RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780168|ref|YP_003064581.1| monooxygenase FAD-binding
protein [Candidatus Liberibacter asiaticus str. psy62]
         (380 letters)



>gnl|CDD|180582 PRK06475, PRK06475, salicylate hydroxylase; Provisional.
          Length = 400

 Score =  221 bits (564), Expect = 3e-58
 Identities = 105/390 (26%), Positives = 179/390 (45%), Gaps = 17/390 (4%)

Query: 1   MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60
           +I GAG++GL+ A  L  RG    ++EK  +LS+ G G+Q++PNA R L+R+G+ D+L  
Sbjct: 6   LIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSG 65

Query: 61  IWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARL 120
             + P+      G   + L      + +R  W   Y V  R  LQ  LL+  +  P   +
Sbjct: 66  TGVTPKALYLMDGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEI 125

Query: 121 HLSTHITHPDCTQIS-KINNQKPD--------LLVGADGLNSNIRHYIDTQPITFSGDVV 171
            L   +T    T  S      + +         L+  DG+ S +R         FSG + 
Sbjct: 126 KLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSMLRAKAGFSKARFSGHIA 185

Query: 172 LRCLIPQNNAPE-----FIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDIS 226
            R  +  +  P        + ++V+ + G  +H + YP++     N V ++      ++ 
Sbjct: 186 WRTTLAADALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNFVAITGGENPGEVW 245

Query: 227 FLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAH 286
                + H +       +W++ ++Q++  I++   +PLFE     +      + +GDA+H
Sbjct: 246 SKTGDKAHLKSIYA---DWNKPVLQILAAIDEWTYWPLFEMADAQFVGPDRTIFLGDASH 302

Query: 287 TLLPFAAQGANMAIEDAYALSYLLGKKTIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHM 346
            + PFAAQGA MAIEDA AL+  L      A +  +  VR  R+  +  R +LN+  +H 
Sbjct: 303 AVTPFAAQGAAMAIEDAAALAEALDSDDQSAGLKRFDSVRKERIAAVAKRGQLNRFAYHA 362

Query: 347 HRPASLFRNAGLRLGIHKPLHKSLDWIYQY 376
               +L RN    +   +   K LDW+Y Y
Sbjct: 363 TGIFALGRNMLFAIRSPESFLKDLDWLYGY 392


>gnl|CDD|181262 PRK08163, PRK08163, salicylate hydroxylase; Provisional.
          Length = 396

 Score =  169 bits (429), Expect = 1e-42
 Identities = 104/400 (26%), Positives = 174/400 (43%), Gaps = 37/400 (9%)

Query: 1   MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60
           +I+G GI GL  A +L  +GI+  +LE+  ++ + G GIQ+ PNA   L  +G+ +    
Sbjct: 8   LIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQ 67

Query: 61  IWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARL 120
             +  +          +E+ R       R  +G  Y V+ R  +   LL  +   PL   
Sbjct: 68  RAVFTDHLTMMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEF 127

Query: 121 HLSTHIT--HPDCTQISKINNQ----KPDLLVGADGLNSNIR-HYIDTQPITFSGDVVLR 173
             STH+     D   ++  + Q      D L+G DG+ S +R   +   P   +G VV R
Sbjct: 128 RTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSVVRQSLVGDAP-RVTGHVVYR 186

Query: 174 CLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKRSEI 233
            +I  ++ PE +   +  ++ GP  HLV YPLR     N+V          ++F  R + 
Sbjct: 187 AVIDVDDMPEDLRINAPVLWAGPHCHLVHYPLRGGEQYNLV----------VTFHSREQ- 235

Query: 234 HKEWFVKHLTNWHQEII-----------QLILQINDTHLYPLFECE-CKHWHNKKNAVLI 281
            +EW VK  +   +E++           Q++ +      +   + E    W   +   L+
Sbjct: 236 -EEWGVKDGSK--EEVLSYFEGIHPRPRQMLDKPTSWKRWATADREPVAKWSTGR-VTLL 291

Query: 282 GDAAHTLLPFAAQGANMAIEDAYALSYLLGK--KTIPAAISAYQKVRAVRVKRIRYRTKL 339
           GDAAH +  + AQGA MA+EDA  L   L        AA + Y+ VR  R  R+    + 
Sbjct: 292 GDAAHPMTQYMAQGACMALEDAVTLGKALEGCDGDAEAAFALYESVRIPRTARVVLSARE 351

Query: 340 NQLLFHMHRPASLFRNAGLRLGIHKPLHKSLDWIYQYKIP 379
              ++H        RN   +    +  + +L+W+Y +K  
Sbjct: 352 MGRIYHAKGVERQVRNLLWKGRTQEQFYDALEWLYGWKED 391


>gnl|CDD|180727 PRK06847, PRK06847, hypothetical protein; Provisional.
          Length = 375

 Score =  127 bits (321), Expect = 5e-30
 Identities = 96/363 (26%), Positives = 148/363 (40%), Gaps = 62/363 (17%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDI 61
           I+G GI GL+ A +L   GI   ++E   +    G GI +  NA R L+ +G+LD+  + 
Sbjct: 9   IVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEA 68

Query: 62  WIEPEDFVFR--SGSTLKELS--RFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPL 117
               +        G+ L EL   R +  +       GI     R  L +IL +  +    
Sbjct: 69  GFGFDGVDLFDPDGTLLAELPTPRLAGDDLPGGG--GIM----RPALARILADAAR-AAG 121

Query: 118 ARLHLSTHITHPD---------CTQISKINNQKPDLLVGADGLNSNIRHYI---DTQPIT 165
           A + L T +T  +          +  +     + DL+VGADGL S +R  +   + +P  
Sbjct: 122 ADVRLGTTVTAIEQDDDGVTVTFSDGTT---GRYDLVVGADGLYSKVRSLVFPDEPEP-E 177

Query: 166 FSGDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTY-PLREDNTINM-VFVSSKHTLK 223
           ++G  V R ++P+    E        + +   +      PL ED    M +FV+      
Sbjct: 178 YTGQGVWRAVLPR--PAEVDRS----LMYLGPTTKAGVVPLSED---LMYLFVTEPRP-- 226

Query: 224 DISFLKRSEIHKEWFVKHLTNW-----HQEIIQLILQINDTH--LYPLFECECKH----- 271
                    I  +     L           + +L  QI D    +Y   E          
Sbjct: 227 -----DNPRIEPDTLAALLRELLAPFGGPVLQELREQITDDAQVVYRPLE---TLLVPAP 278

Query: 272 WHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKK-TIPAAISAYQKVRAVRV 330
           WH +   VLIGDAAH   P  AQGA MAIEDA  L+  L +  ++ AA+ AY   R  R 
Sbjct: 279 WH-RGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELARHDSLEAALQAYYARRWERC 337

Query: 331 KRI 333
           + +
Sbjct: 338 RMV 340


>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional.
          Length = 373

 Score =  109 bits (274), Expect = 1e-24
 Identities = 84/396 (21%), Positives = 154/396 (38%), Gaps = 46/396 (11%)

Query: 1   MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60
            IIGAGI GLT AA L  +G +  V EK + + + G GI I  N  + L    +   +++
Sbjct: 4   AIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKN 63

Query: 61  IWIEPEDFVFRS--GSTLKELSR-FSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPL 117
                         G+ L ++    +  N +          + R TL  I+ ++++   +
Sbjct: 64  AGQILSTMNLLDDKGTLLNKVKLKSNTLNVT----------LHRQTLIDIIKSYVKEDAI 113

Query: 118 ARLHLSTHITHPDCTQISKINNQ---KPDLLVGADGLNSNIRHYIDTQP-ITFSGDVVLR 173
                 T I +          +      DL +GADG++S +R  ++    + + G    R
Sbjct: 114 FTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKVRQSVNADSKVRYQGYTCFR 173

Query: 174 CLIPQ---NNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKR 230
            LI            ++      FG        PL  +     + +++K   +D  +   
Sbjct: 174 GLIDDIDLKLPDCAKEYWGTKGRFG------IVPLLNNQAYWFITINAKE--RDPKY--- 222

Query: 231 SEIHKEWFVKHLTNWHQEIIQLILQINDTH--------LYPLFECECKHWHNKKNAVLIG 282
           S   K     +  ++  E+ +++ + ++T         L PL     K +      VL+G
Sbjct: 223 SSFGKPHLQAYFNHYPNEVREILDKQSETGILHHDIYDLKPL-----KSFVY-GRIVLLG 276

Query: 283 DAAHTLLPFAAQGANMAIEDAYALSYLLGKKTIPAAISAYQKVRAVRVKRIRYRT-KLNQ 341
           DAAH   P   QGA  A+EDA  L+  L       A+  Y K+R     ++  R+ K+ +
Sbjct: 277 DAAHATTPNMGQGAGQAMEDAIVLANCLNAYDFEKALQRYDKIRVKHTAKVIKRSRKIGK 336

Query: 342 LLFHMHRPASLFRNAGLRLGIHKPLHKSLDWIYQYK 377
           +     +     RN  ++   +        ++Y+ K
Sbjct: 337 IAQIESKLLVALRNRVMKRMPNALAAGQTKFLYKSK 372


>gnl|CDD|132263 TIGR03219, salicylate_mono, salicylate 1-monooxygenase.  Members of
           this protein family are salicylate 1-monooxygenase, also
           called salicylate hydroxylase. This enzyme converts
           salicylate to catechol, which is a common intermediate
           in the degradation of a number of aromatic compounds
           (phenol, toluene, benzoate, etc.). The gene for this
           protein may occur in catechol degradation genes, such as
           those of the meta-cleavage pathway.
          Length = 414

 Score =  109 bits (274), Expect = 1e-24
 Identities = 102/415 (24%), Positives = 166/415 (40%), Gaps = 58/415 (13%)

Query: 2   IIGAGISGLTLAASL-GHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQ--- 57
           IIG GI+G+ LA +L  H  +   + E      + G G+    NA R +  +G+ +    
Sbjct: 5   IIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQ 64

Query: 58  --------LEDIWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILL 109
                    +DIW E     +R+GS    L         +++       V R      LL
Sbjct: 65  VADSTPAPWQDIWFE-----WRNGSDASYLGATIAPGVGQSS-------VHRADFLDALL 112

Query: 110 NHI-QTQPLARLHLSTHITHPDCTQISKINNQ--KPDLLVGADGLNSNIRHYI------D 160
            H+ +         +      +  Q+   +    + DLL+GADG+ S +R Y+       
Sbjct: 113 KHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSALRDYVLQGQGQA 172

Query: 161 TQPITFSGDVVLRCLIPQNNAPEFIDFQSVN--------IFFGPDSHLVTYPLREDNTIN 212
                FSG    R L+      E      ++        ++ G D H++T+P+R+   IN
Sbjct: 173 PVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYLGLDGHILTFPVRQGRLIN 232

Query: 213 MV-FVSSKHTLK-----DISFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFE 266
           +V F+S +   K     D  +++  E  +   +     W      L+  I    L+ L +
Sbjct: 233 VVAFISDRSQPKPTWPSDTPWVR--EATQREMLDAFAGWGDAARALLECIPAPTLWALHD 290

Query: 267 CECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGK-----KTIPAAISA 321
                 +      LIGDAAH +LP    GA   +EDAY L+ LLG        +PA + A
Sbjct: 291 LAELPGYVHGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAGDLPALLEA 350

Query: 322 YQKVRAVRVKRIRYRTKLNQLLFHMHRPASLFRNAGLRLGIHKPLHKSLDWIYQY 376
           Y  VR  R  R++  ++    L+ +  PA         LG H  L    DW++ +
Sbjct: 351 YDDVRRPRACRVQRTSREAGELYELRDPAVGADEE--LLGAH--LATRFDWLWNH 401


