Query gi|254780169|ref|YP_003064582.1| hypothetical protein CLIBASIA_00260 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 54
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Sun May 22 21:16:14 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780169.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2j63_A AP-endonuclease; base 24.8 41 0.0012 16.6 1.9 27 25-51 17-43 (126)
2 >2wyh_A Alpha-mannosidase; hyd 19.4 31 0.00091 17.3 0.3 38 14-51 16-56 (72)
3 >1pq3_A Arginase II, mitochond 16.9 96 0.0028 14.7 2.7 21 14-34 212-232 (306)
4 >3fvh_A Serine/threonine-prote 13.3 1.1E+02 0.0032 14.5 1.8 13 39-51 9-21 (136)
5 >1woh_A Agmatinase; alpha/beta 11.6 1.3E+02 0.0039 14.0 1.9 20 15-34 214-233 (305)
6 >1ev0_A MINE; topological spec 10.2 1.5E+02 0.0045 13.7 1.8 17 38-54 8-25 (58)
7 >2h7o_A Protein kinase YPKA; Y 10.0 65 0.0019 15.6 -0.2 35 10-53 49-83 (97)
8 >2nlv_A XISI protein-like; YP_ 9.6 1.6E+02 0.0048 13.5 2.7 18 35-52 5-22 (112)
9 >1yc5_A NAD-dependent deacetyl 9.6 1.1E+02 0.0034 14.3 1.0 14 25-38 94-107 (200)
10 >1q1a_A HST2 protein; ternary 9.5 99 0.0029 14.7 0.6 14 25-38 56-69 (189)
No 1
>>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} (A:135-232,A:440-467)
Probab=24.80 E-value=41 Score=16.61 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=18.4
Q ss_pred EEEEEEHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 377851547999999999999999997
Q gi|254780169|r 25 LFLSFNIDGLFEKYLEIIQQLLSVIAS 51 (54)
Q Consensus 25 lflsfnidglfekyleiiqqllsvias 51 (54)
-++|+||.|+....-.-.+.++..|..
T Consensus 17 kIlT~NV~gl~~~~k~~~~~l~~~i~~ 43 (126)
T 2j63_A 17 KFITWNVAGLRGLLKKNASALRAFMEA 43 (126)
T ss_dssp EEEEEECSCHHHHHHHCTTHHHHHHHH
T ss_pred EEEEEECCCHHHHHHCCHHHHHHHHHH
T ss_conf 999990156777643254899999985
No 2
>>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase; 1.90A {Streptococcus pyogenes} PDB: 2wyi_A* (A:41-112)
Probab=19.45 E-value=31 Score=17.27 Aligned_cols=38 Identities=26% Similarity=0.581 Sum_probs=26.8
Q ss_pred HHHHCCCCCCEEEEEEEHHH---HHHHHHHHHHHHHHHHHH
Q ss_conf 77740233470377851547---999999999999999997
Q gi|254780169|r 14 KKVFKGFKAQPLFLSFNIDG---LFEKYLEIIQQLLSVIAS 51 (54)
Q Consensus 14 kkvfkgfkaqplflsfnidg---lfekyleiiqqllsvias 51 (54)
..|..-+...|-|-+|..|| +.|.||++-.+-..-|..
T Consensus 16 ~~vl~~LE~~~~~~~F~LDGQt~ileDYL~~~Pe~~eri~k 56 (72)
T 2wyh_A 16 DDLLEVFQTDPDFHSFHLDGQTIILDDYLKVRPEREPEIRQ 56 (72)
T ss_dssp HHHHHHHHHCTTCCCEECTTBTHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHCCCCCEEEEECHHHHHHHHHHCCHHHHHHHHH
T ss_conf 99999998698862899901899999998659999999999
No 3
>>1pq3_A Arginase II, mitochondrial precursor; biosynthetic protein, hydrolase; HET: S2C; 2.70A {Homo sapiens} (A:)
Probab=16.86 E-value=96 Score=14.72 Aligned_cols=21 Identities=33% Similarity=0.684 Sum_probs=15.9
Q ss_pred HHHHCCCCCCEEEEEEEHHHH
Q ss_conf 777402334703778515479
Q gi|254780169|r 14 KKVFKGFKAQPLFLSFNIDGL 34 (54)
Q Consensus 14 kkvfkgfkaqplflsfnidgl 34 (54)
.+..+....+|+|+||.+|.+
T Consensus 212 ~~~~~~~~~~~vyisiDiDvl 232 (306)
T 1pq3_A 212 FDLLIGKRQRPIHLSFDIDAF 232 (306)
T ss_dssp HHHHHSSSCCCEEEEEEGGGB
T ss_pred HHHHHCCCCCCEEEEEECCCC
T ss_conf 999850468845999864653
No 4
>>3fvh_A Serine/threonine-protein kinase PLK1; POLO like kinas 1, POLO box domain, phosphopeptide binding domain, ATP-binding, cell cycle; HET: TPO; 1.58A {Homo sapiens} PDB: 1q4k_B* 2ogq_A 2ojs_A* 2ojx_A 3bzi_A* 3hik_A* 1q4o_A* 1umw_A* 3hih_A 3c5l_A* (A:1-33,A:135-237)
Probab=13.29 E-value=1.1e+02 Score=14.47 Aligned_cols=13 Identities=54% Similarity=0.534 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999997
Q gi|254780169|r 39 LEIIQQLLSVIAS 51 (54)
Q Consensus 39 leiiqqllsvias 51 (54)
