HHsearch alignment for GI: 254780170 and conserved domain: PRK09861
>PRK09861 cytoplasmic membrane lipoprotein-28; Provisional.
Probab=97.39 E-value=0.013 Score=36.82 Aligned_cols=194 Identities=12% Similarity=0.125 Sum_probs=100.7
Q ss_pred HHHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEC-CCCCCHHHH
Q ss_conf 9998401244216899985794999871789883068898988015099999999996798220259981-431002677
Q gi|254780170|r 14 ILFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPL-NAKERFLAL 92 (342)
Q Consensus 14 ~~~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~-~~~~rf~aL 92 (342)
T Consensus 18 ~~~l~~C~~~~~------~~k~ikVG~~~~p~--------~~----i~e~~~~~~~ek--~G~~leiv~FsDy~~PN~AL 77 (272)
T PRK09861 18 GILLAGCDQSSS------DAKHIKVGVINGAE--------QD----VAEVAKKVAKEK--YGLDVELVGFSGSLLPNDAT 77 (272)
T ss_pred HHHHHHCCCCCC------CCCEEEEEECCCCH--------HH----HHHHHHHHHHHH--CCCEEEEEEECCCCCHHHHH
T ss_conf 999874589767------89738999678986--------99----999999888761--79768999946862262897
Q ss_pred HCCCEEEEEECCCCCCCC-HHCCCCCCC--CCCCCCCEEEEEECCCCCCCHHHH-CCCCEEEEECCCHHHHHHHHHHHCC
Q ss_conf 439627998124325320-110278435--322344023463021134753641-7862034313426999999998629
Q gi|254780170|r 93 QSKQIDILSRNTDWTLLR-EISLGLAFR--PITYFDGQGFIMHKKKGISSVSQL-SGASICVQAGTTTELTLADYFKAHN 168 (342)
Q Consensus 93 ~sG~vDil~~~~T~T~~R-d~~~~v~Fs--~~~~~dgq~~lVrk~~~i~s~~dL-~G~~I~v~~GTT~e~~l~~~~~~~~ 168 (342)
T Consensus 78 ~~G~iDaN~fQH~pyL~~~n~~~g~~L~~v~~~~~~P~glY---S~K~ksl~dlp~Ga~IaIPnDpsN~~RAL~lL~~aG 154 (272)
T PRK09861 78 NHGELDANVFQHRPFLEQDNQAHGYKLVAVGNTFVFPMAGY---SKKIKTVAQIKEGATVAIPNDPTNLGRALLLLQKEK 154 (272)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEC---CCCCCCHHHCCCCCEEEECCCHHHHHHHHHHHHHCC
T ss_conf 67983602455799999999986995799731678301403---446598758479998980478126999999999889
Q ss_pred C---------------------CCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEE
Q ss_conf 9---------------------8507874798999999873960299825047999998367800100256444237101
Q gi|254780170|r 169 M---------------------KYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLA 227 (342)
Q Consensus 169 ~---------------------~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg 227 (342)
T Consensus 155 LI~Lk~~~~~~~t~~DI~~NPk~lk~~e~~-aaql~rsl~Dp~vD~avin~n--~a~~agl~p~~dal~~E~--~~~py~ 229 (272)
T PRK09861 155 LITLKEGKGLLPTALDITDNPRHLQIMELE-GAQLPRVLDDPKVDVAIISTT--YIQQTGLSPVHDSVFIED--KNSPYV 229 (272)
T ss_pred CEEECCCCCCCCCHHHHHCCCCCCEEEECC-HHHHHHHHCCCCCCEEEECHH--HHHHCCCCCCCCCEEECC--CCCCEE
T ss_conf 789779999777744576088776799826-777467505776168997605--798877794400203668--999837
Q ss_pred --EECCCCCH
Q ss_conf --00027775
Q gi|254780170|r 228 --PAIIQGDT 235 (342)
Q Consensus 228 --~avr~gD~ 235 (342)
T Consensus 230 niiavr~~~~ 239 (272)
T PRK09861 230 NILVAREDNK 239 (272)
T ss_pred EEEEECCCCC
T ss_conf 9999827676