>gnl|CDD|162642 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase,
           UbiH/UbiF/VisC/COQ6 family.  This model represents a
           family of FAD-dependent hydroxylases (monooxygenases)
           which are all believed to act in the aerobic ubiquinone
           biosynthesis pathway. A separate set of hydroxylases, as
           yet undiscovered, are believed to be active under
           anaerobic conditions. In E. coli three enzyme activities
           have been described, UbiB (which acts first at position
           6, see TIGR01982), UbiH (which acts at position 4, ) and
           UbiF (which acts at position 5). UbiH and UbiF are
           similar to one another and form the basis of this
           subfamily. Interestingly, E. coli contains another
           hydroxylase gene, called visC, that is highly similar to
           UbiF, adjacent to UbiH and, when mutated, results in a
           phenotype similar to that of UbiH (which has also been
           named visB). Several other species appear to have three
           homologs in this family, although they assort themselves
           differently on phylogenetic trees (e.g. Xylella and
           Mesorhizobium) making it difficult to ascribe a specific
           activity to each one. Eukaryotes appear to have only a
           single homolog in this subfamily (COQ6) which
           complements UbiH, but also possess a non-orthologous
           gene, COQ7 which complements UbiF.
          Length = 385

 Score =  106 bits (268), Expect = 8e-24
 Identities = 105/401 (26%), Positives = 159/401 (39%), Gaps = 58/401 (14%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLEKKD--QLSDSGFGIQ---ISPNASRILKRIGILD 56
           I+G G+ GL LA +L   G++  ++E       +  GF  +   +S  + R+L+++G+ D
Sbjct: 4   IVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWD 63

Query: 57  QLEDIWIEP-ED-FVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQT 114
           ++E    +P  D  V   GS       F          G  Y VV+   LQ+ L   +Q 
Sbjct: 64  KIEPDRAQPIRDIHVSDGGSFGA--LHFDADEIGLEALG--Y-VVENRVLQQALWERLQE 118

Query: 115 QPLARLH----LSTHITHPDCTQISKINNQ--KPDLLVGADGLNSNIRH--YIDTQ--PI 164
            P   L     +     H D  +++  + Q  +  LLVGADG NS +R    I T     
Sbjct: 119 YPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANSKVRQLAGIPTTGWDY 178

Query: 165 TFSGDV-VLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKH--- 220
             S  V  ++   P         ++     F P   L   PL  DN  ++V+        
Sbjct: 179 GQSAVVANVKHERPHQG----TAWE----RFTPTGPLALLPL-PDNRSSLVWTLPPEEAE 229

Query: 221 TLKDISFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHN--KKNA 278
            L  +S         E F+  L       +  I  + + H +PL      H         
Sbjct: 230 RLLALSD--------EEFLAELQRAFGSRLGAITLVGERHAFPL---SLTHAKRYVAPRL 278

Query: 279 VLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGK-----KTI--PAAISAYQKVRAV-RV 330
            LIGDAAHT+ P A QG N+ + D  AL+ +L       + I  P  +  Y++ R     
Sbjct: 279 ALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFDNA 338

Query: 331 KRIRYRTKLNQLLFHMH-RPASLFRNAGLRLGIHKPLHKSL 370
             +     LN+ LF     P  L RN GLRL    P  K+ 
Sbjct: 339 AMLGATDGLNR-LFSNDFPPLRLLRNLGLRLLNLLPPLKNF 378


>gnl|CDD|181023 PRK07538, PRK07538, hypothetical protein; Provisional.
          Length = 413

 Score = 94.6 bits (236), Expect = 4e-20
 Identities = 95/370 (25%), Positives = 153/370 (41%), Gaps = 71/370 (19%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDI 61
           I G GI GLTLA +L  RGI+  V E   +L   G GI + P+A R L  +G+LD L+ I
Sbjct: 5   IAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAI 64

Query: 62  WIEPEDFVF--RSGSTLKELSRFSCKNYS--RNNWGGIYGV----VKRHTLQKILLN--- 110
            I   +  +  R G  +          +S  R    G Y      + R  LQ +LL+   
Sbjct: 65  GIRTRELAYFNRHGQRI----------WSEPRGLAAG-YDWPQYSIHRGELQMLLLDAVR 113

Query: 111 ------HIQT-QPLARLHLSTHIT--HPDCTQISKINNQKPDLLVGADGLNSNIRH--YI 159
                  ++T   +        +T           + + + D+L+GADG++S +R   Y 
Sbjct: 114 ERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQLYP 173

Query: 160 DTQPITFSGDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTY----PLREDNTINMVF 215
           D  P  ++G ++ R +     AP F+  +S+ +    D  LV Y    P+  D    + +
Sbjct: 174 DEGPPRWNGVMMWRGVTE---APPFLTGRSMVMAGHLDGKLVVYPISEPVDADGRQLINW 230

Query: 216 VSSKHTLKDISFLKRS---EIHKEWFVKHLTNWHQEII---------QLILQINDTHLYP 263
           V+        +  +         E F+ H  +W  + +         + I +      YP
Sbjct: 231 VAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRAAEAIYE------YP 284

Query: 264 LFECEC-----KHW-HNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSY-LLGKKTIP 316
           +            W   +    L+GDAAH + P  + GA+ AI DA AL+  L       
Sbjct: 285 M----VDRDPLPRWTRGR--VTLLGDAAHPMYPVGSNGASQAILDARALADALAAHGDPE 338

Query: 317 AAISAYQKVR 326
           AA++AY+  R
Sbjct: 339 AALAAYEAER 348


>gnl|CDD|162640 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase.  This
           model represents the FAD-dependent monoxygenase
           responsible for the second hydroxylation step in the
           aerobic ubiquinone bioynthetic pathway. The scope of
           this model is limited to the proteobacteria. This family
           is closely related to the UbiF hydroxylase which
           catalyzes the final hydroxylation step. The enzyme has
           also been named VisB due to a mutant VISible light
           sensitive phenotype.
          Length = 382

 Score = 90.8 bits (226), Expect = 5e-19
 Identities = 90/378 (23%), Positives = 149/378 (39%), Gaps = 35/378 (9%)

Query: 2   IIGAGISGLTLAASLGHRG-IQSCVLEKKD----QLSDSGFGIQISPNASRILKRIGILD 56
           I+G G+ GL+LA +L   G I+  ++E       Q       + +S  + +IL+++G+  
Sbjct: 4   IVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWP 63

Query: 57  QLEDIWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQP 116
           +L      P   +  S       +      +     G  Y VV+   L + LL+ +    
Sbjct: 64  KLAPF-ATPILDIHVSDQGHFGATHLRASEFGLPALG--Y-VVELADLGQALLSRLALLT 119

Query: 117 LARLH----LSTHITHPDCTQISKINNQ--KPDLLVGADGLNSNIRH--YIDTQPITFSG 168
             +L+        I + D  +++  N Q  +  LL+ ADG NS +R    I T+   +  
Sbjct: 120 NIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANSKVRELLSIPTEEHDY-N 178

Query: 169 DVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFL 228
              L   I      +   F+     F P   L   PL+++   ++V+         I+ L
Sbjct: 179 QTALIANIRHEQPHQGCAFER----FTPHGPLALLPLKDNYRSSLVWCLPSKQADTIANL 234

Query: 229 KRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPL-FECECKHWHNKKNAVLIGDAAHT 287
             +E     F+  L       +  I Q+ +   YPL       H H +   VLIG+AA T
Sbjct: 235 PDAE-----FLAELQQAFGWRLGKITQVGERKTYPLKLRIAETHVHPR--VVLIGNAAQT 287

Query: 288 LLPFAAQGANMAIEDAYALSYLLGKKTIP----AAISAYQKVRAV-RVKRIRYRTKLNQL 342
           L P A QG N+ + D   L+ +L    I     A +  Y + R   +   I     LN+L
Sbjct: 288 LHPIAGQGFNLGLRDVETLAEVLIDARIDLGTYALLQEYLRRRQFDQFITIGLTDGLNRL 347

Query: 343 LFHMHRPASLFRNAGLRL 360
             +        RN GL  
Sbjct: 348 FSNHIPLLRALRNLGLLA 365


>gnl|CDD|136171 PRK07045, PRK07045, putative monooxygenase; Reviewed.
          Length = 388

 Score = 74.6 bits (183), Expect = 4e-14
 Identities = 85/386 (22%), Positives = 147/386 (38%), Gaps = 53/386 (13%)

Query: 1   MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60
           +I G+GI+G+ LA  LG RG    V+E+  +         + P+   +++ +G+LD    
Sbjct: 9   LINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDD--- 65

Query: 61  IWIEPEDFVFRSGSTLK-ELSRFSCK------NYSRNNWGGIYGVVKRHTLQKILLNHIQ 113
                   VF +G   +  +  +  K      +Y   +  G + ++    L+++LL  + 
Sbjct: 66  --------VFAAGGLRRDAMRLYHDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLD 117

Query: 114 TQPLARLHLSTHITH--------PDCTQISKINNQKPDLLVGADGLNSNIRHYI------ 159
             P  RL   T I               +S      P +LVGADG  S IR  +      
Sbjct: 118 GLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMIRDDVLRMPAE 177

Query: 160 ---DTQPITFSGDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFV 216
                 P+ F    +   +   N    ++D      +F        YP+ +  T  +V  
Sbjct: 178 RVPYATPMAFGTIALTDSVRECNRL--YVDSNQGLAYF--------YPIGDQAT-RLVVS 226

Query: 217 SSKHTLKDISFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKK 276
                ++                + + +   + +  I       L PL       +H K+
Sbjct: 227 FPADEMQGYLADTTRTKLLARLNEFVGDESADAMAAIGAGTAFPLIPLGRMNLDRYH-KR 285

Query: 277 NAVLIGDAAHTLLPFAAQGANMAIEDAYALS-----YLLGKKTIPAAISAYQKVR-AVRV 330
           N VL+GDAAH++ P   QG N+AIEDA  L      +L G+  +  A+  ++++R  V  
Sbjct: 286 NVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQIALADALERFERIRRPVNE 345

Query: 331 KRIRYRTKLNQLLFHMHRPASLFRNA 356
             I Y   L           + FR+ 
Sbjct: 346 AVISYGHALATTYHDRAALVANFRSQ 371


>gnl|CDD|168408 PRK06126, PRK06126, hypothetical protein; Provisional.
          Length = 545

 Score = 74.3 bits (183), Expect = 5e-14
 Identities = 79/370 (21%), Positives = 121/370 (32%), Gaps = 105/370 (28%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNAS----RI---LKRIGI 54
           I+G G  GL LA  LG RG+ S ++E+KD       G   +P A+    R     +R+GI
Sbjct: 12  IVGGGPVGLALALDLGRRGVDSILVERKD-------GTAFNPKANTTSARSMEHFRRLGI 64

Query: 55  LDQLEDIWIEPEDF----VFRSGSTLKELSRFSCKNYSR-------NNWGGIYGVVKRHT 103
            D++    + P D+     + +  T  EL+RF  +  S            G +   +   
Sbjct: 65  ADEVRSAGL-PVDYPTDIAYFTRLTGYELARF--RLPSAREAITPVGGPDGSWPSPELPH 121

Query: 104 ------LQKILLNHIQTQPLARLHL--------------STHITHPDCTQISKINNQKPD 143
                 L+ ILL H   QP   L                +  +   D  +   I   + D
Sbjct: 122 RIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTI---RAD 178

Query: 144 LLVGADGLNSNIRHYIDTQPITFSGDVVLRCLIPQN---NAPEF---IDFQSVN--IFFG 195
            LVG DG  S +R  +    I++ G   L+     +    AP     +          F 
Sbjct: 179 YLVGCDGARSAVRRSLG---ISYEGTSGLQR--DLSIYIRAPGLAALVGHDPAWMYWLFN 233

Query: 196 PDSHLVTYPLREDNTINMVFVSSKHTLKDI---SFLKRSEIHKEWFVKHLTNWHQEIIQL 252
           PD   V         I+          +D      L+  E            +      +
Sbjct: 234 PDRRGVLVA------ID---------GRDEWLFHQLRGGEDEFTIDDVDARAF------V 272

Query: 253 ILQINDTHLYPLFECE---CKHWH---------NKKNAVLIGDAAHTLLPFAAQGANMAI 300
              + +       + E      W           +    L GDAAH   P    G N  I
Sbjct: 273 RRGVGED-----IDYEVLSVVPWTGRRLVADSYRRGRVFLAGDAAHLFTPTGGYGMNTGI 327

