Query gi|254780170|ref|YP_003064583.1| cationic amino acid ABC transporter, periplasmic binding protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 342
No_of_seqs 256 out of 2355
Neff 6.3
Searched_HMMs 39220
Date Mon May 23 14:37:35 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780170.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01096 3A0103s03R lysine-ar 100.0 0 0 529.0 20.5 288 22-314 15-333 (333)
2 PRK10797 glutamate and asparta 100.0 0 0 407.6 23.3 225 21-247 27-255 (302)
3 PRK11917 bifunctional adhesin/ 100.0 0 0 374.8 25.2 239 2-247 4-245 (259)
4 PRK11260 cystine transporter s 100.0 0 0 343.1 23.0 238 1-249 4-245 (264)
5 PRK09495 glnH glutamine ABC tr 100.0 6.4E-43 0 292.2 21.8 224 1-245 1-225 (247)
6 COG0834 HisJ ABC-type amino ac 100.0 2.1E-33 5.3E-38 231.9 22.6 221 26-251 26-252 (275)
7 cd00134 PBPb Bacterial peripla 100.0 1.2E-33 2.9E-38 233.6 19.9 207 36-253 1-209 (218)
8 smart00062 PBPb Bacterial peri 100.0 3.4E-32 8.6E-37 224.3 20.6 211 35-254 1-211 (219)
9 pfam00497 SBP_bac_3 Bacterial 100.0 4.9E-31 1.2E-35 216.9 19.5 205 36-250 1-210 (224)
10 PRK10859 putative transglycosy 99.9 2.1E-24 5.3E-29 174.9 23.1 229 4-242 8-246 (507)
11 TIGR02995 ectoine_ehuB ectoine 99.9 8.7E-26 2.2E-30 183.6 14.0 245 10-263 10-275 (285)
12 PRK09959 hybrid sensory histid 99.9 1.3E-21 3.3E-26 157.2 18.9 217 29-258 297-516 (1197)
13 PRK09959 hybrid sensory histid 99.8 1.9E-18 4.9E-23 137.1 21.1 246 1-258 1-273 (1197)
14 COG4623 Predicted soluble lyti 99.7 2.8E-16 7.2E-21 123.4 15.9 218 24-255 13-236 (473)
15 PRK11553 alkanesulfonate trans 99.7 1.5E-14 3.8E-19 112.5 16.5 182 1-205 1-191 (314)
16 TIGR03431 PhnD phosphonate ABC 99.5 1.9E-12 4.9E-17 99.1 14.8 227 1-247 1-248 (288)
17 COG3221 PhnD ABC-type phosphat 99.4 1.2E-11 3.1E-16 94.1 13.3 236 1-246 1-256 (299)
18 PRK11480 tauA taurine transpor 99.3 5.6E-11 1.4E-15 89.8 12.8 153 35-205 24-184 (320)
19 TIGR01098 3A0109s03R phosphona 99.2 4.4E-09 1.1E-13 77.9 17.1 233 1-245 1-296 (299)
20 pfam09084 NMT1 NMT1/THI5 like. 99.1 3E-09 7.7E-14 78.9 12.7 120 76-197 21-147 (216)
21 COG0715 TauA ABC-type nitrate/ 99.1 3.1E-09 7.9E-14 78.8 10.9 178 77-257 62-252 (335)
22 TIGR03427 ABC_peri_uca ABC tra 99.0 1.6E-09 4.1E-14 80.6 9.0 167 34-218 2-178 (328)
23 KOG1052 consensus 99.0 1.2E-07 3.2E-12 68.7 18.1 258 32-305 214-605 (656)
24 KOG1053 consensus 99.0 1.1E-09 2.8E-14 81.7 5.9 185 57-245 466-788 (1258)
25 COG3181 Uncharacterized protei 98.6 4.2E-06 1.1E-10 59.0 14.0 245 58-312 41-314 (319)
26 COG2358 Imp TRAP-type uncharac 98.6 4.7E-07 1.2E-11 65.0 8.4 153 34-197 26-193 (321)
27 COG4521 TauA ABC-type taurine 98.5 2.9E-06 7.4E-11 60.0 11.5 175 6-204 10-191 (334)
28 KOG4440 consensus 98.5 6.8E-07 1.7E-11 64.0 8.1 188 57-257 463-796 (993)
29 pfam03401 Bug Tripartite trica 98.3 4.7E-06 1.2E-10 58.7 8.5 223 64-311 2-270 (274)
30 KOG1054 consensus 98.2 2.2E-06 5.7E-11 60.7 5.1 104 27-134 411-531 (897)
31 TIGR01729 taurine_ABC_bnd taur 98.2 6.7E-06 1.7E-10 57.7 7.2 158 36-205 1-166 (304)
32 COG1638 DctP TRAP-type C4-dica 98.1 7.2E-05 1.8E-09 51.2 10.2 146 52-206 37-221 (332)
33 TIGR01728 SsuA_fam ABC transpo 98.0 5.2E-05 1.3E-09 52.0 8.4 176 75-254 31-226 (311)
34 smart00079 PBPe Eukaryotic hom 98.0 4.1E-05 1.1E-09 52.7 7.7 109 136-256 1-123 (134)
35 pfam00060 Lig_chan Ligand-gate 97.8 0.00017 4.3E-09 48.8 8.4 165 128-304 91-269 (270)
36 pfam03480 SBP_bac_7 Bacterial 97.8 0.00029 7.4E-09 47.3 9.5 138 59-205 13-188 (285)
37 pfam04069 OpuAC Substrate bind 97.7 0.00049 1.3E-08 45.9 9.6 131 63-199 19-178 (256)
38 PRK00489 hisG ATP phosphoribos 97.5 0.0011 2.9E-08 43.6 9.6 197 77-295 45-250 (287)
39 PRK11119 proX glycine betaine 97.5 0.005 1.3E-07 39.5 12.3 176 1-199 2-212 (332)
40 PRK09861 cytoplasmic membrane 97.4 0.013 3.3E-07 36.8 13.6 194 14-235 18-239 (272)
41 PRK12681 cysB transcriptional 97.3 0.015 3.8E-07 36.5 13.1 217 32-277 91-316 (324)
42 PRK12679 cbl transcriptional r 97.2 0.022 5.5E-07 35.5 15.6 204 32-264 91-303 (316)
43 PRK12683 transcriptional regul 97.1 0.026 6.7E-07 34.9 12.1 180 32-235 91-279 (308)
44 COG1464 NlpA ABC-type metal io 97.0 0.0098 2.5E-07 37.6 9.5 228 1-278 1-257 (268)
45 COG1910 Periplasmic molybdate- 97.0 0.011 2.7E-07 37.4 9.6 151 78-240 20-192 (223)
46 PRK09501 potD spermidine/putre 96.9 0.037 9.4E-07 34.0 16.8 240 1-277 1-304 (348)
47 PRK12680 transcriptional regul 96.9 0.038 9.7E-07 33.9 18.1 220 32-297 91-320 (327)
48 COG2113 ProX ABC-type proline/ 96.9 0.037 9.4E-07 34.0 11.6 117 63-181 45-181 (302)
49 pfam03466 LysR_substrate LysR 96.9 0.041 1.1E-06 33.7 15.0 190 32-245 4-205 (209)
50 PRK11063 metQ DL-methionine tr 96.9 0.016 4E-07 36.4 9.6 206 1-235 3-238 (271)
51 PRK12682 transcriptional regul 96.4 0.079 2E-06 31.9 10.7 182 32-237 91-281 (309)
52 PRK11242 DNA-binding transcrip 96.4 0.086 2.2E-06 31.6 13.1 177 32-235 89-275 (292)
53 PRK12684 transcriptional regul 96.3 0.096 2.4E-06 31.4 12.4 181 32-236 91-280 (313)
54 TIGR03414 ABC_choline_bnd chol 96.3 0.083 2.1E-06 31.8 10.0 130 61-196 24-178 (290)
55 COG1732 OpuBC Periplasmic glyc 96.2 0.074 1.9E-06 32.0 9.6 198 32-254 31-275 (300)
56 COG0725 ModA ABC-type molybdat 96.2 0.11 2.9E-06 30.9 12.3 212 1-235 1-228 (258)
57 TIGR00212 hemC porphobilinogen 96.0 0.043 1.1E-06 33.5 7.4 136 87-242 62-217 (312)
58 PRK10677 modA molybdate transp 96.0 0.15 3.8E-06 30.2 15.3 176 1-198 1-195 (257)
59 COG4663 FcbT1 TRAP-type mannit 95.9 0.066 1.7E-06 32.4 7.9 145 33-194 34-218 (363)
60 pfam09084 NMT1 NMT1/THI5 like. 95.7 0.025 6.4E-07 35.1 5.4 76 162-240 14-91 (216)
61 COG0040 HisG ATP phosphoribosy 95.7 0.051 1.3E-06 33.1 6.6 179 78-277 45-237 (290)
62 PRK01686 hisG ATP phosphoribos 95.3 0.059 1.5E-06 32.7 6.0 131 77-224 46-180 (212)
63 pfam03180 Lipoprotein_9 NLPA l 95.2 0.28 7E-06 28.4 11.7 158 64-234 17-202 (236)
64 PRK09791 putative DNA-binding 95.1 0.3 7.6E-06 28.2 14.3 182 32-235 93-281 (302)
65 TIGR02424 TF_pcaQ pca operon t 94.5 0.42 1.1E-05 27.3 9.4 164 76-249 122-295 (300)
66 TIGR02122 TRAP_TAXI TRAP trans 94.3 0.14 3.5E-06 30.4 5.8 184 1-203 1-199 (319)
67 pfam01634 HisG ATP phosphoribo 94.3 0.44 1.1E-05 27.2 8.3 123 87-224 5-133 (161)
68 pfam01379 Porphobil_deam Porph 94.2 0.44 1.1E-05 27.2 8.1 145 87-241 61-212 (213)
69 CHL00180 rbcR LysR transcripti 94.0 0.55 1.4E-05 26.6 12.3 188 27-235 86-287 (307)
70 PRK00072 hemC porphobilinogen 93.9 0.56 1.4E-05 26.5 8.6 146 86-242 63-216 (300)
71 PRK10682 putrescine transporte 93.6 0.63 1.6E-05 26.2 17.8 232 2-262 5-320 (370)
72 PRK01066 porphobilinogen deami 93.4 0.68 1.7E-05 26.0 10.6 141 88-242 81-227 (234)
73 PRK11480 tauA taurine transpor 93.3 0.41 1.1E-05 27.3 6.7 23 249-271 251-273 (320)
74 TIGR03339 phn_lysR aminoethylp 93.0 0.78 2E-05 25.6 11.0 172 33-234 86-266 (279)
75 TIGR02285 TIGR02285 conserved 92.9 0.82 2.1E-05 25.4 9.5 202 35-241 20-260 (293)
76 PRK09986 DNA-binding transcrip 92.7 0.87 2.2E-05 25.3 11.8 177 32-234 79-264 (278)
77 TIGR00787 dctP TRAP transporte 92.7 0.097 2.5E-06 31.3 2.7 189 53-255 7-244 (267)
78 PRK10341 DNA-binding transcrip 92.5 0.91 2.3E-05 25.2 12.9 159 76-245 126-291 (312)
79 cd00494 HMBS Hydroxymethylbila 92.4 0.93 2.4E-05 25.1 9.0 146 86-242 59-212 (292)
80 pfam03180 Lipoprotein_9 NLPA l 92.0 0.18 4.7E-06 29.6 3.5 91 147-240 2-112 (236)
81 PRK11151 DNA-binding transcrip 91.6 1.2 2.9E-05 24.5 16.1 179 33-235 90-277 (305)
82 TIGR03427 ABC_peri_uca ABC tra 90.9 0.39 9.9E-06 27.5 4.2 60 47-110 99-164 (328)
83 PRK11233 nitrogen assimilation 90.8 1.4 3.5E-05 24.0 16.9 181 32-235 89-275 (305)
84 COG0181 HemC Porphobilinogen d 90.0 1.6 4.1E-05 23.6 7.4 146 86-242 62-215 (307)
85 smart00094 TR_FER Transferrin. 90.0 0.73 1.9E-05 25.8 5.0 188 62-256 12-280 (332)
86 PRK09861 cytoplasmic membrane 90.0 0.42 1.1E-05 27.3 3.7 94 144-240 32-146 (272)
87 PRK13583 hisG ATP phosphoribos 89.9 1.7 4.2E-05 23.5 7.5 134 77-219 46-195 (226)
88 PRK09906 DNA-binding transcrip 89.3 1.9 4.7E-05 23.2 14.2 178 31-234 87-275 (296)
89 PRK11716 DNA-binding transcrip 88.7 2 5.2E-05 22.9 11.4 179 33-234 66-253 (269)
90 PRK10523 lipoprotein involved 87.6 0.94 2.4E-05 25.1 4.2 57 1-57 2-70 (234)
91 PRK10852 thiosulfate transport 87.5 2.4 6.1E-05 22.5 11.0 181 119-318 115-327 (338)
92 TIGR00070 hisG ATP phosphoribo 87.2 1.8 4.6E-05 23.3 5.5 187 76-277 44-262 (317)
93 COG4588 AcfC Accessory coloniz 87.1 2.5 6.5E-05 22.3 13.2 130 61-197 36-191 (252)
94 PRK09508 leuO leucine transcri 86.9 2.6 6.6E-05 22.3 10.3 141 76-229 141-288 (314)
95 COG0001 HemL Glutamate-1-semia 84.9 1.5 3.8E-05 23.8 4.1 115 54-197 89-207 (432)
96 PRK11898 prephenate dehydratas 84.8 2 5.1E-05 23.0 4.7 131 63-205 13-157 (285)
97 TIGR00713 hemL glutamate-1-sem 83.6 2.7 6.9E-05 22.1 5.0 116 54-197 84-207 (434)
98 PRK11062 nhaR transcriptional 83.4 3.8 9.6E-05 21.3 10.8 145 33-195 92-241 (296)
99 PRK13584 hisG ATP phosphoribos 83.2 3.6 9.2E-05 21.4 5.5 107 77-196 44-150 (204)
100 PRK10622 pheA bifunctional cho 83.2 2.9 7.3E-05 22.0 4.9 137 46-197 105-255 (386)
101 PRK11899 prephenate dehydratas 81.1 4.3 0.00011 20.9 5.2 130 48-196 8-150 (284)
102 PRK09701 D-allose transporter 81.1 4.6 0.00012 20.7 14.4 82 1-103 1-89 (311)
103 pfam00800 PDT Prephenate dehyd 81.0 2.5 6.5E-05 22.3 4.0 118 65-195 12-145 (181)
104 PRK11873 arsM arsenite S-adeno 76.7 6.2 0.00016 19.9 6.9 132 51-189 96-240 (258)
105 TIGR03227 PhnS 2-aminoethylpho 76.2 6.4 0.00016 19.8 16.5 181 64-250 58-295 (367)
106 PRK11013 DNA-binding transcrip 75.5 6.7 0.00017 19.7 14.1 178 32-235 92-278 (309)
107 TIGR02294 nickel_nikA nickel A 75.2 5 0.00013 20.5 4.1 80 170-249 199-284 (513)
108 COG4939 Major membrane immunog 74.3 2.1 5.4E-05 22.8 2.0 69 1-69 1-86 (147)
109 PRK07377 hypothetical protein; 72.6 6.7 0.00017 19.7 4.2 67 29-103 70-137 (185)
110 PRK10959 outer membrane protei 71.1 3.8 9.6E-05 21.2 2.7 24 1-24 1-24 (212)
111 PRK10137 predicted glycosyl hy 70.7 3.9 1E-04 21.2 2.7 29 1-29 1-29 (781)
112 PRK06934 flavodoxin; Provision 70.4 8 0.0002 19.2 4.2 35 47-81 60-94 (221)
113 PRK09408 ompX outer membrane p 67.7 9 0.00023 18.9 4.0 35 1-43 1-35 (171)
114 PRK10877 thiol:disulfide inter 67.5 10 0.00026 18.5 5.3 35 1-35 1-35 (232)
115 PRK11482 putative DNA-binding 67.4 10 0.00026 18.5 12.5 157 77-248 94-262 (266)
116 pfam06649 DUF1161 Protein of u 65.6 8.6 0.00022 19.0 3.6 35 1-35 1-40 (75)
117 COG2107 Predicted periplasmic 64.4 12 0.0003 18.1 6.1 49 143-195 93-141 (272)
118 pfam06551 DUF1120 Protein of u 63.2 2.6 6.6E-05 22.3 0.5 39 1-39 1-39 (145)
119 TIGR03261 phnS2 putative 2-ami 62.4 13 0.00032 17.9 15.0 179 62-245 37-271 (334)
120 COG1511 Predicted membrane pro 61.5 13 0.00034 17.8 5.3 72 23-102 36-107 (780)
121 pfam02621 DUF178 Putative peri 61.1 13 0.00034 17.8 6.7 169 76-265 25-206 (248)
122 PRK09755 putative binding prot 60.5 14 0.00035 17.7 6.4 73 171-246 242-317 (535)
123 PRK04405 prsA peptidylprolyl i 60.1 5.9 0.00015 20.0 1.9 46 155-206 129-179 (298)
124 pfam10613 Lig_chan-Glu_bd Liga 60.0 10 0.00026 18.5 3.2 20 53-72 15-34 (65)
125 TIGR02977 phageshock_pspA phag 59.9 6.9 0.00018 19.6 2.2 26 235-276 5-31 (222)
126 PRK13861 type IV secretion sys 59.6 6.3 0.00016 19.8 2.0 22 1-22 1-22 (293)
127 TIGR01286 nifK nitrogenase mol 58.8 5.4 0.00014 20.2 1.6 229 27-281 165-441 (526)
128 pfam11432 DUF3197 Protein of u 57.6 13 0.00034 17.7 3.4 28 220-247 44-72 (113)
129 pfam04076 BOF Bacterial OB fol 55.9 16 0.00042 17.2 5.3 17 1-17 1-17 (126)
130 TIGR00735 hisF imidazoleglycer 55.7 7 0.00018 19.6 1.7 97 134-246 95-221 (312)
131 cd06325 PBP1_ABC_uncharacteriz 55.3 17 0.00043 17.2 8.3 145 47-198 37-192 (281)
132 COG4851 CamS Protein involved 55.3 11 0.00027 18.4 2.5 147 1-156 1-181 (382)
133 PRK07239 bifunctional uroporph 54.8 17 0.00043 17.1 4.5 122 77-198 41-209 (381)
134 TIGR01054 rgy reverse gyrase; 54.4 17 0.00044 17.1 4.8 140 152-311 374-519 (1843)
135 pfam02642 consensus 54.3 17 0.00044 17.1 7.4 103 142-253 90-202 (259)
136 PRK03147 thiol-disulfide oxido 54.1 9.9 0.00025 18.6 2.3 49 1-57 2-55 (176)
137 cd01423 MGS_CPS_I_III Methylgl 53.9 18 0.00045 17.0 4.3 46 145-196 26-77 (116)
138 COG4134 ABC-type uncharacteriz 53.7 18 0.00045 17.0 5.9 20 178-197 244-263 (384)
139 PRK03094 hypothetical protein; 53.6 15 0.00038 17.5 3.1 40 146-196 2-41 (80)
140 PRK10159 outer membrane phosph 53.5 7.9 0.0002 19.2 1.7 22 1-22 1-22 (351)
141 PRK10752 sulfate transporter s 53.3 18 0.00046 17.0 8.2 183 119-317 109-320 (329)
142 COG0077 PheA Prephenate dehydr 53.3 18 0.00046 17.0 3.8 122 68-199 19-154 (279)
143 PRK00031 lolA outer-membrane l 53.2 14 0.00036 17.6 2.9 25 1-25 1-25 (201)
144 PRK10002 outer membrane protei 53.2 8.6 0.00022 19.0 1.8 22 1-22 2-23 (362)
145 PRK03757 hypothetical protein; 53.1 10 0.00026 18.5 2.2 22 1-22 1-22 (191)
146 PRK08206 diaminopropionate amm 52.7 18 0.00047 16.9 5.6 203 67-281 113-351 (379)
147 pfam00405 Transferrin Transfer 52.7 18 0.00047 16.9 6.2 160 62-225 12-233 (328)
148 PRK01326 prsA foldase protein 52.6 14 0.00036 17.6 2.8 46 155-206 130-181 (310)
149 pfam03698 UPF0180 Uncharacteri 51.4 17 0.00044 17.1 3.1 40 146-196 2-41 (80)
150 PRK09706 transcriptional repre 51.3 11 0.00028 18.3 2.1 12 303-314 115-126 (135)
151 PRK10554 outer membrane porin 50.7 9.4 0.00024 18.7 1.7 22 1-22 1-22 (373)
152 PRK00830 consensus 49.9 20 0.00052 16.6 3.8 12 60-71 66-77 (273)
153 COG0687 PotD Spermidine/putres 49.8 20 0.00052 16.6 16.3 209 34-261 32-312 (363)
154 pfam11588 DUF3243 Protein of u 49.5 6.7 0.00017 19.7 0.8 54 273-333 10-63 (81)
155 COG4143 TbpA ABC-type thiamine 49.5 21 0.00053 16.6 13.2 177 1-198 1-224 (336)
156 COG4690 PepD Dipeptidase [Amin 49.1 5.1 0.00013 20.4 0.1 12 46-57 149-160 (464)
157 TIGR00971 3a0106s03 sulfate AB 49.0 21 0.00053 16.5 3.4 182 118-316 102-313 (320)
158 PRK10693 response regulator of 48.9 21 0.00054 16.5 6.5 40 61-104 67-110 (337)
159 PRK10355 xylF D-xylose transpo 48.0 22 0.00056 16.4 6.1 83 1-103 1-88 (330)
160 PRK12450 foldase protein PrsA; 48.0 15 0.00038 17.5 2.3 24 1-24 4-27 (309)
161 pfam06535 RGM_N Repulsive guid 47.1 22 0.00057 16.3 3.5 35 34-69 31-65 (207)
162 PRK03095 prsA peptidylprolyl i 46.8 19 0.00047 16.9 2.7 24 1-25 1-24 (287)
163 PRK01045 ispH 4-hydroxy-3-meth 45.8 24 0.0006 16.2 4.5 153 23-196 42-216 (304)
164 PHA01976 helix-turn-helix prot 45.2 16 0.00041 17.2 2.2 52 238-297 11-62 (67)
165 PRK10837 putative DNA-binding 44.9 24 0.00062 16.1 11.8 179 33-235 88-274 (291)
166 TIGR03061 pip_yhgE_Nterm YhgE/ 44.4 25 0.00063 16.1 5.7 67 27-102 35-102 (164)
167 PRK07060 short chain dehydroge 44.2 25 0.00063 16.1 8.3 14 94-107 75-88 (245)
168 COG0107 HisF Imidazoleglycerol 44.1 18 0.00045 17.0 2.3 15 55-69 27-41 (256)
169 PRK09967 putative outer membra 43.5 24 0.00061 16.2 2.8 21 1-22 1-21 (160)
170 cd01424 MGS_CPS_II Methylglyox 42.1 27 0.00068 15.9 3.7 46 145-196 26-73 (110)
171 pfam08085 Entericidin Enterici 41.3 25 0.00063 16.1 2.6 34 1-34 1-35 (42)
172 PRK05579 bifunctional phosphop 40.9 28 0.00071 15.7 5.6 58 140-197 181-272 (392)
173 PRK01659 consensus 38.0 31 0.00079 15.5 3.9 20 177-196 207-226 (252)
174 TIGR01829 AcAcCoA_reduct aceto 38.0 19 0.00048 16.8 1.6 17 94-112 77-93 (244)
175 PRK09620 hypothetical protein; 37.9 31 0.00079 15.4 5.0 41 157-198 133-182 (229)
176 PRK11627 hypothetical protein; 37.5 32 0.0008 15.4 2.7 22 1-24 1-22 (192)
177 smart00851 MGS MGS-like domain 37.3 32 0.00081 15.4 4.0 48 145-198 13-63 (90)
178 PRK10808 outer membrane protei 37.0 30 0.00076 15.6 2.5 23 1-23 1-23 (347)
179 pfam06510 DUF1102 Protein of u 36.7 32 0.00083 15.3 4.7 10 46-55 52-61 (183)
180 PRK10329 glutaredoxin-like pro 36.2 33 0.00084 15.3 3.9 39 25-71 38-76 (81)
181 KOG1759 consensus 35.7 34 0.00086 15.2 2.9 36 52-88 12-47 (115)
182 PRK04281 consensus 35.4 34 0.00087 15.2 3.8 19 178-196 209-227 (254)
183 PRK09319 bifunctional 3,4-dihy 35.3 22 0.00055 16.4 1.6 43 128-170 140-192 (552)
184 TIGR01916 F420_puta_dedox F420 34.8 31 0.00078 15.5 2.3 119 63-192 65-221 (260)
185 PRK11622 putative ABC transpor 34.7 35 0.00089 15.1 6.1 32 175-206 249-281 (401)
186 pfam07091 FmrO Ribosomal RNA m 34.6 35 0.00089 15.1 4.3 129 36-178 109-243 (248)
187 smart00475 53EXOc 5'-3' exonuc 34.6 35 0.0009 15.1 4.4 51 252-312 165-215 (259)
188 PRK03002 prsA peptidylprolyl i 34.2 36 0.00091 15.1 2.8 45 155-206 124-171 (285)
189 pfam01381 HTH_3 Helix-turn-hel 34.0 31 0.00078 15.5 2.2 40 250-295 15-54 (55)
190 COG3883 Uncharacterized protei 33.9 36 0.00092 15.0 3.2 29 1-29 1-31 (265)
191 PRK09934 putative fimbrial pro 33.9 34 0.00088 15.2 2.4 19 1-19 1-19 (171)
192 pfam12262 Lipase_bact_N Bacter 33.9 28 0.00072 15.7 2.0 20 1-20 1-20 (269)
193 KOG4254 consensus 33.8 14 0.00036 17.7 0.4 97 207-306 412-510 (561)
194 PRK05866 short chain dehydroge 33.2 37 0.00094 15.0 6.9 35 37-71 26-60 (290)
195 cd01302 Cyclic_amidohydrolases 33.0 37 0.00095 15.0 2.8 86 177-284 206-291 (337)
196 pfam09403 FadA Adhesion protei 32.1 33 0.00085 15.2 2.1 21 1-21 1-21 (126)