-+..|||.+|.||
T Consensus 9 sdmLQQL~~vnas 21 (136)
T 3fvh_A 9 SDMLQQLHSVNAS 21 (136)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999997622468
No 5
>>1woh_A Agmatinase; alpha/beta fold, hydrolase; 1.75A {Deinococcus radiodurans} (A:)
Probab=11.64 E-value=1.3e+02 Score=14.02 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=15.8
Q ss_pred HHHCCCCCCEEEEEEEHHHH
Q ss_conf 77402334703778515479
Q gi|254780169|r 15 KVFKGFKAQPLFLSFNIDGL 34 (54)
Q Consensus 15 kvfkgfkaqplflsfnidgl 34 (54)
++.+-.+..|.|+||.+|.|
T Consensus 214 ~~~~~~~~~~vyisiDiDvl 233 (305)
T 1woh_A 214 VLAQLPRGQNVYFSVDVDGF 233 (305)
T ss_dssp HHTTSCCSSEEEEEEEGGGB
T ss_pred HHHHCCCCCEEEEEEEECEE
T ss_conf 88612368807999850205
No 6
>>1ev0_A MINE; topological specificity, cell division, mincd, minicell, cell cycle; NMR {Escherichia coli} (A:)
Probab=10.24 E-value=1.5e+02 Score=13.70 Aligned_cols=17 Identities=41% Similarity=0.833 Sum_probs=11.4
Q ss_pred HHHHH-HHHHHHHHHHCC
Q ss_conf 99999-999999997509
Q gi|254780169|r 38 YLEII-QQLLSVIASYVE 54 (54)
Q Consensus 38 yleii-qqllsviasyve 54 (54)
||... +.+|.||+-||.
T Consensus 8 yLp~L~~Eil~VI~KyV~ 25 (58)
T 1ev0_A 8 YLPQLRKDILEVICKYVQ 25 (58)
T ss_dssp SHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHEE
T ss_conf 699999999999987588
No 7
>>2h7o_A Protein kinase YPKA; YOPO, GDI, signaling protein; 2.00A {Yersinia pseudotuberculosis} PDB: 2h7v_C* (A:1-97)
Probab=10.03 E-value=65 Score=15.60 Aligned_cols=35 Identities=29% Similarity=0.311 Sum_probs=24.2
Q ss_pred HHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 76027774023347037785154799999999999999999750
Q gi|254780169|r 10 FVENKKVFKGFKAQPLFLSFNIDGLFEKYLEIIQQLLSVIASYV 53 (54)
Q Consensus 10 fvenkkvfkgfkaqplflsfnidglfekyleiiqqllsviasyv 53 (54)
-+-||.--.||-.|.-|+|||- .|-.--.||++||
T Consensus 49 ~~LdKAErqg~~d~dq~kSfnS---------LilKty~Vi~dYV 83 (97)
T 2h7o_A 49 VALDKAEREGGVDKDQLKSFNS---------LILKTYRVIEDYV 83 (97)
T ss_dssp HHHHHHHHC--CCHHHHHHHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHH---------HHHHHHHHHHHHH
T ss_conf 9988998705740657876999---------9998647899997
No 8
>>2nlv_A XISI protein-like; YP_324325.1, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics; HET: MSE; 1.30A {Anabaena variabilis atcc 29413} (A:)
Probab=9.63 E-value=1.6e+02 Score=13.53 Aligned_cols=18 Identities=39% Similarity=0.563 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999975
Q gi|254780169|r 35 FEKYLEIIQQLLSVIASY 52 (54)
Q Consensus 35 fekyleiiqqllsviasy 52 (54)
.++|-.|||++|+--|.+
T Consensus 5 l~~Yr~iI~~iL~~ya~~ 22 (112)
T 2nlv_A 5 LVKYQELVKKLLTNYASD 22 (112)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCC
T ss_conf 889999999999998627
No 9
>>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} (A:1-117,A:164-246)
Probab=9.61 E-value=1.1e+02 Score=14.33 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=11.1
Q ss_pred EEEEEEHHHHHHHH
Q ss_conf 37785154799999
Q gi|254780169|r 25 LFLSFNIDGLFEKY 38 (54)
Q Consensus 25 lflsfnidglfeky 38 (54)
..+.-|+|+||++.
T Consensus 94 ~iiTqNiD~l~~~a 107 (200)
T 1yc5_A 94 AVITQNIDRLHQRA 107 (200)
T ss_dssp EEEECCCSCHHHHT
T ss_pred EEEECCHHHHHHHC
T ss_conf 37621535789863
No 10
>>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} (A:1-34,A:86-134,A:184-289)
Probab=9.52 E-value=99 Score=14.65 Aligned_cols=14 Identities=29% Similarity=0.192 Sum_probs=10.5
Q ss_pred EEEEEEHHHHHHHH
Q ss_conf 37785154799999
Q gi|254780169|r 25 LFLSFNIDGLFEKY 38 (54)
Q Consensus 25 lflsfnidglfeky 38 (54)
..++-|||||+++-
T Consensus 56 ~viTQNVDgLh~kA 69 (189)
T 1q1a_A 56 RVYTQNIDTLERQA 69 (189)
T ss_dssp EEEECCSSCHHHHT
T ss_pred EEEEECCCCHHHHC
T ss_conf 89963320468775
Done!