Query: 301 EDAYALSYLL 310
            DA  L++ L
Sbjct: 328 GDAVNLAWKL 337


>gnl|CDD|168629 PRK06617, PRK06617, 2-octaprenyl-6-methoxyphenyl hydroxylase;
           Validated.
          Length = 374

 Score = 73.0 bits (179), Expect = 1e-13
 Identities = 91/341 (26%), Positives = 145/341 (42%), Gaps = 40/341 (11%)

Query: 1   MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFG----IQISPNASRILKRIGILD 56
           +I+G G+SG+  A S   +GI++ + E K   S   F       ++P++   L  I I +
Sbjct: 5   VILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWE 64

Query: 57  QLEDIWIEPEDF--VFRSGSTLKELSRFSCKNYSRNNWGGIYG-VVKRHTLQKILLNHIQ 113
           +LE    E +D   V    S + +L         RN+   + G VVK    +KILL+ I 
Sbjct: 65  ELEKFVAEMQDIYVVDNKASEILDL---------RNDADAVLGYVVKNSDFKKILLSKIT 115

Query: 114 TQPLARL----HLSTHITHPDCTQISKINNQ-KPDLLVGADGLNSNIRHYIDTQPITFSG 168
             PL  L         I+H D + I   + Q K +LL+  DG NS +R +     I    
Sbjct: 116 NNPLITLIDNNQYQEVISHNDYSIIKFDDKQIKCNLLIICDGANSKVRSHYFANEIEKPY 175

Query: 169 DVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFL 228
              L   I      E    +     F P       PL++    ++++ +S      I  L
Sbjct: 176 QTALTFNIKHEKPHENCAMEH----FLPLGPFALLPLKDQYASSVIWSTSSDQAALIVNL 231

Query: 229 KRSEIHKEWFVKHLT--NWHQEIIQLILQINDTHLYPL-FECECKHWHNKKNAVLIGDAA 285
              E      V+ LT  N    + ++ +  ++   +PL      +++HN+   VLI D A
Sbjct: 232 PVEE------VRFLTQRNAGNSLGKITID-SEISSFPLKARIANRYFHNR--IVLIADTA 282

Query: 286 HTLLPFAAQGANMAIEDAYALSYLLGKKTIPAAISAYQKVR 326
           HT+ P A QG N  I+D   LS ++        +  YQK+R
Sbjct: 283 HTVHPLAGQGLNQGIKDIEILSMIVSNN---GTLQEYQKLR 320


>gnl|CDD|169028 PRK07588, PRK07588, hypothetical protein; Provisional.
          Length = 391

 Score = 69.8 bits (171), Expect = 1e-12
 Identities = 69/318 (21%), Positives = 131/318 (41%), Gaps = 24/318 (7%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDI 61
           I GAGI+G TLA  L   G +  ++E+  +L   G+ +        + KR+GI DQL + 
Sbjct: 5   ISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREA 64

Query: 62  W--IEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLAR 119
              IE    V     T +  +  +  ++ R   G  +  + R  L   +   I  Q    
Sbjct: 65  GYQIEHVRSV---DPTGRRKADLNVDSFRRMV-GDDFTSLPRGDLAAAIYTAIDGQ--VE 118

Query: 120 LHLSTHIT----HPD--CTQISKINNQKPDLLVGADGLNSNIRHYI---DTQPITFSGDV 170
                 I     H D       +   +  DL++GADGL+S++R  +   +     + G  
Sbjct: 119 TIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSHVRRLVFGPERDFEHYLGCK 178

Query: 171 VLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKR 230
           V  C++     P   D ++  ++      +    LR D T+ +    ++H    ++  + 
Sbjct: 179 VAACVV-DGYRPR--DERTYVLYNEVGRQVARVALRGDRTLFLFIFRAEHDNPPLTPAEE 235

Query: 231 SEIHKEWFVKHLTNWH-QEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLL 289
            ++ ++ F      W   +I+  +  + D +   + +     W ++    L+GDAA    
Sbjct: 236 KQLLRDQFGD--VGWETPDILAALDDVEDLYFDVVSQIRMDRW-SRGRVALVGDAAACPS 292

Query: 290 PFAAQGANMAIEDAYALS 307
               +G+ +AI +AY L+
Sbjct: 293 LLGGEGSGLAITEAYVLA 310


>gnl|CDD|162643 TIGR01989, COQ6, Ubiquinone biosynthesis mono0xygenase COQ6.  This
           model represents the monooxygenase responsible for the
           4-hydroxylateion of the phenol ring in the aerobic
           biosynthesis of ubiquinone.
          Length = 437

 Score = 62.1 bits (151), Expect = 2e-10
 Identities = 81/383 (21%), Positives = 125/383 (32%), Gaps = 90/383 (23%)

Query: 2   IIGAGISGLTLAASLGH-----------------RGIQSCVLEKKDQLSDSGFGIQISPN 44
           I+G G  GL LAA+LG+                   ++S   EK D    +     I+P 
Sbjct: 5   IVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRV-SSITPA 63

Query: 45  ASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTL 104
           +    K+IG  D ++   I+P   +         L RF   N   +    +  +++   +
Sbjct: 64  SISFFKKIGAWDHIQSDRIQPFGRMQVWDGCSLALIRFDRDNGKED----MACIIENDNI 119

Query: 105 QKILLNHIQTQPLARLHLSTHITHPDCT---------------QISKINNQKPDLLVGAD 149
           Q  L N +Q      + +         T                +S        LL+GAD
Sbjct: 120 QNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGAD 179

Query: 150 GLNSNIRHYIDTQPITFSGD---VV--LRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYP 204
           G NSN+R   +     ++ +   VV  L+      N   +  F       GP + L   P
Sbjct: 180 GSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLPT----GPIALL---P 232

Query: 205 LREDNTINMVFVSSKHTLKDISFLKRSEIHKEWFVKHLTN-----WHQ---------EII 250
           L  DN   +V+ +S         L    +  E FV  L       +            + 
Sbjct: 233 L-PDNNSTLVWSTSPEEALR---LLS--LPPEDFVDALNAAFDLGYSDHPYSYLLDYAME 286

Query: 251 QLILQI-------NDTHLYP------------LFECECKHWHN--KKNAVLIGDAAHTLL 289
           +L   I             P             F     H      K   L+GDAAH + 
Sbjct: 287 KLNEDIGFRTEGSKSCFQVPPRVIGVVDKSRAAFPLGLGHADEYVTKRVALVGDAAHRVH 346

Query: 290 PFAAQGANMAIEDAYALSYLLGK 312
           P A QG N+   D  +L   L +
Sbjct: 347 PLAGQGVNLGFGDVASLVKALAE 369


>gnl|CDD|181326 PRK08255, PRK08255, salicylyl-CoA 5-hydroxylase; Reviewed.
          Length = 765

 Score = 61.9 bits (151), Expect = 2e-10
 Identities = 61/218 (27%), Positives = 95/218 (43%), Gaps = 47/218 (21%)

Query: 143 DLLVGADGLNSNIR-HYIDTQPITFSGDVVLRCLIPQNNAPEFI------DFQSVNIFFG 195
           DL++ +DGLNS IR  Y DT    F  D+  R    +     F+       F +    F 
Sbjct: 131 DLVIASDGLNSRIRTRYADT----FQPDIDTR----RCR---FVWLGTHKVFDAFTFAFE 179

Query: 196 PDSH----LVTYPLREDNTINMVFVSSKHTLKDISFLKRSEIH-----KEWFVKHLTNWH 246
              H       Y   +D+T   +  + +   +     + S+       ++ F  +L + H
Sbjct: 180 ETEHGWFQAHAYRF-DDDTSTFIVETPEEVWRAAGLDEMSQEESIAFCEKLFADYL-DGH 237

Query: 247 QEIIQLILQINDTHL-------YPLFECE-CKHWHNKKNAVLIGDAAHTLLPFA-AQGAN 297
                  L  N +HL       +P   CE   HW+ +   VL+GDAAHT   F+   G  
Sbjct: 238 P------LMSNASHLRGSAWINFPRVVCERWVHWNRRVPVVLMGDAAHT-AHFSIGSGTK 290

Query: 298 MAIEDAYALSYLLGK--KTIPAAISAYQKVRAVRVKRI 333
           +A+EDA  L+  L +    +PAA++AY++ R V V RI
Sbjct: 291 LALEDAIELARCLHEHPGDLPAALAAYEEERRVEVLRI 328


>gnl|CDD|181565 PRK08850, PRK08850, 2-octaprenyl-6-methoxyphenol hydroxylase;
           Validated.
          Length = 405

 Score = 59.8 bits (145), Expect = 1e-09
 Identities = 87/332 (26%), Positives = 142/332 (42%), Gaps = 53/332 (15%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGI-------QISPNASRILKRIGI 54
           IIG G+ GL LAA+L    ++  V+E   QL +             +S ++  IL+ +G 
Sbjct: 9   IIGGGMVGLALAAALKESDLRIAVIE--GQLPEEALNELPDVRVSALSRSSEHILRNLGA 66

Query: 55  LDQLEDIWIEPEDF--VFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHI 112
              +E     P     V+   S  +    F  ++ ++ + G I   V+   +Q  LL  +
Sbjct: 67  WQGIEARRAAPYIAMEVWEQDSFAR--IEFDAESMAQPDLGHI---VENRVIQLALLEQV 121

Query: 113 QTQPLARLHLSTHITHPDCTQIS--------KINNQK---PDLLVGADGLNSNIRHYIDT 161
           Q Q    L +        C  I+         ++N +     L+VGADG NS +R  +D 
Sbjct: 122 QKQDNVTLLMPAR-----CQSIAVGESEAWLTLDNGQALTAKLVVGADGANSWLRRQMDI 176

Query: 162 QPIT-----FSGDVV-LRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVF 215
            P+T      S  V  +R + P N+    I        F P   L   P+ E N  ++V+
Sbjct: 177 -PLTHWDYGHSALVANVRTVDPHNSVARQI--------FTPQGPLAFLPMSEPNMSSIVW 227

Query: 216 VSSKHTLKDISFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNK 275
             S   L+  + L  S+   E F K LT      + L   + +   +PL     + +  +
Sbjct: 228 --STEPLRAEALLAMSD---EQFNKALTAEFDNRLGLCEVVGERQAFPLKMRYARDF-VR 281

Query: 276 KNAVLIGDAAHTLLPFAAQGANMAIEDAYALS 307
           +   L+GDAAHT+ P A QG N+ + DA +L+
Sbjct: 282 ERVALVGDAAHTIHPLAGQGVNLGLLDAASLA 313


>gnl|CDD|180902 PRK07236, PRK07236, hypothetical protein; Provisional.
          Length = 386

 Score = 57.6 bits (140), Expect = 4e-09
 Identities = 52/224 (23%), Positives = 87/224 (38%), Gaps = 46/224 (20%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLEKK-DQLSDSGFGIQISPNASRILKRIGILDQLED 60
           +IG  + GL  A  L   G    V E+   +L   G GI + P   R L   G+     D
Sbjct: 11  VIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGV-ALPAD 69

Query: 61  IWIEPEDFVF--RSGSTLKELS---RFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQ 115
           I +   + ++  R G  ++        +       +W  +Y  ++               
Sbjct: 70  IGVPSRERIYLDRDGRVVQRRPMPQTQT-------SWNVLYRALRAAF------------ 110

Query: 116 PLARLHLSTHIT--HPDCTQIS-KINN---QKPDLLVGADGLNSNIRHYI--DTQPITFS 167
           P  R HL   +     D  +++ +  +   +  DLLVGADG  S +R  +  D +P T++
Sbjct: 111 PAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTVRAQLLPDVRP-TYA 169

Query: 168 GDVVLRCLIPQNNAPEFIDFQSVNIFF-------GPDSHLVTYP 204
           G V  R L+ +   P     ++            GP SH++ YP
Sbjct: 170 GYVAWRGLVDEAALPP----EARAALRDRFTFQLGPGSHILGYP 209



 Score = 38.0 bits (89), Expect = 0.004
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 278 AVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKKT--IPAAISAYQKVRAVRVKRI 333
             L+GDAA    P  A G   A  DA AL+  L      I AA++A++  R      I
Sbjct: 307 VALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAAGDIDAALAAWEAERLAVGAAI 364