197 PRK05752 uroporphyrinogen-III 32.0 39 0.00099 14.8 6.3 99 100-201 88-193 (255)
198 TIGR00506 ribB 3,4-dihydroxy-2 31.4 36 0.00092 15.0 2.2 34 177-212 119-152 (230)
199 pfam05968 Bacillus_PapR Bacill 31.4 29 0.00075 15.6 1.7 18 1-18 1-18 (48)
200 pfam05175 MTS Methyltransferas 31.1 40 0.001 14.8 2.7 72 34-110 34-112 (170)
201 smart00530 HTH_XRE Helix-turn- 31.1 36 0.00092 15.0 2.1 40 250-295 16-55 (56)
202 PRK01033 imidazole glycerol ph 31.0 40 0.001 14.7 4.4 13 177-189 84-96 (253)
203 cd00093 HTH_XRE Helix-turn-hel 30.8 38 0.00096 14.9 2.2 40 250-295 18-57 (58)
204 pfam12276 DUF3617 Protein of u 30.4 36 0.00091 15.1 2.0 26 1-26 1-26 (149)
205 pfam10566 Glyco_hydro_97 Glyco 30.4 24 0.00061 16.2 1.1 60 1-62 1-68 (643)
206 TIGR00631 uvrb excinuclease AB 30.2 41 0.0011 14.7 3.6 20 89-111 490-509 (667)
207 PTZ00334 trans-sialidase; Prov 30.2 39 0.001 14.8 2.2 22 1-22 39-60 (780)
208 TIGR02747 TraV type IV conjuga 30.2 36 0.00092 15.0 2.0 22 1-22 1-22 (174)
209 COG1198 PriA Primosomal protei 30.1 42 0.0011 14.6 5.7 52 145-197 482-541 (730)
210 PRK03353 ribB 3,4-dihydroxy-2- 29.9 26 0.00066 16.0 1.2 12 225-236 144-155 (217)
211 PRK05928 hemD uroporphyrinogen 29.6 42 0.0011 14.6 4.8 64 142-205 123-195 (252)
212 TIGR01885 Orn_aminotrans ornit 29.1 23 0.00059 16.3 0.9 131 61-197 61-210 (426)
213 KOG4716 consensus 28.9 44 0.0011 14.5 3.2 49 55-105 232-280 (503)
214 cd01579 AcnA_Bact_Swivel Bacte 28.4 45 0.0011 14.5 3.2 31 283-315 56-93 (121)
215 pfam02402 Lysis_col Lysis prot 28.4 25 0.00063 16.1 0.9 22 1-23 1-22 (46)
216 PRK13893 conjugal transfer pro 28.3 42 0.0011 14.6 2.1 24 1-24 1-24 (193)
217 PRK09733 putative fimbrial pro 27.8 38 0.00096 14.9 1.8 15 1-15 2-16 (181)
218 TIGR00363 TIGR00363 lipoprotei 27.8 40 0.001 14.8 1.9 191 31-242 20-237 (264)
219 TIGR00580 mfd transcription-re 27.8 46 0.0012 14.4 3.1 143 123-285 719-879 (997)
220 TIGR03502 lipase_Pla1_cef extr 27.7 45 0.0012 14.4 2.2 29 1-30 1-29 (792)
221 pfam02401 LYTB LytB protein. T 27.5 46 0.0012 14.4 3.7 153 23-196 40-214 (280)
222 PRK00050 mraW S-adenosyl-methy 27.0 47 0.0012 14.3 4.1 104 51-168 46-156 (309)
223 PRK02145 consensus 26.8 47 0.0012 14.3 3.8 19 178-196 212-230 (257)
224 PRK05963 3-oxoacyl-(acyl carri 26.7 48 0.0012 14.3 3.9 70 231-308 217-287 (327)
225 TIGR02329 propionate_PrpR prop 26.7 35 0.00089 15.1 1.4 124 63-198 18-153 (658)
226 PRK11814 cysteine desulfurase 26.7 27 0.00068 15.9 0.8 177 54-254 31-233 (484)
227 CHL00085 ycf24 putative ABC tr 26.5 28 0.00072 15.7 1.0 184 47-254 22-234 (485)
228 KOG2951 consensus 26.4 48 0.0012 14.2 5.6 63 136-198 149-217 (279)
229 cd06309 PBP1_YtfQ_like Peripla 26.1 49 0.0012 14.2 6.4 29 171-199 215-243 (273)
230 pfam07996 T4SS Type IV secreti 25.9 39 0.00098 14.9 1.5 20 1-20 1-20 (217)
231 COG3636 Predicted transcriptio 25.8 44 0.0011 14.5 1.9 53 227-279 28-84 (100)
232 PRK06922 hypothetical protein; 25.8 50 0.0013 14.2 4.4 22 297-318 634-655 (679)
233 pfam02602 HEM4 Uroporphyrinoge 25.5 50 0.0013 14.1 5.7 58 142-199 111-175 (229)
234 PRK01909 pdxA 4-hydroxythreoni 24.9 31 0.0008 15.4 0.9 126 175-302 92-230 (329)
235 PRK07424 bifunctional sterol d 24.5 33 0.00084 15.3 1.0 57 122-183 159-217 (410)
236 PRK01742 tolB translocation pr 23.8 54 0.0014 13.9 4.9 58 1-71 3-64 (430)
237 pfam08671 SinI Anti-repressor 23.8 54 0.0014 13.9 2.6 26 234-266 2-27 (30)
238 pfam07659 DUF1599 Domain of Un 23.7 51 0.0013 14.1 1.8 18 233-250 43-60 (61)
239 TIGR03070 couple_hipB transcri 23.6 54 0.0014 13.9 2.0 27 251-277 22-48 (58)
240 TIGR00392 ileS isoleucyl-tRNA 23.6 54 0.0014 13.9 1.9 90 25-125 434-532 (938)
241 COG5510 Predicted small secret 23.6 54 0.0014 13.9 2.4 34 1-34 2-36 (44)
242 COG0603 Predicted PP-loop supe 23.3 55 0.0014 13.9 3.5 65 26-102 18-84 (222)
243 PRK09726 DNA-binding transcrip 23.2 54 0.0014 13.9 1.9 29 249-277 30-58 (88)
244 PRK02083 imidazole glycerol ph 23.1 56 0.0014 13.8 4.1 20 177-196 207-226 (253)
245 TIGR00543 isochor_syn isochori 23.1 56 0.0014 13.8 2.1 93 209-321 215-311 (371)
246 COG4594 FecB ABC-type Fe3+-cit 22.7 57 0.0014 13.8 3.8 23 1-23 3-25 (310)
247 COG5633 Predicted periplasmic 22.6 53 0.0014 14.0 1.7 46 1-49 1-51 (123)
248 COG1427 Predicted periplasmic 22.4 57 0.0015 13.8 8.3 146 78-238 25-183 (252)
249 PRK12696 flgH flagellar basal 22.3 58 0.0015 13.7 2.2 18 1-18 1-18 (238)
250 PRK05567 inositol-5'-monophosp 22.2 54 0.0014 13.9 1.7 49 176-229 340-388 (486)
251 pfam07437 YfaZ YfaZ precursor. 22.0 59 0.0015 13.7 3.6 130 1-145 1-136 (180)
252 PRK10449 heat-inducible protei 21.7 59 0.0015 13.7 4.9 10 1-10 1-10 (140)
253 pfam11131 PhrC_PhrF Rap-phr ex 21.4 29 0.00073 15.7 0.2 35 1-35 1-36 (37)
254 TIGR03525 GldK gliding motilit 21.3 60 0.0015 13.6 1.9 30 1-42 1-30 (449)
255 KOG3019 consensus 21.2 61 0.0016 13.6 2.5 18 239-256 219-236 (315)
256 TIGR01422 phosphonatase phosph 21.1 61 0.0016 13.6 2.8 57 189-260 117-174 (199)
257 PRK10765 nitroreductase A; Pro 20.8 26 0.00067 15.9 -0.1 13 25-37 3-15 (240)
258 COG3784 Uncharacterized protei 20.7 62 0.0016 13.5 2.0 32 1-35 3-34 (109)
259 PRK02621 consensus 20.6 62 0.0016 13.5 3.9 20 177-196 208-227 (254)
260 pfam10626 TraO Conjugative tra 20.6 37 0.00095 15.0 0.6 42 1-45 1-43 (193)
261 pfam07901 DUF1672 Protein of u 20.5 56 0.0014 13.8 1.5 17 226-242 205-221 (304)
262 PRK05298 excinuclease ABC subu 20.3 63 0.0016 13.5 3.6 38 159-196 461-502 (657)
No 1
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein; InterPro: IPR005768 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The later are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homolog proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute through the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped into eight families of clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homolog with catalytic activity. ; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space.
Probab=100.00 E-value=0 Score=529.04 Aligned_cols=288 Identities=28% Similarity=0.483 Sum_probs=274.1
Q ss_pred CCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCC----CEEEEEECCCCCCHHHHHCCCE
Q ss_conf 442168999857949998717898830688989880150999999999967982----2025998143100267743962
Q gi|254780170|r 22 TNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDP----SKIQYLPLNAKERFLALQSKQI 97 (342)
Q Consensus 22 a~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~----~kVe~v~~~~~~rf~aL~sG~v 97 (342)
..+++....+++|.|+||++++||||+++|++|+++|||||||++|+++|.+|+ .+++|++.+|+.|||+|++|||
T Consensus 15 ~~~a~~~a~~~~~~v~~gt~~~y~PF~~~~a~G~~~GFDvDl~~alc~~~~gD~GWdh~~c~~~~~~~~~liPsL~~k~~ 94 (333)
T TIGR01096 15 SSAATAAAAKEKGSVRIGTETAYPPFEFKDADGKLVGFDVDLANALCKEMKGDPGWDHAKCKFVEQAFDGLIPSLKAKKV 94 (333)
T ss_pred HHHCCHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCE
T ss_conf 86215688852880799865787986551889545632678999999984589996431488842756652025453806
Q ss_pred EEEEE-CCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCC-CCHHH-----------------------HC-CCCEEEE
Q ss_conf 79981-24325320110278435322344023463021134-75364-----------------------17-8620343
Q gi|254780170|r 98 DILSR-NTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGI-SSVSQ-----------------------LS-GASICVQ 151 (342)
Q Consensus 98 Dil~~-~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i-~s~~d-----------------------L~-G~~I~v~ 151 (342)
|++++ +||||++| ++.|+|+.|||+++++|||++++++ ++.++ |+ |++|||+
T Consensus 95 Dai~an~~~It~~R--~~~i~F~~~yy~~~~~f~v~~~~~~~~~~~~~E~~~Ld~~A~~~K~~~d~~~~~L~nG~~~gV~ 172 (333)
T TIGR01096 95 DAIMANAMSITDER--QKQIDFSDPYYATGAGFVVKKDSDLAKTLEDGENYSLDNQADAAKKEIDDVTKFLKNGKKVGVQ 172 (333)
T ss_pred EEEEECCCCCCHHH--HHHHCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 89972665546656--6321144300004430222248875431453303672000379899899899985275489862
Q ss_pred ECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECC
Q ss_conf 13426999999998629985078747989999998739602998250479999983678001002564442371010002
Q gi|254780170|r 152 AGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAII 231 (342)
Q Consensus 152 ~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr 231 (342)
.|||+|+++.++++.+++.++++.|++.+++..+|.+|||||+++|.+.|...+.+.+++.||.++++.++.|||||+.+
T Consensus 173 ~GTT~~~~~~~~~~~~Nl~v~~~~Y~~~~~~~~dL~~GR~Da~~~D~~~l~~~~~~~~~gkd~~~~g~~~~~~PLGP~~~ 252 (333)
T TIGR01096 173 SGTTHEQYLKDEFKPKNLGVDIVEYDSYDNANMDLKAGRIDAVLADASVLAEGFLKPPNGKDLKFVGPKVTDEPLGPVKY 252 (333)
T ss_pred CCCCHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCC
T ss_conf 68848999986244337426666408867999997579621774365888888737898886377283226889898555
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCC-CHHHCCCCHHHHHHHHHHCCCHHHHH
Q ss_conf 77757999988774433112123301520898862267177887623588765-03337998679999999718699987
Q gi|254780170|r 232 QGDTEWYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSN-IGEALGLTKDWTYRIIRHMGNYGEMF 310 (342)
Q Consensus 232 ~gD~~w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~-~g~~lgl~~~~~~~~i~~vGNYgei~ 310 (342)
.||.+|+|||+|+.||||.|||+||+..++|++.+ |.||+|+||||.| ++ +|+.|....|+|.+.|++.|+|.+||
T Consensus 253 FG~g~W~DiV~W~~YAL~~A~E~Gig~rk~de~~~-s~Np~i~r~lg~~--~Dt~G~eL~~~~n~Al~~~~adGtY~~i~ 329 (333)
T TIGR01096 253 FGDGYWFDIVRWSAYALVAAEEVGIGLRKVDEVKA-STNPEIKRLLGSE--GDTIGKELKAKFNKALKAIRADGTYQKIS 329 (333)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHC-CCCCCHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 78883001214466777634432125345588851-8883023220455--65121899999999999998658746888
Q ss_pred HHHC
Q ss_conf 8864
Q gi|254780170|r 311 DRNL 314 (342)
Q Consensus 311 ~rnl 314 (342)
++||
T Consensus 330 ~kwf 333 (333)
T TIGR01096 330 KKWF 333 (333)
T ss_pred HHCC
T ss_conf 6519
No 2
>PRK10797 glutamate and aspartate transporter subunit; Provisional
Probab=100.00 E-value=0 Score=407.56 Aligned_cols=225 Identities=20% Similarity=0.275 Sum_probs=210.4
Q ss_pred CCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCC----CCEEEEEECCCCCCHHHHHCCC
Q ss_conf 244216899985794999871789883068898988015099999999996798----2202599814310026774396
Q gi|254780170|r 21 STNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDD----PSKIQYLPLNAKERFLALQSKQ 96 (342)
Q Consensus 21 aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd----~~kVe~v~~~~~~rf~aL~sG~ 96 (342)
++.++||++|+++|+|+||++.++|||+|.|++|+++|||||+|++||+++..+ ..+|+|++++|++||++|++|+
T Consensus 27 ~a~~~tL~~Ik~~G~l~vG~~~~~pPf~~~d~~g~~vGfdvDla~~ia~~l~~~l~~~~~~v~~v~~~~~~rip~L~~gk 106 (302)
T PRK10797 27 PAAGSTLDKIAKNGVIVVGHRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLLQNGT 106 (302)
T ss_pred CCCCCHHHHHHHCCEEEEEECCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCC
T ss_conf 53227199998699899998999899716899998515417999999999987744677349999757888779997898
Q ss_pred EEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 27998124325320110278435322344023463021134753641786203431342699999999862998507874
Q gi|254780170|r 97 IDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVF 176 (342)
Q Consensus 97 vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~ 176 (342)
+|++|+++|+|++|+ +.|+||.|||+++++++||++++|++++||+||+|||++|||+|..+.++.....++++++.|
T Consensus 107 ~Di~~~~~t~T~eR~--k~vdFS~pY~~~~~~llv~k~s~Iks~~DL~GK~V~V~~GTt~e~~~~~~~~~~~~~~~iv~~ 184 (302)
T PRK10797 107 FDFECGSTTNNLERQ--KQAAFSDTIFVVGTRLLTKKGGDIKDFADLKGKAVVVTSGTTSEVLLNKLNEEQKMNMRIISA 184 (302)
T ss_pred CCEEEECCCCCHHHH--CCEEECCCCEECCEEEEEECCCCCCCHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 088973575697774--124214662771468999778866675660899799967873999999866750677237850
Q ss_pred CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 79899999987396029982504799999836780010025644423710100027775799998877443
Q gi|254780170|r 177 ERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYA 247 (342)
Q Consensus 177 ~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~a 247 (342)
+++.+++.+|.+||+||++.|.+.|++.....++|+.+.|+++.++.||||+++||||++|++.|+..+..
T Consensus 185 ~~~~~a~~~L~~GrvDA~~~D~~~l~~~~~~~~~~~~~~iv~~~~~~e~ygia~rKgd~~L~~~Vn~aL~~ 255 (302)
T PRK10797 185 KDHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWEIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIAQ 255 (302)
T ss_pred CCHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHH
T ss_conf 88899999998599509981229888999863699754993786777607999968999999999999999
No 3
>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed
Probab=100.00 E-value=0 Score=374.82 Aligned_cols=239 Identities=24% Similarity=0.307 Sum_probs=210.4
Q ss_pred HHHHHHHHHHHHHH--HHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECC-CCCEEEEHHHHHHHHHHHHCCCCCEE
Q ss_conf 13899999999999--9840124421689998579499987178988306889-89880150999999999967982202
Q gi|254780170|r 2 YKDFFVSILCLIIL--FFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKA-NGDWKGFDVDFCRALSSAIFDDPSKI 78 (342)
Q Consensus 2 ~K~~l~~~l~l~~~--~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~-~G~~~GfDVDl~raiAaal~gd~~kV 78 (342)
+|+++...+.++.+ +.+++++.+++|++|++||+|+||++.++|||+|.|+ +|+++|||||+|++||+.++|+..++
T Consensus 4 ~~~l~~~~~~~l~~~~~~~~~~a~~~~l~~I~~~G~L~vg~~~~~pPf~~~d~~~g~~~GfDvDla~~iAk~llg~~~~v 83 (259)
T PRK11917 4 RKSLLKLAVFALGACVAFSNANAAEGKLESIKSKGQLIVGVKNDVPHYALLDQATGEIKGFEIDVAKLLAKSILGDDKKI 83 (259)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHCCEEEEEECCCCCCCCEEECCCCCEEEEEHHHHHHHHHHHCCCCCEE
T ss_conf 79999999999999986345211144199998599899998789788620567999678887999999999965998569
Q ss_pred EEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHH
Q ss_conf 59981431002677439627998124325320110278435322344023463021134753641786203431342699
Q gi|254780170|r 79 QYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTEL 158 (342)
Q Consensus 79 e~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~ 158 (342)
||++++|.+|+|+|++|++|+++++||+|++| .+.++||.|||++++.++||+++++++++||+|++|||+.|||++.
T Consensus 84 ~~v~~~~~~~~p~L~~gkvD~i~~~~tiT~eR--~k~vdFS~PY~~~~~~ilv~k~~~i~~~~DL~gk~Vgv~~gst~~~ 161 (259)
T PRK11917 84 KLVAVNAKTRGPLLDNGSVDAVIATFTITPER--KRIYNFSEPYYQDAIGLLVLKEKNYKSLADMKGANIGVAQAATTKK 161 (259)
T ss_pred EEEEECHHHHHHHHHCCCEEEEEECCCCCCCH--HCCEEECCCEEEEEEEEEEECCCCCCCHHHHCCCCEEEEECCCHHH
T ss_conf 99970678776898779855998664767654--3057622476996559999899999998995898179992784699
Q ss_pred HHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHH
Q ss_conf 99999986299850787479899999987396029982504799999836780010025644423710100027775799
Q gi|254780170|r 159 TLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWY 238 (342)
Q Consensus 159 ~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~ 238 (342)
.+.+..+..++.++++.|++.++++.+|.+|||||++.|.+.+.+... ....++++.++.||+|+++|+||++|.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~d~~~~~~~~~-----~~~~~~~~~~~~~~~giavrKgd~~l~ 236 (259)
T PRK11917 162 AIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVD-----DKSEILPDSFEPQSYGIVTKKDDPAFA 236 (259)
T ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCEEEEECCHHHHHHHHH-----CCCCCCCCCCCCCEEEEEEECCCHHHH
T ss_conf 999988860885169964999999999984980299826999999986-----198016888875258999948998999
Q ss_pred HHHHHHHHH
Q ss_conf 998877443
Q gi|254780170|r 239 NIVSWTHYA 247 (342)
Q Consensus 239 d~V~W~~~a 247 (342)
+.|+..+..
T Consensus 237 ~~vn~~i~~ 245 (259)
T PRK11917 237 KYVDDFVKE 245 (259)
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 4
>PRK11260 cystine transporter subunit; Provisional
Probab=100.00 E-value=0 Score=343.06 Aligned_cols=238 Identities=19% Similarity=0.227 Sum_probs=206.0
Q ss_pred CHHHHHHHHHHHHHHHH--HHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEE
Q ss_conf 91389999999999998--4012442168999857949998717898830688989880150999999999967982202
Q gi|254780170|r 1 MYKDFFVSILCLIILFF--TSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKI 78 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~--~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kV 78 (342)
|.|+.++++++++++.. .++++++++|++|++||+|+||++.++|||+|.|++|+++|||||++++||+.++ .++
T Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~L~~I~~~G~L~Vg~~~~~pPf~~~d~~G~~~GfdvDl~~~ia~~lg---~~~ 80 (264)
T PRK11260 4 LGRQALMGVMAVALVAGMSVKSFADEGLLNKVKERGTLLVGLEGTYPPFSFQGEDGKLTGFEVEFAEALAKHLG---VKA 80 (264)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCEEEEEECCCCCCCEEECCCCCEEEEEHHHHHHHHHHHC---CCE
T ss_conf 67999999999999998357654342439999869989999778988936899999988871999999999849---956
Q ss_pred EEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCC--CCCCHHHHCCCCEEEEECCCH
Q ss_conf 599814310026774396279981243253201102784353223440234630211--347536417862034313426
Q gi|254780170|r 79 QYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKK--GISSVSQLSGASICVQAGTTT 156 (342)
Q Consensus 79 e~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~--~i~s~~dL~G~~I~v~~GTT~ 156 (342)
+|++++|++++++|++|++|++++++|+|++|+. .++||.|||+.++.++|++++ .|++++||+|++|||+.||+.
