HHsearch alignment for GI: 254780170 and conserved domain: PRK09791

>PRK09791 putative DNA-binding transcriptional regulator; Provisional.
Probab=95.10  E-value=0.3  Score=28.23  Aligned_cols=182  Identities=10%  Similarity=0.039  Sum_probs=110.1

Q ss_pred             HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH
Q ss_conf             57949998717898830688989880150999999999967982202599814310026774396279981243253201
Q gi|254780170|r   32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE  111 (342)
Q Consensus        32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd  111 (342)
T Consensus        93 ~~G~l~Ig~~~~~~~-----------~~lp~~l~~f~~~~--P~v~i~i~~~~~~~~~~~l~~g~~D~~i~~~~-~~~~~  158 (302)
T PRK09791         93 LAGQINIGMGASISR-----------SLMPAVISRFHQQH--PQVKVRIMEGQLVSMINELRQGELDFTINTYY-QGPYD  158 (302)
T ss_pred             CCCEEEEEECHHHHH-----------HHHHHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHCCCCCEEEECCC-CCCCC
T ss_conf             663399986268898-----------71199999999988--79779999899999999998799778996567-88788


Q ss_pred             HCCCCCCCCCCCCCCEEEEEECCC---CCCCHHHHCCCCE-EEEECCCHHHHHHHHHHHCCCCCCE-EEECCHHHHHHHH
Q ss_conf             102784353223440234630211---3475364178620-3431342699999999862998507-8747989999998
Q gi|254780170|r  112 ISLGLAFRPITYFDGQGFIMHKKK---GISSVSQLSGASI-CVQAGTTTELTLADYFKAHNMKYHP-IVFERVEEIDAAY  186 (342)
Q Consensus       112 ~~~~v~Fs~~~~~dgq~~lVrk~~---~i~s~~dL~G~~I-~v~~GTT~e~~l~~~~~~~~~~~~~-v~~~~~~~a~~al  186 (342)
T Consensus       159 ~--~l~~~-~l~~~~~~~v~~~~hpl~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~lv  235 (302)
T PRK09791        159 H--EFTFE-KLLEKQFAIFCRPGHPAIGARSIKQLLDYSWTMPTPHGSYYKQLSELLDDQAQTPQVGVVCETFSACISLV  235 (302)
T ss_pred             C--CEEEE-EEEEEEEEEEECCCCCCCCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHH
T ss_conf             7--64799-97740159998389843579899998479938757999799999999996799985699999299999999


Q ss_pred             HCCCEEEEEECCHHHHHHHHHCCCCHHHCCC--CCCCCCCCEEEECCCCCH
Q ss_conf             7396029982504799999836780010025--644423710100027775
Q gi|254780170|r  187 RAHRCDAYTGDISALYALKLTNDRPSEHVIL--PDIISKSPLAPAIIQGDT  235 (342)
Q Consensus       187 ~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il--~e~iskEPlg~avr~gD~  235 (342)
T Consensus       236 ~~g~gv~ilp~~~--~~~~~---~~~~lv~lpl~~~~~~~~~~lv~r~~~~  281 (302)
T PRK09791        236 AKSDFLSILPEEM--GCDPL---HGQGLVMLPVSEILPKAAYYLIQRRDSR  281 (302)
T ss_pred             HHCCEEEEECHHH--HHHHH---HCCCEEEEECCCCCCCEEEEEEEECCCC
T ss_conf             9789679631999--98787---4899999979998860089999989098