>gnl|CDD|180451 PRK06185, PRK06185, hypothetical protein; Provisional.
          Length = 407

 Score = 54.1 bits (131), Expect = 6e-08
 Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 25/203 (12%)

Query: 143 DLLVGADGLNSNIRHY--IDTQPITFSGDVV-LRCLIPQNNAPEFIDFQSVNIFFGPDSH 199
           DL+VGADG +S +R    ++ +      DV+  R  +P+   P+  D +S+   FGP   
Sbjct: 159 DLVVGADGRHSRVRALAGLEVREFGAPMDVLWFR--LPR--EPD--DPESLMGRFGPGQG 212

Query: 200 LVTYPLREDNTINMVFVSSKHTLKDISFLKRSEIHKEWFVKHLTN---WHQEIIQLILQI 256
           L+    R D      +V  K        L+ + +  E F + +        + +  +   
Sbjct: 213 LIMID-RGD-YWQCGYVIPKGGYAA---LRAAGL--EAFRERVAELAPELADRVAELKSW 265

Query: 257 NDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKK--- 313
           +D  L  +     + WH +   + IGDAAH + P    G N+AI+DA A + +L +    
Sbjct: 266 DDVKLLDVRVDRLRRWH-RPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRR 324

Query: 314 --TIPAAISAYQKVRAVRVKRIR 334
                  ++A Q+ R    +  +
Sbjct: 325 GRVSDRDLAAVQRRREFPTRVTQ 347



 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEK-KDQLSDSGF-GIQISPNASRILKRIGILDQLE 59
          I+G G +G+ L   L   G+   VLEK  D L D  F G  + P+   ++  +G+L++  
Sbjct: 11 IVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRD--FRGDTVHPSTLELMDELGLLERFL 68

Query: 60 DI 61
          ++
Sbjct: 69 EL 70


>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family
           protein; Provisional.
          Length = 388

 Score = 54.2 bits (131), Expect = 6e-08
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 7/98 (7%)

Query: 280 LIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKKTIPAAI------SAYQKVRAVRVKRI 333
           L+GDAAH + P A QG N+ + D  AL+ +L  +     +        Y++ R   +  +
Sbjct: 284 LVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFRDLGDLRLLRRYERARREDILAL 343

Query: 334 RYRTKLNQLLFHMHRPASLF-RNAGLRLGIHKPLHKSL 370
           +  T   Q LF +  P + + RNAG+ L    PL K  
Sbjct: 344 QVATDGLQRLFALPGPLARWLRNAGMALVGALPLVKRW 381



 Score = 31.8 bits (73), Expect = 0.32
 Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 5/63 (7%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKKDQL--SDSGFGIQI---SPNASRILKRIGILD 56
          ++G G+ G +LA +L   G++  +L  +     +D  +  ++   SP++   L+R+G+  
Sbjct: 10 VVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQ 69

Query: 57 QLE 59
           L+
Sbjct: 70 ALD 72


>gnl|CDD|181564 PRK08849, PRK08849, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
           hydroxylase; Provisional.
          Length = 384

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 91/402 (22%), Positives = 152/402 (37%), Gaps = 80/402 (19%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLEKK-----DQLSDSGFGIQ-ISPNASRILKRIGIL 55
           ++G G+ G   A     +G    V+E       +        +  IS  +  +L+ +G  
Sbjct: 8   VVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAW 67

Query: 56  DQLEDIWIEPEDFVFRSGSTLKE---LSRFSCKNYSRNNWGGIYGVVKRHTLQKIL---- 108
             +  + + P    ++   T +     +RF     + +  G I   V+   +Q  L    
Sbjct: 68  SSIVAMRVCP----YKRLETWEHPECRTRFHSDELNLDQLGYI---VENRLIQLGLWQQF 120

Query: 109 -----LNHIQTQPLARLHLSTHITHPDCTQISKINNQKPDLLVGADGLNSNIRHYIDTQP 163
                L  +  + LA L  S      +   +      +   ++GADG NS +R       
Sbjct: 121 AQYPNLTLMCPEKLADLEFSAEG---NRVTLESGAEIEAKWVIGADGANSQVRQLAGIG- 176

Query: 164 ITFSGDVVLRCLI-------PQNNAPEFIDFQSVNIFF--GPDSHLVTYPLREDNTINMV 214
           IT + D    C++       PQ +    I +Q    F   GP S L   PL   N  ++V
Sbjct: 177 IT-AWDYRQHCMLINVETEQPQQD----ITWQQ---FTPSGPRSFL---PLC-GNQGSLV 224

Query: 215 FVSSKHTLKDISFLKRSEIHKE---WFVKHLTNWHQEIIQLILQINDTHLYPLFECECKH 271
           +  S   +K +S +   ++  E    F   L          +LQ      +PL     + 
Sbjct: 225 WYDSPKRIKQLSAMNPEQLRSEILRHFPAELGEIK------VLQHGS---FPLTRRHAQQ 275

Query: 272 WHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKKTI--PAAISAYQKVRAVR 329
           +  K N VL+GDAAHT+ P A QG N+  +D   L     K+ +   A+ + Y++ R  R
Sbjct: 276 YV-KNNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEKQGVLNDASFARYERRR--R 332

Query: 330 VKRIR--------YRTKLNQLLFHMHRPASLFRNAGLRLGIH 363
              +         Y+T  N L      P    RNA L+L  +
Sbjct: 333 PDNLLMQTGMDLFYKTFSNSLT-----PLKFVRNAALKLAEN 369


>gnl|CDD|168201 PRK05714, PRK05714, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
           hydroxylase; Provisional.
          Length = 405

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 104/419 (24%), Positives = 154/419 (36%), Gaps = 86/419 (20%)

Query: 1   MIIGAGISGLTLAASLGHRGIQSCV-----LEKKDQLSDSGFGIQISP--NAS-RILKRI 52
           +I+GAG+ G  LA +L   G++  +     L  K     + F  ++S    AS RIL+R+
Sbjct: 6   LIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERL 65

Query: 53  GILDQLEDIWIEP-EDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNH 111
           G  D +      P  +     GS   ++  FS  +      G I   V+   +Q  LL  
Sbjct: 66  GAWDGIAARRASPYSEMQVWDGSGTGQI-HFSAASVHAEVLGHI---VENRVVQDALLER 121

Query: 112 IQTQ-----PLARLHLSTH------ITHPDCTQISKINNQKPDLLVGADGLNSNIRHYID 160
           +          ARL           +T  D  Q+      +  L+V ADG NS +R    
Sbjct: 122 LHDSDIGLLANARLEQMRRSGDDWLLTLADGRQL------RAPLVVAADGANSAVRRLAG 175

Query: 161 TQPITFSGDVV-------LRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNT--- 210
               T   D +       +RC  P         +Q     F  D  L   PL  D     
Sbjct: 176 CA--TREWDYLHHAIVTSVRCSEPHRATA----WQR----FTDDGPLAFLPLERDGDEHW 225

Query: 211 INMVFVSSKH------TLKDISFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPL 264
            ++V+ ++         L D +F    E   E  +             +L  +     PL
Sbjct: 226 CSIVWSTTPEEAERLMALDDDAFCAALERAFEGRLGE-----------VLSADPRLCVPL 274

Query: 265 FECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKKTIPAAISAYQK 324
            +   K +     A LIGDAAHT+ P A QG N+   DA  L+ +L       A    ++
Sbjct: 275 RQRHAKRYVEPGLA-LIGDAAHTIHPLAGQGVNLGFLDAAVLAEVL-----LHAAERGER 328

Query: 325 VRAVRV--KRIRYRTKLN----------QLLFHMHR-PASLFRNAGLRLGIHKPLHKSL 370
           +  VRV  +  R R   N          + LF     P    RN GL+L    P  K+L
Sbjct: 329 LADVRVLSRFERRRMPHNLALMAAMEGFERLFQADPLPLRWLRNTGLKLVDQMPEAKAL 387


>gnl|CDD|180449 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase;
           Validated.
          Length = 538

 Score = 50.3 bits (121), Expect = 8e-07
 Identities = 47/181 (25%), Positives = 73/181 (40%), Gaps = 34/181 (18%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDI 61
           I+GAG  GLTLA  LG  G++  VLE+   L D    + I   A R+L+ IG+ D++   
Sbjct: 15  IVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPH 74

Query: 62  WIEPEDFVFRS--GSTLKELSRFSCKNYSRNNWGGIYGVVKR-----HTLQKILLNHIQT 114
                   F    G  L E++R S          G +G  +R       L+ +L   +  
Sbjct: 75  TTPNHGMRFLDAKGRCLAEIARPS---------TGEFGWPRRNAFHQPLLEAVLRAGLAR 125

Query: 115 QPLARL--------------HLSTHITHPDCTQISKINNQKPDLLVGADGLNSNIRHYID 160
            P  R+               ++  +T  D  Q   +   +   +VG DG NS +R  + 
Sbjct: 126 FPHVRVRFGHEVTALTQDDDGVTVTLTDAD-GQRETV---RARYVVGCDGANSFVRRTLG 181

Query: 161 T 161
            
Sbjct: 182 V 182



 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 17/31 (54%), Positives = 20/31 (64%)

Query: 280 LIGDAAHTLLPFAAQGANMAIEDAYALSYLL 310
           L GDAAH + PFA QG N  I DA  L++ L
Sbjct: 290 LAGDAAHLMPPFAGQGMNSGIRDAANLAWKL 320


>gnl|CDD|180297 PRK05868, PRK05868, hypothetical protein; Validated.
          Length = 372

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 70/325 (21%), Positives = 130/325 (40%), Gaps = 34/325 (10%)

Query: 1   MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60
           ++ GA ++G   A  LG  G    ++E+   L   G  I +   A  +L+R+G+L   ++
Sbjct: 5   VVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQE 64

Query: 61  --IWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGV---VKRHTLQKILLNHIQ-- 113
               I    FV R G+   EL R      S    G +      + R  L ++L    Q  
Sbjct: 65  HKTRIRGASFVDRDGN---ELFR---DTESTPTGGPVNSPDIELLRDDLVELLYGATQPS 118

Query: 114 TQPLARLHLSTHITHPDCTQIS--KINNQKPDLLVGADGLNSNIRHYIDTQPITFSGDVV 171
            + L    +ST     D  +++  +   ++ DL++GADGL+SN+R  +      F   + 
Sbjct: 119 VEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSNVRRLVFGPEEQFVKRLG 178

Query: 172 LRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNT---INMVFVSS------KHTL 222
               I     P F++      +   DS +       +NT     + F+ +      + T 
Sbjct: 179 THAAI--FTVPNFLELDYWQTWHYGDSTMAGVYSARNNTEARAALAFMDTELRIDYRDTE 236

Query: 223 KDISFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIG 282
              + L+R      W          +++  +    D +   + +     W ++    L+G
Sbjct: 237 AQFAELQRRMAEDGWV-------RAQLLHYMRSAPDFYFDEMSQILMDRW-SRGRVALVG 288

Query: 283 DAAHTLLPFAAQGANMAIEDAYALS 307
           DA +   P + QG ++A+  AY L+
Sbjct: 289 DAGYCCSPLSGQGTSVALLGAYILA 313


>gnl|CDD|181663 PRK09126, PRK09126, hypothetical protein; Provisional.
          Length = 392

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 16/167 (9%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLEKK--DQLSDSGFG---IQISPNASRILKRIGILD 56
           ++GAG +GL+ A SL   G++  ++E++    L+D  F    I ++  +  IL+R+G  D
Sbjct: 8   VVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWD 67

Query: 57  QLEDIWIEP-EDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQ 115
           ++ +  I P  D    +G +   L  F  +    +  G +   V  H +++     +  Q
Sbjct: 68  RIPEDEISPLRDAKVLNGRSPFAL-TFDARGRGADALGYL---VPNHLIRRAAYEAVSQQ 123

Query: 116 PLARLHLSTHITH----PDCTQISKINNQK--PDLLVGADGLNSNIR 156
               L   T +T      D  Q++  N ++    LLV AD   S  R
Sbjct: 124 DGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSATR 170



 Score = 34.1 bits (79), Expect = 0.065
 Identities = 35/120 (29%), Positives = 47/120 (39%), Gaps = 21/120 (17%)