T Consensus 81 e~~~~~~~~~i~~L~~g~~Di~~~~~t~T~eR~~--~~~Fs~PY~~~~~~~~v~~~~~~~i~~~~dL~Gk~V~v~~gs~~ 158 (264)
T PRK11260 81 SLKPTKWDGMLASLDSKRIDVVINQVTISDERKK--KYDFSTPYTVSGIQALVKKGNEGTIKTAADLKGKKVGVGLGTNY 158 (264)
T ss_pred EEEECCHHHHHHHHHCCCCCEEECCCCCCHHHHH--HCCCCCCEEEEEEEEEEECCCCCCCCCHHHHCCCEEEEECCCHH
T ss_conf 9997888999999866994667257535888885--17767743774459999878976668978966871688569789
Q ss_pred HHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHH
Q ss_conf 99999999862998507874798999999873960299825047999998367800100256444237101000277757
Q gi|254780170|r 157 ELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTE 236 (342)
Q Consensus 157 e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~ 236 (342)
|..++ ++..+.+++.|++..+++++|.+||+||++.|...+..... .+|+...+.+++++.+|+|+++|++|++
T Consensus 159 ~~~l~----~~~~~~~i~~~~~~~~~~~~l~~G~vDa~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~iav~k~~~~ 232 (264)
T PRK11260 159 EEWLR----QNVQGVDVRTYDDDPTKYQDLRVGRIDAILVDRLAALDLVK--KTNDTLAVTGEAFSRQESGVALRKGNPD 232 (264)
T ss_pred HHHHH----HHCCCCCEEEECCHHHHHHHHHCCCCCEEEECHHHHHHHHH--HCCCCEEECCCCCCCCEEEEEEECCCHH
T ss_conf 99998----60889816863661899999875986799945999999998--6899789806876665089999899999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999887744331
Q gi|254780170|r 237 WYNIVSWTHYAMV 249 (342)
Q Consensus 237 w~d~V~W~~~ali 249 (342)
|.+.++..+..|.
T Consensus 233 L~~~in~~L~~l~ 245 (264)
T PRK11260 233 LLKAVNNAIAEMQ 245 (264)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999
No 5
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed
Probab=100.00 E-value=6.4e-43 Score=292.17 Aligned_cols=224 Identities=21% Similarity=0.219 Sum_probs=186.3
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 91389999999999998401244216899985794999871789883068898988015099999999996798220259
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQY 80 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~ 80 (342)
|||.+.+++++++++++.++.++ .++|+||++.++|||+|. ++|+++|||||++++||+.++ .++||
T Consensus 1 mk~~~~~~~~~~~~~~~~~~~a~---------~~~l~Vg~~~~~pPf~f~-~~g~~~GfdvDl~~~ia~~lg---~~~e~ 67 (247)
T PRK09495 1 MKSVLKVSLAALTLAFAVSSHAA---------DKELVVATDTAFVPFEFK-QGDKYVGFDVDLWAAIAKELK---LDYTL 67 (247)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHC---------CCEEEEEECCCCCCEEEC-CCCEEEEEHHHHHHHHHHHHC---CCEEE
T ss_conf 97799999999999998766514---------994999989987980576-799278829999999999969---94699
Q ss_pred EECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECC-CCCCCHHHHCCCCEEEEECCCHHHH
Q ss_conf 981431002677439627998124325320110278435322344023463021-1347536417862034313426999
Q gi|254780170|r 81 LPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKK-KGISSVSQLSGASICVQAGTTTELT 159 (342)
Q Consensus 81 v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~-~~i~s~~dL~G~~I~v~~GTT~e~~ 159 (342)
++++|++++++|++|++|++++++|+|++|+. .++||.|||.+++.++++++ +.|++++||+|++|||+.||+++..
T Consensus 68 ~~~~~~~~i~~l~~g~~D~~~~~~~~T~eR~~--~~~FS~py~~~~~~i~v~~~~~~i~~~~dL~Gk~v~v~~Gs~~~~~ 145 (247)
T PRK09495 68 KPMDFSGIIPALQTKNIDLALAGITITDERKK--AIDFSDGYYKSGLLVMVKANNNDIKSVKDLDGKVVAVKSGTGSVDY 145 (247)
T ss_pred EECCHHHHHHHHHCCCCCEEECCCCCCHHHHH--HCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCEEEEECCCHHHHH
T ss_conf 97788999999976995636466014789984--3334777077246999989997779824548988998469589999
Q ss_pred HHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHH
Q ss_conf 99999862998507874798999999873960299825047999998367800100256444237101000277757999
Q gi|254780170|r 160 LADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYN 239 (342)
Q Consensus 160 l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d 239 (342)
+ +......+++.|++.++++.+|.+||+||++.|...+.......+ ...+.+++++++.+++|+++++|++ +.+
T Consensus 146 ~----~~~~~~~~i~~~~~~~~~~~aL~~GrvDa~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ia~~k~~~-L~~ 219 (247)
T PRK09495 146 A----KANIKTKDLRQFPNIDNAYLELGTGRADAVLHDTPNILYFIKTAG-NGQFKAVGDSLEAQQYGIAFPKGSD-LRE 219 (247)
T ss_pred H----HHHCCCCCEEECCCHHHHHHHHHCCCEEEEEECHHHHHHHHHHCC-CCCEEEECCCCCCCEEEEEEECCHH-HHH
T ss_conf 9----963889866965988999998765873499956899999998489-9978994677776459999928829-999
Q ss_pred HHHHHH
Q ss_conf 988774
Q gi|254780170|r 240 IVSWTH 245 (342)
Q Consensus 240 ~V~W~~ 245 (342)
.++..+
T Consensus 220 ~in~aL 225 (247)
T PRK09495 220 KVNGAL 225 (247)
T ss_pred HHHHHH
T ss_conf 999999
No 6
>COG0834 HisJ ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-33 Score=231.90 Aligned_cols=221 Identities=27% Similarity=0.352 Sum_probs=181.1
Q ss_pred HHHHHHHCCEEEEEEECC-CCCCEEECCC-CCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEEC
Q ss_conf 689998579499987178-9883068898-98801509999999999679822025998143100267743962799812
Q gi|254780170|r 26 ILGDIKKRGFLKCGINTG-LVGFAEVKAN-GDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRN 103 (342)
Q Consensus 26 tLd~Vk~rG~L~vGv~~~-~ppfs~~d~~-G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~ 103 (342)
.++.++.+|.++||+... .|||+|.+.. |+++|||||+|+++|+.++++. ++++++.+|..++++|++|++|+++++
T Consensus 26 ~~~~~~~~~~~~v~~~~~~~~p~~~~~~~~~~~~G~dvdl~~~ia~~l~~~~-~~~~~~~~~~~~~~~l~~g~~D~~~~~ 104 (275)
T COG0834 26 LLDKIKARGKLRVGTEATYAPPFEFLDAKGGKLVGFDVDLAKAIAKRLGGDK-KVEFVPVAWDGLIPALKAGKVDIIIAG 104 (275)
T ss_pred HHHHHHHCCEEEEEECCCCCCCCEEECCCCCEEEEEHHHHHHHHHHHHCCCC-CEEEEECCHHHHHHHHHCCCCCEEEEC
T ss_conf 7766644775999972688898410238887067652999999999846774-248850688776389877998889856
Q ss_pred CCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCC--CCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHH
Q ss_conf 432532011027843532234402346302113--475364178620343134269999999986299850787479899
Q gi|254780170|r 104 TDWTLLREISLGLAFRPITYFDGQGFIMHKKKG--ISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEE 181 (342)
Q Consensus 104 ~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~--i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~ 181 (342)
+++|++|. ..++|+.||+..++.+++++++. +++.+||+|++|||+.||+ .....+........+++.|++..+
T Consensus 105 ~~~t~~r~--~~~~fs~py~~~~~~~~~~~~~~~~~~~~~DL~gk~v~v~~gt~--~~~~~~~~~~~~~~~~~~~~~~~~ 180 (275)
T COG0834 105 MTITPERK--KKVDFSDPYYYSGQVLLVKKDSDIGIKSLEDLKGKKVGVQLGTT--DEAEEKAKKPGPNAKIVAYDSNAE 180 (275)
T ss_pred CCCCHHHH--HCCCCCCCEEECCEEEEEECCCCCCCCCHHHHCCCEEEEECCCH--HHHHHHHHHCCCCCEEEECCCHHH
T ss_conf 73687775--20056777365465899976885455898895897699966845--888877640467744998188899
Q ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCC-CCEEEECCCCC-HHHHHHHHHHHHHHHHH
Q ss_conf 999987396029982504799999836780010025644423-71010002777-57999988774433112
Q gi|254780170|r 182 IDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISK-SPLAPAIIQGD-TEWYNIVSWTHYAMVTA 251 (342)
Q Consensus 182 a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~isk-EPlg~avr~gD-~~w~d~V~W~~~ali~A 251 (342)
++++|.+||+||++.|.+.+........+++...+....... +|+++++++++ +++++.++..+..+..-
T Consensus 181 ~~~al~~Gr~Da~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~n~~l~~l~~~ 252 (275)
T COG0834 181 ALLALKNGRADAVVSDSAVLAGLKLLKKNPGLYVLLVFPGLSVEYLGIALRKGDDPELLEAVNKALKELKAD 252 (275)
T ss_pred HHHHHHCCCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHC
T ss_conf 999998499889970688876666530155653211455665432000124685599999999999999819
No 7
>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions. PBPs have two cell-membrane translocation functions: bind substrate, and interact with the membrane bound complex. A diverse group of periplasmic transport receptors for lysine/arginine/ornithine (LAO), glutamine, histidine, sulfate, phosphate, molybdate, and methanol are included in the PBPb CD.
Probab=100.00 E-value=1.2e-33 Score=233.55 Aligned_cols=207 Identities=26% Similarity=0.307 Sum_probs=179.0
Q ss_pred EEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCC
Q ss_conf 99987178988306889898801509999999999679822025998143100267743962799812432532011027
Q gi|254780170|r 36 LKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLG 115 (342)
Q Consensus 36 L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~ 115 (342)
|+||++.++|||+|.|++|+++||++|+++++|+.++ .+++|++++|+.++.+|++|++|++++++++|++|+. .
T Consensus 1 l~Vg~~~~~pP~~~~~~~G~~~G~~~dl~~~i~~~lg---~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~R~~--~ 75 (218)
T cd00134 1 LTVGTAGTYPPFSFRDANGELTGFDVDLAKAIAKELG---VKVKFVEVDWDGLITALKSGKVDLIAAGMTITPERAK--Q 75 (218)
T ss_pred CEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHHHHC---CCEEEEECCHHHHHHHHHCCCCCEEEEEECCCHHHHC--C
T ss_conf 9899489989906899999788839999999999969---9669997588999999857997768885025856614--1
Q ss_pred CCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEE
Q ss_conf 84353223440234630211347536417862034313426999999998629985078747989999998739602998
Q gi|254780170|r 116 LAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYT 195 (342)
Q Consensus 116 v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~ 195 (342)
++|+.||+..+..+++++++.+++++||+|++|||..|++.+..+.+. ....+++.|++.++++.+|.+||+|+++
T Consensus 76 ~~fs~p~~~~~~~~~~~~~~~~~~~~dl~g~~i~v~~g~~~~~~l~~~----~~~~~~~~~~~~~~~~~~l~~G~vD~~v 151 (218)
T cd00134 76 VDFSDPYYKSGQVILVKKGSPIKSVKDLKGKKVAVQKGSTAEKYLKKA----LPEAKVVSYDDNAEALAALENGRADAVI 151 (218)
T ss_pred CCCCCCEECCCEEEEEECCCCCCCHHHHCCCEEEEECCCHHHHHHHHH----HCCCEEEEECCHHHHHHHHHCCCCEEEE
T ss_conf 455764441570799986899999899779626795898899999973----1575499969999999999859946999
Q ss_pred ECCHHHHHHHHHCCCCHHHCCCCCCCCC--CCEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 2504799999836780010025644423--710100027775799998877443311212
Q gi|254780170|r 196 GDISALYALKLTNDRPSEHVILPDIISK--SPLAPAIIQGDTEWYNIVSWTHYAMVTAEE 253 (342)
Q Consensus 196 ~D~s~La~~~~~~~~p~~~~il~e~isk--EPlg~avr~gD~~w~d~V~W~~~ali~Aee 253 (342)
.|...+...... .+.++.+++..+.. .+++++++++++++.+.++..+..|..-.+
T Consensus 152 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~n~~l~~l~~~G~ 209 (218)
T cd00134 152 VDEIALAALLKK--HPPELKIVGPSIDLEPLGFGVAVGKDNKELLDAVNKALKELRADGE 209 (218)
T ss_pred ECHHHHHHHHHH--CCCCCEEECCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCHH
T ss_conf 769999999986--7998199635667673489999749999999999999999986829
No 8
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins. bacterial proteins, eukaryotic ones are in PBPe
Probab=100.00 E-value=3.4e-32 Score=224.26 Aligned_cols=211 Identities=26% Similarity=0.338 Sum_probs=184.2
Q ss_pred EEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCC
Q ss_conf 49998717898830688989880150999999999967982202599814310026774396279981243253201102
Q gi|254780170|r 35 FLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISL 114 (342)
Q Consensus 35 ~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~ 114 (342)
+||||+++++|||+|.|++|+++||++|+++++++.++ .+++|+.++|..++.+|++|++|+++..+++|++|+.
T Consensus 1 ~i~v~~~~~~pP~~~~~~~G~~~G~~~Dil~~~~~~lg---~~i~~~~~~~~r~~~~l~~g~~D~~~~~~~~~~~r~~-- 75 (219)
T smart00062 1 TLRVGTNGDYPPFSFADEDGELTGFDVDLAKAIAKELG---LKVEFVEVSFDNLLTALKSGKIDVVAAGMTITPERAK-- 75 (219)
T ss_pred CEEEEECCCCCCEEEECCCCCEEEEHHHHHHHHHHHHC---CCEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHHHH--
T ss_conf 98999789989927999999778829999999999979---9679998478999999975897705311357867750--
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEE
Q ss_conf 78435322344023463021134753641786203431342699999999862998507874798999999873960299
Q gi|254780170|r 115 GLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAY 194 (342)
Q Consensus 115 ~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~ 194 (342)
.+.|+.||+.....+++++++.+++++||+|++||+..|+..+..+ .......+++.+++.++++.+|.+||+|++
T Consensus 76 ~~~~s~p~~~~~~~~~~~~~~~~~~~~dL~g~~i~~~~g~~~~~~l----~~~~~~~~~~~~~~~~~~~~~l~~g~vD~~ 151 (219)
T smart00062 76 QVDFSDPYYKSGQVILVRKDSPIKSLEDLKGKKVAVVAGTTGEELL----KKLYPEAKIVSYDSQAEALAALKAGRADAA 151 (219)
T ss_pred CCCCCCCEECCCEEEEEECCCCCCCHHHHCCCEEEEECCCHHHHHH----HHHCCCCEEEEECCHHHHHHHHHCCCEEEE
T ss_conf 0222455002444799965899799799679779995798799999----972878528985999999999983987999
Q ss_pred EECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 825047999998367800100256444237101000277757999988774433112123
Q gi|254780170|r 195 TGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEEL 254 (342)
Q Consensus 195 ~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~ 254 (342)
+.|...+.....+.+.++...+.+...+.+|+++++++++++|.+..+..+..|.+-.++
T Consensus 152 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~n~~l~~l~~~G~l 211 (219)
T smart00062 152 VADAPALAALVKQHGLPELKIVGDPLDTPEGYAFAVRKGDPELLDKINKALKELKADGTL 211 (219)
T ss_pred EECHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCHH
T ss_conf 977999999998489998378346777764199999599999999999999999968099
No 9
>pfam00497 SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3.
Probab=100.00 E-value=4.9e-31 Score=216.91 Aligned_cols=205 Identities=25% Similarity=0.374 Sum_probs=175.3
Q ss_pred EEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCC
Q ss_conf 99987178988306889898801509999999999679822025998143100267743962799812432532011027
Q gi|254780170|r 36 LKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLG 115 (342)
Q Consensus 36 L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~ 115 (342)
||||++.++|||+|.|++|+++||++|+.++++..++ .+++|+.++|+.++.+|++|++|++++.+++|++|+. .
T Consensus 1 l~v~~~~~~pP~~~~~~~G~~~G~~~dil~~i~~~lg---~~~~~~~~p~~~~~~~l~~g~~D~~~~~~~~t~~R~~--~ 75 (224)
T pfam00497 1 LRVGTDADYPPFSYLDEDGKLVGFDVDLAKAIAKRLG---VKVEFVPVSWDGLIPALQSGKIDVIIAGMTITPERKK--K 75 (224)
T ss_pred CEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHHHHC---CCEEEEECCHHHHHHHHHCCCCCEEECCCCCCHHHHH--H
T ss_conf 9899589989915999999788829999999999979---9679998588999999976998766136778855510--2
Q ss_pred CCCCCCCCCCCEEEEEECCC-----CCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCC
Q ss_conf 84353223440234630211-----3475364178620343134269999999986299850787479899999987396
Q gi|254780170|r 116 LAFRPITYFDGQGFIMHKKK-----GISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHR 190 (342)
Q Consensus 116 v~Fs~~~~~dgq~~lVrk~~-----~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr 190 (342)
++|+.||+.....+++++++ .+++++||+|++||+..|+.++..+.+.. ....+++.+++..+++..|.+||
T Consensus 76 ~~~s~p~~~~~~~~~~~~~~~~~~~~~~~~~dL~~~~I~v~~g~~~~~~l~~~~---~~~~~i~~~~~~~~~l~~L~~gr 152 (224)
T pfam00497 76 VDFSDPYYYSGQVLVVRKDSPPKIKSIKDLADLKGKKVGVQKGTTQEDLLKELA---PKGAEIVLYDDQAEALQALAAGR 152 (224)
T ss_pred HCCCCCEEECCEEEEEECCCCCCCCCCCCHHHHCCCEEEEECCCHHHHHHHHHC---CCCCEEEEECCHHHHHHHHHCCC
T ss_conf 125753440471799998987654565898997797799968977999998606---24451699542788888987497
Q ss_pred EEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 029982504799999836780010025644423710100027775799998877443311
Q gi|254780170|r 191 CDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVT 250 (342)
Q Consensus 191 ~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~ 250 (342)
||+++.|...+.....+. +.+..+++..++.+|++++++++++++.+.++-.+..|.+
T Consensus 153 ~D~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~n~~l~~l~~ 210 (224)
T pfam00497 153 VDAVVADSPVAAYLIKKN--PGLNLVVGEPLSGEPYGIAVRKGDPELLAAVNKALAELKA 210 (224)
T ss_pred EEEEEECHHHHHHHHHHC--CCCEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf 689995799999999868--9972994367776149999979999999999999999996
No 10
>PRK10859 putative transglycosylase; Provisional
Probab=99.94 E-value=2.1e-24 Score=174.90 Aligned_cols=229 Identities=15% Similarity=0.146 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHHHH--HC---CCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEE
Q ss_conf 899999999999984--01---2442168999857949998717898830688989880150999999999967982202
Q gi|254780170|r 4 DFFVSILCLIILFFT--SF---STNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKI 78 (342)
Q Consensus 4 ~~l~~~l~l~~~~~~--~~---aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kV 78 (342)
-+++.++++++.... ++ ......|++|++||+|+|++..+. -+|...+|++.||+-||+++.|..++ .++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~I~~rG~LrV~T~~sp--ttYy~~~~~~~GFEYELak~FA~~LG---V~L 82 (507)
T PRK10859 8 YLFIGIVTLLLAAALWPSIPWFGKQENQIAAIQARGELRVSTIHSP--LTYSTINGKPFGLDYELAKQFADYLG---VKL 82 (507)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCEEEEEEECCC--CEEEECCCCCCCHHHHHHHHHHHHCC---CEE
T ss_conf 1289999999999972058889984747999997896899997589--65994199647799999999999809---917
Q ss_pred EEEEC-CCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCC-CCCHHHHCCCCEEEEECCCH
Q ss_conf 59981-43100267743962799812432532011027843532234402346302113-47536417862034313426
Q gi|254780170|r 79 QYLPL-NAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKG-ISSVSQLSGASICVQAGTTT 156 (342)
Q Consensus 79 e~v~~-~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~-i~s~~dL~G~~I~v~~GTT~ 156 (342)
++++. +.++.|++|++|+.|++++++|+|.+| ...+.|+++|+...|.++.|+++. +++++||.|++|.|.+||++
T Consensus 83 ~i~~~~~~~el~~~L~~G~~DiaAAgLt~t~~R--~~~~~~~p~Y~~v~q~LVyr~g~~rP~~l~DL~G~~I~V~~gSsy 160 (507)
T PRK10859 83 KVTVRQNISQLFDDLDNGNADLLAAGLVYNSER--VKNYQPGPTYYSVSQQLVYRVGQYRPRTLGDLTGEQLTVAPGHVV 160 (507)
T ss_pred EEEECCCHHHHHHHHHCCCCCEEECCCCCCHHH--HHCCCCCCCCCCEEEEEEEECCCCCCCCHHHCCCCEEEECCCCHH
T ss_conf 999749999999998679988895578778536--740435686503003999958998988977837986998179759
Q ss_pred HHHHHHHHHHCCCCCC--EEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCC
Q ss_conf 9999999986299850--78747989999998739602998250479999983678001002564442371010002777
Q gi|254780170|r 157 ELTLADYFKAHNMKYH--PIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGD 234 (342)
Q Consensus 157 e~~l~~~~~~~~~~~~--~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD 234 (342)
+..|...-+...+..+ ...--+.++.+..+.+|++|.-+.|...+...+.-.|+= .+--+.-..+|++.++|+++
T Consensus 161 ~e~L~~Lk~~~~P~L~w~~~~~~~teeLL~~V~~g~IdyTVaDS~~~~l~qr~~P~L---~vaf~l~~~~~iaWa~~k~~ 237 (507)
T PRK10859 161 VNDLQTLKETKFPELSWKVDDKKGSAELLEQVIEGKLDYTIADSVAISLFQRVHPEL---AVALDVTDEQPVTWFSPLDD 237 (507)
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCH---HCCCCCCCCCCEEEEECCCC
T ss_conf 999999885348971599558999999999997598776885548899877648440---12245688751378845899
Q ss_pred HH-HHHHHH
Q ss_conf 57-999988
Q gi|254780170|r 235 TE-WYNIVS 242 (342)
Q Consensus 235 ~~-w~d~V~ 242 (342)
++ ..+.++
T Consensus 238 d~sL~~al~ 246 (507)
T PRK10859 238 DNTLSAALL 246 (507)
T ss_pred CHHHHHHHH
T ss_conf 789999999
No 11
>TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein; InterPro: IPR014337 Members of this entry are the extracellular solute-binding proteins of ABC transporters and they closely resemble amino acid transporters. The member from Sinorhizobium meliloti (Rhizobium meliloti) is involved in ectoine uptake, both for osmoprotection and for catabolism. All other members of the seed alignment are found associated with ectoine catabolic genes..
Probab=99.94 E-value=8.7e-26 Score=183.65 Aligned_cols=245 Identities=18% Similarity=0.236 Sum_probs=196.9
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCH
Q ss_conf 99999998401244216899985794999871789883068898988015099999999996798220259981431002
Q gi|254780170|r 10 LCLIILFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERF 89 (342)
Q Consensus 10 l~l~~~~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf 89 (342)
+++++.+.+..++++.|||++|+-|++|+|+-.. +||+|...||+-+|..-|++++|=+.||- ..|.++-..|-..|
T Consensus 10 al~aia~~~~~aa~a~~LeelKeQG~~Ria~ANE-~Pf~y~g~DGkv~G~~PdvA~aifK~lGi--~dVn~~~te~G~lI 86 (285)
T TIGR02995 10 ALAAIAAVAVAAADALTLEELKEQGFVRIAIANE-VPFAYVGADGKVAGAAPDVARAIFKRLGI--KDVNASVTEYGALI 86 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCC-CCCCCCCCCCCCCCCCHHHHHHHHHHCCC--EEEEEEECCCCCCC
T ss_conf 9999998757547552157552353047740067-86400268853136855789999985481--10000035640314
Q ss_pred HHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCC--CCCCHHHHC---CCCEEEEECCCHHHHHHHHH
Q ss_conf 6774396279981243253201102784353223440234630211--347536417---86203431342699999999
Q gi|254780170|r 90 LALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKK--GISSVSQLS---GASICVQAGTTTELTLADYF 164 (342)
Q Consensus 90 ~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~--~i~s~~dL~---G~~I~v~~GTT~e~~l~~~~ 164 (342)
|.|++|++|.+.+++-++++| =..|.|+.|.|.++.+|+|+|+. +.+|.+|.. ..||++..|++.++ |.
