HHsearch alignment for GI: 254780170 and conserved domain: PRK09501
>PRK09501 potD spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed.
Probab=96.95 E-value=0.037 Score=33.97 Aligned_cols=240 Identities=13% Similarity=0.085 Sum_probs=120.9
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 91389999999999998401244216899985794999871789883068898988015099999999996798220259
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQY 80 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~ 80 (342)
T Consensus 1 ~~~-~~~~ll~~~a~~l~~~~~~a~------~~~~L~i~~W~~Yi--------------~~~~i~~Fe~etG---ikV~~ 56 (348)
T PRK09501 1 MKK-WSRHLLAAGALALGMSAAHAD------DNNTLYFYNWTEYV--------------PPGLLEQFTKETG---IKVIY 56 (348)
T ss_pred CHH-HHHHHHHHHHHHHHCCHHHHC------CCCEEEEECCCCCC--------------CHHHHHHHHHHHC---CEEEE
T ss_conf 936-899999999999735033543------38979998710018--------------9789999999989---88999
Q ss_pred EECCCCC-CHHHHHC---CCEEEEEECCCCCCCC------------HH----------------CCCCCCCCCCCCCCEE
Q ss_conf 9814310-0267743---9627998124325320------------11----------------0278435322344023
Q gi|254780170|r 81 LPLNAKE-RFLALQS---KQIDILSRNTDWTLLR------------EI----------------SLGLAFRPITYFDGQG 128 (342)
Q Consensus 81 v~~~~~~-rf~aL~s---G~vDil~~~~T~T~~R------------d~----------------~~~v~Fs~~~~~dgq~ 128 (342)
T Consensus 57 ~~~~s~ee~~akL~a~~~~~yDvv~ps~~~v-~~l~~~gll~~LD~s~ipN~~nl~p~~~~~~~dp~~~y~vPy~wGt~G 135 (348)
T PRK09501 57 STYESNETMYAKLKTYKDGAYDLVVPSTYYV-DKMRKEGMIQKIDKSKLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATA 135 (348)
T ss_pred EECCCHHHHHHHHHCCCCCCCEEEEECHHHH-HHHHHCCCCCCCCHHHCCCHHHCCHHHHCCCCCCCCCEEEEEEEECCE
T ss_conf 9549999999999717999828999796899-999977984547842284812269767447748998489889975115
Q ss_pred EEEECC----CCCCCHHHHC-----CCCEEEE-----------------ECCCHHHHHH---HHHHHCCCCCCEEEECCH
Q ss_conf 463021----1347536417-----8620343-----------------1342699999---999862998507874798
Q gi|254780170|r 129 FIMHKK----KGISSVSQLS-----GASICVQ-----------------AGTTTELTLA---DYFKAHNMKYHPIVFERV 179 (342)
Q Consensus 129 ~lVrk~----~~i~s~~dL~-----G~~I~v~-----------------~GTT~e~~l~---~~~~~~~~~~~~v~~~~~ 179 (342)
T Consensus 136 i~yn~d~v~~~~~~SW~dL~dp~~kGk-i~~~d~~~~~~~~al~~lG~~~n~~d~~~l~~a~~~L~~~~~--~i~~~~s- 211 (348)
T PRK09501 136 IGVNGDAVDPKSVTSWADLWKPEYKGS-LLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMP--NVAAFNS- 211 (348)
T ss_pred EEEEECCCCCCCCCCHHHHCCHHHCCE-EEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC--CEEEEEC-
T ss_conf 998501147888887898549664790-797166789999999982799888999999999999998511--0589817-
Q ss_pred HHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHH---HHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999873960299825047999998367800100256444237101000277757---99998877443311212330
Q gi|254780170|r 180 EEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTE---WYNIVSWTHYAMVTAEELGI 256 (342)
Q Consensus 180 ~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~---w~d~V~W~~~ali~Aee~gi 256 (342)
T Consensus 212 d~~~~~l~~Gev~ia~~wsgda~~~~-~~~~~i~~v~PkEG~~~w~D~~~Ipk~A~n~e~A~~FInf~l~Pevaa~---- 286 (348)
T PRK09501 212 DNPANPYMEGEVNLGMIWNGSAFVAR-QAGTPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLLRPDVAKQ---- 286 (348)
T ss_pred CCHHHHHHCCCCEEEEEECHHHHHHH-HCCCCCCEEECCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHH----
T ss_conf 70546987388329987405899999-7089971897578866998998898999898999999998619799999----
Q ss_pred CHHHHHHHHHCCCCHHHHHHH
Q ss_conf 152089886226717788762
Q gi|254780170|r 257 TQKNINQVSKDTTNPDVQRFL 277 (342)
Q Consensus 257 t~~nv~~~~~~s~~p~i~r~l 277 (342)
T Consensus 287 ---~a~~~~y~t~n~~A~~~l 304 (348)
T PRK09501 287 ---VAETIGYPTPNLAARKLL 304 (348)
T ss_pred ---HHHHHCCCCHHHHHHHHC
T ss_conf ---999748898308888618