Query: 260 HLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKKTIPAAI 319
           H YPL       +  K+ A LIGDAA  + P  A G N+ ++    L+     + I AA 
Sbjct: 265 HAYPLVAVYAHRFVAKRFA-LIGDAAVGMHPVTAHGFNLGLKGQDILA-----RLILAAA 318

Query: 320 SAYQKVRAVRVKRIRYRTK---LNQLLFHM-----------HRPASLFRNAGLRLGIHKP 365
              Q + A  +   RY  K     + L+H              PA L R A LR     P
Sbjct: 319 RRGQDIGAASLLE-RYERKHRLATRPLYHATNAIAALYTDDRPPARLLRRAVLRAANRFP 377


>gnl|CDD|178515 PLN02927, PLN02927, antheraxanthin epoxidase/zeaxanthin epoxidase.
          Length = 668

 Score = 48.6 bits (115), Expect = 3e-06
 Identities = 102/436 (23%), Positives = 161/436 (36%), Gaps = 92/436 (21%)

Query: 1   MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFG-----IQISPNASRILKRIGIL 55
           ++ G GI GL  A +   +G    V EK D  +  G G     IQI  NA         L
Sbjct: 85  LVAGGGIGGLVFALAAKKKGFDVLVFEK-DLSAIRGEGKYRGPIQIQSNA---------L 134

Query: 56  DQLEDIWIEPEDFVFRSGSTLKE-------------LSRFSCKNYSRNNWGGIYGVVKRH 102
             LE I I+  + V  +G    +               +F     + +    +  V+ R 
Sbjct: 135 AALEAIDIDVAEQVMEAGCITGDRINGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRM 194

Query: 103 TLQKILLNHIQTQPLA-RLHLSTHITHPDCTQISKINNQK--PDLLVGADGLNSNIRHYI 159
           TLQ+IL   +    +    ++       D   +   N Q+   DLLVGADG+ S +R+ +
Sbjct: 195 TLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWSKVRNNL 254

Query: 160 -DTQPITFSGDVVLRCLIPQNNAPEFI--DFQSVN--IFFGPDSHLVT----------YP 204
                 T+SG     C        +FI  D +SV   +F G   + V+          Y 
Sbjct: 255 FGRSEATYSG---YTCY---TGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYA 308

Query: 205 LREDNTINMVFVSSKHTLKDISFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPL 264
             E+         + + +K   F    EI   W    L   H      IL+ +     P 
Sbjct: 309 FHEEPAGG---ADAPNGMKKRLF----EIFDGWCDNVLDLLHATEEDAILRRDIYDRSPG 361

Query: 265 FECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLG-------KKTIP- 316
           F      W  K    L+GD+ H + P   QG  MAIED++ L+  L        +   P 
Sbjct: 362 FT-----W-GKGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPV 415

Query: 317 ---AAISAYQKVRAVRVKRIRYRTKLNQLLFHMHR--------PASL---FR-----NAG 357
              +++  Y++ R +RV  I    ++  ++   ++        P S    FR       G
Sbjct: 416 DVVSSLKRYEESRRLRVAIIHAMARMAAIMASTYKAYLGVGLGPLSFLTKFRVPHPGRVG 475

Query: 358 LRLGIHKPLHKSLDWI 373
            R  +   +   LDW+
Sbjct: 476 GRFFVDIAMPLMLDWV 491


>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase;
           Provisional.
          Length = 388

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 13/95 (13%)

Query: 275 KKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKKTI----PAAISAYQKVRAVRV 330
                L+G+AAH   P  AQG N+ + D   L  ++  +       A ++AY + R   +
Sbjct: 279 AGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRPEDPGSAAVLAAYDRARRPDI 338

Query: 331 KRIRYRTK----LNQ-LLFHMHRPASLFRNAGLRL 360
                RT     LN+ LL     P    R AGL L
Sbjct: 339 LS---RTASVDLLNRSLLSDF-LPVQDLRAAGLHL 369



 Score = 30.6 bits (70), Expect = 0.62
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 2  IIGAGISGLTLAASLGHRG 20
          +IG G +GL  A +L   G
Sbjct: 12 VIGGGPAGLAAAIALARAG 30


>gnl|CDD|180946 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase;
           Validated.
          Length = 415

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 21/169 (12%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLEKK--DQLSDSGFGIQISPNASRILKRIGILDQLE 59
           I+G GI GLTLAA+L   G++  ++E +  +  +  G    +S  ++RI + IG+ +++ 
Sbjct: 23  IVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKIL 82

Query: 60  DIWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIY-GVVKRH-TLQKILLNHIQTQPL 117
              I     +  S +    + +F        + G    G V  H  L + L   +Q+ P 
Sbjct: 83  P-QIGKFRQIRLSDADYPGVVKF-----QPTDLGTEALGYVGEHQVLLEALQEFLQSCPN 136

Query: 118 ARLH-----LSTHITHPDCTQISKINNQKP-----DLLVGADGLNSNIR 156
                    +S      D   ++     K       L+V ADG  S IR
Sbjct: 137 ITWLCPAEVVSVE-YQQDAATVTLEIEGKQQTLQSKLVVAADGARSPIR 184



 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 18/105 (17%)

Query: 279 VLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKKTIPAAISAYQKVRAVRV-KRI-RYR 336
            L+GDAAH   P   QG N+ I DA AL+     + +  A    + + ++ V KR  R+R
Sbjct: 297 ALVGDAAHCCHPVGGQGLNLGIRDAAALA-----QVLQTAHQRGEDIGSLAVLKRYERWR 351

Query: 337 TKLNQL----------LFHMHR-PASLFRNAGLRLGIHKPLHKSL 370
            + N L          LF     P  + R  GL L  H P  K L
Sbjct: 352 KRENWLILGFTDLLDRLFSNQWWPLVVVRRLGLWLLRHVPPLKRL 396


>gnl|CDD|183139 PRK11445, PRK11445, putative oxidoreductase; Provisional.
          Length = 351

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 26/171 (15%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGF----GIQISPNASRILKRIGILDQ 57
           IIG G +G  LA  L  + ++   ++KK Q    GF    G  ++P+A +   + G L  
Sbjct: 6   IIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDG-LTL 63

Query: 58  LEDIWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHT----LQKILLNHIQ 113
            +D+   P+ F  ++      L+R    NY R+        + RH     L+ ++   ++
Sbjct: 64  PKDVIANPQIFAVKTIDLANSLTR----NYQRSYIN-----IDRHKFDLWLKSLIPASVE 114

Query: 114 TQPLARLHLSTHITHPDCTQISKINNQ-----KPDLLVGADGLNSNIRHYI 159
               +           D   +    +          LVGADG NS +R ++
Sbjct: 115 VYHNS--LCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSMVRRHL 163


>gnl|CDD|181243 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional.
          Length = 547

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 18/59 (30%), Positives = 30/59 (50%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60
          ++GAG  GL LA  L  +G+   +L+  D LS     I  +  +  I  R+G  +++ D
Sbjct: 28 VVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVD 86



 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 13/98 (13%)

Query: 282 GDAAHTLLPFAAQGANMAIEDA----YALSYLLGKKTIPAAISAY--QKVRAVRVKRIRY 335
           GDAAH + PF A+GAN  I+DA    + L+ +L  +   + + +Y  ++  A   + IR 
Sbjct: 305 GDAAHQVSPFGARGANSGIQDADNLAWKLALVLRGRAPDSLLDSYASEREFAAD-ENIRN 363

Query: 336 RTKLNQLLFHM--HRPAS-LFRNAGLRLGIHKPLHKSL 370
            T+     F +    P S LFR+A LRL    P  + L
Sbjct: 364 STRSTD--F-ITPKSPVSRLFRDAVLRLARDHPFARRL 398


>gnl|CDD|162668 TIGR02032, GG-red-SF, geranylgeranyl reductase family.  This model
           represents a subfamily which includes geranylgeranyl
           reductases involved in chlorophyll and
           bacteriochlorophyll biosynthesis as well as other
           related enzymes which may also act on geranylgeranyl
           groups or related substrates.
          Length = 295

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 60/313 (19%), Positives = 112/313 (35%), Gaps = 44/313 (14%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDI 61
           ++GAG +G + A  L  +G++  +LEKK        G  +SP   R+L+ + +  +L   
Sbjct: 5   VVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSP---RVLEELDLPLELIVN 61

Query: 62  WIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLH 121
            +    F   +G +++                 +  V+ R    + L    Q    A L 
Sbjct: 62  LVRGARFFSPNGDSVEIPIE-----------TELAYVIDRDAFDEQLAERAQEAG-AELR 109

Query: 122 LSTHITHPDCTQ---------ISKINNQKPDLLVGADGLNSNIRHYIDTQPITFSGDVVL 172
           L T +   D                      +++GADG  S +   +  +       V  
Sbjct: 110 LGTTVL--DVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSIVAKKLGLRKEPRELGVAA 167

Query: 173 RCLIPQNNAPEFIDFQSVNIFFG----PDSHLVTYPLREDNTINMVFVSSKHTLKDISFL 228
           R  +   +     DF  V ++      P  +   +P + D T N V V S+   +     
Sbjct: 168 RAEVEMPDEEVDEDF--VEVYIDRGISPGGYGWVFP-KGDGTAN-VGVGSRSAEEGEDLK 223

Query: 229 KRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTL 288
           K     K++  +       E +++I         P+   +      + N +L+GDAA  +
Sbjct: 224 K---YLKDFLARRPELKDAETVEVI-----GAPIPIGRPDD--KTVRGNVLLVGDAAGHV 273

Query: 289 LPFAAQGANMAIE 301
            P   +G   A+ 
Sbjct: 274 KPLTGEGIYYAMR 286


>gnl|CDD|180227 PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase;
           Validated.
          Length = 395

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 9/114 (7%)

Query: 253 ILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGK 312
           I        YPL               L+G+AA TL P A QG N+ + D  +L+  L +
Sbjct: 260 ITHAGKRSAYPLALVTAAQ-QISHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQ 318

Query: 313 KTI-------PAAISAYQKVRAV-RVKRIRYRTKLNQLLFHMHRPASLFRNAGL 358
                      A +  YQ+ R   R   I +   L +L  +   P  + RN GL
Sbjct: 319 ALARGEDIGDYAVLQRYQQRRQQDREATIGFTDGLVRLFANRWAPLVVGRNLGL 372



 Score = 31.7 bits (73), Expect = 0.29
 Identities = 48/189 (25%), Positives = 75/189 (39%), Gaps = 42/189 (22%)

Query: 1   MIIGAGISGLTLA---ASLGHRGIQSCVLEKKDQLSDS--GF---GIQISPNASRILKRI 52
           +I+G G++G TLA   + L H G+   ++E     SD+  GF    I ++    + L R+
Sbjct: 7   IIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARL 66

Query: 53  GILDQLEDIWIEPEDFVF-----RSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKI 107
           G+   L D    P   +       +G       R   ++Y     G  Y VV+ H + + 
Sbjct: 67  GVWQALADC-ATPITHIHVSDRGHAGFV-----RLDAEDYGVPALG--Y-VVELHDVGQR 117

Query: 108 LLNHIQTQPLARLHL------------STHITHPDCTQISKINNQKPDLLVGADGLNSNI 155
           L   +   P   LH             S  +T  D   ++        LLV ADG +S +
Sbjct: 118 LFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTG------RLLVAADGSHSAL 171

Query: 156 RHY--IDTQ 162
           R    ID Q
Sbjct: 172 REALGIDWQ 180


>gnl|CDD|180450 PRK06184, PRK06184, hypothetical protein; Provisional.
          Length = 502

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 1  MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDS--GFGIQISPNASRILKRIGILDQL 58
          +I+GAG +GLTLA  L  RG+   ++EK  +      G GIQ  P    +   +G+LD++
Sbjct: 7  LIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQ--PRTQEVFDDLGVLDRV 64



 Score = 39.6 bits (93), Expect = 0.001
 Identities = 15/32 (46%), Positives = 19/32 (59%)

Query: 280 LIGDAAHTLLPFAAQGANMAIEDAYALSYLLG 311
           L GDAAH   P   QG N +++DAY L + L 
Sbjct: 285 LAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLA 316