T Consensus 87 PGL~AgRfDaiaAg~~i~PeR--CkqVaft~P~~~~~eallvkKGNPk~L~sY~DiAknP~~K~a~~~G~~e~~----~a 160 (285)
T TIGR02995 87 PGLKAGRFDAIAAGLFIKPER--CKQVAFTEPILSLAEALLVKKGNPKELKSYKDIAKNPEVKVAVVAGAVEVK----YA 160 (285)
T ss_pred CCCCCCHHHHHHHCCCCCHHH--HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCEEEECCCCHHHH----HH
T ss_conf 541010256886115788566--646440688644755211258788887752020068231276124723789----99
Q ss_pred HHCCCC-CCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC---CCCCCCCE-----EEECCCCCH
Q ss_conf 862998-507874798999999873960299825047999998367800100256---44423710-----100027775
Q gi|254780170|r 165 KAHNMK-YHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILP---DIISKSPL-----APAIIQGDT 235 (342)
Q Consensus 165 ~~~~~~-~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~---e~iskEPl-----g~avr~gD~ 235 (342)
+..|.+ -+++.+++....++++++||+|+++.-.-.+-.+..+..+|+=-.+-| ..+.-.|- |.|+|++|.
T Consensus 161 r~~GVk~eqi~~vPd~~~~l~~vq~~RaDay~~t~Lt~~~La~K~gd~nVE~~~pfvdPvvkdaPv~i~ygg~AFRpeDk 240 (285)
T TIGR02995 161 REAGVKEEQIVVVPDTASALKAVQDKRADAYAATELTVKDLAKKAGDANVEVLAPFVDPVVKDAPVRINYGGLAFRPEDK 240 (285)
T ss_pred HHCCCCCCEEEEECCCHHHHHHHHHHCCCEECCCCCCHHHHHHHCCCCCCEECCCCCCCCCCCCCCEECCCCCCCCCCCH
T ss_conf 86589866078824871678887740342200332347889853389762000432153105887341167201166667
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HCCHHHHHH
Q ss_conf 7999988774433112123-------301520898
Q gi|254780170|r 236 EWYNIVSWTHYAMVTAEEL-------GITQKNINQ 263 (342)
Q Consensus 236 ~w~d~V~W~~~ali~Aee~-------git~~nv~~ 263 (342)
++||.++--+.-+-..||+ |.+.+|+..
T Consensus 241 eLRDafn~~L~k~~~s~e~~Ki~apyGfs~~~~~~ 275 (285)
T TIGR02995 241 ELRDAFNVELAKLKESDEFKKIVAPYGFSKKALAA 275 (285)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHH
T ss_conf 77879989999862465401122136888889987
No 12
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.90 E-value=1.3e-21 Score=157.22 Aligned_cols=217 Identities=16% Similarity=0.082 Sum_probs=166.1
Q ss_pred HHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEE-CCCCCCHHHHHCCCEEEEEECCCCC
Q ss_conf 998579499987178988306889898801509999999999679822025998-1431002677439627998124325
Q gi|254780170|r 29 DIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLP-LNAKERFLALQSKQIDILSRNTDWT 107 (342)
Q Consensus 29 ~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~-~~~~~rf~aL~sG~vDil~~~~T~T 107 (342)
=+++.-++++++++++|||+|.|++|++.||.+|+.+.|....| .++++++ -+|.+....|++|++|++ ..++.|
T Consensus 297 WL~~hP~irv~~~~~~aP~sf~D~~G~~~Gi~aD~L~lIs~rtG---L~Fe~v~~~~~~~~~~~l~~g~~D~l-~~~~~s 372 (1197)
T PRK09959 297 WIKQHPDLKVLENPYSPPYSMTDENGSVRGVMGDILNIITLQTG---LNFSPITVSHNIHAGTQLNPGGWDIL-PGAIYS 372 (1197)
T ss_pred HHHHCCCEEEEECCCCCCEEEECCCCCCCCCHHHHHHHHHHHHC---CEEEEEECCCHHHHHHHHHCCCCHHC-CCCCCC
T ss_conf 99978975997179989945788899764327999999999879---66899836987999999876981220-323578
Q ss_pred CCCHHCCCCCCCCCCCCCCEEEEEECCC-CCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHH
Q ss_conf 3201102784353223440234630211-347536417862034313426999999998629985078747989999998
Q gi|254780170|r 108 LLREISLGLAFRPITYFDGQGFIMHKKK-GISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAY 186 (342)
Q Consensus 108 ~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~-~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al 186 (342)
.+|+ ..+.|+.||....-.+++|++. ...++. .|++|++..|...+ ++++...++++++.+++..+++.++
T Consensus 373 ~~r~--~~l~fT~py~~~p~ViV~r~~~~~~~~l~--~gkrvai~~~~~~~----~~l~~~yP~i~~v~v~s~~~al~~v 444 (1197)
T PRK09959 373 EDRE--NNVLFAEAFITTPYVFVMQKAPDSEQTLK--KGMKVAIPYYYELH----SQLKEMYPEVEWIKVDNASAAFHKV 444 (1197)
T ss_pred CCCC--CCCEECCCCCCCCEEEEEECCCCCCCCHH--CCCEEEECCCCCHH----HHHHHHCCCCEEEEECCHHHHHHHH
T ss_conf 5443--46554132356875999963786301142--19889991785068----9999868983499809999999999
Q ss_pred HCCCEEEEEECCHHHHHHHHHCCCCHHHCCC-CCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 7396029982504799999836780010025-64442371010002777579999887744331121233015
Q gi|254780170|r 187 RAHRCDAYTGDISALYALKLTNDRPSEHVIL-PDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEELGITQ 258 (342)
Q Consensus 187 ~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il-~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~git~ 258 (342)
.+|++||++.....-.....+ --++..++. -......+++++|+++.++...|.+-++.++=..|-..|.+
T Consensus 445 ~~G~aDa~v~~l~~a~y~i~~-~~~~~L~~~~~~~~~~~~lafaV~~d~peL~sILnKaL~sIpp~E~~~I~~ 516 (1197)
T PRK09959 445 KEGELDALVATQLNSRYMIDH-YYPNELYHFLIPGVPNASLSFAFPRGEPELKDIINKALNAIPPSEVLRLTE 516 (1197)
T ss_pred HCCCCCEEEEHHHHHHHHHHH-HCCCCCEEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 778876674244778999987-456650487415877632699987998899999999998399999999998
No 13
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.84 E-value=1.9e-18 Score=137.13 Aligned_cols=246 Identities=12% Similarity=0.072 Sum_probs=180.5
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCC----------------------HHHHHHHHCCEEEEEE-ECCCCCCEEECCCCCEE
Q ss_conf 913899999999999984012442----------------------1689998579499987-17898830688989880
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNA----------------------SILGDIKKRGFLKCGI-NTGLVGFAEVKANGDWK 57 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a----------------------~tLd~Vk~rG~L~vGv-~~~~ppfs~~d~~G~~~ 57 (342)
||+-.+..++|..+.+....++.. +-+.=.+.|.+|++|+ .+++|||.+.++.+.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~WL~~~~~l~vgv~~pd~~Pf~~~~~~~~ye 80 (1197)
T PRK09959 1 MKFLPYIFLLCCGLWSTISFADEDYIEYRGISSNNRVTLDPLRLSNKELRWLASKKNLVIAVHKSQTATLLHTDSQQRVR 80 (1197)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCEEEECCCCCCC
T ss_conf 96421699999888756766531044122456887132457789979999997388589971068899967727998646
Q ss_pred EEHHHHHHHHHHHHCCCCCEEEEEE-CCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 1509999999999679822025998-143100267743962799812432532011027843532234402346302113
Q gi|254780170|r 58 GFDVDFCRALSSAIFDDPSKIQYLP-LNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKG 136 (342)
Q Consensus 58 GfDVDl~raiAaal~gd~~kVe~v~-~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~ 136 (342)
|+..|+..-|+.+++ .+|+.+. -++..-+.||++|+||++.+..+-+..+ ..++.++.||+.+-..++++....
T Consensus 81 GI~ADYl~li~~~L~---~~i~v~~y~~r~~al~AL~~GeIDl~~~~~~~~~~~--~~~~~~s~p~~~~~p~~v~~~~~~ 155 (1197)
T PRK09959 81 GINADYLNLLKRALN---IKLTLREYADHQKAMDALEEGEVDIVLSHLVASPPL--NDDIAATKPLIITFPALVTTLHDS 155 (1197)
T ss_pred CCCHHHHHHHHHHHC---CCEEEEECCCHHHHHHHHHCCCCCEECCCCCCCCCC--CCCCCCCCCCCCCCCEEEEECCCC
T ss_conf 847999999999868---987999569999999999759975634544457642--346533685323675589973333
Q ss_pred CCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCC
Q ss_conf 47536417862034313426999999998629985078747989999998739602998250479999983678001002
Q gi|254780170|r 137 ISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVI 216 (342)
Q Consensus 137 i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~i 216 (342)
.....++.+.+|+...+.-... .+.+..++.+++.|++..+++.|+..|++|+|.+|...-.....+.. .....+
T Consensus 156 ~~~~~~~~~~~va~v~~y~~~~----~i~~~yP~a~i~~~~s~~~Al~AVa~G~aD~~igd~~s~~~li~~~~-~~~l~~ 230 (1197)
T PRK09959 156 MRPLTSSKPVNIARVANYPPDE----VIHQSFPKATIISFTNLYQALASVSAGQNDYFIGSNIITSSMISRYF-THSLNV 230 (1197)
T ss_pred CCCCCCCCCEEEEEECCCCCHH----HHHHHCCCCEEEECCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHHC-CCCEEE
T ss_conf 5876567752799957889879----99985996669966899999999977998889602999999997440-268035
Q ss_pred CCCCCCCCCE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 5644423710---10002777579999887744331121233015
Q gi|254780170|r 217 LPDIISKSPL---APAIIQGDTEWYNIVSWTHYAMVTAEELGITQ 258 (342)
Q Consensus 217 l~e~iskEPl---g~avr~gD~~w~d~V~W~~~ali~Aee~git~ 258 (342)
. .+..+|. ..++|+++..+.++++-++.++-..+..-|-+
T Consensus 231 ~--~~~~~~~~~~~f~~~~~~~~L~~~in~~L~~i~~~~~~~i~~ 273 (1197)
T PRK09959 231 V--KYYNSPRQYNFFLTRKESVILNEVLNRFVDALTNEVRYEVSQ 273 (1197)
T ss_pred E--ECCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 2--124577644157878875789999999998379667999997
No 14
>COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein [Cell envelope biogenesis, outer membrane]
Probab=99.74 E-value=2.8e-16 Score=123.41 Aligned_cols=218 Identities=17% Similarity=0.182 Sum_probs=160.5
Q ss_pred CHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCC-CCCHHHHHCCCEEEEEE
Q ss_conf 21689998579499987178988306889898801509999999999679822025998143-10026774396279981
Q gi|254780170|r 24 ASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNA-KERFLALQSKQIDILSR 102 (342)
Q Consensus 24 a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~-~~rf~aL~sG~vDil~~ 102 (342)
..-|+.|++||+|+|++... |.+|--.+|.++|||.+++|++|.-++ .+.+.+|.+- ++.|++|++|++|++++
T Consensus 13 e~~l~~Iq~rGvLrV~tins--p~sy~~~~~~p~G~eYelak~Fa~yLg---V~Lki~~~~n~dqLf~aL~ng~~DL~Aa 87 (473)
T COG4623 13 ENDLAAIQARGVLRVSTINS--PLSYFEDKGGPTGLEYELAKAFADYLG---VKLKIIPADNIDQLFDALDNGNADLAAA 87 (473)
T ss_pred CCHHHHHHHCCEEEEEEECC--CCCEECCCCCCCCHHHHHHHHHHHHHC---CEEEEEECCCHHHHHHHHHCCCCCEECC
T ss_conf 01289998668079984058--650000379865355999999999859---7689986677888999985799332426
Q ss_pred CCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCC-CCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCC--CCEEEECCH
Q ss_conf 243253201102784353223440234630211-34753641786203431342699999999862998--507874798
Q gi|254780170|r 103 NTDWTLLREISLGLAFRPITYFDGQGFIMHKKK-GISSVSQLSGASICVQAGTTTELTLADYFKAHNMK--YHPIVFERV 179 (342)
Q Consensus 103 ~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~-~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~--~~~v~~~~~ 179 (342)
+.+...+| ...+.-+++||.-.|.++-|++. -.+++++|.|++|-+..|+....+++..-+...+. ++.-.--+.
T Consensus 88 gl~~~~~~--l~~~~~gP~y~svs~qlVyRkG~~Rp~~l~~L~g~~i~v~~gs~~~~~l~~lk~~kyP~l~~k~d~~~~~ 165 (473)
T COG4623 88 GLLYNSER--LKNFQPGPTYYSVSQQLVYRKGQYRPRSLGQLKGRQITVAKGSAHVEDLKLLKETKYPELIWKVDDKLGV 165 (473)
T ss_pred CCCCCHHH--HCCCCCCCCEECCCHHHHHHCCCCCCCCHHHCCCCEEECCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCH
T ss_conf 56679667--4046788720022588876528878788887367556406996888999999873163443020221269
Q ss_pred HHHHHHHHCCCEEEEEECCHHHHHHHHHCCCC-HHHCCCCCCCCCCCEEEECCCCCH-HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999987396029982504799999836780-010025644423710100027775-79999887744331121233
Q gi|254780170|r 180 EEIDAAYRAHRCDAYTGDISALYALKLTNDRP-SEHVILPDIISKSPLAPAIIQGDT-EWYNIVSWTHYAMVTAEELG 255 (342)
Q Consensus 180 ~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p-~~~~il~e~iskEPlg~avr~gD~-~w~d~V~W~~~ali~Aee~g 255 (342)
++.+..+..|.+|-.+.|...++......|+- -++.+..+ .|++..+|.+|+ .....+. .=|-.+.|-|
T Consensus 166 ~dLle~v~~Gkldytiads~~is~~q~i~P~laVafd~tde----~~v~Wy~~~~dd~tL~a~ll---~F~~~~~e~g 236 (473)
T COG4623 166 EDLLEMVAEGKLDYTIADSVEISLFQRVHPELAVAFDLTDE----QPVAWYLPRDDDSTLSAALL---DFLNEAKEDG 236 (473)
T ss_pred HHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCEEEEECCCC----CCCEEECCCCCHHHHHHHHH---HHHHHHHCCH
T ss_conf 99999996477661551618889898857222132201356----67346605896688999999---9998730520
No 15
>PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional
Probab=99.66 E-value=1.5e-14 Score=112.47 Aligned_cols=182 Identities=18% Similarity=0.222 Sum_probs=121.7
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 91389999999999998401244216899985794999871789883068898988015099999999996798220259
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQY 80 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~ 80 (342)
|+|-+..++.+++.++++++++.+. ..+||+|...+..|+-..-+.|- +.++.- ..||+|
T Consensus 1 ~~~~l~~~la~~~~~~~~~~~~~~~-------~~~lrIgyq~~~~~~~~~~~~~~-----------~ek~~~--~~kV~w 60 (314)
T PRK11553 1 MRNIIKLALAGLLSVSTLAVAAESS-------PEALRIGYQKGSIGLVLAKSHQL-----------LEKRFP--QTKISW 60 (314)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCC-------CCEEEEEECCCCHHHHHHHHCCH-----------HHHHCC--CCCEEE
T ss_conf 9779999999999998754443348-------97599996177415899985286-----------766178--983589
Q ss_pred EECCC-CCCHHHHHCCCEEEEEECCCC-CCCCHHCCCCCCCCC----CCCCCEEEEEECCCCCCCHHHHCCCCEEEEECC
Q ss_conf 98143-100267743962799812432-532011027843532----234402346302113475364178620343134
Q gi|254780170|r 81 LPLNA-KERFLALQSKQIDILSRNTDW-TLLREISLGLAFRPI----TYFDGQGFIMHKKKGISSVSQLSGASICVQAGT 154 (342)
Q Consensus 81 v~~~~-~~rf~aL~sG~vDil~~~~T~-T~~Rd~~~~v~Fs~~----~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GT 154 (342)
+..+. ...+.+|.+|.+|+...+-+. ...+ ..+.++.-. ....++.++|+++++|++++||+||||++..||
T Consensus 61 ~~F~~G~~~~eAl~aG~iD~~~~g~~p~i~a~--a~G~~~~~va~~~~~~~~~~i~V~~~S~I~s~aDLkGKkVa~~~Gs 138 (314)
T PRK11553 61 VEFPAGPQMLEALNVGSIDLGSTGDIPPIFAQ--AAGADLVYVGVEPPKPKAEVILVAENSPIKTVADLKGHKVAFQKGS 138 (314)
T ss_pred EECCCCHHHHHHHHCCCCCEEEECCHHHHHHH--HCCCCEEEEEEECCCCCCEEEEEECCCCCCCHHHHCCCEEEEECCC
T ss_conf 97897489999997699754511585899998--6699869999863788641899848987788889389989741797
Q ss_pred CHHHHHHHHHHHCCCCC---CEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHH
Q ss_conf 26999999998629985---0787479899999987396029982504799999
Q gi|254780170|r 155 TTELTLADYFKAHNMKY---HPIVFERVEEIDAAYRAHRCDAYTGDISALYALK 205 (342)
Q Consensus 155 T~e~~l~~~~~~~~~~~---~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~ 205 (342)
+.+..|...+++.|++. +++.. ...++..+|.+|++||+..=.+.+....
T Consensus 139 ~~~~~l~~aL~~aGL~~~DV~~v~l-~p~d~~aAl~~G~VDA~~~w~P~~~~a~ 191 (314)
T PRK11553 139 SSHNLLLRALRQAGLKFTDIQPTYL-TPADARAAFQQGNVDAWAIWDPYYSAAL 191 (314)
T ss_pred HHHHHHHHHHHHCCCCHHHEEEEEC-CCHHHHHHHHCCCCCEEEECCHHHHHHH
T ss_conf 3799999999986998899189845-9388999996699788997567899998
No 16
>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function.
Probab=99.50 E-value=1.9e-12 Score=99.10 Aligned_cols=227 Identities=14% Similarity=0.107 Sum_probs=138.0
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 91389999999999998401244216899985794999871789883068898988015099999999996798220259
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQY 80 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~ 80 (342)
|+|++++++++++++..++..+. + .-.+|++|+-+...|-... .+|.- |.+.+.++++ .+||+
T Consensus 1 m~~r~l~~~~~~~~~~~~~a~a~-~------~p~~l~~gv~P~~~~~~~~---~~~~P----l~~yL~~~lg---~~Ve~ 63 (288)
T TIGR03431 1 MLRRLILSLVAAFMLISSNAQAE-D------WPKELNFGIIPTENASDLK---QRWEP----LADYLSKKLG---VKVKL 63 (288)
T ss_pred CCHHHHHHHHHHHHHHCCHHHHC-C------CCCEEEEEEECCCCHHHHH---HHHHH----HHHHHHHHHC---CCEEE
T ss_conf 90889999999999974322430-4------8836899980699999999---99999----9999999878---97899
Q ss_pred EEC-CCCCCHHHHHCCCEEEEEECC-CCCCCCHHCCCC-CCCC-------CCCCCCEEEEEECCCCCCCHHHHCCCCEEE
Q ss_conf 981-431002677439627998124-325320110278-4353-------223440234630211347536417862034
Q gi|254780170|r 81 LPL-NAKERFLALQSKQIDILSRNT-DWTLLREISLGL-AFRP-------ITYFDGQGFIMHKKKGISSVSQLSGASICV 150 (342)
Q Consensus 81 v~~-~~~~rf~aL~sG~vDil~~~~-T~T~~Rd~~~~v-~Fs~-------~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v 150 (342)
++. +....+.+|.+|++|+..-+. ++-...+. .++ -+.. +.|+ -.|+||+|++|++++||+||+||.
T Consensus 64 ~~~~~y~~~~eal~~g~~Dia~~~p~~yv~a~~~-~~~~~la~~~~~~g~~~y~--s~iivr~Ds~i~sl~DLkGk~iaf 140 (288)
T TIGR03431 64 FFATDYAGVIEGMRFGKVDIAWYGPSSYAEAYQK-ANAEAFAIEVNADGSTGYY--SVLIVKKDSPIKSLEDLKGKTFGF 140 (288)
T ss_pred EECCCHHHHHHHHHCCCCEEEEECCHHHHHHHHC-CCCEEEEEEECCCCCCCEE--EEEEEECCCCCCCHHHHCCCEEEE
T ss_conf 9689999999999859830999884788998652-5974889985158886457--999998999888778957987660
Q ss_pred EE-CCCHHHHHH-HHH-HHCCCCC-----CEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHH-CCC-CHHHCCCCCC
Q ss_conf 31-342699999-999-8629985-----078747989999998739602998250479999983-678-0010025644
Q gi|254780170|r 151 QA-GTTTELTLA-DYF-KAHNMKY-----HPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLT-NDR-PSEHVILPDI 220 (342)
Q Consensus 151 ~~-GTT~e~~l~-~~~-~~~~~~~-----~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~-~~~-p~~~~il~e~ 220 (342)
.. .||+--.+. .++ +..++.. ++....+++.+..++.+|.+||-......+...... .++ .++++|+-+.
T Consensus 141 ~~~~StSG~l~P~~~L~~~~g~~~~~~f~~v~~~gshd~~~~aV~~G~~Dag~~~~~~~~~~~~~~~~~~~~~lrvi~~S 220 (288)
T TIGR03431 141 VDPNSTSGFLVPSYYLFKKNGIKPKEYFKKVTFSGSHEAAILAVANGTVDAATTNDENLDRMIRKGQPDAMEDLRIIWKS 220 (288)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHEEECCCHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCHHHCEEEEEEC
T ss_conf 28741111399999999865997254553133157878999999859932998338889999974796303136999867
Q ss_pred CCCCCEEEECCCC-CHHHHHHHHHHHHH
Q ss_conf 4237101000277-75799998877443
Q gi|254780170|r 221 ISKSPLAPAIIQG-DTEWYNIVSWTHYA 247 (342)
Q Consensus 221 iskEPlg~avr~g-D~~w~d~V~W~~~a 247 (342)
-.--+..+++|++ |++.++.++-++..
