HHsearch alignment for GI: 254780170 and conserved domain: TIGR01096
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein; InterPro: IPR005768 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The later are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homolog proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute through the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped into eight families of clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homolog with catalytic activity. ; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space.
Probab=100.00 E-value=0 Score=529.04 Aligned_cols=288 Identities=28% Similarity=0.483 Sum_probs=274.1
Q ss_pred CCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCC----CEEEEEECCCCCCHHHHHCCCE
Q ss_conf 442168999857949998717898830688989880150999999999967982----2025998143100267743962
Q gi|254780170|r 22 TNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDP----SKIQYLPLNAKERFLALQSKQI 97 (342)
Q Consensus 22 a~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~----~kVe~v~~~~~~rf~aL~sG~v 97 (342)
T Consensus 15 ~~~a~~~a~~~~~~v~~gt~~~y~PF~~~~a~G~~~GFDvDl~~alc~~~~gD~GWdh~~c~~~~~~~~~liPsL~~k~~ 94 (333)
T TIGR01096 15 SSAATAAAAKEKGSVRIGTETAYPPFEFKDADGKLVGFDVDLANALCKEMKGDPGWDHAKCKFVEQAFDGLIPSLKAKKV 94 (333)
T ss_pred HHHCCHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCE
T ss_conf 86215688852880799865787986551889545632678999999984589996431488842756652025453806
Q ss_pred EEEEE-CCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCC-CCHHH-----------------------HC-CCCEEEE
Q ss_conf 79981-24325320110278435322344023463021134-75364-----------------------17-8620343
Q gi|254780170|r 98 DILSR-NTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGI-SSVSQ-----------------------LS-GASICVQ 151 (342)
Q Consensus 98 Dil~~-~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i-~s~~d-----------------------L~-G~~I~v~ 151 (342)
T Consensus 95 Dai~an~~~It~~R--~~~i~F~~~yy~~~~~f~v~~~~~~~~~~~~~E~~~Ld~~A~~~K~~~d~~~~~L~nG~~~gV~ 172 (333)
T TIGR01096 95 DAIMANAMSITDER--QKQIDFSDPYYATGAGFVVKKDSDLAKTLEDGENYSLDNQADAAKKEIDDVTKFLKNGKKVGVQ 172 (333)
T ss_pred EEEEECCCCCCHHH--HHHHCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 89972665546656--6321144300004430222248875431453303672000379899899899985275489862
Q ss_pred ECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECC
Q ss_conf 13426999999998629985078747989999998739602998250479999983678001002564442371010002
Q gi|254780170|r 152 AGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAII 231 (342)
Q Consensus 152 ~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr 231 (342)
T Consensus 173 ~GTT~~~~~~~~~~~~Nl~v~~~~Y~~~~~~~~dL~~GR~Da~~~D~~~l~~~~~~~~~gkd~~~~g~~~~~~PLGP~~~ 252 (333)
T TIGR01096 173 SGTTHEQYLKDEFKPKNLGVDIVEYDSYDNANMDLKAGRIDAVLADASVLAEGFLKPPNGKDLKFVGPKVTDEPLGPVKY 252 (333)
T ss_pred CCCCHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCC
T ss_conf 68848999986244337426666408867999997579621774365888888737898886377283226889898555
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCC-CHHHCCCCHHHHHHHHHHCCCHHHHH
Q ss_conf 77757999988774433112123301520898862267177887623588765-03337998679999999718699987
Q gi|254780170|r 232 QGDTEWYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSN-IGEALGLTKDWTYRIIRHMGNYGEMF 310 (342)
Q Consensus 232 ~gD~~w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~-~g~~lgl~~~~~~~~i~~vGNYgei~ 310 (342)
T Consensus 253 FG~g~W~DiV~W~~YAL~~A~E~Gig~rk~de~~~-s~Np~i~r~lg~~--~Dt~G~eL~~~~n~Al~~~~adGtY~~i~ 329 (333)
T TIGR01096 253 FGDGYWFDIVRWSAYALVAAEEVGIGLRKVDEVKA-STNPEIKRLLGSE--GDTIGKELKAKFNKALKAIRADGTYQKIS 329 (333)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHC-CCCCCHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 78883001214466777634432125345588851-8883023220455--65121899999999999998658746888
Q ss_pred HHHC
Q ss_conf 8864
Q gi|254780170|r 311 DRNL 314 (342)
Q Consensus 311 ~rnl 314 (342)
T Consensus 330 ~kwf 333 (333)
T TIGR01096 330 KKWF 333 (333)
T ss_pred HHCC
T ss_conf 6519