>gnl|CDD|180935 PRK07333, PRK07333, 2-octaprenyl-6-methoxyphenyl hydroxylase;
           Provisional.
          Length = 403

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 14/27 (51%), Positives = 19/27 (70%)

Query: 280 LIGDAAHTLLPFAAQGANMAIEDAYAL 306
           L+GDAAH + P A QG N+ ++D  AL
Sbjct: 284 LVGDAAHGIHPIAGQGLNLGLKDVAAL 310


>gnl|CDD|181199 PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
           hydroxylase; Reviewed.
          Length = 391

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 279 VLIGDAAHTLLPFAAQGANMAIEDAYAL 306
            L+GDAAHT+ P A QG N+   D  AL
Sbjct: 284 ALVGDAAHTINPLAGQGVNLGYRDVDAL 311



 Score = 28.8 bits (65), Expect = 2.5
 Identities = 43/170 (25%), Positives = 66/170 (38%), Gaps = 22/170 (12%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLEKK-----DQLSDSGFGIQ-ISPNASRILKRIGIL 55
           I+G G+ G  LA  L   G    VLE       D  S     I  IS  +  +LK +G+ 
Sbjct: 10  IVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVW 69

Query: 56  DQLEDIWIEPEDFVFRSGSTLKELS---RFSCKNYSRNNWGGIYGVVKRHTLQKILLNHI 112
           D ++ +   P    +R   T +  +    F          G  Y V  R  LQ  L   +
Sbjct: 70  DAVQAMRSHP----YRRLETWEWETAHVVFDAAELKLPELG--YMVENR-VLQLALWQAL 122

Query: 113 QTQPLARL----HLSTHITHPDCTQISKINNQK--PDLLVGADGLNSNIR 156
           +  P   L     L       D  +++  + ++    L++GADG NS +R
Sbjct: 123 EAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQVR 172


>gnl|CDD|180788 PRK06996, PRK06996, hypothetical protein; Provisional.
          Length = 398

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 279 VLIGDAAHTLLPFAAQGANMAIEDAYALSYLL-GKKTIPAAISAYQKVRAV 328
             +G+AA TL P A QG N+ + DA+ L+  L      P A++ +   RA+
Sbjct: 294 AAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSDHGATPLALATFAARRAL 344


>gnl|CDD|179330 PRK01747, mnmC, bifunctional tRNA
           (mnm(5)s(2)U34)-methyltransferase/FAD-dependent
           cmnm(5)s(2)U34 oxidoreductase; Reviewed.
          Length = 662

 Score = 39.8 bits (94), Expect = 0.001
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32
           IIG GI+G  LA +L  RG Q  + E  +  
Sbjct: 265 IIGGGIAGAALALALARRGWQVTLYEADEAP 295


>gnl|CDD|162991 TIGR02734, crtI_fam, phytoene desaturase.  Phytoene is converted
          to lycopene by desaturation at four (two symmetrical
          pairs of) sites. This is achieved by two enzymes (crtP
          and crtQ) in cyanobacteria (Gloeobacter being an
          exception) and plants, but by a single enzyme in most
          other bacteria and in fungi. This single enzyme is
          called the bacterial-type phytoene desaturase, or CrtI.
          Most members of this family, part of the larger Pfam
          family pfam01593, which also contains amino oxidases,
          are CrtI itself; it is likely that all members act on
          either phytoene or on related compounds such as
          dehydrosqualene, for carotenoid biosynthesis.
          Length = 502

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 7/43 (16%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKKDQ-------LSDSGF 37
          +IGAG  GL LA  L   GI   V+E++D+       L D GF
Sbjct: 3  VIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGF 45


>gnl|CDD|181197 PRK08013, PRK08013, oxidoreductase; Provisional.
          Length = 400

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 279 VLIGDAAHTLLPFAAQGANMAIEDAYAL 306
            L+GDAAHT+ P A QG N+   DA  L
Sbjct: 285 ALVGDAAHTIHPLAGQGVNLGFMDAAEL 312



 Score = 29.2 bits (66), Expect = 1.9
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)

Query: 144 LLVGADGLNSNIRHYIDTQPITF 166
           L+VGADG NS +R+  D  P+TF
Sbjct: 159 LVVGADGANSWLRNKADI-PLTF 180



 Score = 28.5 bits (64), Expect = 2.8
 Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 6/63 (9%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKK---DQLSDSGFGIQISP-NAS--RILKRIGIL 55
          I G G+ GL +A  L   G++  VLE++      +D+   +++S  NA+  ++L R+G+ 
Sbjct: 8  IAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVW 67

Query: 56 DQL 58
            +
Sbjct: 68 QDI 70


>gnl|CDD|162990 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD.  Members of this
          family are slr1293, a carotenoid biosynthesis protein
          which was shown to be the C-3',4' desaturase (CrtD) of
          myxoxanthophyll biosynthesis in Synechocystis sp.
          strain PCC 6803, and close homologs (presumed to be
          functionally equivalent) from other cyanobacteria,
          where myxoxanthophyll biosynthesis is either known or
          expected. This enzyme can act on neurosporene and so
          presumably catalyzes the first step that is committed
          to myxoxanthophyll.
          Length = 492

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32
          +IGAGI+GLT AA L  RG +  +LE+  Q 
Sbjct: 6  VIGAGIAGLTAAALLAKRGYRVTLLEQHAQP 36


>gnl|CDD|181316 PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygenase; Validated.
          Length = 392

 Score = 38.6 bits (91), Expect = 0.003
 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 16/58 (27%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNA--SRILKRIGILDQ 57
          IIGAG +GL L   L   GI S VLE++            S      RI  R G+L+Q
Sbjct: 7  IIGAGPAGLLLGQLLHLAGIDSVVLERR------------SREYVEGRI--RAGVLEQ 50



 Score = 35.9 bits (84), Expect = 0.016
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 280 LIGDAAHTLLPFAAQGANMAIEDAYALS 307
           L GDAAH + P  A+G N+A  D   L+
Sbjct: 283 LAGDAAHIVPPTGAKGLNLAASDVRYLA 310


>gnl|CDD|179767 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase;
          Provisional.
          Length = 257

 Score = 38.3 bits (90), Expect = 0.003
 Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 17/65 (26%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFG------------IQISPNASRIL 49
          I+GAG SGLT A  L   G++  V E+K  LS   FG            I +   A  IL
Sbjct: 30 IVGAGPSGLTAAYYLAKAGLKVAVFERK--LS---FGGGMWGGGMLFNKIVVQEEADEIL 84

Query: 50 KRIGI 54
             GI
Sbjct: 85 DEFGI 89


>gnl|CDD|180899 PRK07233, PRK07233, hypothetical protein; Provisional.
          Length = 434

 Score = 38.3 bits (90), Expect = 0.004
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32
          I+G GI+GL  A  L  RG +  V E  DQL
Sbjct: 4  IVGGGIAGLAAAYRLAKRGHEVTVFEADDQL 34


>gnl|CDD|178222 PLN02612, PLN02612, phytoene desaturase.
          Length = 567

 Score = 36.7 bits (85), Expect = 0.009
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 19/116 (16%)

Query: 1   MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL--------SDSG----FGIQI----SPN 44
           +I GAG++GL+ A  L   G +  +LE +D L         + G     G+ I     PN
Sbjct: 97  VIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPN 156

Query: 45  ASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVK 100
              +   +GI D+L+  W E    +F   +   E SRF           GI+ +++
Sbjct: 157 VQNLFGELGINDRLQ--WKE-HSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILR 209


>gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase.
          Length = 435

 Score = 36.6 bits (85), Expect = 0.012
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 1  MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL-----SDSGFGIQISPNAS 46
          ++IG GI+G+  A +L     +  +LE +D++     +D  FG  +   AS
Sbjct: 4  IVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMGAS 54


>gnl|CDD|181140 PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrogenase;
          Reviewed.
          Length = 557

 Score = 36.6 bits (85), Expect = 0.012
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 6/63 (9%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKKDQL----SDSGFGIQISPNASRILKRIGILDQ 57
          ++G+G +G+  A +  HRG+ + V+EK        + SG G+ I PN   +LKR G+ D 
Sbjct: 12 VVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTARSGGGVWI-PNNE-VLKRAGVPDT 69

Query: 58 LED 60
           E 
Sbjct: 70 PEA 72


>gnl|CDD|161797 TIGR00275, TIGR00275, flavoprotein, HI0933 family.  The model
          when searched with a partial length search brings in
          proteins with a dinucleotide-binding motif (Rossman
          fold) over the initial 40 residues of the model,
          including oxidoreductases and dehydrogenases. Partially
          characterized members include an FAD-binding protein
          from Bacillus cereus and flavoprotein HI0933 from
          Haemophilus influenzae.
          Length = 400

 Score = 36.4 bits (85), Expect = 0.014
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32
          IIG G +GL  A +    G+   +LEK  ++
Sbjct: 2  IIGGGAAGLMAAITAAREGLSVLLLEKNKKI 32


>gnl|CDD|181552 PRK08773, PRK08773, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
           hydroxylase; Validated.
          Length = 392

 Score = 35.6 bits (82), Expect = 0.019
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 281 IGDAAHTLLPFAAQGANMAIEDAYALSYLL 310
           +GDAAH + P A QG N+ + D  AL  L+
Sbjct: 287 LGDAAHVVHPLAGQGVNLGLRDVAALQQLV 316


>gnl|CDD|181317 PRK08244, PRK08244, hypothetical protein; Provisional.
          Length = 493

 Score = 35.1 bits (81), Expect = 0.027
 Identities = 18/58 (31%), Positives = 31/58 (53%)

Query: 1  MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQL 58
          +IIG G  GL LA+ L   G+++CV+E+  +       + + P    IL   G+L++ 
Sbjct: 6  IIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERF 63



 Score = 34.3 bits (79), Expect = 0.053
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 4/80 (5%)

Query: 280 LIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKKTIPAA----ISAYQKVRAVRVKRIRY 335
           L GDAAH   P   QG N+ ++DA  L + L       A    + +Y   R      +  
Sbjct: 276 LAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKGWAPDWLLDSYHAERHPVGTALLR 335

Query: 336 RTKLNQLLFHMHRPASLFRN 355
            T++   LF   RP    R+
Sbjct: 336 NTEVQTKLFDFTRPGLALRS 355


>gnl|CDD|131413 TIGR02360, pbenz_hydroxyl, 4-hydroxybenzoate 3-monooxygenase.
           Members of this family are the enzyme 4-hydroxybenzoate
           3-monooxygenase, also called p-hydroxybenzoate
           hydroxylase. It converts 4-hydroxybenzoate + NADPH +
           molecular oxygen to protocatechuate + NADPH + water. It
           contains monooxygenase (pfam01360) and FAD binding
           (pfam01494) domains. Pathways that contain this enzyme
           include the protocatechuate 4,5-degradation pathway.
          Length = 390

 Score = 34.7 bits (80), Expect = 0.037
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 280 LIGDAAHTLLPFAAQGANMAIEDAYALSYLL 310
           L GDAAH + P  A+G N+A  D + L   L
Sbjct: 283 LAGDAAHIVPPTGAKGLNLAASDVHYLYEAL 313



 Score = 31.7 bits (72), Expect = 0.33
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 16/58 (27%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPN--ASRILKRIGILDQ 57
          IIGAG SGL L   L   GI + +LE++            S +    RI  R G+L+Q
Sbjct: 7  IIGAGPSGLLLGQLLHKAGIDNVILERQ------------SRDYVLGRI--RAGVLEQ 50


>gnl|CDD|183783 PRK12835, PRK12835, 3-ketosteroid-delta-1-dehydrogenase;
          Reviewed.
          Length = 584

 Score = 34.8 bits (80), Expect = 0.042
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 6/65 (9%)

Query: 1  MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSD----SGFGIQISPNASRILKRIGILD 56
          +++G+G  G+T A +   RG+ + V+EK          SG GI + P A    +R G + 
Sbjct: 15 LVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGSTALSGGGIWV-PGAP-AQRREGYVP 72

Query: 57 QLEDI 61
            ED+
Sbjct: 73 DPEDV 77


>gnl|CDD|185578 PTZ00367, PTZ00367, squalene epoxidase; Provisional.
          Length = 567

