HHsearch alignment for GI: 254780170 and conserved domain: PRK09861

>PRK09861 cytoplasmic membrane lipoprotein-28; Provisional.
Probab=97.39  E-value=0.013  Score=36.82  Aligned_cols=194  Identities=12%  Similarity=0.125  Sum_probs=100.7

Q ss_pred             HHHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEC-CCCCCHHHH
Q ss_conf             9998401244216899985794999871789883068898988015099999999996798220259981-431002677
Q gi|254780170|r   14 ILFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPL-NAKERFLAL   92 (342)
Q Consensus        14 ~~~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~-~~~~rf~aL   92 (342)
T Consensus        18 ~~~l~~C~~~~~------~~k~ikVG~~~~p~--------~~----i~e~~~~~~~ek--~G~~leiv~FsDy~~PN~AL   77 (272)
T PRK09861         18 GILLAGCDQSSS------DAKHIKVGVINGAE--------QD----VAEVAKKVAKEK--YGLDVELVGFSGSLLPNDAT   77 (272)
T ss_pred             HHHHHHCCCCCC------CCCEEEEEECCCCH--------HH----HHHHHHHHHHHH--CCCEEEEEEECCCCCHHHHH
T ss_conf             999874589767------89738999678986--------99----999999888761--79768999946862262897


Q ss_pred             HCCCEEEEEECCCCCCCC-HHCCCCCCC--CCCCCCCEEEEEECCCCCCCHHHH-CCCCEEEEECCCHHHHHHHHHHHCC
Q ss_conf             439627998124325320-110278435--322344023463021134753641-7862034313426999999998629
Q gi|254780170|r   93 QSKQIDILSRNTDWTLLR-EISLGLAFR--PITYFDGQGFIMHKKKGISSVSQL-SGASICVQAGTTTELTLADYFKAHN  168 (342)
Q Consensus        93 ~sG~vDil~~~~T~T~~R-d~~~~v~Fs--~~~~~dgq~~lVrk~~~i~s~~dL-~G~~I~v~~GTT~e~~l~~~~~~~~  168 (342)
T Consensus        78 ~~G~iDaN~fQH~pyL~~~n~~~g~~L~~v~~~~~~P~glY---S~K~ksl~dlp~Ga~IaIPnDpsN~~RAL~lL~~aG  154 (272)
T PRK09861         78 NHGELDANVFQHRPFLEQDNQAHGYKLVAVGNTFVFPMAGY---SKKIKTVAQIKEGATVAIPNDPTNLGRALLLLQKEK  154 (272)
T ss_pred             HCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEC---CCCCCCHHHCCCCCEEEECCCHHHHHHHHHHHHHCC
T ss_conf             67983602455799999999986995799731678301403---446598758479998980478126999999999889


Q ss_pred             C---------------------CCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEE
Q ss_conf             9---------------------8507874798999999873960299825047999998367800100256444237101
Q gi|254780170|r  169 M---------------------KYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLA  227 (342)
Q Consensus       169 ~---------------------~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg  227 (342)
T Consensus       155 LI~Lk~~~~~~~t~~DI~~NPk~lk~~e~~-aaql~rsl~Dp~vD~avin~n--~a~~agl~p~~dal~~E~--~~~py~  229 (272)
T PRK09861        155 LITLKEGKGLLPTALDITDNPRHLQIMELE-GAQLPRVLDDPKVDVAIISTT--YIQQTGLSPVHDSVFIED--KNSPYV  229 (272)
T ss_pred             CEEECCCCCCCCCHHHHHCCCCCCEEEECC-HHHHHHHHCCCCCCEEEECHH--HHHHCCCCCCCCCEEECC--CCCCEE
T ss_conf             789779999777744576088776799826-777467505776168997605--798877794400203668--999837


Q ss_pred             --EECCCCCH
Q ss_conf             --00027775
Q gi|254780170|r  228 --PAIIQGDT  235 (342)
Q Consensus       228 --~avr~gD~  235 (342)
T Consensus       230 niiavr~~~~  239 (272)
T PRK09861        230 NILVAREDNK  239 (272)
T ss_pred             EEEEECCCCC
T ss_conf             9999827676