T Consensus 221 ~~iP~~~~~v~~~l~~~~~~~i~~all~ 248 (288)
T TIGR03431 221 PLIPNGPIVYRKDLPADLKAKIRKAFLN 248 (288)
T ss_pred CCCCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 8888771899699999999999999980
No 17
>COG3221 PhnD ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=99.40 E-value=1.2e-11 Score=94.08 Aligned_cols=236 Identities=13% Similarity=0.092 Sum_probs=141.7
Q ss_pred CHHHHHHHHHH-HHHHHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEE
Q ss_conf 91389999999-99999840124421689998579499987178988306889898801509999999999679822025
Q gi|254780170|r 1 MYKDFFVSILC-LIILFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQ 79 (342)
Q Consensus 1 M~K~~l~~~l~-l~~~~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe 79 (342)
|+|+.++...+ ++++...+|+.+.+....-..-++|++|+.+.. +..+-...|.++.=.|++++ + .+|+
T Consensus 1 m~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~gi~p~e---~~~~~~~~~~pl~~~L~~~l----G---~~V~ 70 (299)
T COG3221 1 MKKKKLLLASAAAVLALAGCCGSSESDAPAAEDPKELRVGIVPTE---NPTNLIPAWAPLADYLEKEL----G---IPVE 70 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCC---CHHHHHHHHHHHHHHHHHHH----C---CCEE
T ss_conf 942788999999999998632577454322268753599976888---86878876566998988986----9---9543
Q ss_pred EE-ECCCCCCHHHHHCCCEEEEEECCC-CCCCCHHC-CCCCCCCCCCCCCE-----EEEEECCCCCCCHHHHCCCCEEEE
Q ss_conf 99-814310026774396279981243-25320110-27843532234402-----346302113475364178620343
Q gi|254780170|r 80 YL-PLNAKERFLALQSKQIDILSRNTD-WTLLREIS-LGLAFRPITYFDGQ-----GFIMHKKKGISSVSQLSGASICVQ 151 (342)
Q Consensus 80 ~v-~~~~~~rf~aL~sG~vDil~~~~T-~T~~Rd~~-~~v~Fs~~~~~dgq-----~~lVrk~~~i~s~~dL~G~~I~v~ 151 (342)
+. ..+....+.+|.+|++|+.+-+-+ .....+.. ..-.|......||+ .|+|+++++|++++||+|||+|..
T Consensus 71 ~~~a~dy~~vieal~~g~~D~A~~~~~a~~~a~~~~~~~e~~~~~~~~dg~~~Y~S~~i~~~ds~i~sl~dlkgk~~af~ 150 (299)
T COG3221 71 FFVATDYAAVIEALRAGQVDIAWLGPSAYVEAVDRALAGEPLAQTVQKDGSPGYYSVIIVRADSPIKSLEDLKGKRFAFG 150 (299)
T ss_pred EEECCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEEEECCCCCCHHHHHCCCEEECC
T ss_conf 57257689999998589610774185778998641245420133212589865178999927997433788269967636
Q ss_pred ECCCHHHH-H-HHHHHHCC-C----CCCEEEECC-HHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC--CHHHCCCCCCC
Q ss_conf 13426999-9-99998629-9----850787479-89999998739602998250479999983678--00100256444
Q gi|254780170|r 152 AGTTTELT-L-ADYFKAHN-M----KYHPIVFER-VEEIDAAYRAHRCDAYTGDISALYALKLTNDR--PSEHVILPDII 221 (342)
Q Consensus 152 ~GTT~e~~-l-~~~~~~~~-~----~~~~v~~~~-~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~--p~~~~il~e~i 221 (342)
.-+++-.. + ..++...+ + .+..+.|.+ ++.++.++.+|++|+-+.+.+.........+. .++.+|+-+.=
T Consensus 151 d~~StSG~l~P~~~L~~~g~~d~~~~f~~v~~~G~H~~a~~aV~nG~vDva~~~~~~~~~~~~~~~~~~~~~l~vi~~S~ 230 (299)
T COG3221 151 DPDSTSGYLFPLYYLAKEGGIDPDKFFGEVIFSGGHDAAVLAVANGQVDVAAVNSSARGLLKKAAPEGVAEKLRVIWKSP 230 (299)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCHHHHHCEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCHHHCEEEEECC
T ss_conf 99854124768999998438984654226503570799999997488308852288887776404334533426999558
Q ss_pred CCCCEEEECCCC-CHHHHHHHHHHHH
Q ss_conf 237101000277-7579999887744
Q gi|254780170|r 222 SKSPLAPAIIQG-DTEWYNIVSWTHY 246 (342)
Q Consensus 222 skEPlg~avr~g-D~~w~d~V~W~~~ 246 (342)
.--...+++|++ +++++.-++=.+.
T Consensus 231 ~iP~~pi~vr~~L~~~~k~kl~~af~ 256 (299)
T COG3221 231 LIPNDPIAVRSDLPADLKEKLRDAFL 256 (299)
T ss_pred CCCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 98999788837799999999999998
No 18
>PRK11480 tauA taurine transporter substrate binding subunit; Provisional
Probab=99.32 E-value=5.6e-11 Score=89.83 Aligned_cols=153 Identities=17% Similarity=0.106 Sum_probs=112.0
Q ss_pred EEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCC-CCCHHHHHCCCEEEEEECCCCCCCCHHC
Q ss_conf 499987178988306889898801509999999999679822025998143-1002677439627998124325320110
Q gi|254780170|r 35 FLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNA-KERFLALQSKQIDILSRNTDWTLLREIS 113 (342)
Q Consensus 35 ~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~-~~rf~aL~sG~vDil~~~~T~T~~Rd~~ 113 (342)
+||+|.....-|+.+...+|.+. ++++ .+|+|+..+. ...+.+|.+|.+|+..-+.+... -..+
T Consensus 24 ~v~igYq~~~~p~~~aka~g~~e-----------k~~G---~kV~W~~F~sG~~~~eAlasG~vDig~~G~~P~~-~a~a 88 (320)
T PRK11480 24 NVTVAYQTSAEPAKVAQADNTFA-----------KESG---ATVDWRKFDSGASIVRALASGDVQIGNLGSSPLA-VAAS 88 (320)
T ss_pred EEEEEEECCCCCHHHHHHCCCHH-----------HHCC---CCEEEEECCCHHHHHHHHHCCCCCEECCCCCHHH-HHHH
T ss_conf 59999806986289998638456-----------7519---8127997797599999996699756457784799-9986
Q ss_pred CCCCC----CCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCC---CEEEECCHHHHHHHH
Q ss_conf 27843----53223440234630211347536417862034313426999999998629985---078747989999998
Q gi|254780170|r 114 LGLAF----RPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKY---HPIVFERVEEIDAAY 186 (342)
Q Consensus 114 ~~v~F----s~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~---~~v~~~~~~~a~~al 186 (342)
.++++ ....+-++..++||+ +|++++||+||||+|..||+++-.|-..++..|++. +++ .=...++..|+
T Consensus 89 ~g~~ik~v~i~~~~~~~ealvv~~--~I~s~~DLkGKkVav~~gS~~hy~ll~aL~~~Gl~~~dV~iv-~m~p~d~~aA~ 165 (320)
T PRK11480 89 QQVPIEVFLLASKLGNSEALVVKK--TISKPEDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIV-NLQPPAIIAAW 165 (320)
T ss_pred CCCCEEEEEEECCCCCCEEEEECC--CCCCHHHCCCCEEECCCCCCHHHHHHHHHHHCCCCHHHEEEE-ECCCHHHHHHH
T ss_conf 799859999854789743899568--999968849998960788731899999999859998990788-44928899999
Q ss_pred HCCCEEEEEECCHHHHHHH
Q ss_conf 7396029982504799999
Q gi|254780170|r 187 RAHRCDAYTGDISALYALK 205 (342)
Q Consensus 187 ~~Gr~DA~~~D~s~La~~~ 205 (342)
.+|.+||.+.=.+.|...+
T Consensus 166 ~~G~vDa~~~W~P~l~~l~ 184 (320)
T PRK11480 166 QRGDIDGAYVWAPAVNALE 184 (320)
T ss_pred HCCCCCEEEECCHHHHHHH
T ss_conf 7699787962677999998
No 19
>TIGR01098 3A0109s03R phosphonate ABC transporter, periplasmic phosphonate-binding protein; InterPro: IPR005770 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices. This is a family of periplasmic proteins which are part of the transport system for alkylphosphonate uptake. ; GO: 0015604 phosphonate transmembrane transporter activity, 0015716 phosphonate transport, 0030288 outer membrane-bounded periplasmic space.
Probab=99.20 E-value=4.4e-09 Score=77.86 Aligned_cols=233 Identities=15% Similarity=0.107 Sum_probs=141.7
Q ss_pred CHHHHHHHHHHHHHHHHHHC----------CCCCHH-------HHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHH
Q ss_conf 91389999999999998401----------244216-------8999857949998717898830688989880150999
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSF----------STNASI-------LGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDF 63 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~----------aa~a~t-------Ld~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl 63 (342)
|||.+++.++++.++++++| ...++. +++-..-.+|++|+=++--+ .+...----|
T Consensus 1 mkr~~~~~~~~~~~~~~~~~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~g~~P~e~~-------~~~~~~~~pL 73 (299)
T TIGR01098 1 MKRLLALLAALLVASLAAACGSSEIDNRDCAAKAADAADADADVEKSETPKELNFGILPGENA-------SNLARRWEPL 73 (299)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCHHHCCCCCCEEEEEEECCCCH-------HHHHHHHHHH
T ss_conf 947889999999999998754200145435655100101562121036777268998448875-------5777766899
Q ss_pred HHHHHHHHCCCCCEEEEE-ECCCCCCHHHHHCCCEEEEEE-CCCCCCCCHHCCCCCCCCC----CCCCC-----EEEEEE
Q ss_conf 999999967982202599-814310026774396279981-2432532011027843532----23440-----234630
Q gi|254780170|r 64 CRALSSAIFDDPSKIQYL-PLNAKERFLALQSKQIDILSR-NTDWTLLREISLGLAFRPI----TYFDG-----QGFIMH 132 (342)
Q Consensus 64 ~raiAaal~gd~~kVe~v-~~~~~~rf~aL~sG~vDil~~-~~T~T~~Rd~~~~v~Fs~~----~~~dg-----q~~lVr 132 (342)
...+-+.++ .||++. ..+....+.|+.+|++|+.+- +.|+-...+......|..+ ...+| -.|+|+
T Consensus 74 ~~~Lek~Lg---~kV~~~~~~dY~a~IEamr~g~~D~a~~g~~sY~~A~~~~~~~~~a~~~~~~~~~~g~~~Y~S~~iv~ 150 (299)
T TIGR01098 74 KDYLEKKLG---IKVELFVATDYSAVIEAMRFGRVDIAWFGPSSYVLAHRRANAEAFALTAIRYVSTDGSPGYYSVIIVK 150 (299)
T ss_pred HHHHHHHCC---CCEEEEEECCCCCEEEEECCCCEEEEEECCCHHHEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEEEC
T ss_conf 998887558---86799861683103342326807898347851232200138701213443311688898348999983
Q ss_pred CCCCCCCHHH----HCCCCEEEE-ECCCHHHHHHH--HHHHCCC--C-------CCEEEECCHHHHHHHHHCCCEEEEEE
Q ss_conf 2113475364----178620343-13426999999--9986299--8-------50787479899999987396029982
Q gi|254780170|r 133 KKKGISSVSQ----LSGASICVQ-AGTTTELTLAD--YFKAHNM--K-------YHPIVFERVEEIDAAYRAHRCDAYTG 196 (342)
Q Consensus 133 k~~~i~s~~d----L~G~~I~v~-~GTT~e~~l~~--~~~~~~~--~-------~~~v~~~~~~~a~~al~~Gr~DA~~~ 196 (342)
++|+|++++| |+||++|.. .-||+--.+-. .+++.+. + ++++...+++....++.+|+|||-+.
T Consensus 151 ~dS~i~~~~DlL~~LKGK~~af~Dp~STSG~l~P~~~l~~~~~~~~~~~d~~~F~~~~~~G~Hd~~~~~V~nG~vDaA~~ 230 (299)
T TIGR01098 151 ADSPIKSLKDLLKKLKGKTFAFGDPASTSGYLVPRYQLLKEGGLDADKDDDKFFSEVVFSGSHDASILAVANGKVDAATN 230 (299)
T ss_pred CCCCCCCHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCEEEE
T ss_conf 89996338999975079759850688751247788998765078988853452332688431589999988088545765
Q ss_pred CCHHHHHHHHHC-CC-------------CHHHCCCCCC--CCCCCEEEECCCC-CH--HHHHHHHHHH
Q ss_conf 504799999836-78-------------0010025644--4237101000277-75--7999988774
Q gi|254780170|r 197 DISALYALKLTN-DR-------------PSEHVILPDI--ISKSPLAPAIIQG-DT--EWYNIVSWTH 245 (342)
Q Consensus 197 D~s~La~~~~~~-~~-------------p~~~~il~e~--iskEPlg~avr~g-D~--~w~d~V~W~~ 245 (342)
..+.+--..... .. +.+++|+-+. |=.. .+++|++ ++ ++++-++-++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~g~~D~~~~~~vI~~S~~IPnd--p~~~R~~L~~yP~~k~ki~~~F 296 (299)
T TIGR01098 231 NSSAIERLKKRGPSDKFKKKVAKGATDLMKKVRVIWKSPLIPND--PIAVRSDLPPYPELKEKIRDAF 296 (299)
T ss_pred CHHHHHHHHHCCCCCCCCEEECCCCCCCHHCEEEEEECCCCCCC--CEEEECCCCCCHHHHHHHHHHH
T ss_conf 30446656530323565155204776713701787523787787--5465257896677999999998
No 20
>pfam09084 NMT1 NMT1/THI5 like. This family contains the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine. They are regulated by thiamine.
Probab=99.11 E-value=3e-09 Score=78.86 Aligned_cols=120 Identities=16% Similarity=0.144 Sum_probs=91.0
Q ss_pred CEEEEEEC-CCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCC---CCCCCEEEEEECCCCCCCHHHHCCCCEEEE
Q ss_conf 20259981-43100267743962799812432532011027843532---234402346302113475364178620343
Q gi|254780170|r 76 SKIQYLPL-NAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPI---TYFDGQGFIMHKKKGISSVSQLSGASICVQ 151 (342)
Q Consensus 76 ~kVe~v~~-~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~---~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~ 151 (342)
.+||+++. ++.+.+.+|.+|++|+.+.+.+... .....++++... +-..+..++++++++|++++||+||+|++.
T Consensus 21 L~Ve~~~~~~~~~~~~al~sG~~D~a~~~~~~~~-~~~~~g~~~~~i~~~~~~~~~~~~v~~~~~i~s~~DLkGk~i~~~ 99 (216)
T pfam09084 21 LDVEIVEPADPSDAVQLVAAGKADFGVSYQPSLL-LARAKGLPVVSVAALIQHPPNGLISLKDSGIKSPKDLKGKRIGYS 99 (216)
T ss_pred CCEEEEECCCCHHHHHHHHCCCCCEEECCCHHHH-HHHHCCCEEEEEEECCCCCCEEEEEECCCCCCCHHHHCCCEEEEE
T ss_conf 8089996688278999997698677853719999-999789849999964358972899978889899789589889963
Q ss_pred ECCCHHHHHHHHHHHCCCCC---CEEEECCHHHHHHHHHCCCEEEEEEC
Q ss_conf 13426999999998629985---07874798999999873960299825
Q gi|254780170|r 152 AGTTTELTLADYFKAHNMKY---HPIVFERVEEIDAAYRAHRCDAYTGD 197 (342)
Q Consensus 152 ~GTT~e~~l~~~~~~~~~~~---~~v~~~~~~~a~~al~~Gr~DA~~~D 197 (342)
.++++...+..+++++|++. +++.. +..+..++|.+|++||++.-
T Consensus 100 ~~~~~~~~l~~~L~~~Gl~~~dv~~v~~-~~~~~~~al~~G~vDa~~~~ 147 (216)
T pfam09084 100 GSPFEEALLKALLAKAGGDPSDVTLVNV-GGTSLSPALLTGKVDAAIGG 147 (216)
T ss_pred CCCHHHHHHHHHHHHCCCCHHHEEEEEC-CHHHHHHHHHCCCCCEEEEC
T ss_conf 7972899999999985999899089967-84888889856995589962
No 21
>COG0715 TauA ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]
Probab=99.05 E-value=3.1e-09 Score=78.81 Aligned_cols=178 Identities=15% Similarity=0.108 Sum_probs=113.9
Q ss_pred EEEEEEC-CCCCCHHHHHCCCEEEE--EECCCCC-CCCHHCCCCCCCCCCCCC--CEEEEEECCCCCCCHHHHCCCCEEE
Q ss_conf 0259981-43100267743962799--8124325-320110278435322344--0234630211347536417862034
Q gi|254780170|r 77 KIQYLPL-NAKERFLALQSKQIDIL--SRNTDWT-LLREISLGLAFRPITYFD--GQGFIMHKKKGISSVSQLSGASICV 150 (342)
Q Consensus 77 kVe~v~~-~~~~rf~aL~sG~vDil--~~~~T~T-~~Rd~~~~v~Fs~~~~~d--gq~~lVrk~~~i~s~~dL~G~~I~v 150 (342)
+|+++.. .|....++|.+|++|+. ...++.- ..+.....+-.......+ ++.++++++++|++++||+||+|++
T Consensus 62 ~V~~~~~~~~~~~~~~l~~G~~D~a~~~~~~~~~~~~~~~g~pv~~va~~~~~~~~~~i~~~~~~~i~~~adlkGk~vg~ 141 (335)
T COG0715 62 DVELVEFTGGAPVLEALAAGALDFAVYYTGDTPLIAAGAAGAPVKVVAALVQNGNGIALLVLKDSGIKSVADLKGKKVGV 141 (335)
T ss_pred EEEEEECCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCEEEEEEEEECCCCEEEEECCCCCCCCHHHCCCCEEEE
T ss_conf 58997079845799999769988874237855999963569997999987437973299973887767713338998998
Q ss_pred EECCC-HHHHHHHHHHHCCCCCCE--EEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC-CCCC-CCC
Q ss_conf 31342-699999999862998507--874798999999873960299825047999998367800100256-4442-371
Q gi|254780170|r 151 QAGTT-TELTLADYFKAHNMKYHP--IVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILP-DIIS-KSP 225 (342)
Q Consensus 151 ~~GTT-~e~~l~~~~~~~~~~~~~--v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~-e~is-kEP 225 (342)
..+++ ++..|..+++++|++..- +..-...++.++|.+|++||++.=.+....... .+..+.++. ..+- ..|
T Consensus 142 ~~~~~~~~~~l~~~L~~~Gl~~~dv~~v~~~~~~~~~al~~g~vda~~~~ep~~~~~~~---~~~~~~~~~~~~~~~~~~ 218 (335)
T COG0715 142 PFGGSTSDFLLRYALAKAGLDPDDVELVNLPPADAVAALAAGQVDAFVVWEPWNAAAEG---EGGGRVLLDGADLWGNHP 218 (335)
T ss_pred ECCCCCHHHHHHHHHHHCCCCHHHCEEEECCHHHHHHHHHCCCCCEEEECCHHHHHHHH---CCCCEEEEECCCCCCCCC
T ss_conf 18997079999999998699989946873692999999975986889966679899731---578579861566676674
Q ss_pred EEEECCCCC--HHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 010002777--57999988774433112123301
Q gi|254780170|r 226 LAPAIIQGD--TEWYNIVSWTHYAMVTAEELGIT 257 (342)
Q Consensus 226 lg~avr~gD--~~w~d~V~W~~~ali~Aee~git 257 (342)
...++.+.+ .+-.++|.-.+.++..|.++=..
T Consensus 219 ~~~~~~~~~~~~~~p~~~~~~v~a~~~a~~~~~~ 252 (335)
T COG0715 219 ELVLVVRKEFIEANPEAVKAFLKALAKATAWANA 252 (335)
T ss_pred EEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_conf 2699955887766999999999999999999997
No 22
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region. Members of this family are ABC transporter periplasmic binding proteins associated with the urea carboxylase/allophanate hydrolase pathway, an alternative to urease for urea degradation. The protein is restricted to bacteria with the pathway, with its gene close to the urea carboxylase and allophanate hydrolase genes. The substrate for this transporter therefore is likely to be urea or a compound from which urea is easily derived.
Probab=99.04 E-value=1.6e-09 Score=80.60 Aligned_cols=167 Identities=14% Similarity=0.161 Sum_probs=112.9
Q ss_pred CEEEEEEE--CCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEC-CCCCCHHHHHCCCEEEEEECCCCCCCC
Q ss_conf 94999871--789883068898988015099999999996798220259981-431002677439627998124325320
Q gi|254780170|r 34 GFLKCGIN--TGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPL-NAKERFLALQSKQIDILSRNTDWTLLR 110 (342)
Q Consensus 34 G~L~vGv~--~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~-~~~~rf~aL~sG~vDil~~~~T~T~~R 110 (342)
..+++|.+ .++-|+.+-.++|-.. .-++.-+ .+|+++.. +..+.+.++.+|++|-.+.+..-+..-
T Consensus 2 ~~~kig~S~w~Gw~Pw~~A~e~Gifk--------Kw~~k~G---i~Vel~~f~dy~~si~a~~AG~~Dg~~~Tn~Dal~i 70 (328)
T TIGR03427 2 DKFKVCWSIYAGWMPWGYAAQQGIVD--------KWADKYG---ITIEVVQINDYVESINQYTAGKFDGCTMTNMDALTI 70 (328)
T ss_pred CCEEEEEECCCCHHHHHHHHHCCCHH--------HHHHHCC---CEEEEEECCCHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf 93399972685388899999749265--------5588759---737999828848889999758977477626156651
Q ss_pred HHCCCCCCCCCC---CCCC-EEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCC---CEEEECCHHHHH
Q ss_conf 110278435322---3440-234630211347536417862034313426999999998629985---078747989999
Q gi|254780170|r 111 EISLGLAFRPIT---YFDG-QGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKY---HPIVFERVEEID 183 (342)
Q Consensus 111 d~~~~v~Fs~~~---~~dg-q~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~---~~v~~~~~~~a~ 183 (342)
-...++++.... |-.| -++++| ++++++||+||+|++..||+++-.|...+...|+.. ++|. -+..++.
T Consensus 71 ~aa~Gvd~~~vlv~D~SnG~D~Ivak---~~~slaDLKGKkVav~~~svshyLL~rALe~aGLs~~DV~vVn-~~~~d~~ 146 (328)
T TIGR03427 71 PAAGGVDTTALIVGDFSNGNDGIVLK---GGKSLADLKGQKVNLVELSVSHYLLARALESVGLSEKDVKVVN-TSDADIV 146 (328)
T ss_pred HHCCCCCEEEEEEECCCCCCCEEEEC---CCCCHHHHCCCEEECCCCCCHHHHHHHHHHHCCCCHHHEEEEE-CCCHHHH
T ss_conf 31179972899985257887479978---9988788489888324787079999999998699889907884-7954699
Q ss_pred HHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC
Q ss_conf 99873960299825047999998367800100256
Q gi|254780170|r 184 AAYRAHRCDAYTGDISALYALKLTNDRPSEHVILP 218 (342)
Q Consensus 184 ~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~ 218 (342)
++|.+|++||+++=.+.|.-.+. .|+.+.|..
T Consensus 147 aAf~sg~VdA~vTWeP~ls~i~~---~~ga~~iF~ 178 (328)
T TIGR03427 147 AAFITKDVTAVVTWNPQLSEIKA---QPGANEVFD 178 (328)
T ss_pred HHHHCCCCCEEEEECHHHHHHHH---CCCCCEEEE
T ss_conf 99747998789997856899972---899826442
No 23
>KOG1052 consensus
Probab=99.02 E-value=1.2e-07 Score=68.66 Aligned_cols=258 Identities=20% Similarity=0.143 Sum_probs=163.4
Q ss_pred HCCEEEEEEECCCCCCEEECC------CCCEEEEHHHHHHHHHHHHCCCCCEEEEEEC---------CCCCCHHHHHCCC
Q ss_conf 579499987178988306889------8988015099999999996798220259981---------4310026774396
Q gi|254780170|r 32 KRGFLKCGINTGLVGFAEVKA------NGDWKGFDVDFCRALSSAIFDDPSKIQYLPL---------NAKERFLALQSKQ 96 (342)
Q Consensus 32 ~rG~L~vGv~~~~ppfs~~d~------~G~~~GfDVDl~raiAaal~gd~~kVe~v~~---------~~~~rf~aL~sG~ 96 (342)
....++|++-...|-+.+... ...+.||++|+.+++++.+.-+ ..+.+++. +|++.+-.|.+|+
T Consensus 214 ~~~~l~v~~~~~~P~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~-~~~~~~~~~~g~~~~~g~~~g~v~~l~~~~ 292 (656)
T KOG1052 214 NGKPLRVGVVTEPPFVDLVEDLAILNGNDRIEGFEIDLLQALAKRLNFS-YEIIFVPDGSGSRDPNGNWDGLVGQLVDGE 292 (656)
T ss_pred CCCEEEEEEECCCCCEEEECCCCCCCCCCCCCEEEHHHHHHHHHHCCCE-EEEEECCCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 8953799877158952563043345777640126099999999876975-899962578888688887678999997181
Q ss_pred EEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCC----------------------------------------
Q ss_conf 2799812432532011027843532234402346302113----------------------------------------
Q gi|254780170|r 97 IDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKG---------------------------------------- 136 (342)
Q Consensus 97 vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~---------------------------------------- 136 (342)
+|+. +.+|+|.+| ..-|||+.||...|.++++++...
