BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780168|ref|YP_003064581.1| monooxygenase FAD-binding protein [Candidatus Liberibacter asiaticus str. psy62] (380 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780168|ref|YP_003064581.1| monooxygenase FAD-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 380 Score = 787 bits (2033), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/380 (100%), Positives = 380/380 (100%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED Sbjct: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60 Query: 61 IWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARL 120 IWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARL Sbjct: 61 IWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARL 120 Query: 121 HLSTHITHPDCTQISKINNQKPDLLVGADGLNSNIRHYIDTQPITFSGDVVLRCLIPQNN 180 HLSTHITHPDCTQISKINNQKPDLLVGADGLNSNIRHYIDTQPITFSGDVVLRCLIPQNN Sbjct: 121 HLSTHITHPDCTQISKINNQKPDLLVGADGLNSNIRHYIDTQPITFSGDVVLRCLIPQNN 180 Query: 181 APEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKRSEIHKEWFVK 240 APEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKRSEIHKEWFVK Sbjct: 181 APEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKRSEIHKEWFVK 240 Query: 241 HLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAI 300 HLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAI Sbjct: 241 HLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAI 300 Query: 301 EDAYALSYLLGKKTIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRPASLFRNAGLRL 360 EDAYALSYLLGKKTIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRPASLFRNAGLRL Sbjct: 301 EDAYALSYLLGKKTIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRPASLFRNAGLRL 360 Query: 361 GIHKPLHKSLDWIYQYKIPE 380 GIHKPLHKSLDWIYQYKIPE Sbjct: 361 GIHKPLHKSLDWIYQYKIPE 380 >gi|254780842|ref|YP_003065255.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Candidatus Liberibacter asiaticus str. psy62] Length = 384 Score = 49.7 bits (117), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 83/376 (22%), Positives = 141/376 (37%), Gaps = 35/376 (9%) Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60 +IIG+G++G A +G + ++ + L D + + LK I + D L+D Sbjct: 7 IIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGID-FLKEINVWDFLQD 65 Query: 61 I--------WIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHI 112 I ++ D + + + S + N + H L + I Sbjct: 66 IAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYN--------IPNHVLMESFAEKI 117 Query: 113 QTQPLAR----LHLSTHITHPDCTQISKINNQ-KPDLLVGADGLNSNIRHYIDTQPITFS 167 PL L I + T + Q L+G+DG NS++R + +S Sbjct: 118 SQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSSVRRQMGYGENKWS 177 Query: 168 GDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISF 227 L Q++ P + + V F + PLRE N ++V++ Sbjct: 178 YPQKALVLNFQHSMPH--NGRCVE-FHKSLGTITQIPLRE-NFSSLVWIMESQEADFYYK 233 Query: 228 LKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHT 287 L +EI + L + +I I + D ++ L H KK VL+G+AAH Sbjct: 234 LPVNEI-----ARRLEQYLYPVIGKIEVVTDVQIFQL-SGMISHCFGKKRVVLVGEAAHA 287 Query: 288 LLPFAAQGANMAIEDAYALSYLLGKK--TIPAAISAYQKV-RAVRVKRIRYRTKLNQLLF 344 L P QG N+++ D L L + + A + Y + R +KRI N+ LF Sbjct: 288 LPPICGQGLNLSMRDVIILLNLFQSEHMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLF 347 Query: 345 HMHRPASLFRNAGLRL 360 + + R L Sbjct: 348 SRYPLLQILRAGTFHL 363 >gi|255764489|ref|YP_003065094.2| stationary phase survival protein SurE [Candidatus Liberibacter asiaticus str. psy62] Length = 250 Score = 26.6 bits (57), Expect = 0.64, Method: Compositional matrix adjust. Identities = 12/51 (23%), Positives = 30/51 (58%), Gaps = 2/51 (3%) Query: 111 HIQTQPLARLHLSTHITHPDCTQIS--KINNQKPDLLVGADGLNSNIRHYI 159 +I + +++ + H T DC I+ K++++KPDL++ + +N +++ Sbjct: 51 NIACRTISKKRFAVHGTPVDCVVIALQKMSDKKPDLILSGVNVGTNTSNHV 101 >gi|254780217|ref|YP_003064630.1| DNA polymerase III subunit delta' [Candidatus Liberibacter asiaticus str. psy62] Length = 347 Score = 25.0 bits (53), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 6/47 (12%) Query: 290 PFAAQGANMAIEDAYALSYLLGKKTIPAAISAYQKVRAV-RVKRIRY 335 PF Q A+ A+ D LSY L KT ++ V V ++RIRY Sbjct: 79 PFVKQMASHALHDFLYLSYSLNPKT-----GKWRTVITVDEIRRIRY 120 >gi|254781148|ref|YP_003065561.1| hypothetical protein CLIBASIA_05275 [Candidatus Liberibacter asiaticus str. psy62] Length = 69 Score = 24.3 bits (51), Expect = 4.1, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 21/51 (41%) Query: 79 LSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP 129 LS FS K YSRNN Y + + LL QP+ + H P Sbjct: 2 LSDFSKKYYSRNNNSIYYFIGLEQEILGSLLLKGNLQPIISFLDAQHFIDP 52 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.323 0.138 0.424 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 253,937 Number of Sequences: 1233 Number of extensions: 10715 Number of successful extensions: 36 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 10 length of query: 380 length of database: 328,796 effective HSP length: 75 effective length of query: 305 effective length of database: 236,321 effective search space: 72077905 effective search space used: 72077905 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 39 (19.6 bits)