RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780168|ref|YP_003064581.1| monooxygenase FAD-binding protein [Candidatus Liberibacter asiaticus str. psy62] (380 letters) >gnl|CDD|180582 PRK06475, PRK06475, salicylate hydroxylase; Provisional. Length = 400 Score = 221 bits (564), Expect = 3e-58 Identities = 105/390 (26%), Positives = 179/390 (45%), Gaps = 17/390 (4%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60 +I GAG++GL+ A L RG ++EK +LS+ G G+Q++PNA R L+R+G+ D+L Sbjct: 6 LIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSG 65 Query: 61 IWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARL 120 + P+ G + L + +R W Y V R LQ LL+ + P + Sbjct: 66 TGVTPKALYLMDGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEI 125 Query: 121 HLSTHITHPDCTQIS-KINNQKPD--------LLVGADGLNSNIRHYIDTQPITFSGDVV 171 L +T T S + + L+ DG+ S +R FSG + Sbjct: 126 KLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSMLRAKAGFSKARFSGHIA 185 Query: 172 LRCLIPQNNAPE-----FIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDIS 226 R + + P + ++V+ + G +H + YP++ N V ++ ++ Sbjct: 186 WRTTLAADALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNFVAITGGENPGEVW 245 Query: 227 FLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAH 286 + H + +W++ ++Q++ I++ +PLFE + + +GDA+H Sbjct: 246 SKTGDKAHLKSIYA---DWNKPVLQILAAIDEWTYWPLFEMADAQFVGPDRTIFLGDASH 302 Query: 287 TLLPFAAQGANMAIEDAYALSYLLGKKTIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHM 346 + PFAAQGA MAIEDA AL+ L A + + VR R+ + R +LN+ +H Sbjct: 303 AVTPFAAQGAAMAIEDAAALAEALDSDDQSAGLKRFDSVRKERIAAVAKRGQLNRFAYHA 362 Query: 347 HRPASLFRNAGLRLGIHKPLHKSLDWIYQY 376 +L RN + + K LDW+Y Y Sbjct: 363 TGIFALGRNMLFAIRSPESFLKDLDWLYGY 392 >gnl|CDD|181262 PRK08163, PRK08163, salicylate hydroxylase; Provisional. Length = 396 Score = 169 bits (429), Expect = 1e-42 Identities = 104/400 (26%), Positives = 174/400 (43%), Gaps = 37/400 (9%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60 +I+G GI GL A +L +GI+ +LE+ ++ + G GIQ+ PNA L +G+ + Sbjct: 8 LIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQ 67 Query: 61 IWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARL 120 + + +E+ R R +G Y V+ R + LL + PL Sbjct: 68 RAVFTDHLTMMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEF 127 Query: 121 HLSTHIT--HPDCTQISKINNQ----KPDLLVGADGLNSNIR-HYIDTQPITFSGDVVLR 173 STH+ D ++ + Q D L+G DG+ S +R + P +G VV R Sbjct: 128 RTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSVVRQSLVGDAP-RVTGHVVYR 186 Query: 174 CLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKRSEI 233 +I ++ PE + + ++ GP HLV YPLR N+V ++F R + Sbjct: 187 AVIDVDDMPEDLRINAPVLWAGPHCHLVHYPLRGGEQYNLV----------VTFHSREQ- 235 Query: 234 HKEWFVKHLTNWHQEII-----------QLILQINDTHLYPLFECE-CKHWHNKKNAVLI 281 +EW VK + +E++ Q++ + + + E W + L+ Sbjct: 236 -EEWGVKDGSK--EEVLSYFEGIHPRPRQMLDKPTSWKRWATADREPVAKWSTGR-VTLL 291 Query: 282 GDAAHTLLPFAAQGANMAIEDAYALSYLLGK--KTIPAAISAYQKVRAVRVKRIRYRTKL 339 GDAAH + + AQGA MA+EDA L L AA + Y+ VR R R+ + Sbjct: 292 GDAAHPMTQYMAQGACMALEDAVTLGKALEGCDGDAEAAFALYESVRIPRTARVVLSARE 351 Query: 340 NQLLFHMHRPASLFRNAGLRLGIHKPLHKSLDWIYQYKIP 379 ++H RN + + + +L+W+Y +K Sbjct: 352 MGRIYHAKGVERQVRNLLWKGRTQEQFYDALEWLYGWKED 391 >gnl|CDD|180727 PRK06847, PRK06847, hypothetical protein; Provisional. Length = 375 Score = 127 bits (321), Expect = 5e-30 Identities = 96/363 (26%), Positives = 148/363 (40%), Gaps = 62/363 (17%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDI 61 I+G GI GL+ A +L GI ++E + G GI + NA R L+ +G+LD+ + Sbjct: 9 IVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEA 68 Query: 62 WIEPEDFVFR--SGSTLKELS--RFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPL 117 + G+ L EL R + + GI R L +IL + + Sbjct: 69 GFGFDGVDLFDPDGTLLAELPTPRLAGDDLPGGG--GIM----RPALARILADAAR-AAG 121 Query: 118 ARLHLSTHITHPD---------CTQISKINNQKPDLLVGADGLNSNIRHYI---DTQPIT 165 A + L T +T + + + + DL+VGADGL S +R + + +P Sbjct: 122 ADVRLGTTVTAIEQDDDGVTVTFSDGTT---GRYDLVVGADGLYSKVRSLVFPDEPEP-E 177 Query: 166 FSGDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTY-PLREDNTINM-VFVSSKHTLK 223 ++G V R ++P+ E + + + PL ED M +FV+ Sbjct: 178 YTGQGVWRAVLPR--PAEVDRS----LMYLGPTTKAGVVPLSED---LMYLFVTEPRP-- 226 Query: 224 DISFLKRSEIHKEWFVKHLTNW-----HQEIIQLILQINDTH--LYPLFECECKH----- 271 I + L + +L QI D +Y E Sbjct: 227 -----DNPRIEPDTLAALLRELLAPFGGPVLQELREQITDDAQVVYRPLE---TLLVPAP 278 Query: 272 WHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKK-TIPAAISAYQKVRAVRV 330 WH + VLIGDAAH P AQGA MAIEDA L+ L + ++ AA+ AY R R Sbjct: 279 WH-RGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELARHDSLEAALQAYYARRWERC 337 Query: 331 KRI 333 + + Sbjct: 338 RMV 340 >gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional. Length = 373 Score = 109 bits (274), Expect = 1e-24 Identities = 84/396 (21%), Positives = 154/396 (38%), Gaps = 46/396 (11%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60 IIGAGI GLT AA L +G + V EK + + + G GI I N + L + +++ Sbjct: 4 AIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKN 63 Query: 61 IWIEPEDFVFRS--GSTLKELSR-FSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPL 117 G+ L ++ + N + + R TL I+ ++++ + Sbjct: 64 AGQILSTMNLLDDKGTLLNKVKLKSNTLNVT----------LHRQTLIDIIKSYVKEDAI 113 Query: 118 ARLHLSTHITHPDCTQISKINNQ---KPDLLVGADGLNSNIRHYIDTQP-ITFSGDVVLR 173 T I + + DL +GADG++S +R ++ + + G R Sbjct: 114 FTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKVRQSVNADSKVRYQGYTCFR 173 Query: 174 CLIPQ---NNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKR 230 LI ++ FG PL + + +++K +D + Sbjct: 174 GLIDDIDLKLPDCAKEYWGTKGRFG------IVPLLNNQAYWFITINAKE--RDPKY--- 222 Query: 231 SEIHKEWFVKHLTNWHQEIIQLILQINDTH--------LYPLFECECKHWHNKKNAVLIG 282 S K + ++ E+ +++ + ++T L PL K + VL+G Sbjct: 223 SSFGKPHLQAYFNHYPNEVREILDKQSETGILHHDIYDLKPL-----KSFVY-GRIVLLG 276 Query: 283 DAAHTLLPFAAQGANMAIEDAYALSYLLGKKTIPAAISAYQKVRAVRVKRIRYRT-KLNQ 341 DAAH P QGA A+EDA L+ L A+ Y K+R ++ R+ K+ + Sbjct: 277 DAAHATTPNMGQGAGQAMEDAIVLANCLNAYDFEKALQRYDKIRVKHTAKVIKRSRKIGK 336 Query: 342 LLFHMHRPASLFRNAGLRLGIHKPLHKSLDWIYQYK 377 + + RN ++ + ++Y+ K Sbjct: 337 IAQIESKLLVALRNRVMKRMPNALAAGQTKFLYKSK 372 >gnl|CDD|132263 TIGR03219, salicylate_mono, salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. Length = 414 Score = 109 bits (274), Expect = 1e-24 Identities = 102/415 (24%), Positives = 166/415 (40%), Gaps = 58/415 (13%) Query: 2 IIGAGISGLTLAASL-GHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQ--- 57 IIG GI+G+ LA +L H + + E + G G+ NA R + +G+ + Sbjct: 5 IIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQ 64 Query: 58 --------LEDIWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILL 109 +DIW E +R+GS L +++ V R LL Sbjct: 65 VADSTPAPWQDIWFE-----WRNGSDASYLGATIAPGVGQSS-------VHRADFLDALL 112 Query: 110 NHI-QTQPLARLHLSTHITHPDCTQISKINNQ--KPDLLVGADGLNSNIRHYI------D 160 H+ + + + Q+ + + DLL+GADG+ S +R Y+ Sbjct: 113 KHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSALRDYVLQGQGQA 172 Query: 161 TQPITFSGDVVLRCLIPQNNAPEFIDFQSVN--------IFFGPDSHLVTYPLREDNTIN 212 FSG R L+ E ++ ++ G D H++T+P+R+ IN Sbjct: 173 PVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYLGLDGHILTFPVRQGRLIN 232 Query: 213 MV-FVSSKHTLK-----DISFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFE 266 +V F+S + K D +++ E + + W L+ I L+ L + Sbjct: 233 VVAFISDRSQPKPTWPSDTPWVR--EATQREMLDAFAGWGDAARALLECIPAPTLWALHD 290 Query: 267 CECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGK-----KTIPAAISA 321 + LIGDAAH +LP GA +EDAY L+ LLG +PA + A Sbjct: 291 LAELPGYVHGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAGDLPALLEA 350 Query: 322 YQKVRAVRVKRIRYRTKLNQLLFHMHRPASLFRNAGLRLGIHKPLHKSLDWIYQY 376 Y VR R R++ ++ L+ + PA LG H L DW++ + Sbjct: 351 YDDVRRPRACRVQRTSREAGELYELRDPAVGADEE--LLGAH--LATRFDWLWNH 401 >gnl|CDD|162642 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF. Length = 385 Score = 106 bits (268), Expect = 8e-24 Identities = 105/401 (26%), Positives = 159/401 (39%), Gaps = 58/401 (14%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKD--QLSDSGFGIQ---ISPNASRILKRIGILD 56 I+G G+ GL LA +L G++ ++E + GF + +S + R+L+++G+ D Sbjct: 4 IVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWD 63 Query: 57 QLEDIWIEP-ED-FVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQT 114 ++E +P D V GS F G Y VV+ LQ+ L +Q Sbjct: 64 KIEPDRAQPIRDIHVSDGGSFGA--LHFDADEIGLEALG--Y-VVENRVLQQALWERLQE 118 Query: 115 QPLARLH----LSTHITHPDCTQISKINNQ--KPDLLVGADGLNSNIRH--YIDTQ--PI 164 P L + H D +++ + Q + LLVGADG NS +R I T Sbjct: 119 YPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANSKVRQLAGIPTTGWDY 178 Query: 165 TFSGDV-VLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKH--- 220 S V ++ P ++ F P L PL DN ++V+ Sbjct: 179 GQSAVVANVKHERPHQG----TAWE----RFTPTGPLALLPL-PDNRSSLVWTLPPEEAE 229 Query: 221 TLKDISFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHN--KKNA 278 L +S E F+ L + I + + H +PL H Sbjct: 230 RLLALSD--------EEFLAELQRAFGSRLGAITLVGERHAFPL---SLTHAKRYVAPRL 278 Query: 279 VLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGK-----KTI--PAAISAYQKVRAV-RV 330 LIGDAAHT+ P A QG N+ + D AL+ +L + I P + Y++ R Sbjct: 279 ALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFDNA 338 Query: 331 KRIRYRTKLNQLLFHMH-RPASLFRNAGLRLGIHKPLHKSL 370 + LN+ LF P L RN GLRL P K+ Sbjct: 339 AMLGATDGLNR-LFSNDFPPLRLLRNLGLRLLNLLPPLKNF 378 >gnl|CDD|181023 PRK07538, PRK07538, hypothetical protein; Provisional. Length = 413 Score = 94.6 bits (236), Expect = 4e-20 Identities = 95/370 (25%), Positives = 153/370 (41%), Gaps = 71/370 (19%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDI 61 I G GI GLTLA +L RGI+ V E +L G GI + P+A R L +G+LD L+ I Sbjct: 5 IAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAI 64 Query: 62 WIEPEDFVF--RSGSTLKELSRFSCKNYS--RNNWGGIYGV----VKRHTLQKILLN--- 110 I + + R G + +S R G Y + R LQ +LL+ Sbjct: 65 GIRTRELAYFNRHGQRI----------WSEPRGLAAG-YDWPQYSIHRGELQMLLLDAVR 113 Query: 111 ------HIQT-QPLARLHLSTHIT--HPDCTQISKINNQKPDLLVGADGLNSNIRH--YI 159 ++T + +T + + + D+L+GADG++S +R Y Sbjct: 114 ERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQLYP 173 Query: 160 DTQPITFSGDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTY----PLREDNTINMVF 215 D P ++G ++ R + AP F+ +S+ + D LV Y P+ D + + Sbjct: 174 DEGPPRWNGVMMWRGVTE---APPFLTGRSMVMAGHLDGKLVVYPISEPVDADGRQLINW 230 Query: 216 VSSKHTLKDISFLKRS---EIHKEWFVKHLTNWHQEII---------QLILQINDTHLYP 263 V+ + + E F+ H +W + + + I + YP Sbjct: 231 VAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRAAEAIYE------YP 284 Query: 264 LFECEC-----KHW-HNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSY-LLGKKTIP 316 + W + L+GDAAH + P + GA+ AI DA AL+ L Sbjct: 285 M----VDRDPLPRWTRGR--VTLLGDAAHPMYPVGSNGASQAILDARALADALAAHGDPE 338 Query: 317 AAISAYQKVR 326 AA++AY+ R Sbjct: 339 AALAAYEAER 348 >gnl|CDD|162640 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. Length = 382 Score = 90.8 bits (226), Expect = 5e-19 Identities = 90/378 (23%), Positives = 149/378 (39%), Gaps = 35/378 (9%) Query: 2 IIGAGISGLTLAASLGHRG-IQSCVLEKKD----QLSDSGFGIQISPNASRILKRIGILD 56 I+G G+ GL+LA +L G I+ ++E Q + +S + +IL+++G+ Sbjct: 4 IVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWP 63 Query: 57 QLEDIWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQP 116 +L P + S + + G Y VV+ L + LL+ + Sbjct: 64 KLAPF-ATPILDIHVSDQGHFGATHLRASEFGLPALG--Y-VVELADLGQALLSRLALLT 119 Query: 117 LARLH----LSTHITHPDCTQISKINNQ--KPDLLVGADGLNSNIRH--YIDTQPITFSG 168 +L+ I + D +++ N Q + LL+ ADG NS +R I T+ + Sbjct: 120 NIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANSKVRELLSIPTEEHDY-N 178 Query: 169 DVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFL 228 L I + F+ F P L PL+++ ++V+ I+ L Sbjct: 179 QTALIANIRHEQPHQGCAFER----FTPHGPLALLPLKDNYRSSLVWCLPSKQADTIANL 234 Query: 229 KRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPL-FECECKHWHNKKNAVLIGDAAHT 287 +E F+ L + I Q+ + YPL H H + VLIG+AA T Sbjct: 235 PDAE-----FLAELQQAFGWRLGKITQVGERKTYPLKLRIAETHVHPR--VVLIGNAAQT 287 Query: 288 LLPFAAQGANMAIEDAYALSYLLGKKTIP----AAISAYQKVRAV-RVKRIRYRTKLNQL 342 L P A QG N+ + D L+ +L I A + Y + R + I LN+L Sbjct: 288 LHPIAGQGFNLGLRDVETLAEVLIDARIDLGTYALLQEYLRRRQFDQFITIGLTDGLNRL 347 Query: 343 LFHMHRPASLFRNAGLRL 360 + RN GL Sbjct: 348 FSNHIPLLRALRNLGLLA 365 >gnl|CDD|136171 PRK07045, PRK07045, putative monooxygenase; Reviewed. Length = 388 Score = 74.6 bits (183), Expect = 4e-14 Identities = 85/386 (22%), Positives = 147/386 (38%), Gaps = 53/386 (13%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60 +I G+GI+G+ LA LG RG V+E+ + + P+ +++ +G+LD Sbjct: 9 LINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDD--- 65 Query: 61 IWIEPEDFVFRSGSTLK-ELSRFSCK------NYSRNNWGGIYGVVKRHTLQKILLNHIQ 113 VF +G + + + K +Y + G + ++ L+++LL + Sbjct: 66 --------VFAAGGLRRDAMRLYHDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLD 117 Query: 114 TQPLARLHLSTHITH--------PDCTQISKINNQKPDLLVGADGLNSNIRHYI------ 159 P RL T I +S P +LVGADG S IR + Sbjct: 118 GLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMIRDDVLRMPAE 177 Query: 160 ---DTQPITFSGDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFV 216 P+ F + + N ++D +F YP+ + T +V Sbjct: 178 RVPYATPMAFGTIALTDSVRECNRL--YVDSNQGLAYF--------YPIGDQAT-RLVVS 226 Query: 217 SSKHTLKDISFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKK 276 ++ + + + + + I L PL +H K+ Sbjct: 227 FPADEMQGYLADTTRTKLLARLNEFVGDESADAMAAIGAGTAFPLIPLGRMNLDRYH-KR 285 Query: 277 NAVLIGDAAHTLLPFAAQGANMAIEDAYALS-----YLLGKKTIPAAISAYQKVR-AVRV 330 N VL+GDAAH++ P QG N+AIEDA L +L G+ + A+ ++++R V Sbjct: 286 NVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQIALADALERFERIRRPVNE 345 Query: 331 KRIRYRTKLNQLLFHMHRPASLFRNA 356 I Y L + FR+ Sbjct: 346 AVISYGHALATTYHDRAALVANFRSQ 371 >gnl|CDD|168408 PRK06126, PRK06126, hypothetical protein; Provisional. Length = 545 Score = 74.3 bits (183), Expect = 5e-14 Identities = 79/370 (21%), Positives = 121/370 (32%), Gaps = 105/370 (28%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNAS----RI---LKRIGI 54 I+G G GL LA LG RG+ S ++E+KD G +P A+ R +R+GI Sbjct: 12 IVGGGPVGLALALDLGRRGVDSILVERKD-------GTAFNPKANTTSARSMEHFRRLGI 64 Query: 55 LDQLEDIWIEPEDF----VFRSGSTLKELSRFSCKNYSR-------NNWGGIYGVVKRHT 103 D++ + P D+ + + T EL+RF + S G + + Sbjct: 65 ADEVRSAGL-PVDYPTDIAYFTRLTGYELARF--RLPSAREAITPVGGPDGSWPSPELPH 121 Query: 104 ------LQKILLNHIQTQPLARLHL--------------STHITHPDCTQISKINNQKPD 143 L+ ILL H QP L + + D + I + D Sbjct: 122 RIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTI---RAD 178 Query: 144 LLVGADGLNSNIRHYIDTQPITFSGDVVLRCLIPQN---NAPEF---IDFQSVN--IFFG 195 LVG DG S +R + I++ G L+ + AP + F Sbjct: 179 YLVGCDGARSAVRRSLG---ISYEGTSGLQR--DLSIYIRAPGLAALVGHDPAWMYWLFN 233 Query: 196 PDSHLVTYPLREDNTINMVFVSSKHTLKDI---SFLKRSEIHKEWFVKHLTNWHQEIIQL 252 PD V I+ +D L+ E + + Sbjct: 234 PDRRGVLVA------ID---------GRDEWLFHQLRGGEDEFTIDDVDARAF------V 272 Query: 253 ILQINDTHLYPLFECE---CKHWH---------NKKNAVLIGDAAHTLLPFAAQGANMAI 300 + + + E W + L GDAAH P G N I Sbjct: 273 RRGVGED-----IDYEVLSVVPWTGRRLVADSYRRGRVFLAGDAAHLFTPTGGYGMNTGI 327 Query: 301 EDAYALSYLL 310 DA L++ L Sbjct: 328 GDAVNLAWKL 337 >gnl|CDD|168629 PRK06617, PRK06617, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated. Length = 374 Score = 73.0 bits (179), Expect = 1e-13 Identities = 91/341 (26%), Positives = 145/341 (42%), Gaps = 40/341 (11%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFG----IQISPNASRILKRIGILD 56 +I+G G+SG+ A S +GI++ + E K S F ++P++ L I I + Sbjct: 5 VILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWE 64 Query: 57 QLEDIWIEPEDF--VFRSGSTLKELSRFSCKNYSRNNWGGIYG-VVKRHTLQKILLNHIQ 113 +LE E +D V S + +L RN+ + G VVK +KILL+ I Sbjct: 65 ELEKFVAEMQDIYVVDNKASEILDL---------RNDADAVLGYVVKNSDFKKILLSKIT 115 Query: 114 TQPLARL----HLSTHITHPDCTQISKINNQ-KPDLLVGADGLNSNIRHYIDTQPITFSG 168 PL L I+H D + I + Q K +LL+ DG NS +R + I Sbjct: 116 NNPLITLIDNNQYQEVISHNDYSIIKFDDKQIKCNLLIICDGANSKVRSHYFANEIEKPY 175 Query: 169 DVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFL 228 L I E + F P PL++ ++++ +S I L Sbjct: 176 QTALTFNIKHEKPHENCAMEH----FLPLGPFALLPLKDQYASSVIWSTSSDQAALIVNL 231 Query: 229 KRSEIHKEWFVKHLT--NWHQEIIQLILQINDTHLYPL-FECECKHWHNKKNAVLIGDAA 285 E V+ LT N + ++ + ++ +PL +++HN+ VLI D A Sbjct: 232 PVEE------VRFLTQRNAGNSLGKITID-SEISSFPLKARIANRYFHNR--IVLIADTA 282 Query: 286 HTLLPFAAQGANMAIEDAYALSYLLGKKTIPAAISAYQKVR 326 HT+ P A QG N I+D LS ++ + YQK+R Sbjct: 283 HTVHPLAGQGLNQGIKDIEILSMIVSNN---GTLQEYQKLR 320 >gnl|CDD|169028 PRK07588, PRK07588, hypothetical protein; Provisional. Length = 391 Score = 69.8 bits (171), Expect = 1e-12 Identities = 69/318 (21%), Positives = 131/318 (41%), Gaps = 24/318 (7%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDI 61 I GAGI+G TLA L G + ++E+ +L G+ + + KR+GI DQL + Sbjct: 5 ISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREA 64 Query: 62 W--IEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLAR 119 IE V T + + + ++ R G + + R L + I Q Sbjct: 65 GYQIEHVRSV---DPTGRRKADLNVDSFRRMV-GDDFTSLPRGDLAAAIYTAIDGQ--VE 118 Query: 120 LHLSTHIT----HPD--CTQISKINNQKPDLLVGADGLNSNIRHYI---DTQPITFSGDV 170 I H D + + DL++GADGL+S++R + + + G Sbjct: 119 TIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSHVRRLVFGPERDFEHYLGCK 178 Query: 171 VLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKR 230 V C++ P D ++ ++ + LR D T+ + ++H ++ + Sbjct: 179 VAACVV-DGYRPR--DERTYVLYNEVGRQVARVALRGDRTLFLFIFRAEHDNPPLTPAEE 235 Query: 231 SEIHKEWFVKHLTNWH-QEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLL 289 ++ ++ F W +I+ + + D + + + W ++ L+GDAA Sbjct: 236 KQLLRDQFGD--VGWETPDILAALDDVEDLYFDVVSQIRMDRW-SRGRVALVGDAAACPS 292 Query: 290 PFAAQGANMAIEDAYALS 307 +G+ +AI +AY L+ Sbjct: 293 LLGGEGSGLAITEAYVLA 310 >gnl|CDD|162643 TIGR01989, COQ6, Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone. Length = 437 Score = 62.1 bits (151), Expect = 2e-10 Identities = 81/383 (21%), Positives = 125/383 (32%), Gaps = 90/383 (23%) Query: 2 IIGAGISGLTLAASLGH-----------------RGIQSCVLEKKDQLSDSGFGIQISPN 44 I+G G GL LAA+LG+ ++S EK D + I+P Sbjct: 5 IVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRV-SSITPA 63 Query: 45 ASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTL 104 + K+IG D ++ I+P + L RF N + + +++ + Sbjct: 64 SISFFKKIGAWDHIQSDRIQPFGRMQVWDGCSLALIRFDRDNGKED----MACIIENDNI 119 Query: 105 QKILLNHIQTQPLARLHLSTHITHPDCT---------------QISKINNQKPDLLVGAD 149 Q L N +Q + + T +S LL+GAD Sbjct: 120 QNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGAD 179 Query: 150 GLNSNIRHYIDTQPITFSGD---VV--LRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYP 204 G NSN+R + ++ + VV L+ N + F GP + L P Sbjct: 180 GSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLPT----GPIALL---P 232 Query: 205 LREDNTINMVFVSSKHTLKDISFLKRSEIHKEWFVKHLTN-----WHQ---------EII 250 L DN +V+ +S L + E FV L + + Sbjct: 233 L-PDNNSTLVWSTSPEEALR---LLS--LPPEDFVDALNAAFDLGYSDHPYSYLLDYAME 286 Query: 251 QLILQI-------NDTHLYP------------LFECECKHWHN--KKNAVLIGDAAHTLL 289 +L I P F H K L+GDAAH + Sbjct: 287 KLNEDIGFRTEGSKSCFQVPPRVIGVVDKSRAAFPLGLGHADEYVTKRVALVGDAAHRVH 346 Query: 290 PFAAQGANMAIEDAYALSYLLGK 312 P A QG N+ D +L L + Sbjct: 347 PLAGQGVNLGFGDVASLVKALAE 369 >gnl|CDD|181326 PRK08255, PRK08255, salicylyl-CoA 5-hydroxylase; Reviewed. Length = 765 Score = 61.9 bits (151), Expect = 2e-10 Identities = 61/218 (27%), Positives = 95/218 (43%), Gaps = 47/218 (21%) Query: 143 DLLVGADGLNSNIR-HYIDTQPITFSGDVVLRCLIPQNNAPEFI------DFQSVNIFFG 195 DL++ +DGLNS IR Y DT F D+ R + F+ F + F Sbjct: 131 DLVIASDGLNSRIRTRYADT----FQPDIDTR----RCR---FVWLGTHKVFDAFTFAFE 179 Query: 196 PDSH----LVTYPLREDNTINMVFVSSKHTLKDISFLKRSEIH-----KEWFVKHLTNWH 246 H Y +D+T + + + + + S+ ++ F +L + H Sbjct: 180 ETEHGWFQAHAYRF-DDDTSTFIVETPEEVWRAAGLDEMSQEESIAFCEKLFADYL-DGH 237 Query: 247 QEIIQLILQINDTHL-------YPLFECE-CKHWHNKKNAVLIGDAAHTLLPFA-AQGAN 297 L N +HL +P CE HW+ + VL+GDAAHT F+ G Sbjct: 238 P------LMSNASHLRGSAWINFPRVVCERWVHWNRRVPVVLMGDAAHT-AHFSIGSGTK 290 Query: 298 MAIEDAYALSYLLGK--KTIPAAISAYQKVRAVRVKRI 333 +A+EDA L+ L + +PAA++AY++ R V V RI Sbjct: 291 LALEDAIELARCLHEHPGDLPAALAAYEEERRVEVLRI 328 >gnl|CDD|181565 PRK08850, PRK08850, 2-octaprenyl-6-methoxyphenol hydroxylase; Validated. Length = 405 Score = 59.8 bits (145), Expect = 1e-09 Identities = 87/332 (26%), Positives = 142/332 (42%), Gaps = 53/332 (15%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGI-------QISPNASRILKRIGI 54 IIG G+ GL LAA+L ++ V+E QL + +S ++ IL+ +G Sbjct: 9 IIGGGMVGLALAAALKESDLRIAVIE--GQLPEEALNELPDVRVSALSRSSEHILRNLGA 66 Query: 55 LDQLEDIWIEPEDF--VFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHI 112 +E P V+ S + F ++ ++ + G I V+ +Q LL + Sbjct: 67 WQGIEARRAAPYIAMEVWEQDSFAR--IEFDAESMAQPDLGHI---VENRVIQLALLEQV 121 Query: 113 QTQPLARLHLSTHITHPDCTQIS--------KINNQK---PDLLVGADGLNSNIRHYIDT 161 Q Q L + C I+ ++N + L+VGADG NS +R +D Sbjct: 122 QKQDNVTLLMPAR-----CQSIAVGESEAWLTLDNGQALTAKLVVGADGANSWLRRQMDI 176 Query: 162 QPIT-----FSGDVV-LRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVF 215 P+T S V +R + P N+ I F P L P+ E N ++V+ Sbjct: 177 -PLTHWDYGHSALVANVRTVDPHNSVARQI--------FTPQGPLAFLPMSEPNMSSIVW 227 Query: 216 VSSKHTLKDISFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNK 275 S L+ + L S+ E F K LT + L + + +PL + + + Sbjct: 228 --STEPLRAEALLAMSD---EQFNKALTAEFDNRLGLCEVVGERQAFPLKMRYARDF-VR 281 Query: 276 KNAVLIGDAAHTLLPFAAQGANMAIEDAYALS 307 + L+GDAAHT+ P A QG N+ + DA +L+ Sbjct: 282 ERVALVGDAAHTIHPLAGQGVNLGLLDAASLA 313 >gnl|CDD|180902 PRK07236, PRK07236, hypothetical protein; Provisional. Length = 386 Score = 57.6 bits (140), Expect = 4e-09 Identities = 52/224 (23%), Positives = 87/224 (38%), Gaps = 46/224 (20%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKK-DQLSDSGFGIQISPNASRILKRIGILDQLED 60 +IG + GL A L G V E+ +L G GI + P R L G+ D Sbjct: 11 VIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGV-ALPAD 69 Query: 61 IWIEPEDFVF--RSGSTLKELS---RFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQ 115 I + + ++ R G ++ + +W +Y ++ Sbjct: 70 IGVPSRERIYLDRDGRVVQRRPMPQTQT-------SWNVLYRALRAAF------------ 110 Query: 116 PLARLHLSTHIT--HPDCTQIS-KINN---QKPDLLVGADGLNSNIRHYI--DTQPITFS 167 P R HL + D +++ + + + DLLVGADG S +R + D +P T++ Sbjct: 111 PAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTVRAQLLPDVRP-TYA 169 Query: 168 GDVVLRCLIPQNNAPEFIDFQSVNIFF-------GPDSHLVTYP 204 G V R L+ + P ++ GP SH++ YP Sbjct: 170 GYVAWRGLVDEAALPP----EARAALRDRFTFQLGPGSHILGYP 209 Score = 38.0 bits (89), Expect = 0.004 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 278 AVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKKT--IPAAISAYQKVRAVRVKRI 333 L+GDAA P A G A DA AL+ L I AA++A++ R I Sbjct: 307 VALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAAGDIDAALAAWEAERLAVGAAI 364 >gnl|CDD|180451 PRK06185, PRK06185, hypothetical protein; Provisional. Length = 407 Score = 54.1 bits (131), Expect = 6e-08 Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 25/203 (12%) Query: 143 DLLVGADGLNSNIRHY--IDTQPITFSGDVV-LRCLIPQNNAPEFIDFQSVNIFFGPDSH 199 DL+VGADG +S +R ++ + DV+ R +P+ P+ D +S+ FGP Sbjct: 159 DLVVGADGRHSRVRALAGLEVREFGAPMDVLWFR--LPR--EPD--DPESLMGRFGPGQG 212 Query: 200 LVTYPLREDNTINMVFVSSKHTLKDISFLKRSEIHKEWFVKHLTN---WHQEIIQLILQI 256 L+ R D +V K L+ + + E F + + + + + Sbjct: 213 LIMID-RGD-YWQCGYVIPKGGYAA---LRAAGL--EAFRERVAELAPELADRVAELKSW 265 Query: 257 NDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKK--- 313 +D L + + WH + + IGDAAH + P G N+AI+DA A + +L + Sbjct: 266 DDVKLLDVRVDRLRRWH-RPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRR 324 Query: 314 --TIPAAISAYQKVRAVRVKRIR 334 ++A Q+ R + + Sbjct: 325 GRVSDRDLAAVQRRREFPTRVTQ 347 Score = 41.0 bits (97), Expect = 5e-04 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEK-KDQLSDSGF-GIQISPNASRILKRIGILDQLE 59 I+G G +G+ L L G+ VLEK D L D F G + P+ ++ +G+L++ Sbjct: 11 IVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRD--FRGDTVHPSTLELMDELGLLERFL 68 Query: 60 DI 61 ++ Sbjct: 69 EL 70 >gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family protein; Provisional. Length = 388 Score = 54.2 bits (131), Expect = 6e-08 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 7/98 (7%) Query: 280 LIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKKTIPAAI------SAYQKVRAVRVKRI 333 L+GDAAH + P A QG N+ + D AL+ +L + + Y++ R + + Sbjct: 284 LVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFRDLGDLRLLRRYERARREDILAL 343 Query: 334 RYRTKLNQLLFHMHRPASLF-RNAGLRLGIHKPLHKSL 370 + T Q LF + P + + RNAG+ L PL K Sbjct: 344 QVATDGLQRLFALPGPLARWLRNAGMALVGALPLVKRW 381 Score = 31.8 bits (73), Expect = 0.32 Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 5/63 (7%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL--SDSGFGIQI---SPNASRILKRIGILD 56 ++G G+ G +LA +L G++ +L + +D + ++ SP++ L+R+G+ Sbjct: 10 VVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQ 69 Query: 57 QLE 59 L+ Sbjct: 70 ALD 72 >gnl|CDD|181564 PRK08849, PRK08849, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional. Length = 384 Score = 53.2 bits (128), Expect = 1e-07 Identities = 91/402 (22%), Positives = 152/402 (37%), Gaps = 80/402 (19%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKK-----DQLSDSGFGIQ-ISPNASRILKRIGIL 55 ++G G+ G A +G V+E + + IS + +L+ +G Sbjct: 8 VVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAW 67 Query: 56 DQLEDIWIEPEDFVFRSGSTLKE---LSRFSCKNYSRNNWGGIYGVVKRHTLQKIL---- 108 + + + P ++ T + +RF + + G I V+ +Q L Sbjct: 68 SSIVAMRVCP----YKRLETWEHPECRTRFHSDELNLDQLGYI---VENRLIQLGLWQQF 120 Query: 109 -----LNHIQTQPLARLHLSTHITHPDCTQISKINNQKPDLLVGADGLNSNIRHYIDTQP 163 L + + LA L S + + + ++GADG NS +R Sbjct: 121 AQYPNLTLMCPEKLADLEFSAEG---NRVTLESGAEIEAKWVIGADGANSQVRQLAGIG- 176 Query: 164 ITFSGDVVLRCLI-------PQNNAPEFIDFQSVNIFF--GPDSHLVTYPLREDNTINMV 214 IT + D C++ PQ + I +Q F GP S L PL N ++V Sbjct: 177 IT-AWDYRQHCMLINVETEQPQQD----ITWQQ---FTPSGPRSFL---PLC-GNQGSLV 224 Query: 215 FVSSKHTLKDISFLKRSEIHKE---WFVKHLTNWHQEIIQLILQINDTHLYPLFECECKH 271 + S +K +S + ++ E F L +LQ +PL + Sbjct: 225 WYDSPKRIKQLSAMNPEQLRSEILRHFPAELGEIK------VLQHGS---FPLTRRHAQQ 275 Query: 272 WHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKKTI--PAAISAYQKVRAVR 329 + K N VL+GDAAHT+ P A QG N+ +D L K+ + A+ + Y++ R R Sbjct: 276 YV-KNNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEKQGVLNDASFARYERRR--R 332 Query: 330 VKRIR--------YRTKLNQLLFHMHRPASLFRNAGLRLGIH 363 + Y+T N L P RNA L+L + Sbjct: 333 PDNLLMQTGMDLFYKTFSNSLT-----PLKFVRNAALKLAEN 369 >gnl|CDD|168201 PRK05714, PRK05714, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional. Length = 405 Score = 51.8 bits (124), Expect = 3e-07 Identities = 104/419 (24%), Positives = 154/419 (36%), Gaps = 86/419 (20%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCV-----LEKKDQLSDSGFGIQISP--NAS-RILKRI 52 +I+GAG+ G LA +L G++ + L K + F ++S AS RIL+R+ Sbjct: 6 LIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERL 65 Query: 53 GILDQLEDIWIEP-EDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNH 111 G D + P + GS ++ FS + G I V+ +Q LL Sbjct: 66 GAWDGIAARRASPYSEMQVWDGSGTGQI-HFSAASVHAEVLGHI---VENRVVQDALLER 121 Query: 112 IQTQ-----PLARLHLSTH------ITHPDCTQISKINNQKPDLLVGADGLNSNIRHYID 160 + ARL +T D Q+ + L+V ADG NS +R Sbjct: 122 LHDSDIGLLANARLEQMRRSGDDWLLTLADGRQL------RAPLVVAADGANSAVRRLAG 175 Query: 161 TQPITFSGDVV-------LRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNT--- 210 T D + +RC P +Q F D L PL D Sbjct: 176 CA--TREWDYLHHAIVTSVRCSEPHRATA----WQR----FTDDGPLAFLPLERDGDEHW 225 Query: 211 INMVFVSSKH------TLKDISFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPL 264 ++V+ ++ L D +F E E + +L + PL Sbjct: 226 CSIVWSTTPEEAERLMALDDDAFCAALERAFEGRLGE-----------VLSADPRLCVPL 274 Query: 265 FECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKKTIPAAISAYQK 324 + K + A LIGDAAHT+ P A QG N+ DA L+ +L A ++ Sbjct: 275 RQRHAKRYVEPGLA-LIGDAAHTIHPLAGQGVNLGFLDAAVLAEVL-----LHAAERGER 328 Query: 325 VRAVRV--KRIRYRTKLN----------QLLFHMHR-PASLFRNAGLRLGIHKPLHKSL 370 + VRV + R R N + LF P RN GL+L P K+L Sbjct: 329 LADVRVLSRFERRRMPHNLALMAAMEGFERLFQADPLPLRWLRNTGLKLVDQMPEAKAL 387 >gnl|CDD|180449 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase; Validated. Length = 538 Score = 50.3 bits (121), Expect = 8e-07 Identities = 47/181 (25%), Positives = 73/181 (40%), Gaps = 34/181 (18%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDI 61 I+GAG GLTLA LG G++ VLE+ L D + I A R+L+ IG+ D++ Sbjct: 15 IVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPH 74 Query: 62 WIEPEDFVFRS--GSTLKELSRFSCKNYSRNNWGGIYGVVKR-----HTLQKILLNHIQT 114 F G L E++R S G +G +R L+ +L + Sbjct: 75 TTPNHGMRFLDAKGRCLAEIARPS---------TGEFGWPRRNAFHQPLLEAVLRAGLAR 125 Query: 115 QPLARL--------------HLSTHITHPDCTQISKINNQKPDLLVGADGLNSNIRHYID 160 P R+ ++ +T D Q + + +VG DG NS +R + Sbjct: 126 FPHVRVRFGHEVTALTQDDDGVTVTLTDAD-GQRETV---RARYVVGCDGANSFVRRTLG 181 Query: 161 T 161 Sbjct: 182 V 182 Score = 40.7 bits (96), Expect = 7e-04 Identities = 17/31 (54%), Positives = 20/31 (64%) Query: 280 LIGDAAHTLLPFAAQGANMAIEDAYALSYLL 310 L GDAAH + PFA QG N I DA L++ L Sbjct: 290 LAGDAAHLMPPFAGQGMNSGIRDAANLAWKL 320 >gnl|CDD|180297 PRK05868, PRK05868, hypothetical protein; Validated. Length = 372 Score = 49.2 bits (117), Expect = 2e-06 Identities = 70/325 (21%), Positives = 130/325 (40%), Gaps = 34/325 (10%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60 ++ GA ++G A LG G ++E+ L G I + A +L+R+G+L ++ Sbjct: 5 VVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQE 64 Query: 61 --IWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGV---VKRHTLQKILLNHIQ-- 113 I FV R G+ EL R S G + + R L ++L Q Sbjct: 65 HKTRIRGASFVDRDGN---ELFR---DTESTPTGGPVNSPDIELLRDDLVELLYGATQPS 118 Query: 114 TQPLARLHLSTHITHPDCTQIS--KINNQKPDLLVGADGLNSNIRHYIDTQPITFSGDVV 171 + L +ST D +++ + ++ DL++GADGL+SN+R + F + Sbjct: 119 VEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSNVRRLVFGPEEQFVKRLG 178 Query: 172 LRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNT---INMVFVSS------KHTL 222 I P F++ + DS + +NT + F+ + + T Sbjct: 179 THAAI--FTVPNFLELDYWQTWHYGDSTMAGVYSARNNTEARAALAFMDTELRIDYRDTE 236 Query: 223 KDISFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIG 282 + L+R W +++ + D + + + W ++ L+G Sbjct: 237 AQFAELQRRMAEDGWV-------RAQLLHYMRSAPDFYFDEMSQILMDRW-SRGRVALVG 288 Query: 283 DAAHTLLPFAAQGANMAIEDAYALS 307 DA + P + QG ++A+ AY L+ Sbjct: 289 DAGYCCSPLSGQGTSVALLGAYILA 313 >gnl|CDD|181663 PRK09126, PRK09126, hypothetical protein; Provisional. Length = 392 Score = 48.4 bits (116), Expect = 3e-06 Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 16/167 (9%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKK--DQLSDSGFG---IQISPNASRILKRIGILD 56 ++GAG +GL+ A SL G++ ++E++ L+D F I ++ + IL+R+G D Sbjct: 8 VVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWD 67 Query: 57 QLEDIWIEP-EDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQ 115 ++ + I P D +G + L F + + G + V H +++ + Q Sbjct: 68 RIPEDEISPLRDAKVLNGRSPFAL-TFDARGRGADALGYL---VPNHLIRRAAYEAVSQQ 123 Query: 116 PLARLHLSTHITH----PDCTQISKINNQK--PDLLVGADGLNSNIR 156 L T +T D Q++ N ++ LLV AD S R Sbjct: 124 DGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSATR 170 Score = 34.1 bits (79), Expect = 0.065 Identities = 35/120 (29%), Positives = 47/120 (39%), Gaps = 21/120 (17%) Query: 260 HLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKKTIPAAI 319 H YPL + K+ A LIGDAA + P A G N+ ++ L+ + I AA Sbjct: 265 HAYPLVAVYAHRFVAKRFA-LIGDAAVGMHPVTAHGFNLGLKGQDILA-----RLILAAA 318 Query: 320 SAYQKVRAVRVKRIRYRTK---LNQLLFHM-----------HRPASLFRNAGLRLGIHKP 365 Q + A + RY K + L+H PA L R A LR P Sbjct: 319 RRGQDIGAASLLE-RYERKHRLATRPLYHATNAIAALYTDDRPPARLLRRAVLRAANRFP 377 >gnl|CDD|178515 PLN02927, PLN02927, antheraxanthin epoxidase/zeaxanthin epoxidase. Length = 668 Score = 48.6 bits (115), Expect = 3e-06 Identities = 102/436 (23%), Positives = 161/436 (36%), Gaps = 92/436 (21%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFG-----IQISPNASRILKRIGIL 55 ++ G GI GL A + +G V EK D + G G IQI NA L Sbjct: 85 LVAGGGIGGLVFALAAKKKGFDVLVFEK-DLSAIRGEGKYRGPIQIQSNA---------L 134 Query: 56 DQLEDIWIEPEDFVFRSGSTLKE-------------LSRFSCKNYSRNNWGGIYGVVKRH 102 LE I I+ + V +G + +F + + + V+ R Sbjct: 135 AALEAIDIDVAEQVMEAGCITGDRINGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRM 194 Query: 103 TLQKILLNHIQTQPLA-RLHLSTHITHPDCTQISKINNQK--PDLLVGADGLNSNIRHYI 159 TLQ+IL + + ++ D + N Q+ DLLVGADG+ S +R+ + Sbjct: 195 TLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWSKVRNNL 254 Query: 160 -DTQPITFSGDVVLRCLIPQNNAPEFI--DFQSVN--IFFGPDSHLVT----------YP 204 T+SG C +FI D +SV +F G + V+ Y Sbjct: 255 FGRSEATYSG---YTCY---TGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYA 308 Query: 205 LREDNTINMVFVSSKHTLKDISFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPL 264 E+ + + +K F EI W L H IL+ + P Sbjct: 309 FHEEPAGG---ADAPNGMKKRLF----EIFDGWCDNVLDLLHATEEDAILRRDIYDRSPG 361 Query: 265 FECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLG-------KKTIP- 316 F W K L+GD+ H + P QG MAIED++ L+ L + P Sbjct: 362 FT-----W-GKGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPV 415 Query: 317 ---AAISAYQKVRAVRVKRIRYRTKLNQLLFHMHR--------PASL---FR-----NAG 357 +++ Y++ R +RV I ++ ++ ++ P S FR G Sbjct: 416 DVVSSLKRYEESRRLRVAIIHAMARMAAIMASTYKAYLGVGLGPLSFLTKFRVPHPGRVG 475 Query: 358 