T Consensus 293 advg-~~~tit~~R--~~~vdfT~p~~~~~~~i~~~~~~~~~~~~~fl~Pf~~~vW~~i~~~~l~~~~~~~~~~~~~~~~ 369 (656)
T KOG1052 293 ADVG-ADITITPER--SKYVDFTIPYLQFGIVIIVRKPDSRSKLWNFLAPFSPEVWLLILASLLLVGLLLWILERLSPYE 369 (656)
T ss_pred EEEE-ECEEECCCH--HHCEEECCEEEECCEEEEEEECCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 3001-031760020--3005321328754579999826742017787466718999999999999999998775304411
Q ss_pred ------------------------------------------------------------------------CCCHHHHC
Q ss_conf ------------------------------------------------------------------------47536417
Q gi|254780170|r 137 ------------------------------------------------------------------------ISSVSQLS 144 (342)
Q Consensus 137 ------------------------------------------------------------------------i~s~~dL~ 144 (342)
|+++.||.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt~~~~~~~i~~~~dL~ 449 (656)
T KOG1052 370 LPPRQIVTSLFSLLNCLWLTVGSLLQQGSDEIPRSLSTRLLLGAWWLFVLILISSYTANLTAFLTVPRLRSPIDSLDDLA 449 (656)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCHHHHH
T ss_conf 35432312112366778998876551256546630779999999999999999875573230145156788735799998
Q ss_pred ---CCCEEEEECCCHHHHHHHH-HHHCCCCC-CEEEECCHHHHHHHHHCCC--EEEEEECCHHHHHHHHHCCCCHHHCCC
Q ss_conf ---8620343134269999999-98629985-0787479899999987396--029982504799999836780010025
Q gi|254780170|r 145 ---GASICVQAGTTTELTLADY-FKAHNMKY-HPIVFERVEEIDAAYRAHR--CDAYTGDISALYALKLTNDRPSEHVIL 217 (342)
Q Consensus 145 ---G~~I~v~~GTT~e~~l~~~-~~~~~~~~-~~v~~~~~~~a~~al~~Gr--~DA~~~D~s~La~~~~~~~~p~~~~il 217 (342)
+..++.+.|+-+...+.+- ..-+...- ..+.+.+.++....+..|. --++..|...+.-..... ..-++.++
T Consensus 450 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~c~~~~v 528 (656)
T KOG1052 450 DQSNIPYGTQRGSFTRIYLEESEDMWAFKVSQRSVPLASPEEGVERVRKGPSGGYAFASDELYLAYLFLRD-EICDLTEV 528 (656)
T ss_pred HHCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHC-CCCCEEEE
T ss_conf 75087710233605678776527765332146554568999999999669987679994137799998623-68624880
Q ss_pred CCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHH
Q ss_conf 64442371010002777579999887744331121233015208988622671778876235887650333799867999
Q gi|254780170|r 218 PDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTY 297 (342)
Q Consensus 218 ~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~ 297 (342)
++.+...++| ++++ .+.+++.++-.+.-+. |.|+-+..-+..... . +. ..-... ..-...|+++.=|..
T Consensus 529 ~~~~~~~~~~-~~~~-~Spl~~~is~~Il~l~---e~g~l~~~~~kw~~~-~-~~---~~~~~~-~~~~~~l~~~~~~g~ 597 (656)
T KOG1052 529 GEPFLYKGYG-AFPK-GSPLRSLISRAILKLQ---ETGILQKLKRKWFSK-K-PC---LPKCSQ-TEKTKALDLESFWGL 597 (656)
T ss_pred CCCCCCCCEE-EECC-CCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHC-C-CC---CCCCCC-CCCCCCCCHHHHHHH
T ss_conf 6645657645-7618-9834788749999856---517999999998525-7-76---765555-565553558999999
Q ss_pred HHHHHCCC
Q ss_conf 99997186
Q gi|254780170|r 298 RIIRHMGN 305 (342)
Q Consensus 298 ~~i~~vGN 305 (342)
-+|-.+|-
T Consensus 598 F~i~~~g~ 605 (656)
T KOG1052 598 FLILLVGY 605 (656)
T ss_pred HHHHHHHH
T ss_conf 99999999
No 24
>KOG1053 consensus
Probab=98.97 E-value=1.1e-09 Score=81.66 Aligned_cols=185 Identities=16% Similarity=0.224 Sum_probs=125.1
Q ss_pred EEEHHHHHHHHHHHHCCCCC--EE------EEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEE
Q ss_conf 01509999999999679822--02------59981431002677439627998124325320110278435322344023
Q gi|254780170|r 57 KGFDVDFCRALSSAIFDDPS--KI------QYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQG 128 (342)
Q Consensus 57 ~GfDVDl~raiAaal~gd~~--kV------e~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~ 128 (342)
.||-||+.+.+|..+.-+.+ .| +.+.-.|...+-.|--++.||.+.+.|++.+| +..|||+.|++-+|-+
T Consensus 466 kGfCIDiLkKlA~~v~FtYDLYlVtnGKhGkk~ng~WnGmIGev~~~rA~MAVgSltINeeR--SevVDFSvPFveTgIs 543 (1258)
T KOG1053 466 KGFCIDILKKLARDVKFTYDLYLVTNGKHGKKINGVWNGMIGEVVYQRADMAVGSLTINEER--SEVVDFSVPFVETGIS 543 (1258)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEECCCCHHHHHHHHHHHHHEEEEEEEECHHH--HCCCCCCCCCCCCCEE
T ss_conf 05569999998865386368999527754530057310268998752001366556753123--1200222443004617
Q ss_pred EEEECCCCCCCHH---------------------------------------HH-CCCC---------------------
Q ss_conf 4630211347536---------------------------------------41-7862---------------------
Q gi|254780170|r 129 FIMHKKKGISSVS---------------------------------------QL-SGAS--------------------- 147 (342)
Q Consensus 129 ~lVrk~~~i~s~~---------------------------------------dL-~G~~--------------------- 147 (342)
+||+..++.-+.. .| +|++
T Consensus 544 VmV~rsngtvspsAFLePfs~svWVmmFVm~livaai~vFlFEy~SPvgyn~~l~~gkkpggp~FtigkaiwllwaLvFn 623 (1258)
T KOG1053 544 VMVARSNGTVSPSAFLEPFSPSVWVMMFVMCLIVAAITVFLFEYFSPVGYNRNLANGKKPGGPSFTIGKAIWLLWALVFN 623 (1258)
T ss_pred EEEEECCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHC
T ss_conf 99981278658435307764579999999999999999988742075553644467778898630120679999999827
Q ss_pred ----EEEEECCCHHH------------------HHHHHHHHC-------CCC---C-----C--E---------------
Q ss_conf ----03431342699------------------999999862-------998---5-----0--7---------------
Q gi|254780170|r 148 ----ICVQAGTTTEL------------------TLADYFKAH-------NMK---Y-----H--P--------------- 173 (342)
Q Consensus 148 ----I~v~~GTT~e~------------------~l~~~~~~~-------~~~---~-----~--~--------------- 173 (342)
|-.-+|||+-. ||+.++-.. |+. + + +
T Consensus 624 nsVpv~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMIqE~~~d~vSGlsD~KfqrP~dq~PpFRFGTVpngSTE~ni 703 (1258)
T KOG1053 624 NSVPVENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEEYYDTVSGLSDPKFQRPHDQYPPFRFGTVPNGSTERNI 703 (1258)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 87688899731889999999999999999988778888763301212046674012686445898410047898446667
Q ss_pred -----------E--EECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCCHHHH
Q ss_conf -----------8--74798999999873960299825047999998367800100256--44423710100027775799
Q gi|254780170|r 174 -----------I--VFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGDTEWY 238 (342)
Q Consensus 174 -----------v--~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD~~w~ 238 (342)
+ --...++++..|.+|+.|||+.|...|-.+...-.+ -+.+.+. ..++.+=||++++| |+-|.
T Consensus 704 R~Nyp~MHeYM~kyNq~~v~dal~sLK~gKLDAFIyDaAVLnY~agkDeg-CKLvTIGsgKvFAttGYGIal~k-~Spwk 781 (1258)
T KOG1053 704 RSNYPEMHEYMVKYNQPGVEDALESLKNGKLDAFIYDAAVLNYMAGKDEG-CKLVTIGSGKVFATTGYGIALPK-NSPWK 781 (1258)
T ss_pred HHCCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC-CEEEEECCCCEEEECCEEEECCC-CCCCH
T ss_conf 75509999999985667608899987616601677888887776335779-64898327735654020340389-99504
Q ss_pred HHHHHHH
Q ss_conf 9988774
Q gi|254780170|r 239 NIVSWTH 245 (342)
Q Consensus 239 d~V~W~~ 245 (342)
.-|.-.+
T Consensus 782 r~Idlal 788 (1258)
T KOG1053 782 RQIDLAL 788 (1258)
T ss_pred HHHHHHH
T ss_conf 4678999
No 25
>COG3181 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.58 E-value=4.2e-06 Score=58.97 Aligned_cols=245 Identities=18% Similarity=0.189 Sum_probs=134.9
Q ss_pred EEHHHHHHHHHHHH---CCCCCEEEEEECCCCC----CHHHHHCCCEEEEEECCCCCCC---CHHC--CC-CCCCCC--C
Q ss_conf 15099999999996---7982202599814310----0267743962799812432532---0110--27-843532--2
Q gi|254780170|r 58 GFDVDFCRALSSAI---FDDPSKIQYLPLNAKE----RFLALQSKQIDILSRNTDWTLL---REIS--LG-LAFRPI--T 122 (342)
Q Consensus 58 GfDVDl~raiAaal---~gd~~kVe~v~~~~~~----rf~aL~sG~vDil~~~~T~T~~---Rd~~--~~-v~Fs~~--~ 122 (342)
|+|+ +||+++..+ ++.+..|+.+|-..-. .+..-..|.-..++.+.+.... .... +. =||.++ .
T Consensus 41 g~D~-~aR~~~~~l~k~lg~~v~V~N~pGagG~ia~~~va~a~pG~t~~l~~~~~~~~~~~~~~~~~~~~~~D~~pva~v 119 (319)
T COG3181 41 GTDQ-TARALAESLSKELGQPVVVDNKPGAGGAIAAGAVAKAAPGYTILLIAGSTPALLLPILGGLPYYKLKDFTPVASL 119 (319)
T ss_pred HHHH-HHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHCCCCCCCHHHCEEHHHE
T ss_conf 5889-999999999998089779995588731688999984589984488734764322154426888854423003311
Q ss_pred CCCCEEEEEECCCCCCCHHHHC-------CCCEEEEEC--CCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEE
Q ss_conf 3440234630211347536417-------862034313--4269999999986299850787479899999987396029
Q gi|254780170|r 123 YFDGQGFIMHKKKGISSVSQLS-------GASICVQAG--TTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDA 193 (342)
Q Consensus 123 ~~dgq~~lVrk~~~i~s~~dL~-------G~~I~v~~G--TT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA 193 (342)
..+...|+|++++.+++++||- |..++-..| |..+.....+++..+++++.|+|+...++..+|..|++|+
T Consensus 120 ~~~p~~l~v~~~s~~~t~~dlv~~~k~~p~~v~~~~~g~Gs~dhl~~~~~~k~~Gi~~~~Vpy~g~gea~taLlgg~v~a 199 (319)
T COG3181 120 VSDPGVLVVRADSPYKTLKDLVAYAKADPGSVIGGGSGLGSADHLAGALFAKAAGIKITYVPYKGGGEALTALLGGHVDA 199 (319)
T ss_pred ECCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCEEE
T ss_conf 13661599817887366999999998599808954788895889999999997389625774168648789986086654
Q ss_pred EEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCE--EEECCCCCHHHHHHHHHHHHHHHHHH---HHHCCHHHHHHHHHCC
Q ss_conf 982504799999836780010025644423710--10002777579999887744331121---2330152089886226
Q gi|254780170|r 194 YTGDISALYALKLTNDRPSEHVILPDIISKSPL--APAIIQGDTEWYNIVSWTHYAMVTAE---ELGITQKNINQVSKDT 268 (342)
Q Consensus 194 ~~~D~s~La~~~~~~~~p~~~~il~e~iskEPl--g~avr~gD~~w~d~V~W~~~ali~Ae---e~git~~nv~~~~~~s 268 (342)
.+++.+.+...-. .++.+.|. .+|.|-+ -|-++-=.++=.+++ |...-.|.|- .--+.+...+.+.+-.
T Consensus 200 ~~~~~se~~~~vk----sG~lr~La-v~s~eRl~~~pdvPT~~E~G~~~~-~~~wrgvfap~g~~~e~~~~~~~a~kk~l 273 (319)
T COG3181 200 GSTNLSELLSQVK----SGTLRLLA-VFSEERLPGLPDVPTLKEQGYDVV-MSIWRGVFAPAGTPDEIIAKLSAALKKAL 273 (319)
T ss_pred EECCHHHHHHHHC----CCCEEEEE-EECHHHCCCCCCCCCHHHCCCCEE-EEEEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 4367124355630----57467877-534310677999998676387546-64435898079999999999999999986
Q ss_pred CCHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHCCCHHHHHHH
Q ss_conf 71778876235887650333799867999999971869998788
Q gi|254780170|r 269 TNPDVQRFLGIDKSSNIGEALGLTKDWTYRIIRHMGNYGEMFDR 312 (342)
Q Consensus 269 ~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~~i~~vGNYgei~~r 312 (342)
.+|+.++.+-- ...-..--=+.+|...|=++.-.|+|++..
T Consensus 274 ~s~e~~~~~~~---~~~~~~~~~~eel~a~i~~~~~~~~~~~k~ 314 (319)
T COG3181 274 ASPEWQKRLKE---LGLVPSYLTGEELKAYIEKEIARWGELVKA 314 (319)
T ss_pred CCHHHHHHHHH---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 39889999985---588875579899999999999999999986
No 26
>COG2358 Imp TRAP-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=98.55 E-value=4.7e-07 Score=64.99 Aligned_cols=153 Identities=18% Similarity=0.211 Sum_probs=96.6
Q ss_pred CEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCC-CCHHHHHCCCEEEEEECCCCCC----
Q ss_conf 94999871789883068898988015099999999996798220259981431-0026774396279981243253----
Q gi|254780170|r 34 GFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAK-ERFLALQSKQIDILSRNTDWTL---- 108 (342)
Q Consensus 34 G~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~-~rf~aL~sG~vDil~~~~T~T~---- 108 (342)
..+++|+... .|.+-=+-..||+.+....-+ .+++-++...+ .-...+++|++|+.+-..-+-.
T Consensus 26 ~~itigTG~~---------~G~YY~ig~~ia~~~~~~~~~--i~~~v~~tggSv~Nl~~i~~Ge~d~alvq~d~a~~ay~ 94 (321)
T COG2358 26 KFITIGTGST---------GGVYYPIGGGLAQLLNKDEKG--IECSVVPTGGSVENLKLLASGEADLALVQSDVAYEAYN 94 (321)
T ss_pred EEEEEEECCC---------CCEEEEHHHHHHHHHHCCCCC--EEEEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 3799960699---------862230378999998514778--18999606542999986753762535666789999871
Q ss_pred ------CCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEE-ECCCHHHHHHHHHHHCCCCCCEEEE-CCH-
Q ss_conf ------2011027843532234402346302113475364178620343-1342699999999862998507874-798-
Q gi|254780170|r 109 ------LREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQ-AGTTTELTLADYFKAHNMKYHPIVF-ERV- 179 (342)
Q Consensus 109 ------~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~-~GTT~e~~l~~~~~~~~~~~~~v~~-~~~- 179 (342)
.....+.+....++|-.--.+++|++++|++++||+||||.+- .||.++.++...++..|+....... ...
T Consensus 95 G~g~f~~~~~~~~lr~v~~lype~~~vv~r~d~~Ikti~DL~GKrV~iG~~gSgt~~~a~~il~a~Gi~~~~~~~~~~~~ 174 (321)
T COG2358 95 GTGSFEGKGKDENLRAVAALYPEPFHVVTRKDAGIKTIADLKGKRVAIGPPGSGTEATARQILEALGITYDDYELDLGLG 174 (321)
T ss_pred CCCCCCCCCCCCCHHHHEECCCCEEEEEEECCCCCCEEHHCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHCC
T ss_conf 85311456655143322130542089999668896560103898886269997408899999997399976245666337
Q ss_pred -HHHHHHHHCCCEEEEEEC
Q ss_conf -999999873960299825
Q gi|254780170|r 180 -EEIDAAYRAHRCDAYTGD 197 (342)
Q Consensus 180 -~~a~~al~~Gr~DA~~~D 197 (342)
.++..++.+|.+||++.=
T Consensus 175 ~a~~~~~l~~g~iDA~~~~ 193 (321)
T COG2358 175 DAESADALKNGTIDAAFYV 193 (321)
T ss_pred CHHHHHHHHCCCCCEEEEE
T ss_conf 3065787637963289981
No 27
>COG4521 TauA ABC-type taurine transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=98.51 E-value=2.9e-06 Score=59.98 Aligned_cols=175 Identities=19% Similarity=0.203 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 99999999999840124421689998579499987178988306889898801509999999999679822025998143
Q gi|254780170|r 6 FVSILCLIILFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNA 85 (342)
Q Consensus 6 l~~~l~l~~~~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~ 85 (342)
+..++++++..+++.++++- .++||..+..-|+-....+| +.++..+ .++.|...++
T Consensus 10 l~~~~aa~a~~l~~~~Aqa~---------~vtVgYQt~~eP~kvaqADg-----------~~aK~~g---atiDWRkFdS 66 (334)
T COG4521 10 LSSLLAALAFVLLAFAAQAV---------DVTVGYQTSAEPAKVAQADG-----------AFAKESG---ATIDWRKFDS 66 (334)
T ss_pred HHHHHHHHHHHHHHHHHHCC---------EEEEEEEECCCCCCCCCCCC-----------HHHHHCC---CCCCHHHCCC
T ss_conf 88899999988767664223---------16886540357520213463-----------5677607---8545110475
Q ss_pred -CCCHHHHHCCCEEEEEECCCC---CCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHH
Q ss_conf -100267743962799812432---5320110278435322344023463021134753641786203431342699999
Q gi|254780170|r 86 -KERFLALQSKQIDILSRNTDW---TLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLA 161 (342)
Q Consensus 86 -~~rf~aL~sG~vDil~~~~T~---T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~ 161 (342)
.+.+.+|.||.+++---+.|. -.+|..-..+-|..-..-....++||++++|..++||.||+|+|.-=||++--|-
T Consensus 67 G~~vv~AlASGdvqiG~iGSsplaaAaSr~vpie~f~~~~~ig~sEALVvr~gsgI~kpeDL~GK~iavPFvSTtHysLL 146 (334)
T COG4521 67 GASIVRALASGDVQIGNIGSSPLAAAASRQVPIEVFLLASQIGNSEALVVRKGSGIEKPEDLIGKRIAVPFVSTTHYSLL 146 (334)
T ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCEEEEEHHHHCCCCCEEEEECCCCCCCHHHHCCCEECCCEEEHHHHHHH
T ss_conf 36899998628861046578566677635886588530121286310355237786985786467210424300089999
Q ss_pred HHHHHCCCCC---CEEEECCHHHHHHHHHCCCEEEEEECCHHHHHH
Q ss_conf 9998629985---078747989999998739602998250479999
Q gi|254780170|r 162 DYFKAHNMKY---HPIVFERVEEIDAAYRAHRCDAYTGDISALYAL 204 (342)
Q Consensus 162 ~~~~~~~~~~---~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~ 204 (342)
..++.-+++- +++- =...+..+|.+-|.+|+-..=.+.|-.+
T Consensus 147 aaLkhw~idp~~V~IlN-l~Pp~IaAAwqRGDIDgAyVW~PAl~el 191 (334)
T COG4521 147 AALKHWGIDPGQVEILN-LQPPAIAAAWQRGDIDGAYVWAPALSEL 191 (334)
T ss_pred HHHHHCCCCCCCEEEEC-CCCHHHHHHHHCCCCCCEEECCHHHHHH
T ss_conf 99987187855246861-5978999998707877225446768888
No 28
>KOG4440 consensus
Probab=98.50 E-value=6.8e-07 Score=63.97 Aligned_cols=188 Identities=18% Similarity=0.204 Sum_probs=127.8
Q ss_pred EEEHHHHHHHHHHHHC-------------CCCCEE----EEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCC
Q ss_conf 0150999999999967-------------982202----59981431002677439627998124325320110278435
Q gi|254780170|r 57 KGFDVDFCRALSSAIF-------------DDPSKI----QYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFR 119 (342)
Q Consensus 57 ~GfDVDl~raiAaal~-------------gd~~kV----e~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs 119 (342)
.||-|||.-.++..+- |....| +-...+|...+-.|.+++.|++++..|+++||+ .-++|+
T Consensus 463 ~G~cIDLLi~Ls~~~Nftyd~~l~~dg~fg~~~~vnnsseT~~kew~G~iGEL~~~~ADMivaplTINpERa--~yieFs 540 (993)
T KOG4440 463 YGFCIDLLIKLSRTMNFTYDVHLVADGKFGTQERVNNSSETNKKEWNGMIGELLSGQADMIVAPLTINPERA--QYIEFS 540 (993)
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEEECCCCCCEEEEECCCCCCCCEEHHHHHHHHCCCCCEEEECEEECHHHH--HHEECC
T ss_conf 688999999998862563668886446565167640455323514111124440785553761101372245--442226
Q ss_pred CCCCCCCEEEEEECCCCCCCHHH------------------------------------------------HC-------
Q ss_conf 32234402346302113475364------------------------------------------------17-------
Q gi|254780170|r 120 PITYFDGQGFIMHKKKGISSVSQ------------------------------------------------LS------- 144 (342)
Q Consensus 120 ~~~~~dgq~~lVrk~~~i~s~~d------------------------------------------------L~------- 144 (342)
.|+.|-|-.++.+|...-+++.. |+
T Consensus 541 kPfkYqGitILeKk~~r~Stl~SFlQPfqstLW~lv~~SVhvVal~lYlLDrfSPFgRFk~~ds~~~ee~alnlssAmWF 620 (993)
T KOG4440 541 KPFKYQGITILEKKEIRRSTLDSFLQPFQSTLWLLVGLSVHVVALMLYLLDRFSPFGRFKVNDSEEEEEDALNLSSAMWF 620 (993)
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHCCHHHHHHH
T ss_conf 75101566898507898744888876777779999999999999999998714864324415676425552352465888
Q ss_pred --------CC------------------------------------------------------------CEEEEECCCH
Q ss_conf --------86------------------------------------------------------------2034313426
Q gi|254780170|r 145 --------GA------------------------------------------------------------SICVQAGTTT 156 (342)
Q Consensus 145 --------G~------------------------------------------------------------~I~v~~GTT~ 156 (342)
|. +-+...+|.-
T Consensus 621 ~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFLVLdrPe~~ltGinDpRLRNps~nf~~aTVk~SsV 700 (993)
T KOG4440 621 SWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLDRPEERLTGINDPRLRNPSDNFIYATVKQSSV 700 (993)
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHEEEHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCH
T ss_conf 76766436667899753137788888752420200252310143123247210366788711168311316887317508
Q ss_pred HHHHHHHHHHC------CCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEEC
Q ss_conf 99999999862------998507874798999999873960299825047999998367800100256444237101000
Q gi|254780170|r 157 ELTLADYFKAH------NMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAI 230 (342)
Q Consensus 157 e~~l~~~~~~~------~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~av 230 (342)
.-||+.+ .-+.++--|++.+|+++++..|+.+|++=|.+.|.-..++ .-+.+.-.|.|-+.-||+.+
T Consensus 701 ----d~YFrRqVELS~MyR~ME~hNy~~A~eAiq~v~~gkL~AFIWDS~rLEfEAs~---~CeLvT~GeLFgRSgyGIGl 773 (993)
T KOG4440 701 ----DIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDGKLHAFIWDSARLEFEASQ---KCELVTTGELFGRSGYGIGL 773 (993)
T ss_pred ----HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEECCCEEEHHHC---CCEEEECCCCCCCCCCCCCC
T ss_conf ----89988886788888763200245599999998749616898503103320204---64067511201534443103
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 277757999988774433112123301
Q gi|254780170|r 231 IQGDTEWYNIVSWTHYAMVTAEELGIT 257 (342)
Q Consensus 231 r~gD~~w~d~V~W~~~ali~Aee~git 257 (342)
+| |+-|.+-|. -|+..-.|.|+-
T Consensus 774 qK-~SPWt~~vt---laIL~~hEsGfM 796 (993)
T KOG4440 774 QK-DSPWTQNVT---LAILKSHESGFM 796 (993)
T ss_pred CC-CCCCCHHHH---HHHHHHHHHHHH
T ss_conf 56-999730357---999886131067
No 29
>pfam03401 Bug Tripartite tricarboxylate transporter family receptor. These probable extra-cytoplasmic solute receptors are strongly overrepresented in several beta-proteobacteria. This family, formerly known as Bug - Bordetella uptake gene (bug) product - is a family of bacterial tripartite tricarboxylate receptors of the extracytoplasmic solute binding receptor-dependent transporter group of families, distinct from the ABC and TRAP-T families. The TctABC system has been characterized in S. typhimurium, and TctC is the extracytoplasmic tricarboxylate-binding receptor which binds the transporters TctA and TctB, two integral membrane proteins. Complete three-component systems are found only in bacteria.
