HHsearch alignment for GI: 254780170 and conserved domain: PRK11063
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional.
Probab=96.88 E-value=0.016 Score=36.36 Aligned_cols=206 Identities=14% Similarity=0.161 Sum_probs=103.3
Q ss_pred CHHHHHHHHHHHH-HHHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEE
Q ss_conf 9138999999999-999840124421689998579499987178988306889898801509999999999679822025
Q gi|254780170|r 1 MYKDFFVSILCLI-ILFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQ 79 (342)
Q Consensus 1 M~K~~l~~~l~l~-~~~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe 79 (342)
T Consensus 3 ~~~k~~~~~~~l~~~l~l~gCg~~~------~~~~~ikVG~~~gp~--------~ei----~e~~~~~~~ek~--G~~ve 62 (271)
T PRK11063 3 FKFKTFAAVGALIGSLALVGCGQDE------KDPNHIKVGVIVGAE--------QQV----AEVAQKVAKEKY--GLDVE 62 (271)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCC------CCCCEEEEEECCCCH--------HHH----HHHHHHHHHHHC--CCEEE
T ss_conf 0299999999999999750058985------679818998468987--------999----999888888607--97689
Q ss_pred EEEC-CCCCCHHHHHCCCEEEEEECCCCCCC-CHHCCCCCCCC--CCCCCCEEEEEECCCCCCCHHHH-CCCCEEEEECC
Q ss_conf 9981-43100267743962799812432532-01102784353--22344023463021134753641-78620343134
Q gi|254780170|r 80 YLPL-NAKERFLALQSKQIDILSRNTDWTLL-REISLGLAFRP--ITYFDGQGFIMHKKKGISSVSQL-SGASICVQAGT 154 (342)
Q Consensus 80 ~v~~-~~~~rf~aL~sG~vDil~~~~T~T~~-Rd~~~~v~Fs~--~~~~dgq~~lVrk~~~i~s~~dL-~G~~I~v~~GT 154 (342)
T Consensus 63 iv~FsDy~~pN~AL~~G~iDaN~fQH~~yL~~~nk~~g~~L~~v~~~~~~P~glY---S~K~ksl~elp~Ga~IaIPND~ 139 (271)
T PRK11063 63 LVTFNDYVLPNEALSKGDIDANAFQHKPYLDQQIKDRGYKLVAVGNTFVYPIAGY---SKKIKSLDELQDGSQVAVPNDP 139 (271)
T ss_pred EEEECCCHHHHHHHHCCCCCHHHHHCHHHHHHHHHHCCCCEEEEEEEEEEEEEEE---ECCCCCHHHCCCCCEEEECCCC
T ss_conf 9993683215589867984423455799999999977995799866778415864---2365886475699999804885
Q ss_pred CHHHHHHHHHHHCCC---------------------CCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCH-
Q ss_conf 269999999986299---------------------8507874798999999873960299825047999998367800-
Q gi|254780170|r 155 TTELTLADYFKAHNM---------------------KYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPS- 212 (342)
Q Consensus 155 T~e~~l~~~~~~~~~---------------------~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~- 212 (342)
T Consensus 140 sN~~RAL~lL~~aGLIkLk~~~~~~~T~~DI~~Npk~l~~~e~d-aaql~rsl~D~dv~~aviN~~--~a~~agl-~p~k 215 (271)
T PRK11063 140 TNLGRSLLLLQKVGLIKLKDGVGLLPTVLDIVENPKNLKIVELE-APQLPRSLDDAQIALAVINTT--YASQIGL-TPAK 215 (271)
T ss_pred CHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHCCCCCCEEEECC-HHHHHHHCCCCCEEEEEECHH--HHHHCCC-CCCC
T ss_conf 60999999999889889779999878966885488774899903-776443135765108981477--8977798-9342
Q ss_pred HHCCCCCCCCCCCEE--EECCCCCH
Q ss_conf 100256444237101--00027775
Q gi|254780170|r 213 EHVILPDIISKSPLA--PAIIQGDT 235 (342)
Q Consensus 213 ~~~il~e~iskEPlg--~avr~gD~ 235 (342)
T Consensus 216 dal~~E~--~~~py~Nvivvr~~~k 238 (271)
T PRK11063 216 DGIFVED--KDSPYVNLIVAREDNK 238 (271)
T ss_pred CCEEECC--CCCCEEEEEEECCCCC
T ss_conf 5047778--9998389999827777