BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780169|ref|YP_003064582.1| hypothetical protein CLIBASIA_00260 [Candidatus Liberibacter asiaticus str. psy62] (54 letters) Database: nr 13,984,884 sequences; 4,792,584,752 total letters Searching..................................................done Results from round 1 >gi|254780169|ref|YP_003064582.1| hypothetical protein CLIBASIA_00260 [Candidatus Liberibacter asiaticus str. psy62] gi|254039846|gb|ACT56642.1| hypothetical protein CLIBASIA_00260 [Candidatus Liberibacter asiaticus str. psy62] Length = 54 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 54/54 (100%), Positives = 54/54 (100%) Query: 1 MCTPLMKKIFVENKKVFKGFKAQPLFLSFNIDGLFEKYLEIIQQLLSVIASYVE 54 MCTPLMKKIFVENKKVFKGFKAQPLFLSFNIDGLFEKYLEIIQQLLSVIASYVE Sbjct: 1 MCTPLMKKIFVENKKVFKGFKAQPLFLSFNIDGLFEKYLEIIQQLLSVIASYVE 54 Searching..................................................done Results from round 2 CONVERGED! >gi|254780169|ref|YP_003064582.1| hypothetical protein CLIBASIA_00260 [Candidatus Liberibacter asiaticus str. psy62] gi|254039846|gb|ACT56642.1| hypothetical protein CLIBASIA_00260 [Candidatus Liberibacter asiaticus str. psy62] Length = 54 Score = 91.6 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 54/54 (100%), Positives = 54/54 (100%) Query: 1 MCTPLMKKIFVENKKVFKGFKAQPLFLSFNIDGLFEKYLEIIQQLLSVIASYVE 54 MCTPLMKKIFVENKKVFKGFKAQPLFLSFNIDGLFEKYLEIIQQLLSVIASYVE Sbjct: 1 MCTPLMKKIFVENKKVFKGFKAQPLFLSFNIDGLFEKYLEIIQQLLSVIASYVE 54 Database: nr Posted date: May 13, 2011 4:10 AM Number of letters in database: 999,999,932 Number of sequences in database: 2,987,209 Database: /data/usr2/db/fasta/nr.01 Posted date: May 13, 2011 4:17 AM Number of letters in database: 999,998,956 Number of sequences in database: 2,896,973 Database: /data/usr2/db/fasta/nr.02 Posted date: May 13, 2011 4:23 AM Number of letters in database: 999,999,979 Number of sequences in database: 2,907,862 Database: /data/usr2/db/fasta/nr.03 Posted date: May 13, 2011 4:29 AM Number of letters in database: 999,999,513 Number of sequences in database: 2,932,190 Database: /data/usr2/db/fasta/nr.04 Posted date: May 13, 2011 4:33 AM Number of letters in database: 792,586,372 Number of sequences in database: 2,260,650 Lambda K H 0.328 0.144 0.409 Lambda K H 0.267 0.0466 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,069,139,939 Number of Sequences: 13984884 Number of extensions: 34419972 Number of successful extensions: 93866 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 93863 Number of HSP's gapped (non-prelim): 3 length of query: 54 length of database: 4,792,584,752 effective HSP length: 27 effective length of query: 27 effective length of database: 4,414,992,884 effective search space: 119204807868 effective search space used: 119204807868 T: 11 A: 40 X1: 16 ( 7.6 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 76 (33.7 bits)