LRLGIHKPLHKSLDWI 373 R + + LDW+ Sbjct: 476 GRFFVDIAMPLMLDWV 491 >gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional. Length = 388 Score = 46.8 bits (112), Expect = 1e-05 Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 13/95 (13%) Query: 275 KKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKKTI----PAAISAYQKVRAVRV 330 L+G+AAH P AQG N+ + D L ++ + A ++AY + R + Sbjct: 279 AGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRPEDPGSAAVLAAYDRARRPDI 338 Query: 331 KRIRYRTK----LNQ-LLFHMHRPASLFRNAGLRL 360 RT LN+ LL P R AGL L Sbjct: 339 LS---RTASVDLLNRSLLSDF-LPVQDLRAAGLHL 369 Score = 30.6 bits (70), Expect = 0.62 Identities = 8/19 (42%), Positives = 11/19 (57%) Query: 2 IIGAGISGLTLAASLGHRG 20 +IG G +GL A +L G Sbjct: 12 VIGGGPAGLAAAIALARAG 30 >gnl|CDD|180946 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated. Length = 415 Score = 46.6 bits (111), Expect = 1e-05 Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 21/169 (12%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKK--DQLSDSGFGIQISPNASRILKRIGILDQLE 59 I+G GI GLTLAA+L G++ ++E + + + G +S ++RI + IG+ +++ Sbjct: 23 IVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKIL 82 Query: 60 DIWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIY-GVVKRH-TLQKILLNHIQTQPL 117 I + S + + +F + G G V H L + L +Q+ P Sbjct: 83 P-QIGKFRQIRLSDADYPGVVKF-----QPTDLGTEALGYVGEHQVLLEALQEFLQSCPN 136 Query: 118 ARLH-----LSTHITHPDCTQISKINNQKP-----DLLVGADGLNSNIR 156 +S D ++ K L+V ADG S IR Sbjct: 137 ITWLCPAEVVSVE-YQQDAATVTLEIEGKQQTLQSKLVVAADGARSPIR 184 Score = 40.8 bits (96), Expect = 7e-04 Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 18/105 (17%) Query: 279 VLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKKTIPAAISAYQKVRAVRV-KRI-RYR 336 L+GDAAH P QG N+ I DA AL+ + + A + + ++ V KR R+R Sbjct: 297 ALVGDAAHCCHPVGGQGLNLGIRDAAALA-----QVLQTAHQRGEDIGSLAVLKRYERWR 351 Query: 337 TKLNQL----------LFHMHR-PASLFRNAGLRLGIHKPLHKSL 370 + N L LF P + R GL L H P K L Sbjct: 352 KRENWLILGFTDLLDRLFSNQWWPLVVVRRLGLWLLRHVPPLKRL 396 >gnl|CDD|183139 PRK11445, PRK11445, putative oxidoreductase; Provisional. Length = 351 Score = 46.6 bits (111), Expect = 1e-05 Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 26/171 (15%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGF----GIQISPNASRILKRIGILDQ 57 IIG G +G LA L + ++ ++KK Q GF G ++P+A + + G L Sbjct: 6 IIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDG-LTL 63 Query: 58 LEDIWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHT----LQKILLNHIQ 113 +D+ P+ F ++ L+R NY R+ + RH L+ ++ ++ Sbjct: 64 PKDVIANPQIFAVKTIDLANSLTR----NYQRSYIN-----IDRHKFDLWLKSLIPASVE 114 Query: 114 TQPLARLHLSTHITHPDCTQISKINNQ-----KPDLLVGADGLNSNIRHYI 159 + D + + LVGADG NS +R ++ Sbjct: 115 VYHNS--LCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSMVRRHL 163 >gnl|CDD|181243 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional. Length = 547 Score = 46.0 bits (110), Expect = 2e-05 Identities = 18/59 (30%), Positives = 30/59 (50%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60 ++GAG GL LA L +G+ +L+ D LS I + + I R+G +++ D Sbjct: 28 VVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVD 86 Score = 41.0 bits (97), Expect = 5e-04 Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 13/98 (13%) Query: 282 GDAAHTLLPFAAQGANMAIEDA----YALSYLLGKKTIPAAISAY--QKVRAVRVKRIRY 335 GDAAH + PF A+GAN I+DA + L+ +L + + + +Y ++ A + IR Sbjct: 305 GDAAHQVSPFGARGANSGIQDADNLAWKLALVLRGRAPDSLLDSYASEREFAAD-ENIRN 363 Query: 336 RTKLNQLLFHM--HRPAS-LFRNAGLRLGIHKPLHKSL 370 T+ F + P S LFR+A LRL P + L Sbjct: 364 STRSTD--F-ITPKSPVSRLFRDAVLRLARDHPFARRL 398 >gnl|CDD|162668 TIGR02032, GG-red-SF, geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. Length = 295 Score = 44.6 bits (106), Expect = 4e-05 Identities = 60/313 (19%), Positives = 112/313 (35%), Gaps = 44/313 (14%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDI 61 ++GAG +G + A L +G++ +LEKK G +SP R+L+ + + +L Sbjct: 5 VVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSP---RVLEELDLPLELIVN 61 Query: 62 WIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLH 121 + F +G +++ + V+ R + L Q A L Sbjct: 62 LVRGARFFSPNGDSVEIPIE-----------TELAYVIDRDAFDEQLAERAQEAG-AELR 109 Query: 122 LSTHITHPDCTQ---------ISKINNQKPDLLVGADGLNSNIRHYIDTQPITFSGDVVL 172 L T + D +++GADG S + + + V Sbjct: 110 LGTTVL--DVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSIVAKKLGLRKEPRELGVAA 167 Query: 173 RCLIPQNNAPEFIDFQSVNIFFG----PDSHLVTYPLREDNTINMVFVSSKHTLKDISFL 228 R + + DF V ++ P + +P + D T N V V S+ + Sbjct: 168 RAEVEMPDEEVDEDF--VEVYIDRGISPGGYGWVFP-KGDGTAN-VGVGSRSAEEGEDLK 223 Query: 229 KRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTL 288 K K++ + E +++I P+ + + N +L+GDAA + Sbjct: 224 K---YLKDFLARRPELKDAETVEVI-----GAPIPIGRPDD--KTVRGNVLLVGDAAGHV 273 Query: 289 LPFAAQGANMAIE 301 P +G A+ Sbjct: 274 KPLTGEGIYYAMR 286 >gnl|CDD|180227 PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated. Length = 395 Score = 42.9 bits (102), Expect = 1e-04 Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 9/114 (7%) Query: 253 ILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDAYALSYLLGK 312 I YPL L+G+AA TL P A QG N+ + D +L+ L + Sbjct: 260 ITHAGKRSAYPLALVTAAQ-QISHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQ 318 Query: 313 KTI-------PAAISAYQKVRAV-RVKRIRYRTKLNQLLFHMHRPASLFRNAGL 358 A + YQ+ R R I + L +L + P + RN GL Sbjct: 319 ALARGEDIGDYAVLQRYQQRRQQDREATIGFTDGLVRLFANRWAPLVVGRNLGL 372 Score = 31.7 bits (73), Expect = 0.29 Identities = 48/189 (25%), Positives = 75/189 (39%), Gaps = 42/189 (22%) Query: 1 MIIGAGISGLTLA---ASLGHRGIQSCVLEKKDQLSDS--GF---GIQISPNASRILKRI 52 +I+G G++G TLA + L H G+ ++E SD+ GF I ++ + L R+ Sbjct: 7 IIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARL 66 Query: 53 GILDQLEDIWIEPEDFVF-----RSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKI 107 G+ L D P + +G R ++Y G Y VV+ H + + Sbjct: 67 GVWQALADC-ATPITHIHVSDRGHAGFV-----RLDAEDYGVPALG--Y-VVELHDVGQR 117 Query: 108 LLNHIQTQPLARLHL------------STHITHPDCTQISKINNQKPDLLVGADGLNSNI 155 L + P LH S +T D ++ LLV ADG +S + Sbjct: 118 LFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTG------RLLVAADGSHSAL 171 Query: 156 RHY--IDTQ 162 R ID Q Sbjct: 172 REALGIDWQ 180 >gnl|CDD|180450 PRK06184, PRK06184, hypothetical protein; Provisional. Length = 502 Score = 43.0 bits (102), Expect = 1e-04 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 4/60 (6%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDS--GFGIQISPNASRILKRIGILDQL 58 +I+GAG +GLTLA L RG+ ++EK + G GIQ P + +G+LD++ Sbjct: 7 LIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQ--PRTQEVFDDLGVLDRV 64 Score = 39.6 bits (93), Expect = 0.001 Identities = 15/32 (46%), Positives = 19/32 (59%) Query: 280 LIGDAAHTLLPFAAQGANMAIEDAYALSYLLG 311 L GDAAH P QG N +++DAY L + L Sbjct: 285 LAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLA 316 >gnl|CDD|180935 PRK07333, PRK07333, 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional. Length = 403 Score = 41.5 bits (98), Expect = 3e-04 Identities = 14/27 (51%), Positives = 19/27 (70%) Query: 280 LIGDAAHTLLPFAAQGANMAIEDAYAL 306 L+GDAAH + P A QG N+ ++D AL Sbjct: 284 LVGDAAHGIHPIAGQGLNLGLKDVAAL 310 >gnl|CDD|181199 PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed. Length = 391 Score = 41.5 bits (98), Expect = 4e-04 Identities = 15/28 (53%), Positives = 18/28 (64%) Query: 279 VLIGDAAHTLLPFAAQGANMAIEDAYAL 306 L+GDAAHT+ P A QG N+ D AL Sbjct: 284 ALVGDAAHTINPLAGQGVNLGYRDVDAL 311 Score = 28.8 bits (65), Expect = 2.5 Identities = 43/170 (25%), Positives = 66/170 (38%), Gaps = 22/170 (12%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKK-----DQLSDSGFGIQ-ISPNASRILKRIGIL 55 I+G G+ G LA L G VLE D S I IS + +LK +G+ Sbjct: 10 IVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVW 69 Query: 56 DQLEDIWIEPEDFVFRSGSTLKELS---RFSCKNYSRNNWGGIYGVVKRHTLQKILLNHI 112 D ++ + P +R T + + F G Y V R LQ L + Sbjct: 70 DAVQAMRSHP----YRRLETWEWETAHVVFDAAELKLPELG--YMVENR-VLQLALWQAL 122 Query: 113 QTQPLARL----HLSTHITHPDCTQISKINNQK--PDLLVGADGLNSNIR 156 + P L L D +++ + ++ L++GADG NS +R Sbjct: 123 EAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQVR 172 >gnl|CDD|180788 PRK06996, PRK06996, hypothetical protein; Provisional. Length = 398 Score = 40.4 bits (95), Expect = 8e-04 