 Score = 34.4 bits (79), Expect = 0.048
 Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 27/164 (16%)

Query: 191 NIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKRSEIHKEWFVKHL-TNWHQEI 249
            +F G    +++Y L +DN + ++   +K TL  +   ++SE   E    HL  N  +  
Sbjct: 255 TVFLGKTGPILSYRL-DDNELRVLVDYNKPTLPSLE--EQSEWLIEDVAPHLPENMRESF 311

Query: 250 I------QLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDA 303
           I      + I  + +    P F          K  V IGD A+   P    G      D 
Sbjct: 312 IRASKDTKRIRSMPNARYPPAFPS-------IKGYVGIGDHANQRHPLTGGGMTCCFSDC 364

Query: 304 YALSYLLGKKTIPAAISAYQ--------KVRAVRVKRIRYRTKL 339
             L+  L    I +  S  Q         ++A  +   R R   
Sbjct: 365 IRLAKSL--TGIKSLRSIDQNEMAEIEDAIQAAILSYARNRKTH 406



 Score = 29.0 bits (65), Expect = 2.1
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 1  MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS--DSGFGIQISPNASRILKRIGILDQL 58
          +I+G  I+G  LA +L  +G +  +LE +D  S  D   G  + P     LK +G+ +  
Sbjct: 37 IIVGGSIAGPVLAKALSKQGRKVLMLE-RDLFSKPDRIVGELLQPGGVNALKELGMEECA 95

Query: 59 EDI 61
          E I
Sbjct: 96 EGI 98


>gnl|CDD|183787 PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrogenase;
          Reviewed.
          Length = 557

 Score = 34.3 bits (79), Expect = 0.058
 Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 6/64 (9%)

Query: 1  MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSD----SGFGIQISPNASRILKRIGILD 56
          +++G+G  G+  A +    G++  ++EK+D++      SG  + + PN + ++K  G+ D
Sbjct: 10 VVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTAMSGGVLWL-PN-NPLMKAAGVPD 67

Query: 57 QLED 60
            ED
Sbjct: 68 SHED 71


>gnl|CDD|178566 PLN02985, PLN02985, squalene monooxygenase.
          Length = 514

 Score = 34.1 bits (78), Expect = 0.069
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 1   MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60
           +I+GAG+ G  LA +L   G +  V+E+  +  +   G  + P    +L ++G+ D LE 
Sbjct: 47  IIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEG 106

Query: 61  I 61
           I
Sbjct: 107 I 107


>gnl|CDD|183358 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed.
          Length = 451

 Score = 34.1 bits (79), Expect = 0.070
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 17/74 (22%)

Query: 2  IIGAGISGLTLAASLGHRG--IQSCVLEKKDQL-------SDSGFGIQISPNA------- 45
          IIG GI+GL+ A  L  +G      +LE  D+L          GF I++ P +       
Sbjct: 5  IIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPS 64

Query: 46 -SRILKRIGILDQL 58
             ++K +G+ D+L
Sbjct: 65 APALVKELGLEDEL 78


>gnl|CDD|183509 PRK12409, PRK12409, D-amino acid dehydrogenase small subunit;
          Provisional.
          Length = 410

 Score = 33.8 bits (78), Expect = 0.071
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEK 28
          +IGAGI+G+T A +L  RG Q  V ++
Sbjct: 6  VIGAGITGVTTAYALAQRGYQVTVFDR 32


>gnl|CDD|180718 PRK06834, PRK06834, hypothetical protein; Provisional.
          Length = 488

 Score = 33.5 bits (77), Expect = 0.096
 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 7/60 (11%)

Query: 280 LIGDAAHTLLPFAAQGANMAIEDAYALSYLLG---KKTIPAA-ISAYQKVR---AVRVKR 332
           L GDAAH   P   QG N  ++DA  L + L    K T P + +  Y   R   A RV R
Sbjct: 269 LAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKGTSPESLLDTYHAERHPVAARVLR 328


>gnl|CDD|161807 TIGR00292, TIGR00292, thiazole biosynthesis enzyme.  This enzyme
          is involved in the biosynthesis of the thiamine
          precursor thiazole, and is repressed by thiamine.This
          family includes c-thi1, a Citrus gene induced during
          natural and ethylene induced fruit maturation and is
          highly homologous to plant and yeast thi genes involved
          in thiamine biosynthesis.
          Length = 254

 Score = 33.3 bits (76), Expect = 0.099
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 1  MIIGAGISGLTLAASLGHRGIQSCVLEKK 29
          +I+GAG SGLT A  L   G++ CVLE+ 
Sbjct: 25 IIVGAGPSGLTAAYYLAKNGLKVCVLERS 53


>gnl|CDD|131778 TIGR02731, phytoene_desat, phytoene desaturase.  Plants and
          cyanobacteria (and, supposedly, Chlorobium tepidum)
          have a conserved pathway from two molecules
          geranylgeranyl-PP to one of all-trans-lycopene. Members
          of this family are the enzyme pytoene desaturase (also
          called phytoene dehydrogenase). This model does not
          include the region of the chloroplast transit peptide
          in plants. A closely related family, excluded by this
          model, is zeta-carotene desaturase, another enzyme in
          the same pathway.
          Length = 453

 Score = 33.3 bits (76), Expect = 0.12
 Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 19/97 (19%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKKDQL---------SDSGF---GIQI----SPNA 45
          I GAG++GL+ A  L   G    VLE +D L          D  +   G+ I     PN 
Sbjct: 4  IAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNM 63

Query: 46 SRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELSRF 82
           ++LK + I D+L+  W      +F         SRF
Sbjct: 64 LQLLKELNIEDRLQ--WKS-HSMIFNQPDKPGTFSRF 97


>gnl|CDD|162664 TIGR02023, BchP-ChlP, geranylgeranyl reductase.  This model
           represents a group of geranylgeranyl reductases specific
           for the biosyntheses of bacteriochlorophyll and
           chlorophyll. It is unclear whether the processes of
           isoprenoid ligation to the chlorin ring and reduction of
           the geranylgeranyl chain to a phytyl chain are
           necessarily ordered the same way in all species (see
           introduction to ).
          Length = 388

 Score = 32.8 bits (75), Expect = 0.14
 Identities = 64/332 (19%), Positives = 102/332 (30%), Gaps = 72/332 (21%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDI 61
           +IG G SG T A +L   GI++ +LE+            I P    I   +     +E+ 
Sbjct: 5   VIGGGPSGATAAETLARAGIETILLERALS--------NIKPCGGAIPPCL-----IEEF 51

Query: 62  WIEPEDFVFRSGSTLKELSRFSCKNYSRN----NWGGIYGVVKRHTLQKILLNHIQTQ-- 115
            I P+  + R    + ++   S           +  G  G+V+R      L    Q    
Sbjct: 52  DI-PDSLIDRR---VTQMRMISPSRVPIKVTIPSEDGYVGMVRREVFDSYLRERAQKAGA 107

Query: 116 -----PLARLHLSTHITHPDCTQISKINN-QKP----DLLVGADGLNSNIRHYIDTQPIT 165
                   +L               K    +K     D+++GADG NS +   +      
Sbjct: 108 ELIHGLFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKELGLPK-- 165

Query: 166 FSGDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLRED---------NTINMVFV 216
                         N P  I +Q       PD  +  Y    D         +    VF 
Sbjct: 166 --------------NLPRVIAYQE--RIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFP 209

Query: 217 SSKHTLKDISFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKK 276
              H    I+    +  H     +   N  +       Q       P+       W   +
Sbjct: 210 KGDH----IAVGTGTGTHGFDAKQLQANLRRRAGLDGGQTIRREAAPIPMKPRPRWDFGR 265

Query: 277 NAVLIGDAAHTLLP-------FAAQGANMAIE 301
            A+L+GDAA  + P       FA +   MA +
Sbjct: 266 -AMLVGDAAGLVTPASGEGIYFAMKSGQMAAQ 296


>gnl|CDD|180885 PRK07208, PRK07208, hypothetical protein; Provisional.
          Length = 479

 Score = 32.2 bits (74), Expect = 0.25
 Identities = 15/30 (50%), Positives = 16/30 (53%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31
          IIGAG +GLT A  L  RG    VLE    
Sbjct: 9  IIGAGPAGLTAAYELLKRGYPVTVLEADPV 38


>gnl|CDD|181360 PRK08294, PRK08294, phenol 2-monooxygenase; Provisional.
          Length = 634

 Score = 31.9 bits (73), Expect = 0.29
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 279 VLI-GDAAHTLLPFAAQGANMAIEDAYALSYLLG 311
           V I GDA HT    A QG N++++D + L + L 
Sbjct: 342 VFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLA 375



 Score = 29.2 bits (66), Expect = 2.0
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 1  MIIGAGISGLTLAASLGH-RGIQSCVLEKKD 30
          +I+G G +GLTLAA L     I + ++E+K 
Sbjct: 36 LIVGCGPAGLTLAAQLSAFPDITTRIVERKP 66


>gnl|CDD|161930 TIGR00562, proto_IX_ox, protoporphyrinogen oxidase.  This protein
          is a flavoprotein and has a beta-alpha-beta
          dinucleotide binding motif near the amino end.
          Length = 462

 Score = 31.3 bits (71), Expect = 0.38
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 12/75 (16%)

Query: 2  IIGAGISGLTLAASLG----HRGIQSCVLEKKDQL-------SDSGFGIQISPNASRILK 50
          IIG GISGL  A  L        ++  ++E  D++        + G+ I+  P++    K
Sbjct: 7  IIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERK 66

Query: 51 RIGILDQLEDIWIEP 65
          +    D ++D+ +E 
Sbjct: 67 K-SAPDLVKDLGLEH 80


>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional.
          Length = 393

 Score = 30.9 bits (71), Expect = 0.49
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 2  IIGAGISGLTLAASLGHR--GIQSCVLEKKDQLS 33
          IIG GI GL+ A  L  R  G +  VLEK+   +
Sbjct: 7  IIGGGIVGLSTAMQLQERYPGARIAVLEKESGPA 40


>gnl|CDD|181412 PRK08401, PRK08401, L-aspartate oxidase; Provisional.
          Length = 466

 Score = 30.9 bits (70), Expect = 0.51
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDS 35
          I+G G++GLT A SL  +G    ++    + S+S
Sbjct: 6  IVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNS 39


>gnl|CDD|149204 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
           oxidoreductase.  This family includes both class I and
           class II oxidoreductases and also NADH oxidases and
           peroxidases. This domain is actually a small NADH
           binding domain within a larger FAD binding domain.
          Length = 277

 Score = 30.0 bits (68), Expect = 1.00
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 1   MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLE 59
           +++G G  GL LAA+L   G +  V+E++D+L  +    +I       L+ +G +  L 
Sbjct: 140 VVVGGGYIGLELAAALAKLGAEVTVVERRDRL-LARADDEIRAALLEKLEELGGVIVLL 197


>gnl|CDD|161671 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase.  The gene
          is known as glf, ceoA, and rfbD. It is known
          experimentally in E. coli, Mycobacterium tuberculosis,
          and Klebsiella pneumoniae.
          Length = 377

 Score = 30.1 bits (68), Expect = 1.1
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 1  MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32
          +I+GAG+SG+ LA  L     +  V+EK++ +
Sbjct: 5  IIVGAGLSGIVLANILAQLNKRVLVVEKRNHI 36


>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein.  This
          family includes lycopene beta and epsilion cyclases
          (which form beta and delta carotene, respectively) from
          bacteria and plants as well as the plant
          capsanthin/capsorubin and neoxanthin cyclases which
          appear to have evolved from the plant lycopene
          cyclases. The plant lycopene epsilon cyclases also
          transform neurosporene to alpha zeacarotene.
          Length = 388

 Score = 30.1 bits (68), Expect = 1.1
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32
          +IG G +GL +A  L   G++  ++E    +
Sbjct: 4  VIGGGPAGLAIALELARPGLRVQLIEPHPPI 34


>gnl|CDD|131777 TIGR02730, carot_isom, carotene isomerase.  Members of this
          family, including sll0033 (crtH) of Synechocystis sp.
          PCC 6803, catalyze a cis-trans isomerization of
          carotenes to the all-trans lycopene, a reaction that
          can also occur non-enzymatically in light through
          photoisomerization.
          Length = 493

