HHsearch alignment for GI: 254780170 and conserved domain: cd00494
>cd00494 HMBS Hydroxymethylbilane synthase (HMBS), also known as porphobilinogen deaminase (PBGD), is an intermediate enzyme in the biosynthetic pathway of tetrapyrrolic ring systems, such as heme, chlorophylls, and vitamin B12. HMBS catalyzes the conversion of porphobilinogen (PBG) into hydroxymethylbilane (HMB). HMBS consists of three domains, and is believed to bind substrate through a hinge-bending motion of domains I and II. HMBS is found in all organisms except viruses.
Probab=92.45 E-value=0.93 Score=25.09 Aligned_cols=146 Identities=19% Similarity=0.168 Sum_probs=78.3
Q ss_pred CCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCC-CCCEEEEEECCCCCCCHHHH-CCCCEEEEECCCHHHHHHHH
Q ss_conf 10026774396279981243253201102784353223-44023463021134753641-78620343134269999999
Q gi|254780170|r 86 KERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITY-FDGQGFIMHKKKGISSVSQL-SGASICVQAGTTTELTLADY 163 (342)
Q Consensus 86 ~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~-~dgq~~lVrk~~~i~s~~dL-~G~~I~v~~GTT~e~~l~~~ 163 (342)
T Consensus 59 kele~aLl~g~iDiAVHSlKDlPt~~-~~gl~i~avl~R~dprDvlv~~--~~~~l~~lp~ga~IG----TSS~RR-~aq 130 (292)
T cd00494 59 KELEEALLNGEIDLAVHSLKDVPTEL-PEGLVLGAIPKREDPRDALVSR--NGSSLEDLPAGSVVG----TSSLRR-QAQ 130 (292)
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCC-CCCCEEEEEECCCCCCCHHHCC--CCHHHHCCCCCCEEE----ECCCCH-HHH
T ss_conf 99999997098787986046577747-9874687663478822244406--400221289898785----147437-999
Q ss_pred HHHCCCCCCEEEECCH-HHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHH-----CCCCCCCCCCCEEEECCCCCHHH
Q ss_conf 9862998507874798-99999987396029982504799999836780010-----02564442371010002777579
Q gi|254780170|r 164 FKAHNMKYHPIVFERV-EEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEH-----VILPDIISKSPLAPAIIQGDTEW 237 (342)
Q Consensus 164 ~~~~~~~~~~v~~~~~-~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~-----~il~e~iskEPlg~avr~gD~~w 237 (342)
T Consensus 131 l~~~~pdl~i~~iRGNV~TRl~KL~~g~~DaiILA~AGL--~RLgl~~~i~~~l~~~~~~P-A~gQGaiave~r~~d~~~ 207 (292)
T cd00494 131 LKRKRPDLKFEPLRGNVDTRLRKLDEGEYDAIILAAAGL--KRLGLEDRITQYLSPEVMLP-AVGQGALAIECRKGDEEL 207 (292)
T ss_pred HHHHCCCCCEEECCCCHHHHHHHHHCCCCCEEEEHHHHH--HHCCCCCCCCCCCCHHCCCC-CCCCCEEEEEEECCCHHH
T ss_conf 998689995467658899999985167874775446567--55478420230036310788-766530688872489888
Q ss_pred HHHHH
Q ss_conf 99988
Q gi|254780170|r 238 YNIVS 242 (342)
Q Consensus 238 ~d~V~ 242 (342)
T Consensus 208 ~~~l~ 212 (292)
T cd00494 208 LALLK 212 (292)
T ss_pred HHHHH
T ss_conf 88887