Probab=98.31 E-value=4.7e-06 Score=58.65 Aligned_cols=223 Identities=14% Similarity=0.184 Sum_probs=121.8
Q ss_pred HHHHHHHH---CCCCCEEEEEECCCCC-CHHHHHCCCEE---EEEECCCC--CCC--CHHCCC--CCCCCC--CCCCCEE
Q ss_conf 99999996---7982202599814310-02677439627---99812432--532--011027--843532--2344023
Q gi|254780170|r 64 CRALSSAI---FDDPSKIQYLPLNAKE-RFLALQSKQID---ILSRNTDW--TLL--REISLG--LAFRPI--TYFDGQG 128 (342)
Q Consensus 64 ~raiAaal---~gd~~kVe~v~~~~~~-rf~aL~sG~vD---il~~~~T~--T~~--Rd~~~~--v~Fs~~--~~~dgq~ 128 (342)
+|.+|..+ +|.+.-|+-+|-.... -...+.+-+-| +++.+++. ++. ++..+. -||.+. ...+...
T Consensus 2 AR~~a~~l~~~lG~~vvV~N~pGagG~ig~~~v~~a~~DGyTl~~~~~~~~~~~~~~~~~~~~~~~df~pia~~~~~~~~ 81 (274)
T pfam03401 2 ARALAQGMSKQLGQPVIVENKPGAGGIIGADAVAKAAPDGYTILLGSTGLAVAPHLYPNLPYDPIKDFTPVSLLATSPMV 81 (274)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEE
T ss_conf 78999999998699879996698306999999980899998899946789876888434788708876758865016358
Q ss_pred EEEECCCCCCCHHHHC-------C-CCEEEE-ECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCH
Q ss_conf 4630211347536417-------8-620343-134269999999986299850787479899999987396029982504
Q gi|254780170|r 129 FIMHKKKGISSVSQLS-------G-ASICVQ-AGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDIS 199 (342)
Q Consensus 129 ~lVrk~~~i~s~~dL~-------G-~~I~v~-~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s 199 (342)
++|++++++++++||- | .+++.. .||..+.....+.+..+++++.|+|+...+++.++..|++|+.+...+
T Consensus 82 l~v~~dsp~~t~~dli~~ak~~Pg~~~~g~~G~gs~~hl~~~~l~~~~G~~~~~Vpy~G~~~~~~allgG~vd~~~~~~~ 161 (274)
T pfam03401 82 LVVPADSPFKTLQELVAYAKANPGKLTFASAGIGTSNHLAGELLASKAGVQLSHVPYKGSSPALQDLLGGRVDMMIDSLT 161 (274)
T ss_pred EEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCEEEEEEECCH
T ss_conf 89779997568999999998489965873278886318999999997099648834678326689986784459983513
Q ss_pred HHHHHHHHCCCCHHHCCC-----------CCCCC-CC----------CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 799999836780010025-----------64442-37----------101000277757999988774433112123301
Q gi|254780170|r 200 ALYALKLTNDRPSEHVIL-----------PDIIS-KS----------PLAPAIIQGDTEWYNIVSWTHYAMVTAEELGIT 257 (342)
Q Consensus 200 ~La~~~~~~~~p~~~~il-----------~e~is-kE----------Plg~avr~gD~~w~d~V~W~~~ali~Aee~git 257 (342)
...... ..++.++| |+.=+ +| ..|++.++|=| .+++.+.-
T Consensus 162 ~~~~~v----~~G~lr~Lav~~~~R~~~~PdVPT~~E~G~~~~~~~~w~g~~ap~gtP--~~~~~~l~------------ 223 (274)
T pfam03401 162 STAPYI----KAGKLRALAVTSPKRSPQLPDVPTVAELGLKGFEAGVWFGLVAPKGTP--PAVVEKLN------------ 223 (274)
T ss_pred HHHHHH----CCCCCEEEEEECCCCCCCCCCCCCHHHHCCCCCEEEEEEEEEECCCCC--HHHHHHHH------------
T ss_conf 204454----179825999975756754489997688487871478888876349889--99999999------------
Q ss_pred HHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHCCCHHHHHH
Q ss_conf 520898862267177887623588765033379986799999997186999878
Q gi|254780170|r 258 QKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYRIIRHMGNYGEMFD 311 (342)
Q Consensus 258 ~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~~i~~vGNYgei~~ 311 (342)
+.+.+-..||+.+.++-. . ++-...-=+.+|...+-++.-.|+++-.
T Consensus 224 ----~a~~~~~~dpe~~~~~~~--~-g~~~~~~~~~e~~~~~~~e~~~~~~l~k 270 (274)
T pfam03401 224 ----DAIKKALKDPEVVERLAN--L-GMEPVPGTPQQLAQFIQAEVKRWGPLIQ 270 (274)
T ss_pred ----HHHHHHHCCHHHHHHHHH--C-CCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf ----999999749999999997--7-8957889999999999999999999999
No 30
>KOG1054 consensus
Probab=98.21 E-value=2.2e-06 Score=60.71 Aligned_cols=104 Identities=17% Similarity=0.093 Sum_probs=78.3
Q ss_pred HHHHHHCCEEEEEEECCCCCCEEE-C-----CCCCEEEEHHHHHHHHHHHHCCCCCEEEEEE----------C-CCCCCH
Q ss_conf 899985794999871789883068-8-----9898801509999999999679822025998----------1-431002
Q gi|254780170|r 27 LGDIKKRGFLKCGINTGLVGFAEV-K-----ANGDWKGFDVDFCRALSSAIFDDPSKIQYLP----------L-NAKERF 89 (342)
Q Consensus 27 Ld~Vk~rG~L~vGv~~~~ppfs~~-d-----~~G~~~GfDVDl~raiAaal~gd~~kVe~v~----------~-~~~~rf 89 (342)
-..++.|-+++-++-. .|+.-++ + .+.++.||-|||+..||+.+.. .-++.+++ . -|+..+
T Consensus 411 ~~~~~n~tvvvttiL~-spyvm~kkn~~~~egn~ryEGyCvdLa~~iAkhi~~-~Y~l~iv~dgkyGardaD~k~WnGMv 488 (897)
T KOG1054 411 QASKENRTVVVTTILE-SPYVMLKKNHEQLEGNERYEGYCVDLAAEIAKHIGI-KYKLFIVGDGKYGARDADTKIWNGMV 488 (897)
T ss_pred CCCCCCCEEEEEEECC-CCHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHCCC-EEEEEEECCCCCCCCCCCCCCCCCHH
T ss_conf 1014665289997137-954577754777317764313389999999975074-17899923776566688764113346
Q ss_pred HHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 677439627998124325320110278435322344023463021
Q gi|254780170|r 90 LALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKK 134 (342)
Q Consensus 90 ~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~ 134 (342)
-.|..|+.|+.++..|+|++||.. +|||.|....|-.+|.+|-
T Consensus 489 GeLv~grAdiavApLTIt~~REev--iDFSKPfMslGISIMIKKP 531 (897)
T KOG1054 489 GELVYGRADIAVAPLTITLVREEV--IDFSKPFMSLGISIMIKKP 531 (897)
T ss_pred HHHHCCCCCEEEEEEEEEHHHHHH--HCCCCCHHHCCEEEEEECC
T ss_conf 787558433477223643012446--4246634442768998076
No 31
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein; InterPro: IPR010068 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry identifies a cluster of ABC transporter periplasmic substrate binding proteins, apparently specific for taurine. Transport systems for taurine (NH2-CH2-CH2-SO3H), sulphonates, and sulphate esters import sulphur when sulphate levels are low. The most closely related proteins outside this family are putative aliphatic sulphonate binding proteins..
Probab=98.19 E-value=6.7e-06 Score=57.69 Aligned_cols=158 Identities=20% Similarity=0.201 Sum_probs=107.8
Q ss_pred EEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCC-CCCHHHHHCCCEEEEEEC---CCCCCCCH
Q ss_conf 99987178988306889898801509999999999679822025998143-100267743962799812---43253201
Q gi|254780170|r 36 LKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNA-KERFLALQSKQIDILSRN---TDWTLLRE 111 (342)
Q Consensus 36 L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~-~~rf~aL~sG~vDil~~~---~T~T~~Rd 111 (342)
++||.-+-.-||-..-.||++.-| |+.-+ --|.|+..++ .+.+.||.||.|||-.=+ ++.-.+|+
T Consensus 1 vtvgYQ~~veP~kva~ADgrfda~--------aKe~g---aTiDWRkFdSGadi~~AlASG~V~IG~~GSsplaaAASr~ 69 (304)
T TIGR01729 1 VTVGYQTVVEPAKVAQADGRFDAY--------AKEAG---ATIDWRKFDSGADIVAALASGDVDIGVVGSSPLAAAASRE 69 (304)
T ss_pred CEEEEEECCCCCCCCCCCCCHHHH--------HHCCC---CEEEEEEECCHHHHHHHHHCCCCCCCCCCCCHHHHHHHCC
T ss_conf 966653020640033247622245--------43048---8020011044165555653386332222470789987268
Q ss_pred HCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHH-CCCCCC---EEEECCHHHHHHHHH
Q ss_conf 1027843532234402346302113475364178620343134269999999986-299850---787479899999987
Q gi|254780170|r 112 ISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKA-HNMKYH---PIVFERVEEIDAAYR 187 (342)
Q Consensus 112 ~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~-~~~~~~---~v~~~~~~~a~~al~ 187 (342)
--..+-|..-..=.+..+++|+.+||..++||.||+|+|-==||++-.|-.-+++ -+++-+ ++-. ..++..+|++
T Consensus 70 vpie~f~~~~~iG~SEALVar~g~GIeKpeDL~GK~vaVPFvSTtHysLLaaLk~vw~~dp~~V~IlNl-~PP~I~AAwq 148 (304)
T TIGR01729 70 VPIEVFLVVDKIGKSEALVAREGAGIEKPEDLKGKKVAVPFVSTTHYSLLAALKHVWKVDPKEVEILNL-KPPEIVAAWQ 148 (304)
T ss_pred CCEEEEEEECCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC-CCHHHHHHHH
T ss_conf 830020100102872002454367887666717884502751134589999888762678760578617-9657998754
Q ss_pred CCCEEEEEECCHHHHHHH
Q ss_conf 396029982504799999
Q gi|254780170|r 188 AHRCDAYTGDISALYALK 205 (342)
Q Consensus 188 ~Gr~DA~~~D~s~La~~~ 205 (342)
-|-+||-.-=.+.|-.+.
T Consensus 149 RGDIDaAYVW~PAl~~l~ 166 (304)
T TIGR01729 149 RGDIDAAYVWDPALSELK 166 (304)
T ss_pred CCCCCCCCCCHHHHHHHH
T ss_conf 388262103745688775
No 32
>COG1638 DctP TRAP-type C4-dicarboxylate transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=98.05 E-value=7.2e-05 Score=51.15 Aligned_cols=146 Identities=23% Similarity=0.256 Sum_probs=97.0
Q ss_pred CCCCEEE-EHHHHHHHHHHHHCCCCCEEEEEEC----CCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCC--
Q ss_conf 9898801-5099999999996798220259981----43100267743962799812432532011027843532234--
Q gi|254780170|r 52 ANGDWKG-FDVDFCRALSSAIFDDPSKIQYLPL----NAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYF-- 124 (342)
Q Consensus 52 ~~G~~~G-fDVDl~raiAaal~gd~~kVe~v~~----~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~-- 124 (342)
+.+.+.+ .-..+++.|..+..|+ .+|++-|- ...+.+.+|+.|.+|+.+.+...-..+....+ -|+-||.+
T Consensus 37 ~~~~p~~~~~~~fa~~v~ekt~G~-l~i~vfP~~qLG~~~~~ie~l~~G~id~~~~s~~~l~~~~P~~~-v~~lPflf~d 114 (332)
T COG1638 37 PEGHPKGKAAKKFAELVEEKTGGR-LKIEVFPNSQLGGEAEMIEQLRSGTLDIGVVSLGFLAGLVPEFG-VFDLPFLFRD 114 (332)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCE-EEEEECCCCCCCCHHHHHHHHHCCCCEEEECCCHHHCCCCCCCE-EECCCEEECC
T ss_conf 998807899999999999871993-89997667566876999999965973078506523211387501-2248755189
Q ss_pred --------------------------------CCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCC
Q ss_conf --------------------------------402346302113475364178620343134269999999986299850
Q gi|254780170|r 125 --------------------------------DGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYH 172 (342)
Q Consensus 125 --------------------------------dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~ 172 (342)
.|..-+..+...|++++||+|.+|-|+...+. .++|+.-|..-+
T Consensus 115 ~~~~~~~~~~~~g~~l~~~~e~~g~~~l~~~~~G~R~~t~~k~PI~~peDlkGlkiRv~~s~~~----~~~~~a~GA~P~ 190 (332)
T COG1638 115 EEHARRVLDSEFGEELLKSLEAKGLKGLAFWENGFRQFTSNKRPIKTPEDLKGLKIRVPQSPLL----LAMFKALGANPT 190 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCCCHHHHCCCEEECCCCHHH----HHHHHHCCCCCC
T ss_conf 9999999713889999999997695799986275223334678778968967984635898899----999998699897
Q ss_pred EEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHH
Q ss_conf 7874798999999873960299825047999998
Q gi|254780170|r 173 PIVFERVEEIDAAYRAHRCDAYTGDISALYALKL 206 (342)
Q Consensus 173 ~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~ 206 (342)
++ ...|.+.+|++|.+|+.-+..+...+.+.
T Consensus 191 pm---~f~Evy~aLqtGvVDGqEnp~~~i~~~k~ 221 (332)
T COG1638 191 PM---PFAEVYTALQTGVVDGQENPLSNIYSAKL 221 (332)
T ss_pred CC---CHHHHHHHHHCCCCCCCCCCHHHHHCCCH
T ss_conf 78---88999999974970044176766610426
No 33
>TIGR01728 SsuA_fam ABC transporter, substrate-binding protein, aliphatic sulfonates family; InterPro: IPR010067 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Members of this family are substrate-binding periplasmic proteins of ABC transporters. This subfamily includes SsuA, a member of a transporter operon needed to obtain sulphur from aliphatic sulphonates. Related proteins include taurine (NH2-CH2-CH2-S03H) binding proteins, the probable sulphate ester binding protein AtsR, and the probable aromatic sulphonate binding protein AsfC. All these families make sulphur available when Cys and sulphate levels are low.; GO: 0006790 sulfur metabolic process, 0006810 transport, 0016020 membrane.
Probab=97.98 E-value=5.2e-05 Score=52.04 Aligned_cols=176 Identities=19% Similarity=0.150 Sum_probs=111.2
Q ss_pred CCEEEEEECCC-CCCHHHHHCCCEEEEEECCCCCCCCHHCCC-CCCCCCCCCC----CEEEEEECCCCCCCHHHHCCCCE
Q ss_conf 22025998143-100267743962799812432532011027-8435322344----02346302113475364178620
Q gi|254780170|r 75 PSKIQYLPLNA-KERFLALQSKQIDILSRNTDWTLLREISLG-LAFRPITYFD----GQGFIMHKKKGISSVSQLSGASI 148 (342)
Q Consensus 75 ~~kVe~v~~~~-~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~-v~Fs~~~~~d----gq~~lVrk~~~i~s~~dL~G~~I 148 (342)
..||+++..+. ...+.+|.+|++|+-.-+-.....- ...+ .++-.+..+. ...++++++++|++++||+||+|
T Consensus 31 g~~~~~~~f~~g~~~~~~l~~g~~d~g~~g~~p~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~dlkGk~~ 109 (311)
T TIGR01728 31 GTKVEWVEFPGGPPELEALGAGSLDFGYIGPGPALNA-YAAGNADIKAVGLSSDGPSATALVVGKGSGIRSVKDLKGKRI 109 (311)
T ss_pred CCEEEEEEECCCHHHHHHHCCCCCCCCCCCCCHHEEE-CCCCCCCEEEEEEECCCCCCEEEEECCCCCCCHHHHCCCCEE
T ss_conf 6124788626754777752056500143367312010-003676467998525776403566336677301433477456
Q ss_pred EEEECCCHHHHHHHHHHHCC------CCCC--EEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--
Q ss_conf 34313426999999998629------9850--7874798999999873960299825047999998367800100256--
Q gi|254780170|r 149 CVQAGTTTELTLADYFKAHN------MKYH--PIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILP-- 218 (342)
Q Consensus 149 ~v~~GTT~e~~l~~~~~~~~------~~~~--~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~-- 218 (342)
|+..|+..+..+...+...+ +..+ .+..-...++..+|..|.+||+..-.+-+..... ..+ ..+++.
T Consensus 110 a~~~g~~~~~~~~~~l~~~ggl~~~~~~~~d~~~~~~~~~~~~~a~~~g~~da~~~~~P~~~~~~~--~~~-~~~~~~~~ 186 (311)
T TIGR01728 110 AVPKGGSGHDLLLRALLKAGGLEDNLLSGDDVDILELGPSDARAALAAGQVDAWGIWEPWLSALVE--EGG-ARVLLNGE 186 (311)
T ss_pred EEECCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCEEECCCCCHHHHHH--HCC-CEEEEECC
T ss_conf 630666157899999997347200036876315540260456776540462212116871445432--226-24786145
Q ss_pred CCCCCC--CEEEECCCC--CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 444237--101000277--757999988774433112123
Q gi|254780170|r 219 DIISKS--PLAPAIIQG--DTEWYNIVSWTHYAMVTAEEL 254 (342)
Q Consensus 219 e~iskE--Plg~avr~g--D~~w~d~V~W~~~ali~Aee~ 254 (342)
...+.+ +.+..+-.. -.+|-+.|.-.+.....|..+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 226 (311)
T TIGR01728 187 GIGLPEWLVPGFLVVREEFAEEHPEQVERLLKVLVKATKW 226 (311)
T ss_pred CCCCCCCCCCEEEEECHHHHHHCHHHHHHHHHHHHHHHHH
T ss_conf 6576531012003420678751548899999999999998
No 34
>smart00079 PBPe Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Prokaryotic homologues are represented by a separate alignment: PBPb
Probab=97.97 E-value=4.1e-05 Score=52.68 Aligned_cols=109 Identities=16% Similarity=0.097 Sum_probs=81.0
Q ss_pred CCCCHHHHCC---CCEEEEECCCHHHHHHHHHHHCCCC-----------CCEEEECCHHHHHHHHHCCCEEEEEECCHHH
Q ss_conf 3475364178---6203431342699999999862998-----------5078747989999998739602998250479
Q gi|254780170|r 136 GISSVSQLSG---ASICVQAGTTTELTLADYFKAHNMK-----------YHPIVFERVEEIDAAYRAHRCDAYTGDISAL 201 (342)
Q Consensus 136 ~i~s~~dL~G---~~I~v~~GTT~e~~l~~~~~~~~~~-----------~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~L 201 (342)
.|+|++||.. .+.|+..|+.++..+ +..... -.-..+++.++.++...+|+ .|++.|.+.|
T Consensus 1 pI~s~~DL~~q~~i~yGtv~~ss~~~fF----~~s~~~~y~~mw~~m~~~~~~~v~~~~eGv~rv~~g~-yAfi~e~~~l 75 (134)
T smart00079 1 PITSVEDLAKQTKIEYGTIRGSSTLAFF----KRSGNPEYSRMWNYMSASPSVFVKSYAEGVQRVRVSN-YAFLMESTYL 75 (134)
T ss_pred CCCCHHHHHCCCCCEEEEECCCHHHHHH----HHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCC-CEEECCCHHH
T ss_conf 9799899842887201687896389998----8778658999999986285556677899999998078-2355051478
Q ss_pred HHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999836780010025644423710100027775799998877443311212330
Q gi|254780170|r 202 YALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEELGI 256 (342)
Q Consensus 202 a~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~gi 256 (342)
..... ++-+...+++.|.+++||+++++| +.|++.++. ++....|.|+
T Consensus 76 ~y~~~---~~C~l~~vG~~f~~~~ygia~~kg-Sp~~~~is~---~Il~l~e~G~ 123 (134)
T smart00079 76 DYELS---QNCDLMTVGENFGRKGYGIAFPKG-SPLRDDLSR---AILKLSESGE 123 (134)
T ss_pred HHHHC---CCCCEEEECEEEECCCEEEEECCC-CHHHHHHHH---HHHHHHHCCH
T ss_conf 99860---678748953066415457883399-814999999---9999885787
No 35
>pfam00060 Lig_chan Ligand-gated ion channel. This family includes the four transmembrane regions of the ionotropic glutamate receptors and NMDA receptors.
