HHsearch alignment for GI: 254780170 and conserved domain: TIGR03431
>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function.
Probab=99.50 E-value=1.9e-12 Score=99.10 Aligned_cols=227 Identities=14% Similarity=0.107 Sum_probs=138.0
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 91389999999999998401244216899985794999871789883068898988015099999999996798220259
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQY 80 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~ 80 (342)
T Consensus 1 m~~r~l~~~~~~~~~~~~~a~a~-~------~p~~l~~gv~P~~~~~~~~---~~~~P----l~~yL~~~lg---~~Ve~ 63 (288)
T TIGR03431 1 MLRRLILSLVAAFMLISSNAQAE-D------WPKELNFGIIPTENASDLK---QRWEP----LADYLSKKLG---VKVKL 63 (288)
T ss_pred CCHHHHHHHHHHHHHHCCHHHHC-C------CCCEEEEEEECCCCHHHHH---HHHHH----HHHHHHHHHC---CCEEE
T ss_conf 90889999999999974322430-4------8836899980699999999---99999----9999999878---97899
Q ss_pred EEC-CCCCCHHHHHCCCEEEEEECC-CCCCCCHHCCCC-CCCC-------CCCCCCEEEEEECCCCCCCHHHHCCCCEEE
Q ss_conf 981-431002677439627998124-325320110278-4353-------223440234630211347536417862034
Q gi|254780170|r 81 LPL-NAKERFLALQSKQIDILSRNT-DWTLLREISLGL-AFRP-------ITYFDGQGFIMHKKKGISSVSQLSGASICV 150 (342)
Q Consensus 81 v~~-~~~~rf~aL~sG~vDil~~~~-T~T~~Rd~~~~v-~Fs~-------~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v 150 (342)
T Consensus 64 ~~~~~y~~~~eal~~g~~Dia~~~p~~yv~a~~~-~~~~~la~~~~~~g~~~y~--s~iivr~Ds~i~sl~DLkGk~iaf 140 (288)
T TIGR03431 64 FFATDYAGVIEGMRFGKVDIAWYGPSSYAEAYQK-ANAEAFAIEVNADGSTGYY--SVLIVKKDSPIKSLEDLKGKTFGF 140 (288)
T ss_pred EECCCHHHHHHHHHCCCCEEEEECCHHHHHHHHC-CCCEEEEEEECCCCCCCEE--EEEEEECCCCCCCHHHHCCCEEEE
T ss_conf 9689999999999859830999884788998652-5974889985158886457--999998999888778957987660
Q ss_pred EE-CCCHHHHHH-HHH-HHCCCCC-----CEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHH-CCC-CHHHCCCCCC
Q ss_conf 31-342699999-999-8629985-----078747989999998739602998250479999983-678-0010025644
Q gi|254780170|r 151 QA-GTTTELTLA-DYF-KAHNMKY-----HPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLT-NDR-PSEHVILPDI 220 (342)
Q Consensus 151 ~~-GTT~e~~l~-~~~-~~~~~~~-----~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~-~~~-p~~~~il~e~ 220 (342)
T Consensus 141 ~~~~StSG~l~P~~~L~~~~g~~~~~~f~~v~~~gshd~~~~aV~~G~~Dag~~~~~~~~~~~~~~~~~~~~~lrvi~~S 220 (288)
T TIGR03431 141 VDPNSTSGFLVPSYYLFKKNGIKPKEYFKKVTFSGSHEAAILAVANGTVDAATTNDENLDRMIRKGQPDAMEDLRIIWKS 220 (288)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHEEECCCHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCHHHCEEEEEEC
T ss_conf 28741111399999999865997254553133157878999999859932998338889999974796303136999867
Q ss_pred CCCCCEEEECCCC-CHHHHHHHHHHHHH
Q ss_conf 4237101000277-75799998877443
Q gi|254780170|r 221 ISKSPLAPAIIQG-DTEWYNIVSWTHYA 247 (342)
Q Consensus 221 iskEPlg~avr~g-D~~w~d~V~W~~~a 247 (342)
T Consensus 221 ~~iP~~~~~v~~~l~~~~~~~i~~all~ 248 (288)
T TIGR03431 221 PLIPNGPIVYRKDLPADLKAKIRKAFLN 248 (288)
T ss_pred CCCCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 8888771899699999999999999980