BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780168|ref|YP_003064581.1| monooxygenase FAD-binding
protein [Candidatus Liberibacter asiaticus str. psy62]
(380 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780168|ref|YP_003064581.1| monooxygenase FAD-binding protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 380
Score = 787 bits (2033), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/380 (100%), Positives = 380/380 (100%)
Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60
MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED
Sbjct: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60
Query: 61 IWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARL 120
IWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARL
Sbjct: 61 IWIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARL 120
Query: 121 HLSTHITHPDCTQISKINNQKPDLLVGADGLNSNIRHYIDTQPITFSGDVVLRCLIPQNN 180
HLSTHITHPDCTQISKINNQKPDLLVGADGLNSNIRHYIDTQPITFSGDVVLRCLIPQNN
Sbjct: 121 HLSTHITHPDCTQISKINNQKPDLLVGADGLNSNIRHYIDTQPITFSGDVVLRCLIPQNN 180
Query: 181 APEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKRSEIHKEWFVK 240
APEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKRSEIHKEWFVK
Sbjct: 181 APEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISFLKRSEIHKEWFVK 240
Query: 241 HLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAI 300
HLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAI
Sbjct: 241 HLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHTLLPFAAQGANMAI 300
Query: 301 EDAYALSYLLGKKTIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRPASLFRNAGLRL 360
EDAYALSYLLGKKTIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRPASLFRNAGLRL
Sbjct: 301 EDAYALSYLLGKKTIPAAISAYQKVRAVRVKRIRYRTKLNQLLFHMHRPASLFRNAGLRL 360
Query: 361 GIHKPLHKSLDWIYQYKIPE 380
GIHKPLHKSLDWIYQYKIPE
Sbjct: 361 GIHKPLHKSLDWIYQYKIPE 380
>gi|254780842|ref|YP_003065255.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 384
Score = 49.7 bits (117), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 83/376 (22%), Positives = 141/376 (37%), Gaps = 35/376 (9%)
Query: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60
+IIG+G++G A +G + ++ + L D + + LK I + D L+D
Sbjct: 7 IIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGID-FLKEINVWDFLQD 65
Query: 61 I--------WIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHI 112
I ++ D + + + S + N + H L + I
Sbjct: 66 IAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYN--------IPNHVLMESFAEKI 117
Query: 113 QTQPLAR----LHLSTHITHPDCTQISKINNQ-KPDLLVGADGLNSNIRHYIDTQPITFS 167
PL L I + T + Q L+G+DG NS++R + +S
Sbjct: 118 SQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSSVRRQMGYGENKWS 177
Query: 168 GDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISF 227
L Q++ P + + V F + PLRE N ++V++
Sbjct: 178 YPQKALVLNFQHSMPH--NGRCVE-FHKSLGTITQIPLRE-NFSSLVWIMESQEADFYYK 233
Query: 228 LKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHT 287
L +EI + L + +I I + D ++ L H KK VL+G+AAH
Sbjct: 234 LPVNEI-----ARRLEQYLYPVIGKIEVVTDVQIFQL-SGMISHCFGKKRVVLVGEAAHA 287
Query: 288 LLPFAAQGANMAIEDAYALSYLLGKK--TIPAAISAYQKV-RAVRVKRIRYRTKLNQLLF 344
L P QG N+++ D L L + + A + Y + R +KRI N+ LF
Sbjct: 288 LPPICGQGLNLSMRDVIILLNLFQSEHMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLF 347
Query: 345 HMHRPASLFRNAGLRL 360
+ + R L
Sbjct: 348 SRYPLLQILRAGTFHL 363
>gi|255764489|ref|YP_003065094.2| stationary phase survival protein SurE [Candidatus Liberibacter
asiaticus str. psy62]
Length = 250
Score = 26.6 bits (57), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 111 HIQTQPLARLHLSTHITHPDCTQIS--KINNQKPDLLVGADGLNSNIRHYI 159
+I + +++ + H T DC I+ K++++KPDL++ + +N +++
Sbjct: 51 NIACRTISKKRFAVHGTPVDCVVIALQKMSDKKPDLILSGVNVGTNTSNHV 101
>gi|254780217|ref|YP_003064630.1| DNA polymerase III subunit delta' [Candidatus Liberibacter
asiaticus str. psy62]
Length = 347
Score = 25.0 bits (53), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 290 PFAAQGANMAIEDAYALSYLLGKKTIPAAISAYQKVRAV-RVKRIRY 335
PF Q A+ A+ D LSY L KT ++ V V ++RIRY
Sbjct: 79 PFVKQMASHALHDFLYLSYSLNPKT-----GKWRTVITVDEIRRIRY 120
>gi|254781148|ref|YP_003065561.1| hypothetical protein CLIBASIA_05275 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 69
Score = 24.3 bits (51), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 21/51 (41%)
Query: 79 LSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHIQTQPLARLHLSTHITHP 129
LS FS K YSRNN Y + + LL QP+ + H P
Sbjct: 2 LSDFSKKYYSRNNNSIYYFIGLEQEILGSLLLKGNLQPIISFLDAQHFIDP 52
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.323 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 253,937
Number of Sequences: 1233
Number of extensions: 10715
Number of successful extensions: 36
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 10
length of query: 380
length of database: 328,796
effective HSP length: 75
effective length of query: 305
effective length of database: 236,321
effective search space: 72077905
effective search space used: 72077905
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 39 (19.6 bits)