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 279 VLIGDAAHTLLPFAAQGANMAIEDAYALSYLL-GKKTIPAAISAYQKVRAV 328 +G+AA TL P A QG N+ + DA+ L+ L P A++ + RA+ Sbjct: 294 AAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSDHGATPLALATFAARRAL 344 >gnl|CDD|179330 PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed. Length = 662 Score = 39.8 bits (94), Expect = 0.001 Identities = 13/31 (41%), Positives = 17/31 (54%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 IIG GI+G LA +L RG Q + E + Sbjct: 265 IIGGGIAGAALALALARRGWQVTLYEADEAP 295 >gnl|CDD|162991 TIGR02734, crtI_fam, phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. Length = 502 Score = 39.6 bits (93), Expect = 0.001 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 7/43 (16%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQ-------LSDSGF 37 +IGAG GL LA L GI V+E++D+ L D GF Sbjct: 3 VIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGF 45 >gnl|CDD|181197 PRK08013, PRK08013, oxidoreductase; Provisional. Length = 400 Score = 38.9 bits (91), Expect = 0.002 Identities = 15/28 (53%), Positives = 18/28 (64%) Query: 279 VLIGDAAHTLLPFAAQGANMAIEDAYAL 306 L+GDAAHT+ P A QG N+ DA L Sbjct: 285 ALVGDAAHTIHPLAGQGVNLGFMDAAEL 312 Score = 29.2 bits (66), Expect = 1.9 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%) Query: 144 LLVGADGLNSNIRHYIDTQPITF 166 L+VGADG NS +R+ D P+TF Sbjct: 159 LVVGADGANSWLRNKADI-PLTF 180 Score = 28.5 bits (64), Expect = 2.8 Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 6/63 (9%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKK---DQLSDSGFGIQISP-NAS--RILKRIGIL 55 I G G+ GL +A L G++ VLE++ +D+ +++S NA+ ++L R+G+ Sbjct: 8 IAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVW 67 Query: 56 DQL 58 + Sbjct: 68 QDI 70 >gnl|CDD|162990 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll. Length = 492 Score = 38.5 bits (90), Expect = 0.003 Identities = 16/31 (51%), Positives = 21/31 (67%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 +IGAGI+GLT AA L RG + +LE+ Q Sbjct: 6 VIGAGIAGLTAAALLAKRGYRVTLLEQHAQP 36 >gnl|CDD|181316 PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygenase; Validated. Length = 392 Score = 38.6 bits (91), Expect = 0.003 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 16/58 (27%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNA--SRILKRIGILDQ 57 IIGAG +GL L L GI S VLE++ S RI R G+L+Q Sbjct: 7 IIGAGPAGLLLGQLLHLAGIDSVVLERR------------SREYVEGRI--RAGVLEQ 50 Score = 35.9 bits (84), Expect = 0.016 Identities = 13/28 (46%), Positives = 17/28 (60%) Query: 280 LIGDAAHTLLPFAAQGANMAIEDAYALS 307 L GDAAH + P A+G N+A D L+ Sbjct: 283 LAGDAAHIVPPTGAKGLNLAASDVRYLA 310 >gnl|CDD|179767 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional. Length = 257 Score = 38.3 bits (90), Expect = 0.003 Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 17/65 (26%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFG------------IQISPNASRIL 49 I+GAG SGLT A L G++ V E+K LS FG I + A IL Sbjct: 30 IVGAGPSGLTAAYYLAKAGLKVAVFERK--LS---FGGGMWGGGMLFNKIVVQEEADEIL 84 Query: 50 KRIGI 54 GI Sbjct: 85 DEFGI 89 >gnl|CDD|180899 PRK07233, PRK07233, hypothetical protein; Provisional. Length = 434 Score = 38.3 bits (90), Expect = 0.004 Identities = 15/31 (48%), Positives = 18/31 (58%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 I+G GI+GL A L RG + V E DQL Sbjct: 4 IVGGGIAGLAAAYRLAKRGHEVTVFEADDQL 34 >gnl|CDD|178222 PLN02612, PLN02612, phytoene desaturase. Length = 567 Score = 36.7 bits (85), Expect = 0.009 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 19/116 (16%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL--------SDSG----FGIQI----SPN 44 +I GAG++GL+ A L G + +LE +D L + G G+ I PN Sbjct: 97 VIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPN 156 Query: 45 ASRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVK 100 + +GI D+L+ W E +F + E SRF GI+ +++ Sbjct: 157 VQNLFGELGINDRLQ--WKE-HSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILR 209 >gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase. Length = 435 Score = 36.6 bits (85), Expect = 0.012 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 5/51 (9%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL-----SDSGFGIQISPNAS 46 ++IG GI+G+ A +L + +LE +D++ +D FG + AS Sbjct: 4 IVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMGAS 54 >gnl|CDD|181140 PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrogenase; Reviewed. Length = 557 Score = 36.6 bits (85), Expect = 0.012 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 6/63 (9%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL----SDSGFGIQISPNASRILKRIGILDQ 57 ++G+G +G+ A + HRG+ + V+EK + SG G+ I PN +LKR G+ D Sbjct: 12 VVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTARSGGGVWI-PNNE-VLKRAGVPDT 69 Query: 58 LED 60 E Sbjct: 70 PEA 72 >gnl|CDD|161797 TIGR00275, TIGR00275, flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. Length = 400 Score = 36.4 bits (85), Expect = 0.014 Identities = 11/31 (35%), Positives = 17/31 (54%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 IIG G +GL A + G+ +LEK ++ Sbjct: 2 IIGGGAAGLMAAITAAREGLSVLLLEKNKKI 32 >gnl|CDD|181552 PRK08773, PRK08773, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated. Length = 392 Score = 35.6 bits (82), Expect = 0.019 Identities = 14/30 (46%), Positives = 19/30 (63%) Query: 281 IGDAAHTLLPFAAQGANMAIEDAYALSYLL 310 +GDAAH + P A QG N+ + D AL L+ Sbjct: 287 LGDAAHVVHPLAGQGVNLGLRDVAALQQLV 316 >gnl|CDD|181317 PRK08244, PRK08244, hypothetical protein; Provisional. Length = 493 Score = 35.1 bits (81), Expect = 0.027 Identities = 18/58 (31%), Positives = 31/58 (53%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQL 58 +IIG G GL LA+ L G+++CV+E+ + + + P IL G+L++ Sbjct: 6 IIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERF 63 Score = 34.3 bits (79), Expect = 0.053 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 4/80 (5%) Query: 280 LIGDAAHTLLPFAAQGANMAIEDAYALSYLLGKKTIPAA----ISAYQKVRAVRVKRIRY 335 L GDAAH P QG N+ ++DA L + L A + +Y R + Sbjct: 276 LAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKGWAPDWLLDSYHAERHPVGTALLR 335 Query: 336 RTKLNQLLFHMHRPASLFRN 355 T++ LF RP R+ Sbjct: 336 NTEVQTKLFDFTRPGLALRS 355 >gnl|CDD|131413 TIGR02360, pbenz_hydroxyl, 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. Length = 390 Score = 34.7 bits (80), Expect = 0.037 Identities = 14/31 (45%), Positives = 18/31 (58%) Query: 280 LIGDAAHTLLPFAAQGANMAIEDAYALSYLL 310 L GDAAH + P A+G N+A D + L L Sbjct: 283 LAGDAAHIVPPTGAKGLNLAASDVHYLYEAL 313 Score = 31.7 bits (72), Expect = 0.33 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 16/58 (27%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPN--ASRILKRIGILDQ 57 IIGAG SGL L L GI + +LE++ S + RI R G+L+Q Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILERQ------------SRDYVLGRI--RAGVLEQ 50 >gnl|CDD|183783 PRK12835, PRK12835, 3-ketosteroid-delta-1-dehydrogenase; Reviewed. Length = 584 Score = 34.8 bits (80), Expect = 0.042 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 6/65 (9%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSD----SGFGIQISPNASRILKRIGILD 56 +++G+G G+T A + RG+ + V+EK SG GI + P A +R G + Sbjct: 15 LVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGSTALSGGGIWV-PGAP-AQRREGYVP 72 Query: 57 QLEDI 61 ED+ Sbjct: 73 DPEDV 77 >gnl|CDD|185578 PTZ00367, PTZ00367, squalene epoxidase; Provisional. Length = 567 Score = 34.4 bits (79), Expect = 0.048 Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 27/164 (16%) Query: 191 NIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKRSEIHKEWFVKHL-TNWHQEI 249 +F G +++Y L +DN + ++ +K TL + ++SE E HL N + Sbjct: 255 TVFLGKTGPILSYRL-DDNELRVLVDYNKPTLPSLE--EQSEWLIEDVAPHLPENMRESF 311 Query: 250 I------QLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAIEDA 303 I + I + + P F K V IGD A+ P G D Sbjct: 312 IRASKDTKRIRSMPNARYPPAFPS-------IKGYVGIGDHANQRHPLTGGGMTCCFSDC 364 Query: 304 YALSYLLGKKTIPAAISAYQ--------KVRAVRVKRIRYRTKL 339 L+ L I + S Q ++A + R R Sbjct: 365 IRLAKSL--TGIKSLRSIDQNEMAEIEDAIQAAILSYARNRKTH 406 Score = 29.0 bits (65), Expect = 2.1 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLS--DSGFGIQISPNASRILKRIGILDQL 58 +I+G I+G LA +L +G + +LE +D S D G + P LK +G+ + Sbjct: 37 