HHsearch alignment for GI: 254780170 and conserved domain: PRK09791
>PRK09791 putative DNA-binding transcriptional regulator; Provisional.
Probab=95.10 E-value=0.3 Score=28.23 Aligned_cols=182 Identities=10% Similarity=0.039 Sum_probs=110.1
Q ss_pred HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH
Q ss_conf 57949998717898830688989880150999999999967982202599814310026774396279981243253201
Q gi|254780170|r 32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE 111 (342)
Q Consensus 32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd 111 (342)
T Consensus 93 ~~G~l~Ig~~~~~~~-----------~~lp~~l~~f~~~~--P~v~i~i~~~~~~~~~~~l~~g~~D~~i~~~~-~~~~~ 158 (302)
T PRK09791 93 LAGQINIGMGASISR-----------SLMPAVISRFHQQH--PQVKVRIMEGQLVSMINELRQGELDFTINTYY-QGPYD 158 (302)
T ss_pred CCCEEEEEECHHHHH-----------HHHHHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHCCCCCEEEECCC-CCCCC
T ss_conf 663399986268898-----------71199999999988--79779999899999999998799778996567-88788
Q ss_pred HCCCCCCCCCCCCCCEEEEEECCC---CCCCHHHHCCCCE-EEEECCCHHHHHHHHHHHCCCCCCE-EEECCHHHHHHHH
Q ss_conf 102784353223440234630211---3475364178620-3431342699999999862998507-8747989999998
Q gi|254780170|r 112 ISLGLAFRPITYFDGQGFIMHKKK---GISSVSQLSGASI-CVQAGTTTELTLADYFKAHNMKYHP-IVFERVEEIDAAY 186 (342)
Q Consensus 112 ~~~~v~Fs~~~~~dgq~~lVrk~~---~i~s~~dL~G~~I-~v~~GTT~e~~l~~~~~~~~~~~~~-v~~~~~~~a~~al 186 (342)
T Consensus 159 ~--~l~~~-~l~~~~~~~v~~~~hpl~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~lv 235 (302)
T PRK09791 159 H--EFTFE-KLLEKQFAIFCRPGHPAIGARSIKQLLDYSWTMPTPHGSYYKQLSELLDDQAQTPQVGVVCETFSACISLV 235 (302)
T ss_pred C--CEEEE-EEEEEEEEEEECCCCCCCCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHH
T ss_conf 7--64799-97740159998389843579899998479938757999799999999996799985699999299999999
Q ss_pred HCCCEEEEEECCHHHHHHHHHCCCCHHHCCC--CCCCCCCCEEEECCCCCH
Q ss_conf 7396029982504799999836780010025--644423710100027775
Q gi|254780170|r 187 RAHRCDAYTGDISALYALKLTNDRPSEHVIL--PDIISKSPLAPAIIQGDT 235 (342)
Q Consensus 187 ~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il--~e~iskEPlg~avr~gD~ 235 (342)
T Consensus 236 ~~g~gv~ilp~~~--~~~~~---~~~~lv~lpl~~~~~~~~~~lv~r~~~~ 281 (302)
T PRK09791 236 AKSDFLSILPEEM--GCDPL---HGQGLVMLPVSEILPKAAYYLIQRRDSR 281 (302)
T ss_pred HHCCEEEEECHHH--HHHHH---HCCCEEEEECCCCCCCEEEEEEEECCCC
T ss_conf 9789679631999--98787---4899999979998860089999989098