HHsearch alignment for GI: 254780170 and conserved domain: TIGR03431

>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function.
Probab=99.50  E-value=1.9e-12  Score=99.10  Aligned_cols=227  Identities=14%  Similarity=0.107  Sum_probs=138.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             91389999999999998401244216899985794999871789883068898988015099999999996798220259
Q gi|254780170|r    1 MYKDFFVSILCLIILFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQY   80 (342)
Q Consensus         1 M~K~~l~~~l~l~~~~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~   80 (342)
T Consensus         1 m~~r~l~~~~~~~~~~~~~a~a~-~------~p~~l~~gv~P~~~~~~~~---~~~~P----l~~yL~~~lg---~~Ve~   63 (288)
T TIGR03431         1 MLRRLILSLVAAFMLISSNAQAE-D------WPKELNFGIIPTENASDLK---QRWEP----LADYLSKKLG---VKVKL   63 (288)
T ss_pred             CCHHHHHHHHHHHHHHCCHHHHC-C------CCCEEEEEEECCCCHHHHH---HHHHH----HHHHHHHHHC---CCEEE
T ss_conf             90889999999999974322430-4------8836899980699999999---99999----9999999878---97899


Q ss_pred             EEC-CCCCCHHHHHCCCEEEEEECC-CCCCCCHHCCCC-CCCC-------CCCCCCEEEEEECCCCCCCHHHHCCCCEEE
Q ss_conf             981-431002677439627998124-325320110278-4353-------223440234630211347536417862034
Q gi|254780170|r   81 LPL-NAKERFLALQSKQIDILSRNT-DWTLLREISLGL-AFRP-------ITYFDGQGFIMHKKKGISSVSQLSGASICV  150 (342)
Q Consensus        81 v~~-~~~~rf~aL~sG~vDil~~~~-T~T~~Rd~~~~v-~Fs~-------~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v  150 (342)
T Consensus        64 ~~~~~y~~~~eal~~g~~Dia~~~p~~yv~a~~~-~~~~~la~~~~~~g~~~y~--s~iivr~Ds~i~sl~DLkGk~iaf  140 (288)
T TIGR03431        64 FFATDYAGVIEGMRFGKVDIAWYGPSSYAEAYQK-ANAEAFAIEVNADGSTGYY--SVLIVKKDSPIKSLEDLKGKTFGF  140 (288)
T ss_pred             EECCCHHHHHHHHHCCCCEEEEECCHHHHHHHHC-CCCEEEEEEECCCCCCCEE--EEEEEECCCCCCCHHHHCCCEEEE
T ss_conf             9689999999999859830999884788998652-5974889985158886457--999998999888778957987660


Q ss_pred             EE-CCCHHHHHH-HHH-HHCCCCC-----CEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHH-CCC-CHHHCCCCCC
Q ss_conf             31-342699999-999-8629985-----078747989999998739602998250479999983-678-0010025644
Q gi|254780170|r  151 QA-GTTTELTLA-DYF-KAHNMKY-----HPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLT-NDR-PSEHVILPDI  220 (342)
Q Consensus       151 ~~-GTT~e~~l~-~~~-~~~~~~~-----~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~-~~~-p~~~~il~e~  220 (342)
T Consensus       141 ~~~~StSG~l~P~~~L~~~~g~~~~~~f~~v~~~gshd~~~~aV~~G~~Dag~~~~~~~~~~~~~~~~~~~~~lrvi~~S  220 (288)
T TIGR03431       141 VDPNSTSGFLVPSYYLFKKNGIKPKEYFKKVTFSGSHEAAILAVANGTVDAATTNDENLDRMIRKGQPDAMEDLRIIWKS  220 (288)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHEEECCCHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCHHHCEEEEEEC
T ss_conf             28741111399999999865997254553133157878999999859932998338889999974796303136999867


Q ss_pred             CCCCCEEEECCCC-CHHHHHHHHHHHHH
Q ss_conf             4237101000277-75799998877443
Q gi|254780170|r  221 ISKSPLAPAIIQG-DTEWYNIVSWTHYA  247 (342)
Q Consensus       221 iskEPlg~avr~g-D~~w~d~V~W~~~a  247 (342)
T Consensus       221 ~~iP~~~~~v~~~l~~~~~~~i~~all~  248 (288)
T TIGR03431       221 PLIPNGPIVYRKDLPADLKAKIRKAFLN  248 (288)
T ss_pred             CCCCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf             8888771899699999999999999980