RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780169|ref|YP_003064582.1| hypothetical protein
CLIBASIA_00260 [Candidatus Liberibacter asiaticus str. psy62]
         (54 letters)



>d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase
           {Haemophilus influenzae [TaxId: 727]}
          Length = 357

 Score = 24.7 bits (53), Expect = 2.0
 Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 4/49 (8%)

Query: 10  FVENKKVFKGFKAQPLFLSFNIDGLF--EKYLEIIQQLLSVI--ASYVE 54
           +   K+     KA+   +S   D LF      +  Q L        + E
Sbjct: 281 YENVKEALSRIKARYTLVSVTTDQLFKPIDLYKSKQLLEQSGVDLHFYE 329


>d2vata1 c.69.1.40 (A:7-382) Acetyl-CoA:deacetylcephalosporin C
           acetyltransferase CefG {Acremonium chrysogenum [TaxId:
           5044]}
          Length = 376

 Score = 24.0 bits (51), Expect = 3.9
 Identities = 5/43 (11%), Positives = 17/43 (39%), Gaps = 4/43 (9%)

Query: 14  KKVFKGFKAQPLFLSFNIDGLF--EKYLEIIQQLLSVIASYVE 54
            +         L +    DGL+  ++++E+ + + +  +    
Sbjct: 309 PEALAMITQPALIICARSDGLYSFDEHVEMGRSIPN--SRLCV 349


>d2pl5a1 c.69.1.40 (A:5-366) Homoserine O-acetyltransferase
           {Leptospira interrogans [TaxId: 173]}
          Length = 362

 Score = 23.2 bits (49), Expect = 6.7
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 4/45 (8%)

Query: 14  KKVFKGFKAQPLFLSFNIDGLF--EKYLEIIQQLLS--VIASYVE 54
                    + L +S++ D L+   +  EI++ L +      YVE
Sbjct: 289 TAALSNATCRFLVVSYSSDWLYPPAQSREIVKSLEAADKRVFYVE 333


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.144    0.409 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 195,915
Number of extensions: 6569
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 5
Length of query: 54
Length of database: 2,407,596
Length adjustment: 25
Effective length of query: 29
Effective length of database: 2,064,346
Effective search space: 59866034
Effective search space used: 59866034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.4 bits)