HHsearch alignment for GI: 254780170 and conserved domain: PRK09501

>PRK09501 potD spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed.
Probab=96.95  E-value=0.037  Score=33.97  Aligned_cols=240  Identities=13%  Similarity=0.085  Sum_probs=120.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             91389999999999998401244216899985794999871789883068898988015099999999996798220259
Q gi|254780170|r    1 MYKDFFVSILCLIILFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQY   80 (342)
Q Consensus         1 M~K~~l~~~l~l~~~~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~   80 (342)
T Consensus         1 ~~~-~~~~ll~~~a~~l~~~~~~a~------~~~~L~i~~W~~Yi--------------~~~~i~~Fe~etG---ikV~~   56 (348)
T PRK09501          1 MKK-WSRHLLAAGALALGMSAAHAD------DNNTLYFYNWTEYV--------------PPGLLEQFTKETG---IKVIY   56 (348)
T ss_pred             CHH-HHHHHHHHHHHHHHCCHHHHC------CCCEEEEECCCCCC--------------CHHHHHHHHHHHC---CEEEE
T ss_conf             936-899999999999735033543------38979998710018--------------9789999999989---88999


Q ss_pred             EECCCCC-CHHHHHC---CCEEEEEECCCCCCCC------------HH----------------CCCCCCCCCCCCCCEE
Q ss_conf             9814310-0267743---9627998124325320------------11----------------0278435322344023
Q gi|254780170|r   81 LPLNAKE-RFLALQS---KQIDILSRNTDWTLLR------------EI----------------SLGLAFRPITYFDGQG  128 (342)
Q Consensus        81 v~~~~~~-rf~aL~s---G~vDil~~~~T~T~~R------------d~----------------~~~v~Fs~~~~~dgq~  128 (342)
T Consensus        57 ~~~~s~ee~~akL~a~~~~~yDvv~ps~~~v-~~l~~~gll~~LD~s~ipN~~nl~p~~~~~~~dp~~~y~vPy~wGt~G  135 (348)
T PRK09501         57 STYESNETMYAKLKTYKDGAYDLVVPSTYYV-DKMRKEGMIQKIDKSKLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATA  135 (348)
T ss_pred             EECCCHHHHHHHHHCCCCCCCEEEEECHHHH-HHHHHCCCCCCCCHHHCCCHHHCCHHHHCCCCCCCCCEEEEEEEECCE
T ss_conf             9549999999999717999828999796899-999977984547842284812269767447748998489889975115


Q ss_pred             EEEECC----CCCCCHHHHC-----CCCEEEE-----------------ECCCHHHHHH---HHHHHCCCCCCEEEECCH
Q ss_conf             463021----1347536417-----8620343-----------------1342699999---999862998507874798
Q gi|254780170|r  129 FIMHKK----KGISSVSQLS-----GASICVQ-----------------AGTTTELTLA---DYFKAHNMKYHPIVFERV  179 (342)
Q Consensus       129 ~lVrk~----~~i~s~~dL~-----G~~I~v~-----------------~GTT~e~~l~---~~~~~~~~~~~~v~~~~~  179 (342)
T Consensus       136 i~yn~d~v~~~~~~SW~dL~dp~~kGk-i~~~d~~~~~~~~al~~lG~~~n~~d~~~l~~a~~~L~~~~~--~i~~~~s-  211 (348)
T PRK09501        136 IGVNGDAVDPKSVTSWADLWKPEYKGS-LLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMP--NVAAFNS-  211 (348)
T ss_pred             EEEEECCCCCCCCCCHHHHCCHHHCCE-EEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC--CEEEEEC-
T ss_conf             998501147888887898549664790-797166789999999982799888999999999999998511--0589817-


Q ss_pred             HHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHH---HHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999873960299825047999998367800100256444237101000277757---99998877443311212330
Q gi|254780170|r  180 EEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTE---WYNIVSWTHYAMVTAEELGI  256 (342)
Q Consensus       180 ~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~---w~d~V~W~~~ali~Aee~gi  256 (342)
T Consensus       212 d~~~~~l~~Gev~ia~~wsgda~~~~-~~~~~i~~v~PkEG~~~w~D~~~Ipk~A~n~e~A~~FInf~l~Pevaa~----  286 (348)
T PRK09501        212 DNPANPYMEGEVNLGMIWNGSAFVAR-QAGTPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLLRPDVAKQ----  286 (348)
T ss_pred             CCHHHHHHCCCCEEEEEECHHHHHHH-HCCCCCCEEECCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHH----
T ss_conf             70546987388329987405899999-7089971897578866998998898999898999999998619799999----


Q ss_pred             CHHHHHHHHHCCCCHHHHHHH
Q ss_conf             152089886226717788762
Q gi|254780170|r  257 TQKNINQVSKDTTNPDVQRFL  277 (342)
Q Consensus       257 t~~nv~~~~~~s~~p~i~r~l  277 (342)
T Consensus       287 ---~a~~~~y~t~n~~A~~~l  304 (348)
T PRK09501        287 ---VAETIGYPTPNLAARKLL  304 (348)
T ss_pred             ---HHHHHCCCCHHHHHHHHC
T ss_conf             ---999748898308888618