BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780169|ref|YP_003064582.1| hypothetical protein
CLIBASIA_00260 [Candidatus Liberibacter asiaticus str. psy62]
         (54 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780169|ref|YP_003064582.1| hypothetical protein CLIBASIA_00260 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 54

 Score =  108 bits (270), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/54 (100%), Positives = 54/54 (100%)

Query: 1  MCTPLMKKIFVENKKVFKGFKAQPLFLSFNIDGLFEKYLEIIQQLLSVIASYVE 54
          MCTPLMKKIFVENKKVFKGFKAQPLFLSFNIDGLFEKYLEIIQQLLSVIASYVE
Sbjct: 1  MCTPLMKKIFVENKKVFKGFKAQPLFLSFNIDGLFEKYLEIIQQLLSVIASYVE 54


>gi|254781165|ref|YP_003065578.1| pyridoxamine 5'-phosphate oxidase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 201

 Score = 20.8 bits (42), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 3   TPLMKKIFVENKKVFKGFKAQPLFLSFNIDGLFEKYLEI 41
           +P  K+I +EN K    F  + L     + GL EKY ++
Sbjct: 68  SPKGKEI-LENPKASLCFHWKSLARQLRVRGLVEKYCDL 105


>gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 789

 Score = 20.4 bits (41), Expect = 5.8,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 12  ENKKVFKGFKAQPLFLSFN 30
           ++K++ KG K +P F S +
Sbjct: 761 KSKRIIKGLKLKPAFESVD 779


>gi|254780755|ref|YP_003065168.1| octaprenyl-diphosphate synthase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 322

 Score = 20.0 bits (40), Expect = 7.3,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 25  LFLSFNIDGLFEKYLEIIQQLLSVIAS 51
           L LS N+D   E YL +I+   +V+ S
Sbjct: 148 LSLSKNLDVTEEDYLHVIKSKTAVLFS 174


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.328    0.144    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,797
Number of Sequences: 1233
Number of extensions: 959
Number of successful extensions: 4
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 54
length of database: 328,796
effective HSP length: 26
effective length of query: 28
effective length of database: 296,738
effective search space:  8308664
effective search space used:  8308664
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 31 (16.5 bits)