILVEAGPRIL 204


>gnl|CDD|31441 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
           dihydrolipoamide dehydrogenase (E3) component, and
           related enzymes [Energy production and conversion].
          Length = 454

 Score = 27.1 bits (60), Expect = 9.3
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGI 54
           I+G G  GL  A+     G +  V+E+ D++   G   +IS   ++ L++ G+
Sbjct: 178 IVGGGYIGLEFASVFAALGSKVTVVERGDRIL-PGEDPEISKELTKQLEKGGV 229


>gnl|CDD|35549 KOG0328, KOG0328, KOG0328, Predicted ATP-dependent RNA helicase
           FAL1, involved in rRNA maturation, DEAD-box superfamily
           [Translation, ribosomal structure and biogenesis].
          Length = 400

 Score = 26.8 bits (59), Expect = 9.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 15  SLGHRGIQSCVLEKKDQLSDSGFGIQI 41
           SL  R ++  VL++ D++ + GF  QI
Sbjct: 164 SLRTRAVKMLVLDEADEMLNKGFKEQI 190


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.323    0.138    0.424 

Gapped
Lambda     K      H
   0.267   0.0719    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,736,197
Number of extensions: 253371
Number of successful extensions: 672
Number of sequences better than 10.0: 1
Number of HSP's gapped: 660
Number of HSP's successfully gapped: 54
Length of query: 380
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 285
Effective length of database: 4,210,882
Effective search space: 1200101370
Effective search space used: 1200101370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.1 bits)