HHsearch alignment for GI: 254780170 and conserved domain: PRK10341
>PRK10341 DNA-binding transcriptional activator TdcA; Provisional.
Probab=92.55 E-value=0.91 Score=25.17 Aligned_cols=159 Identities=8% Similarity=0.063 Sum_probs=97.5
Q ss_pred CEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCC---CCCCHHHHCCCCEEE-E
Q ss_conf 202599814310026774396279981243253201102784353223440234630211---347536417862034-3
Q gi|254780170|r 76 SKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKK---GISSVSQLSGASICV-Q 151 (342)
Q Consensus 76 ~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~---~i~s~~dL~G~~I~v-~ 151 (342)
T Consensus 126 v~i~l~~~~~~~~~~~l~~g~~D~~i~~~~~~~-~--~~~~~~~-~l~~~~~~lv~~~~~p~~~~~~l~~L~~~~~il~~ 201 (312)
T PRK10341 126 AQVSMYEAQLSSFLPAIRDGRLDFAIGTLSNEM-K--LQDLHVE-PLFESEFVLVASKSRTCTGTTTLESLKNEQWVLPQ 201 (312)
T ss_pred CEEEEEECCHHHHHHHHHCCCCEEEEEECCCCC-C--CCCEEEE-EEECCCEEEEECCCCCCCCCCCHHHHCCCCEEEEC
T ss_conf 779999899999999996698619997436877-7--7874999-95124289997675423489798998079868606
Q ss_pred ECCCHHHHHHHHHHHCCCCCCE-EEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEE
Q ss_conf 1342699999999862998507-874798999999873960299825047999998367800100256--4442371010
Q gi|254780170|r 152 AGTTTELTLADYFKAHNMKYHP-IVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAP 228 (342)
Q Consensus 152 ~GTT~e~~l~~~~~~~~~~~~~-v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~ 228 (342)
T Consensus 202 ~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~~i~~lv~~g~gi~~lP~--~~~~---~~~~-~~L~~lpl~~~~~~~~~~l 275 (312)
T PRK10341 202 TNMGYYSELLTTLQRNGISIENIVKTDSVVTIYNLVLNADFLTVIPC--DMTS---PFGS-NQFITIPIKETLPVARYAA 275 (312)
T ss_pred CCCCHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHCCEEEEEHH--HHHH---HHCC-CCEEEEECCCCCCEEEEEE
T ss_conf 99858999999999769998816998909999999997995897269--9996---6318-9899998999885118999
Q ss_pred ECCCCCHHHHHHHHHHH
Q ss_conf 00277757999988774
Q gi|254780170|r 229 AIIQGDTEWYNIVSWTH 245 (342)
Q Consensus 229 avr~gD~~w~d~V~W~~ 245 (342)
T Consensus 276 v~~k~~~-ls~a~~~fi 291 (312)
T PRK10341 276 VWSKNYR-IKKAASVLV 291 (312)
T ss_pred EEECCCC-CCHHHHHHH
T ss_conf 9989398-899999999