IIVGGSIAGPVLAKALSKQGRKVLMLE-RDLFSKPDRIVGELLQPGGVNALKELGMEECA 95 Query: 59 EDI 61 E I Sbjct: 96 EGI 98 >gnl|CDD|183787 PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrogenase; Reviewed. Length = 557 Score = 34.3 bits (79), Expect = 0.058 Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 6/64 (9%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSD----SGFGIQISPNASRILKRIGILD 56 +++G+G G+ A + G++ ++EK+D++ SG + + PN + ++K G+ D Sbjct: 10 VVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTAMSGGVLWL-PN-NPLMKAAGVPD 67 Query: 57 QLED 60 ED Sbjct: 68 SHED 71 >gnl|CDD|178566 PLN02985, PLN02985, squalene monooxygenase. Length = 514 Score = 34.1 bits (78), Expect = 0.069 Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60 +I+GAG+ G LA +L G + V+E+ + + G + P +L ++G+ D LE Sbjct: 47 IIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEG 106 Query: 61 I 61 I Sbjct: 107 I 107 >gnl|CDD|183358 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed. Length = 451 Score = 34.1 bits (79), Expect = 0.070 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 17/74 (22%) Query: 2 IIGAGISGLTLAASLGHRG--IQSCVLEKKDQL-------SDSGFGIQISPNA------- 45 IIG GI+GL+ A L +G +LE D+L GF I++ P + Sbjct: 5 IIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPS 64 Query: 46 -SRILKRIGILDQL 58 ++K +G+ D+L Sbjct: 65 APALVKELGLEDEL 78 >gnl|CDD|183509 PRK12409, PRK12409, D-amino acid dehydrogenase small subunit; Provisional. Length = 410 Score = 33.8 bits (78), Expect = 0.071 Identities = 13/27 (48%), Positives = 19/27 (70%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEK 28 +IGAGI+G+T A +L RG Q V ++ Sbjct: 6 VIGAGITGVTTAYALAQRGYQVTVFDR 32 >gnl|CDD|180718 PRK06834, PRK06834, hypothetical protein; Provisional. Length = 488 Score = 33.5 bits (77), Expect = 0.096 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 7/60 (11%) Query: 280 LIGDAAHTLLPFAAQGANMAIEDAYALSYLLG---KKTIPAA-ISAYQKVR---AVRVKR 332 L GDAAH P QG N ++DA L + L K T P + + Y R A RV R Sbjct: 269 LAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKGTSPESLLDTYHAERHPVAARVLR 328 >gnl|CDD|161807 TIGR00292, TIGR00292, thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. Length = 254 Score = 33.3 bits (76), Expect = 0.099 Identities = 15/29 (51%), Positives = 20/29 (68%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKK 29 +I+GAG SGLT A L G++ CVLE+ Sbjct: 25 IIVGAGPSGLTAAYYLAKNGLKVCVLERS 53 >gnl|CDD|131778 TIGR02731, phytoene_desat, phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. Length = 453 Score = 33.3 bits (76), Expect = 0.12 Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 19/97 (19%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL---------SDSGF---GIQI----SPNA 45 I GAG++GL+ A L G VLE +D L D + G+ I PN Sbjct: 4 IAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNM 63 Query: 46 SRILKRIGILDQLEDIWIEPEDFVFRSGSTLKELSRF 82 ++LK + I D+L+ W +F SRF Sbjct: 64 LQLLKELNIEDRLQ--WKS-HSMIFNQPDKPGTFSRF 97 >gnl|CDD|162664 TIGR02023, BchP-ChlP, geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). Length = 388 Score = 32.8 bits (75), Expect = 0.14 Identities = 64/332 (19%), Positives = 102/332 (30%), Gaps = 72/332 (21%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLEDI 61 +IG G SG T A +L GI++ +LE+ I P I + +E+ Sbjct: 5 VIGGGPSGATAAETLARAGIETILLERALS--------NIKPCGGAIPPCL-----IEEF 51 Query: 62 WIEPEDFVFRSGSTLKELSRFSCKNYSRN----NWGGIYGVVKRHTLQKILLNHIQTQ-- 115 I P+ + R + ++ S + G G+V+R L Q Sbjct: 52 DI-PDSLIDRR---VTQMRMISPSRVPIKVTIPSEDGYVGMVRREVFDSYLRERAQKAGA 107 Query: 116 -----PLARLHLSTHITHPDCTQISKINN-QKP----DLLVGADGLNSNIRHYIDTQPIT 165 +L K +K D+++GADG NS + + Sbjct: 108 ELIHGLFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKELGLPK-- 165 Query: 166 FSGDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLRED---------NTINMVFV 216 N P I +Q PD + Y D + VF Sbjct: 166 --------------NLPRVIAYQE--RIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFP 209 Query: 217 SSKHTLKDISFLKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKK 276 H I+ + H + N + Q P+ W + Sbjct: 210 KGDH----IAVGTGTGTHGFDAKQLQANLRRRAGLDGGQTIRREAAPIPMKPRPRWDFGR 265 Query: 277 NAVLIGDAAHTLLP-------FAAQGANMAIE 301 A+L+GDAA + P FA + MA + Sbjct: 266 -AMLVGDAAGLVTPASGEGIYFAMKSGQMAAQ 296 >gnl|CDD|180885 PRK07208, PRK07208, hypothetical protein; Provisional. Length = 479 Score = 32.2 bits (74), Expect = 0.25 Identities = 15/30 (50%), Positives = 16/30 (53%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 IIGAG +GLT A L RG VLE Sbjct: 9 IIGAGPAGLTAAYELLKRGYPVTVLEADPV 38 >gnl|CDD|181360 PRK08294, PRK08294, phenol 2-monooxygenase; Provisional. Length = 634 Score = 31.9 bits (73), Expect = 0.29 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Query: 279 VLI-GDAAHTLLPFAAQGANMAIEDAYALSYLLG 311 V I GDA HT A QG N++++D + L + L Sbjct: 342 VFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLA 375 Score = 29.2 bits (66), Expect = 2.0 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Query: 1 MIIGAGISGLTLAASLGH-RGIQSCVLEKKD 30 +I+G G +GLTLAA L I + ++E+K Sbjct: 36 LIVGCGPAGLTLAAQLSAFPDITTRIVERKP 66 >gnl|CDD|161930 TIGR00562, proto_IX_ox, protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. Length = 462 Score = 31.3 bits (71), Expect = 0.38 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 12/75 (16%) Query: 2 IIGAGISGLTLAASLG----HRGIQSCVLEKKDQL-------SDSGFGIQISPNASRILK 50 IIG GISGL A L ++ ++E D++ + G+ I+ P++ K Sbjct: 7 IIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERK 66 Query: 51 RIGILDQLEDIWIEP 65 + D ++D+ +E Sbjct: 67 K-SAPDLVKDLGLEH 80 >gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional. Length = 393 Score = 30.9 bits (71), Expect = 0.49 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 2 IIGAGISGLTLAASLGHR--GIQSCVLEKKDQLS 33 IIG GI GL+ A L R G + VLEK+ + Sbjct: 7 IIGGGIVGLSTAMQLQERYPGARIAVLEKESGPA 40 >gnl|CDD|181412 PRK08401, PRK08401, L-aspartate oxidase; Provisional. Length = 466 Score = 30.9 bits (70), Expect = 0.51 Identities = 12/34 (35%), Positives = 20/34 (58%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDS 35 I+G G++GLT A SL +G ++ + S+S Sbjct: 6 IVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNS 39 >gnl|CDD|149204 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 277 Score = 30.0 bits (68), Expect = 1.00 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLE 59 +++G G GL LAA+L G + V+E++D+L + +I L+ +G + L Sbjct: 140 VVVGGGYIGLELAAALAKLGAEVTVVERRDRL-LARADDEIRAALLEKLEELGGVIVLL 197 >gnl|CDD|161671 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae. Length = 377 Score = 30.1 bits (68), Expect = 1.1 Identities = 12/32 (37%), Positives = 21/32 (65%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 +I+GAG+SG+ LA L + V+EK++ + Sbjct: 5 IIVGAGLSGIVLANILAQLNKRVLVVEKRNHI 36 >gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. Length = 388 Score = 30.1 bits (68), Expect = 1.1 Identities = 9/31 (29%), Positives = 17/31 (54%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 +IG G +GL +A L G++ ++E + Sbjct: 4 VIGGGPAGLAIALELARPGLRVQLIEPHPPI 34 >gnl|CDD|131777 TIGR02730, carot_isom, carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization. Length = 493 Score = 29.8 bits (67), Expect = 1.2 Identities = 12/28 (42%), Positives = 18/28 (64%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEK 28 ++IG+GI GL A L +G + VLE+ Sbjct: 4 IVIGSGIGGLVTATQLAVKGAKVLVLER 31 >gnl|CDD|183296 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional. Length = 457 Score = 29.8 bits (68), Expect = 1.2 Identities = 12/31 (38%), Positives = 18/31 (58%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 +IGAG +GLT A L +G + E +D+ Sbjct: 145 VIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 >gnl|CDD|180019 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated. Length = 422 Score = 29.4 bits (67), Expect = 1.4 Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCVL 26 ++IG G++GLT A + G + L Sbjct: 6 LVIGGGLAGLTAALAAAEAG-KRVAL 30 >gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional. Length = 396 Score = 29.5 bits (66), Expect = 1.5 Identities = 13/32 (40%), Positives = 18/32 (56%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 +I+GAG GL LAAS R + V+E + Sbjct: 148 VIVGAGTIGLELAASATQRRCKVTVIELAATV 179 >gnl|CDD|178280 PLN02676, PLN02676, polyamine