 Score = 29.8 bits (67), Expect = 1.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 1  MIIGAGISGLTLAASLGHRGIQSCVLEK 28
          ++IG+GI GL  A  L  +G +  VLE+
Sbjct: 4  IVIGSGIGGLVTATQLAVKGAKVLVLER 31


>gnl|CDD|183296 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A;
           Provisional.
          Length = 457

 Score = 29.8 bits (68), Expect = 1.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32
           +IGAG +GLT A  L  +G    + E +D+ 
Sbjct: 145 VIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175


>gnl|CDD|180019 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase
          subunit B; Validated.
          Length = 422

 Score = 29.4 bits (67), Expect = 1.4
 Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 1  MIIGAGISGLTLAASLGHRGIQSCVL 26
          ++IG G++GLT A +    G +   L
Sbjct: 6  LVIGGGLAGLTAALAAAEAG-KRVAL 30


>gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin
           reductase subunit; Provisional.
          Length = 396

 Score = 29.5 bits (66), Expect = 1.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 1   MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32
           +I+GAG  GL LAAS   R  +  V+E    +
Sbjct: 148 VIVGAGTIGLELAASATQRRCKVTVIELAATV 179


>gnl|CDD|178280 PLN02676, PLN02676, polyamine oxidase.
          Length = 487

 Score = 29.3 bits (66), Expect = 1.7
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%)

Query: 1  MIIGAGISGLTLAASLGHRGIQSCV-LEKKDQL 32
          +I+GAG+SG++ A +L   GI+  + LE  D++
Sbjct: 30 IIVGAGMSGISAAKTLSEAGIEDILILEATDRI 62


>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed.
          Length = 549

 Score = 28.7 bits (65), Expect = 2.3
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 18/69 (26%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQI-----------SPNASRILK 50
          ++GAG++GL  AA L   G +  +L   DQ +++  G Q            SP      +
Sbjct: 9  VVGAGLAGLVAAAELADAGKRVLLL---DQENEANLGGQAFWSLGGLFLVDSPEQ----R 61

Query: 51 RIGILDQLE 59
          R+GI D LE
Sbjct: 62 RLGIKDSLE 70


>gnl|CDD|178181 PLN02568, PLN02568, polyamine oxidase.
          Length = 539

 Score = 28.6 bits (64), Expect = 2.6
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 5/37 (13%)

Query: 1  MIIGAGISGLTLA-----ASLGHRGIQSCVLEKKDQL 32
          +IIGAG++GLT A     +S  +   +  V+E  D++
Sbjct: 9  VIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRI 45


>gnl|CDD|132407 TIGR03364, HpnW_proposed, FAD dependent oxidoreductase TIGR03364.
           This clade of FAD dependent oxidoreductases (members
          of the pfam01266 family) is syntenically associated
          with a family of proposed phosphonatase-like enzymes
          (TIGR03351) and is also found (less frequently) in
          association with phosphonate transporter components. A
          likely role for this enzyme involves the oxidative
          deamination of an aminophosphonate differring slightly
          from 2-aminoethylphosphonate, possibly
          1-hydroxy-2-aminoethylphosphonate (see the comments for
          TIGR03351). Many members of the larger FAD dependent
          oxidoreductase family act as amino acid oxidative
          deaminases.
          Length = 365

 Score = 28.8 bits (65), Expect = 2.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31
          I+GAGI GL  A +   RG+   V+E+  +
Sbjct: 5  IVGAGILGLAHAYAAARRGLSVTVIERSSR 34


>gnl|CDD|178188 PLN02576, PLN02576, protoporphyrinogen oxidase.
          Length = 496

 Score = 28.4 bits (64), Expect = 2.7
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 2  IIGAGISGLTLAASLG-HRGIQSCVLEKKD 30
          ++GAG+SGL  A +L    G+   V E +D
Sbjct: 17 VVGAGVSGLAAAYALASKHGVNVLVTEARD 46


>gnl|CDD|178082 PLN02463, PLN02463, lycopene beta cyclase.
          Length = 447

 Score = 28.5 bits (64), Expect = 2.9
 Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 27/112 (24%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRI----LKRIGILDQ 57
           ++G G +GL +A  +   G+  C ++             I PN   +     + +G+LD 
Sbjct: 33  VVGGGPAGLAVAQQVSEAGLSVCCIDPSPLS--------IWPNNYGVWVDEFEALGLLDC 84

Query: 58  LEDIWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILL 109
           L+  W  P   V+      K+L R              YG V R  L+  +L
Sbjct: 85  LDTTW--PGAVVYIDDGKKKDLDR-------------PYGRVNRKKLKSKML 121


>gnl|CDD|182113 PRK09853, PRK09853, putative selenate reductase subunit YgfK;
           Provisional.
          Length = 1019

 Score = 28.4 bits (64), Expect = 2.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLEKKD 30
           +IGAG +GL  A  L   G    V E+++
Sbjct: 544 VIGAGPAGLAAAYFLARAGHPVTVFEREE 572


>gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism
           associated alcohol dehydrogenase.  This clade of
           zinc-binding alcohol dehydrogenases (members of
           pfam00107) are repeatedly associated with genes proposed
           to be involved with the catabolism of phosphonate
           compounds.
          Length = 280

 Score = 28.2 bits (63), Expect = 3.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 1   MIIGAGISGLTLAASLGHRGI 21
           +++GAG+ GLT AA+    G 
Sbjct: 125 LVVGAGMLGLTAAAAAAAAGA 145


>gnl|CDD|162312 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase.  The motif
           GGXCXXXGCXP near the N-terminus contains a redox-active
           disulfide.
          Length = 461

 Score = 28.4 bits (64), Expect = 3.6
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGI 54
           IIG G+ G+  A+     G +  V+E  D++   G   ++S   ++ LK+ G+
Sbjct: 175 IIGGGVIGIEFASIFASLGSKVTVIEMLDRIL-PGEDAEVSKVVAKALKKKGV 226


>gnl|CDD|163112 TIGR03026, NDP-sugDHase, nucleotide sugar dehydrogenase.  All of
          these enzymes contain three Pfam domains, pfam03721,
          pfam00984, and pfam03720 for the N-terminal, central,
          and C-terminal regions respectively.
          Length = 411

 Score = 28.0 bits (63), Expect = 4.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)

Query: 2  IIGAGISGLTLAASLGHRGIQ 22
          +IG G  GL LAA L   G +
Sbjct: 5  VIGLGYVGLPLAALLADLGHE 25


>gnl|CDD|179650 PRK03803, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
          synthetase; Provisional.
          Length = 448

 Score = 28.0 bits (63), Expect = 4.6
 Identities = 9/30 (30%), Positives = 19/30 (63%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31
          ++G G +GL++   L  +GI   V++ ++Q
Sbjct: 11 VVGLGKTGLSVVRFLARQGIPFAVMDSREQ 40


>gnl|CDD|171762 PRK12839, PRK12839, hypothetical protein; Provisional.
          Length = 572

 Score = 27.9 bits (62), Expect = 4.8
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query: 1  MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32
          +++G+G  GL+ A +  + G +  V+EK    
Sbjct: 12 VVVGSGAGGLSAAVAAAYGGAKVLVVEKASTC 43


>gnl|CDD|183785 PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed.
          Length = 574

 Score = 27.7 bits (62), Expect = 5.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 1  MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32
          ++IG+G  GL+ A +    G+   VLEK+   
Sbjct: 13 LVIGSGAGGLSAAITARKLGLDVVVLEKEPVF 44


>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large
           subunit. 
          Length = 785

 Score = 27.5 bits (61), Expect = 5.2
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKR 51
           +IG G+ GL  A  L + G+   V+     L       Q+   A R+L+R
Sbjct: 145 VIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK----QLDQTAGRLLQR 190


>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional.
          Length = 464

 Score = 27.7 bits (62), Expect = 5.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLE 27
           +IG+G +GLT A  L   G    + E
Sbjct: 145 VIGSGPAGLTCAGDLAKMGYDVTIFE 170


>gnl|CDD|178558 PLN02976, PLN02976, amine oxidase.
          Length = 1713

 Score = 27.5 bits (61), Expect = 5.9
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 1   MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32
           +++GAG +GLT A  L  +G    VLE + ++
Sbjct: 697 IVVGAGPAGLTAARHLQRQGFSVTVLEARSRI 728


>gnl|CDD|183739 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol
           hydroxylase/glutamate synthase subunit beta;
           Provisional.
          Length = 752

 Score = 27.4 bits (61), Expect = 6.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLE 27
           +IG+G +GL+ A  L  RG    V E
Sbjct: 436 VIGSGPAGLSFAGDLAKRGYDVTVFE 461


>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
          Length = 413

 Score = 27.3 bits (60), Expect = 6.9
 Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 126 ITHPDCTQISKINNQKPDLLVGADGLNSNIRHYIDT--QPITFS--GDVVLRCLIPQNNA 181
           I H  C  I       P ++  A G  +  +  +D+      F   G V   C   +NN 
Sbjct: 155 IDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNK 214

Query: 182 PEFIDFQSVNIFFGPDSHLVTYPLREDNTI 211
               D   + I  G D +++     E+ TI
Sbjct: 215 I---DIVRLFIKRGADCNIMFMIEGEECTI 241


>gnl|CDD|183763 PRK12810, gltD, glutamate synthase subunit beta; Reviewed.
          Length = 471

 Score = 27.4 bits (62), Expect = 7.0
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 7/42 (16%)

Query: 2   IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSG----FGI 39
           ++G+G +GL  A  L   G +  V E+ D++   G    +GI
Sbjct: 148 VVGSGPAGLAAADQLARAGHKVTVFERADRI---GGLLRYGI 186


>gnl|CDD|183735 PRK12771, PRK12771, putative glutamate synthase (NADPH) small
           subunit; Provisional.
          Length = 564

 Score = 27.1 bits (61), Expect = 7.8
 Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 3/21 (14%)

Query: 2   IIGAGISGLTLA---ASLGHR 19
           +IG G +GL+ A     +GH 
Sbjct: 142 VIGGGPAGLSAAYHLRRMGHA 162


>gnl|CDD|180546 PRK06370, PRK06370, mercuric reductase; Validated.
          Length = 463

 Score = 27.1 bits (61), Expect = 8.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEKKD 30
          +IGAG +G  LAA     G++  ++E+  
Sbjct: 10 VIGAGQAGPPLAARAAGLGMKVALIERGL 38


>gnl|CDD|183734 PRK12770, PRK12770, putative glutamate synthase subunit beta;
          Provisional.
          Length = 352

 Score = 26.9 bits (60), Expect = 9.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 2  IIGAGISGLTLAASLGHRGIQSCVLEK 28
          IIGAG +GL  A  L   G +  V +K
Sbjct: 23 IIGAGPAGLAAAGYLACLGYEVHVYDK 49


>gnl|CDD|183411 PRK12293, hisZ, ATP phosphoribosyltransferase regulatory subunit;
           Provisional.
          Length = 281

 Score = 26.9 bits (60), Expect = 9.4
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 7/34 (20%)

Query: 205 LREDNTINMVFVSSKHTLKDISFLKRSEIHKEWF 238
           LR D+T+++V + +K        L RS  HK+WF
Sbjct: 73  LRADSTLDVVRIVTKR-------LGRSTEHKKWF 99


>gnl|CDD|181909 PRK09496, trkA, potassium transporter peripheral membrane
           component; Reviewed.
          Length = 453

 Score = 26.6 bits (60), Expect = 9.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 1   MIIGAGISGLTLAASLGHRGIQSCVLEK 28
           MI+G G  G  LA  L   G    ++E+
Sbjct: 235 MIVGGGNIGYYLAKLLEKEGYSVKLIER 262


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.323    0.138    0.424 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,259,669
Number of extensions: 400115
Number of successful extensions: 999
Number of sequences better than 10.0: 1
Number of HSP's gapped: 963
Number of HSP's successfully gapped: 143
Length of query: 380
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 285
Effective length of database: 3,941,713
Effective search space: 1123388205
Effective search space used: 1123388205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.3 bits)