oxidase. Length = 487 Score = 29.3 bits (66), Expect = 1.7 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCV-LEKKDQL 32 +I+GAG+SG++ A +L GI+ + LE D++ Sbjct: 30 IIVGAGMSGISAAKTLSEAGIEDILILEATDRI 62 >gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed. Length = 549 Score = 28.7 bits (65), Expect = 2.3 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 18/69 (26%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQI-----------SPNASRILK 50 ++GAG++GL AA L G + +L DQ +++ G Q SP + Sbjct: 9 VVGAGLAGLVAAAELADAGKRVLLL---DQENEANLGGQAFWSLGGLFLVDSPEQ----R 61 Query: 51 RIGILDQLE 59 R+GI D LE Sbjct: 62 RLGIKDSLE 70 >gnl|CDD|178181 PLN02568, PLN02568, polyamine oxidase. Length = 539 Score = 28.6 bits (64), Expect = 2.6 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 5/37 (13%) Query: 1 MIIGAGISGLTLA-----ASLGHRGIQSCVLEKKDQL 32 +IIGAG++GLT A +S + + V+E D++ Sbjct: 9 VIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRI 45 >gnl|CDD|132407 TIGR03364, HpnW_proposed, FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. Length = 365 Score = 28.8 bits (65), Expect = 2.7 Identities = 12/30 (40%), Positives = 18/30 (60%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 I+GAGI GL A + RG+ V+E+ + Sbjct: 5 IVGAGILGLAHAYAAARRGLSVTVIERSSR 34 >gnl|CDD|178188 PLN02576, PLN02576, protoporphyrinogen oxidase. Length = 496 Score = 28.4 bits (64), Expect = 2.7 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Query: 2 IIGAGISGLTLAASLG-HRGIQSCVLEKKD 30 ++GAG+SGL A +L G+ V E +D Sbjct: 17 VVGAGVSGLAAAYALASKHGVNVLVTEARD 46 >gnl|CDD|178082 PLN02463, PLN02463, lycopene beta cyclase. Length = 447 Score = 28.5 bits (64), Expect = 2.9 Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 27/112 (24%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRI----LKRIGILDQ 57 ++G G +GL +A + G+ C ++ I PN + + +G+LD Sbjct: 33 VVGGGPAGLAVAQQVSEAGLSVCCIDPSPLS--------IWPNNYGVWVDEFEALGLLDC 84 Query: 58 LEDIWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILL 109 L+ W P V+ K+L R YG V R L+ +L Sbjct: 85 LDTTW--PGAVVYIDDGKKKDLDR-------------PYGRVNRKKLKSKML 121 >gnl|CDD|182113 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional. Length = 1019 Score = 28.4 bits (64), Expect = 2.9 Identities = 11/29 (37%), Positives = 16/29 (55%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKD 30 +IGAG +GL A L G V E+++ Sbjct: 544 VIGAGPAGLAAAYFLARAGHPVTVFEREE 572 >gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. Length = 280 Score = 28.2 bits (63), Expect = 3.2 Identities = 9/21 (42%), Positives = 14/21 (66%) Query: 1 MIIGAGISGLTLAASLGHRGI 21 +++GAG+ GLT AA+ G Sbjct: 125 LVVGAGMLGLTAAAAAAAAGA 145 >gnl|CDD|162312 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 461 Score = 28.4 bits (64), Expect = 3.6 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGI 54 IIG G+ G+ A+ G + V+E D++ G ++S ++ LK+ G+ Sbjct: 175 IIGGGVIGIEFASIFASLGSKVTVIEMLDRIL-PGEDAEVSKVVAKALKKKGV 226 >gnl|CDD|163112 TIGR03026, NDP-sugDHase, nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. Length = 411 Score = 28.0 bits (63), Expect = 4.5 Identities = 10/21 (47%), Positives = 12/21 (57%) Query: 2 IIGAGISGLTLAASLGHRGIQ 22 +IG G GL LAA L G + Sbjct: 5 VIGLGYVGLPLAALLADLGHE 25 >gnl|CDD|179650 PRK03803, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional. Length = 448 Score = 28.0 bits (63), Expect = 4.6 Identities = 9/30 (30%), Positives = 19/30 (63%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQ 31 ++G G +GL++ L +GI V++ ++Q Sbjct: 11 VVGLGKTGLSVVRFLARQGIPFAVMDSREQ 40 >gnl|CDD|171762 PRK12839, PRK12839, hypothetical protein; Provisional. Length = 572 Score = 27.9 bits (62), Expect = 4.8 Identities = 9/32 (28%), Positives = 18/32 (56%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 +++G+G GL+ A + + G + V+EK Sbjct: 12 VVVGSGAGGLSAAVAAAYGGAKVLVVEKASTC 43 >gnl|CDD|183785 PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed. Length = 574 Score = 27.7 bits (62), Expect = 5.2 Identities = 11/32 (34%), Positives = 18/32 (56%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 ++IG+G GL+ A + G+ VLEK+ Sbjct: 13 LVIGSGAGGLSAAITARKLGLDVVVLEKEPVF 44 >gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit. Length = 785 Score = 27.5 bits (61), Expect = 5.2 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKR 51 +IG G+ GL A L + G+ V+ L Q+ A R+L+R Sbjct: 145 VIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK----QLDQTAGRLLQR 190 >gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional. Length = 464 Score = 27.7 bits (62), Expect = 5.3 Identities = 10/26 (38%), Positives = 14/26 (53%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLE 27 +IG+G +GLT A L G + E Sbjct: 145 VIGSGPAGLTCAGDLAKMGYDVTIFE 170 >gnl|CDD|178558 PLN02976, PLN02976, amine oxidase. Length = 1713 Score = 27.5 bits (61), Expect = 5.9 Identities = 12/32 (37%), Positives = 20/32 (62%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQL 32 +++GAG +GLT A L +G VLE + ++ Sbjct: 697 IVVGAGPAGLTAARHLQRQGFSVTVLEARSRI 728 >gnl|CDD|183739 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional. Length = 752 Score = 27.4 bits (61), Expect = 6.2 Identities = 11/26 (42%), Positives = 15/26 (57%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLE 27 +IG+G +GL+ A L RG V E Sbjct: 436 VIGSGPAGLSFAGDLAKRGYDVTVFE 461 >gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional. Length = 413 Score = 27.3 bits (60), Expect = 6.9 Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 7/90 (7%) Query: 126 ITHPDCTQISKINNQKPDLLVGADGLNSNIRHYIDT--QPITFS--GDVVLRCLIPQNNA 181 I H C I P ++ A G + + +D+ F G V C +NN Sbjct: 155 IDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNK 214 Query: 182 PEFIDFQSVNIFFGPDSHLVTYPLREDNTI 211 D + I G D +++ E+ TI Sbjct: 215 I---DIVRLFIKRGADCNIMFMIEGEECTI 241 >gnl|CDD|183763 PRK12810, gltD, glutamate synthase subunit beta; Reviewed. Length = 471 Score = 27.4 bits (62), Expect = 7.0 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 7/42 (16%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSG----FGI 39 ++G+G +GL A L G + V E+ D++ G +GI Sbjct: 148 VVGSGPAGLAAADQLARAGHKVTVFERADRI---GGLLRYGI 186 >gnl|CDD|183735 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional. Length = 564 Score = 27.1 bits (61), Expect = 7.8 Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 3/21 (14%) Query: 2 IIGAGISGLTLA---ASLGHR 19 +IG G +GL+ A +GH Sbjct: 142 VIGGGPAGLSAAYHLRRMGHA 162 >gnl|CDD|180546 PRK06370, PRK06370, mercuric reductase; Validated. Length = 463 Score = 27.1 bits (61), Expect = 8.1 Identities = 10/29 (34%), Positives = 17/29 (58%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEKKD 30 +IGAG +G LAA G++ ++E+ Sbjct: 10 VIGAGQAGPPLAARAAGLGMKVALIERGL 38 >gnl|CDD|183734 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional. Length = 352 Score = 26.9 bits (60), Expect = 9.4 Identities = 12/27 (44%), Positives = 15/27 (55%) Query: 2 IIGAGISGLTLAASLGHRGIQSCVLEK 28 IIGAG +GL A L G + V +K Sbjct: 23 IIGAGPAGLAAAGYLACLGYEVHVYDK 49 >gnl|CDD|183411 PRK12293, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional. Length = 281 Score = 26.9 bits (60), Expect = 9.4 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 7/34 (20%) Query: 205 LREDNTINMVFVSSKHTLKDISFLKRSEIHKEWF 238 LR D+T+++V + +K L RS HK+WF Sbjct: 73 LRADSTLDVVRIVTKR-------LGRSTEHKKWF 99 >gnl|CDD|181909 PRK09496, trkA, potassium transporter peripheral membrane component; Reviewed. Length = 453 Score = 26.6 bits (60), Expect = 9.6 Identities = 10/28 (35%), Positives = 14/28 (50%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEK 28 MI+G G G LA L G ++E+ Sbjct: 235 MIVGGGNIGYYLAKLLEKEGYSVKLIER 262 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.323 0.138 0.424 Gapped Lambda K H 0.267 0.0635 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 6,259,669 Number of extensions: 400115 Number of successful extensions: 999 Number of sequences better than 10.0: 1 Number of HSP's gapped: 963 Number of HSP's successfully gapped: 143 Length of query: 380 Length of database: 5,994,473 Length adjustment: 95 Effective length of query: 285 Effective length of database: 3,941,713 Effective search space: 1123388205 Effective search space used: 1123388205 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 58 (26.3 bits)