Probab=97.80 E-value=0.00017 Score=48.80 Aligned_cols=165 Identities=16% Similarity=0.088 Sum_probs=99.4
Q ss_pred EEEEEC--CCCCCCHHHHCCC---CEEEEECCCHHHHHHHH--------HHHCCCCCCEEEECCHHHHHHHHHCCC-EEE
Q ss_conf 346302--1134753641786---20343134269999999--------986299850787479899999987396-029
Q gi|254780170|r 128 GFIMHK--KKGISSVSQLSGA---SICVQAGTTTELTLADY--------FKAHNMKYHPIVFERVEEIDAAYRAHR-CDA 193 (342)
Q Consensus 128 ~~lVrk--~~~i~s~~dL~G~---~I~v~~GTT~e~~l~~~--------~~~~~~~~~~v~~~~~~~a~~al~~Gr-~DA 193 (342)
++|+.. ...|++++||... ++++..+++.+....+- .......-....+++.+++++.+.+|+ ++|
T Consensus 91 a~Lt~~~~~~~I~~i~dL~~~~~~~~g~~~~~~~~~~f~~s~~~~~~~~~~~~~~~~~~~~~~~~~egi~~v~~g~~~~A 170 (270)
T pfam00060 91 AFLTVERMQSPIQSLEDLAKQNKIGYGTLRGGSTFEFFKESKNPTYRRMWEYMISFKGEVNVESYEEGVQRVRKGNGLYA 170 (270)
T ss_pred HHHHCCCCCCCCCCHHHHHHCCCCCEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCEE
T ss_conf 99731334777578999986798731114076167777861430688999998750666777899999999865886289
Q ss_pred EEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHH
Q ss_conf 98250479999983678001002564442371010002777579999887744331121233015208988622671778
Q gi|254780170|r 194 YTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDV 273 (342)
Q Consensus 194 ~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i 273 (342)
++.|.+.|..... .++-++.++++.+..+++|++++|| +.|++.++. ++..--|.|+-..--+.-.. ..|+-
T Consensus 171 ~i~e~~~l~~~~~--~~~c~l~~vg~~f~~~~~g~a~~k~-Sp~~~~~s~---~il~l~E~G~l~~l~~kW~~--~~~~C 242 (270)
T pfam00060 171 FLMESAYLEYEVA--RDCCKLTTVGEVFGTKGYGIAFPKG-SPLRDKLSR---AILELRESGELQKLENKWWK--KKGEC 242 (270)
T ss_pred EEECHHHHHHHHH--HCCCCCEEECCCCCCCCEEEEECCC-CCHHHHHHH---HHHHHHHCCHHHHHHHHHCC--CCCCC
T ss_conf 9952588999997--0487627805311457546885189-930999999---99998726789999986458--99999
Q ss_pred HHHHCCCCCCCCHHHCCCCHHHHHHHHHHCC
Q ss_conf 8762358876503337998679999999718
Q gi|254780170|r 274 QRFLGIDKSSNIGEALGLTKDWTYRIIRHMG 304 (342)
Q Consensus 274 ~r~lg~~~~~~~g~~lgl~~~~~~~~i~~vG 304 (342)
..+....-...|||++=|-.=+|--+|
T Consensus 243 ----~~~~~~~~~~~l~l~~~~GlF~il~~G 269 (270)
T pfam00060 243 ----SSKSTAVSSSQLGLESFAGLFLILGIG 269 (270)
T ss_pred ----CCCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf ----998877778852747767568774155
No 36
>pfam03480 SBP_bac_7 Bacterial extracellular solute-binding protein, family 7. This family of proteins are involved in binding extracellular solutes for transport across the bacterial cytoplasmic membrane. This family includes a C4-dicarboxylate-binding protein and the sialic acid-binding protein SiaP. The structure of the SiaP receptor has revealed an overall topology similar to ATP binding cassette ESR (extracytoplasmic solute receptors) proteins. Upon binding of sialic acid, SiaP undergoes domain closure about a hinge region and kinking of an alpha-helix hinge component.
Probab=97.79 E-value=0.00029 Score=47.32 Aligned_cols=138 Identities=21% Similarity=0.253 Sum_probs=82.1
Q ss_pred EHHHHHHHHHHHHCCCCCEEEEEEC----CCCCCHHHHHCCCEEEEEECCCCCCCCHHCC--------------------
Q ss_conf 5099999999996798220259981----4310026774396279981243253201102--------------------
Q gi|254780170|r 59 FDVDFCRALSSAIFDDPSKIQYLPL----NAKERFLALQSKQIDILSRNTDWTLLREISL-------------------- 114 (342)
Q Consensus 59 fDVDl~raiAaal~gd~~kVe~v~~----~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~-------------------- 114 (342)
..-.+++.|.++-.|. .+|++.+. ...+.+.++++|.+|+......+...+....
T Consensus 13 ~~~~fa~~V~e~T~G~-v~i~~~~~g~L~~~~e~~~~v~~G~~d~~~~~~~~~~~~~p~~~~~~lP~~~~~~~~~~~~~~ 91 (285)
T pfam03480 13 AAEKFAKLVEEKTGGR-LKIEVYPNSQLGGDREVIEALKNGTVDIAAPSSGYFGGLPPEIGVFDLPFLFDDEQHLERVLD 91 (285)
T ss_pred HHHHHHHHHHHHCCCE-EEEEEECCCCCCCHHHHHHHHHCCCCCEEEECCHHHCCCCHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 9999999999877990-899995598758879999999779948897640222125712324527546798999999995
Q ss_pred --------------CCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHH
Q ss_conf --------------784353223440234630211347536417862034313426999999998629985078747989
Q gi|254780170|r 115 --------------GLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVE 180 (342)
Q Consensus 115 --------------~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~ 180 (342)
++-.-.. +..|...+.-.+..|++++||+|+||-+..+.+. .+++++-|. .++.. ...
T Consensus 92 ~~~~~~~~~~~~~~gv~~L~~-~~~g~~~~~~~~~pi~~~~DlkG~KiR~~~~~~~----~~~~~alGa--~pv~~-~~~ 163 (285)
T pfam03480 92 GEFGEALLKSLEAKGLKGLAF-WNNGFRQFTNNKKPINSPEDLKGLKLRVPPSPLL----GEVFKALGA--NPTPM-PFG 163 (285)
T ss_pred CHHHHHHHHHHHHCCCEEEEE-ECCCCEEEEECCCCCCCHHHHCCCEEEECCCHHH----HHHHHHCCC--CCCCC-CHH
T ss_conf 847899999999769689986-2688457522788889979967982883586799----999998599--74015-758
Q ss_pred HHHHHHHCCCEEEEEECCHHHHHHH
Q ss_conf 9999987396029982504799999
Q gi|254780170|r 181 EIDAAYRAHRCDAYTGDISALYALK 205 (342)
Q Consensus 181 ~a~~al~~Gr~DA~~~D~s~La~~~ 205 (342)
|.+.+|.+|.+|++.+..+.+.+.+
T Consensus 164 evy~aLq~GvvDg~~~~~~~~~~~~ 188 (285)
T pfam03480 164 EVYTALQTGVVDGQENPLSNIYSQK 188 (285)
T ss_pred HHHHHHHHCCEEEEECCCHHHHHHC
T ss_conf 8999997084626753713565404
No 37
>pfam04069 OpuAC Substrate binding domain of ABC-type glycine betaine transport system. Part of a high affinity multicomponent binding-protein-dependent transport system involved in bacterial osmoregulation. This domain is often fused to the permease component of the transporter complex. Family members are often integral membrane proteins or predicted to be attached to the membrane by a lipid anchor. Glycine betaine is involved in protection from high osmolarity environments for example in Bacillus subtilis. The family member OpuBC is closely related, and involved in choline transport. Choline is necessary for the biosynthesis of glycine betaine. L-carnitine is important for osmoregulation in Listeria monocytogenes. Family also contains proteins binding l-proline (ProX), histidine (HisX) and taurine (TauA).
Probab=97.71 E-value=0.00049 Score=45.86 Aligned_cols=131 Identities=22% Similarity=0.188 Sum_probs=81.4
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCC-CCHHHHHCCCEEEEEECCCCCCCC-----H---HCCCCCCCCCCCC-CCEEEEEE
Q ss_conf 999999996798220259981431-002677439627998124325320-----1---1027843532234-40234630
Q gi|254780170|r 63 FCRALSSAIFDDPSKIQYLPLNAK-ERFLALQSKQIDILSRNTDWTLLR-----E---ISLGLAFRPITYF-DGQGFIMH 132 (342)
Q Consensus 63 l~raiAaal~gd~~kVe~v~~~~~-~rf~aL~sG~vDil~~~~T~T~~R-----d---~~~~v~Fs~~~~~-dgq~~lVr 132 (342)
+.+.+-++.+ -+|+.+++... ..+.+|.+|+||+.... |++.. + ....+.-..+.++ +.+++.|+
T Consensus 19 i~~~~Le~~G---~~V~~~~~~~~~~~~~al~~G~iDi~~~~--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vp 93 (256)
T pfam04069 19 IAAQLLEALG---YVVELVGLGSTAVLFAALASGDIDLYPEE--WTGTTYEAYKKAVEEKLGLLVLGPLGAGNTYGLAVP 93 (256)
T ss_pred HHHHHHHHCC---CCEEEEECCCCHHHHHHHHCCCCCEEEHH--CCCCHHHHHHHHHHCCCCEEECCCCCCCCEEEEEEC
T ss_conf 9999999769---81698547870899999976997586333--066257999987514687386135777875899985
Q ss_pred CC----CCCCCHHHHCC----------CCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCH-----HHHHHHHHCCCEEE
Q ss_conf 21----13475364178----------6203431342699999999862998507874798-----99999987396029
Q gi|254780170|r 133 KK----KGISSVSQLSG----------ASICVQAGTTTELTLADYFKAHNMKYHPIVFERV-----EEIDAAYRAHRCDA 193 (342)
Q Consensus 133 k~----~~i~s~~dL~G----------~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~-----~~a~~al~~Gr~DA 193 (342)
+. .+|+|++||+. .-++...|..........++..|+.... .+... .+..+|+.+|++++
T Consensus 94 ~~~a~~~~i~si~dL~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~yGl~~~~-~~~~s~~~~~a~~~~A~~~g~~~v 172 (256)
T pfam04069 94 KYVAEKPGIKSISDLAKPADDELGFKGEFIGRPDGWGCTRSTEGLLKAYGLDKYE-LVEGSEAAMDALLYAAIKRGEPDV 172 (256)
T ss_pred HHHHHHCCCCCHHHHHCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCCEE-ECCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 8888356998799972742102488865532788854006789999863976401-235855545999999998499889
Q ss_pred EEECCH
Q ss_conf 982504
Q gi|254780170|r 194 YTGDIS 199 (342)
Q Consensus 194 ~~~D~s 199 (342)
+..=.+
T Consensus 173 ~~~w~p 178 (256)
T pfam04069 173 VYAWTP 178 (256)
T ss_pred EEECCC
T ss_conf 996376
No 38
>PRK00489 hisG ATP phosphoribosyltransferase; Reviewed
Probab=97.55 E-value=0.0011 Score=43.55 Aligned_cols=197 Identities=17% Similarity=0.136 Sum_probs=118.3
Q ss_pred EEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHC----CCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEE
Q ss_conf 0259981431002677439627998124325320110----278435322344023463021134753641786203431
Q gi|254780170|r 77 KIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREIS----LGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQA 152 (342)
Q Consensus 77 kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~----~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~ 152 (342)
.+++.-+-.++.-..+.+|.+|+.+.+.-+-.|.+.. ..+.|... --.+.++++..+++++||+|++|+
T Consensus 45 ~i~~~~~R~~DIp~yV~~G~~DlGI~G~D~l~E~~~~v~~~~~LgfG~c----rlvvAvP~~~~~~~~~dl~~~rIA--- 117 (287)
T PRK00489 45 PIEVLFLRPDDIPGYVADGVVDLGITGEDLLEESDADVEELLDLGFGKC----RLVLAVPEDSDYTGPEDLAGKRIA--- 117 (287)
T ss_pred CEEEEEECHHHHHHHHHCCCCCEEEEEEEEHHHCCCCCEEEECCCCCCE----EEEEEECCCCCCCCHHHHCCCEEE---
T ss_conf 8799998879899999769977755133121206898169970688748----999995177888995782785897---
Q ss_pred CCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCC
Q ss_conf 34269999999986299850787479899999987396029982504799999836780010025644423710100027
Q gi|254780170|r 153 GTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQ 232 (342)
Q Consensus 153 GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~ 232 (342)
|.+....++||.++|++++++.....-|.. -.-|-+|+++.=.+.=..++. +..+++.+.+..+..=++=+.
T Consensus 118 -Tkyp~it~~yf~~~Gi~~~iv~l~GavE~a--P~lGlAD~IvDivsTG~TL~~-----NgLk~ie~Il~S~A~LI~n~~ 189 (287)
T PRK00489 118 -TSYPNLTRRYLAEKGINARVVELSGAVEVA--PRLGLADAIVDLVSTGATLRA-----NGLKEVEVILRSEAVLIANKA 189 (287)
T ss_pred -ECHHHHHHHHHHHCCCCEEEEECCCCEECC--CCCCCCCEEEEEECCCHHHHH-----CCCEEEEEEEECEEEEEEECC
T ss_conf -300669999999869937999776723046--666810089997167487998-----799883577502359998077
Q ss_pred -CCHH---HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHH-CCCCCCCCHHHCCCCHHH
Q ss_conf -7757---99998877443311212330152089886226717788762-358876503337998679
Q gi|254780170|r 233 -GDTE---WYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFL-GIDKSSNIGEALGLTKDW 295 (342)
Q Consensus 233 -gD~~---w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~l-g~~~~~~~g~~lgl~~~~ 295 (342)
-|++ ..+.+---+.+-+.|..+-.-.-|+.. +.-.++..+| |.+ +..-..|+ +++|
T Consensus 190 ~~~~~k~~~i~~l~~ri~gvl~A~~~~~i~~Nvp~----~~l~~v~~~lPg~~--~PTi~pl~-~~~~ 250 (287)
T PRK00489 190 WWDPEKREKIDKLLTRIQGVLRARESKYLMMNAPK----EKLDAVTALLPGLE--SPTVSPLA-DEDW 250 (287)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCH----HHHHHHHHHCCCCC--CCCCCCCC-CCCE
T ss_conf 69867999999999999999977318999997877----77999998678888--98157047-9997
No 39
>PRK11119 proX glycine betaine transporter periplasmic subunit; Provisional
Probab=97.50 E-value=0.005 Score=39.49 Aligned_cols=176 Identities=13% Similarity=0.122 Sum_probs=95.7
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEE--EHHHHHHHHHHHHCCCCCEE
Q ss_conf 9138999999999999840124421689998579499987178988306889898801--50999999999967982202
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKG--FDVDFCRALSSAIFDDPSKI 78 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~G--fDVDl~raiAaal~gd~~kV 78 (342)
|++++++++.++++++.++.++.-+ -+-++++.+. + .|.+ |--.+.+.+=..++ -+|
T Consensus 2 ~~~~~l~~~a~~~~~~~~a~a~~~p-----g~g~tV~~a~----~---------~W~~~~a~t~v~~~~Le~lG---Y~V 60 (332)
T PRK11119 2 MRHKVLLATALATLISTSAFAADLP-----GKGITVQPAQ----S---------TIAEETFQTLLVSRALEKLG---YDV 60 (332)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCC-----CCCCEEEEEE----C---------CCHHHHHHHHHHHHHHHHCC---CCC
T ss_conf 1188899999999852276525589-----9997787601----6---------84089999999999999869---985
Q ss_pred E-EEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHC-------CCCCCCCCCCCCC-EEEEEECCC----CCCCHHHHC-
Q ss_conf 5-9981431002677439627998124325320110-------2784353223440-234630211----347536417-
Q gi|254780170|r 79 Q-YLPLNAKERFLALQSKQIDILSRNTDWTLLREIS-------LGLAFRPITYFDG-QGFIMHKKK----GISSVSQLS- 144 (342)
Q Consensus 79 e-~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~-------~~v~Fs~~~~~dg-q~~lVrk~~----~i~s~~dL~- 144 (342)
+ ..+++..-.|.+|.+|.+|+...+ |-+..+.. ..+.-..+++..+ +|++|.+.. +|++++||+
T Consensus 61 e~~~~~~~~~~~~ala~GdiD~~~~~--WlP~~~~~~~~~~~~~~~~~~g~~~~ga~~G~~V~~~~~d~~~I~si~dLkd 138 (332)
T PRK11119 61 NKPKEVDYNVFYTSIASGDATFTAVN--WFPLHDDQYEAAGGDKKFYREGVIVGGAAQGYLIDKKTADKYNITNIAQLKD 138 (332)
T ss_pred CCCEECCHHHHHHHHHCCCCEEEECC--CCCCCHHHHHHHCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCHHHHHC
T ss_conf 42014446889999855884486556--1765179999732776476424335665136895023321148578998628
Q ss_pred ------------CC--CEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHH-----HHHHHHHCCCEEEEEECCH
Q ss_conf ------------86--2034313426999999998629985078747989-----9999987396029982504
Q gi|254780170|r 145 ------------GA--SICVQAGTTTELTLADYFKAHNMKYHPIVFERVE-----EIDAAYRAHRCDAYTGDIS 199 (342)
Q Consensus 145 ------------G~--~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~-----~a~~al~~Gr~DA~~~D~s 199 (342)
|| -++...|...+......++..|+.......++.. +...++.+|+==.++.=.+
T Consensus 139 p~~a~~Fd~~~~GKg~i~g~~pGwg~~~~~~~~i~~ygL~~~~~~~~gs~~am~A~~~~a~~~~epiv~~~W~P 212 (332)
T PRK11119 139 PKIAKLFDTNGDGKADLTGCNPGWGCEAVINHQLKAYGLTDTVTHNQGNYAALMADTIARYKEGKPVLYYTWTP 212 (332)
T ss_pred HHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 67898607677885028814887206689999998679965054635648999999999998799989999677
No 40
>PRK09861 cytoplasmic membrane lipoprotein-28; Provisional
Probab=97.39 E-value=0.013 Score=36.82 Aligned_cols=194 Identities=12% Similarity=0.125 Sum_probs=100.7
Q ss_pred HHHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEC-CCCCCHHHH
Q ss_conf 9998401244216899985794999871789883068898988015099999999996798220259981-431002677
Q gi|254780170|r 14 ILFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPL-NAKERFLAL 92 (342)
Q Consensus 14 ~~~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~-~~~~rf~aL 92 (342)
.+++++|...++ +..+|++|+.++.. .+ -.+..+..++.- ...+||++.. ++.+-=.||
T Consensus 18 ~~~l~~C~~~~~------~~k~ikVG~~~~p~--------~~----i~e~~~~~~~ek--~G~~leiv~FsDy~~PN~AL 77 (272)
T PRK09861 18 GILLAGCDQSSS------DAKHIKVGVINGAE--------QD----VAEVAKKVAKEK--YGLDVELVGFSGSLLPNDAT 77 (272)
T ss_pred HHHHHHCCCCCC------CCCEEEEEECCCCH--------HH----HHHHHHHHHHHH--CCCEEEEEEECCCCCHHHHH
T ss_conf 999874589767------89738999678986--------99----999999888761--79768999946862262897
Q ss_pred HCCCEEEEEECCCCCCCC-HHCCCCCCC--CCCCCCCEEEEEECCCCCCCHHHH-CCCCEEEEECCCHHHHHHHHHHHCC
Q ss_conf 439627998124325320-110278435--322344023463021134753641-7862034313426999999998629
Q gi|254780170|r 93 QSKQIDILSRNTDWTLLR-EISLGLAFR--PITYFDGQGFIMHKKKGISSVSQL-SGASICVQAGTTTELTLADYFKAHN 168 (342)
Q Consensus 93 ~sG~vDil~~~~T~T~~R-d~~~~v~Fs--~~~~~dgq~~lVrk~~~i~s~~dL-~G~~I~v~~GTT~e~~l~~~~~~~~ 168 (342)
.+|++|+=..-...=++. ....+.+++ .+.+....|+. +..+++++|| +|.+|++....|++.---..+...|
T Consensus 78 ~~G~iDaN~fQH~pyL~~~n~~~g~~L~~v~~~~~~P~glY---S~K~ksl~dlp~Ga~IaIPnDpsN~~RAL~lL~~aG 154 (272)
T PRK09861 78 NHGELDANVFQHRPFLEQDNQAHGYKLVAVGNTFVFPMAGY---SKKIKTVAQIKEGATVAIPNDPTNLGRALLLLQKEK 154 (272)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEC---CCCCCCHHHCCCCCEEEECCCHHHHHHHHHHHHHCC
T ss_conf 67983602455799999999986995799731678301403---446598758479998980478126999999999889
Q ss_pred C---------------------CCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEE
Q ss_conf 9---------------------8507874798999999873960299825047999998367800100256444237101
Q gi|254780170|r 169 M---------------------KYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLA 227 (342)
Q Consensus 169 ~---------------------~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg 227 (342)
+ +++++..+ .++.-++|....+|+.+.-.. .+..+.+.-..+...+++ ...||.
T Consensus 155 LI~Lk~~~~~~~t~~DI~~NPk~lk~~e~~-aaql~rsl~Dp~vD~avin~n--~a~~agl~p~~dal~~E~--~~~py~ 229 (272)
T PRK09861 155 LITLKEGKGLLPTALDITDNPRHLQIMELE-GAQLPRVLDDPKVDVAIISTT--YIQQTGLSPVHDSVFIED--KNSPYV 229 (272)
T ss_pred CEEECCCCCCCCCHHHHHCCCCCCEEEECC-HHHHHHHHCCCCCCEEEECHH--HHHHCCCCCCCCCEEECC--CCCCEE
T ss_conf 789779999777744576088776799826-777467505776168997605--798877794400203668--999837
Q ss_pred --EECCCCCH
Q ss_conf --00027775
Q gi|254780170|r 228 --PAIIQGDT 235 (342)
Q Consensus 228 --~avr~gD~ 235 (342)
+++|++|.
T Consensus 230 niiavr~~~~ 239 (272)
T PRK09861 230 NILVAREDNK 239 (272)
T ss_pred EEEEECCCCC
T ss_conf 9999827676
No 41
>PRK12681 cysB transcriptional regulator CysB; Reviewed
Probab=97.33 E-value=0.015 Score=36.50 Aligned_cols=217 Identities=9% Similarity=0.063 Sum_probs=137.5
Q ss_pred HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH
Q ss_conf 57949998717898830688989880150999999999967982202599814310026774396279981243253201
Q gi|254780170|r 32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE 111 (342)
Q Consensus 32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd 111 (342)
.+|.|++|+......+-. .++.+++.+.- ...++++...+..+....|.+|++|+.+..-.. ..
T Consensus 91 ~~G~L~Ia~~~t~a~~~L-----------P~~i~~F~~~~--P~v~l~l~~~~~~~i~~~l~~g~~DlaI~~e~~--~~- 154 (324)
T PRK12681 91 DKGSLYIATTHTQARYAL-----------PPVIKGFIKRY--PRVSLHMHQGSPTQIAEAAAKGEADFAIATEAL--HL- 154 (324)
T ss_pred CCCEEEEEECHHHHHHHH-----------HHHHHHHHHHC--CCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCC--CC-
T ss_conf 763499985358888772-----------59999999878--998446531787999999987998723124666--66-
Q ss_pred HCCCCCCCCCCCCCCEEEEEECCCC-----CCCHHHHCCCC-EEEEECCCHHHHHHHHHHHCCCCCCEEE-ECCHHHHHH
Q ss_conf 1027843532234402346302113-----47536417862-0343134269999999986299850787-479899999
Q gi|254780170|r 112 ISLGLAFRPITYFDGQGFIMHKKKG-----ISSVSQLSGAS-ICVQAGTTTELTLADYFKAHNMKYHPIV-FERVEEIDA 184 (342)
Q Consensus 112 ~~~~v~Fs~~~~~dgq~~lVrk~~~-----i~s~~dL~G~~-I~v~~GTT~e~~l~~~~~~~~~~~~~v~-~~~~~~a~~ 184 (342)
...+. ..|.|.+...++|+++.. .-+++||.+-. |....|++.-..+.+.|.+.|+.-+++. .++.+....
T Consensus 155 -~~dl~-~~P~~~~~~~vvvp~~HPLa~~~~itl~dL~~~plI~~~~g~~~R~~id~~f~~~g~~P~iv~e~~~~~~I~~ 232 (324)
T PRK12681 155 -YDDLI-MLPCYHWNRSVVVPPDHPLAKKKKLTIEELAQYPLVTYVFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKT 232 (324)
T ss_pred -CCCCE-EEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHH
T ss_conf -88746-8640003222457999965579999999986998596149982999999999988997607999898999999
Q ss_pred HHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 9873960299825047999998367800100256--44423710100027775799998877443311212330152089
Q gi|254780170|r 185 AYRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEELGITQKNIN 262 (342)
Q Consensus 185 al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~git~~nv~ 262 (342)
.+..|=-=+++ +..........+.+.+| ..+..-...+++|+|- ..+-..|.-|+.=.-.+|..-|+
T Consensus 233 ~V~~GlGV~il------p~mA~~~~~d~~l~~~~~~~~f~~~~t~i~~r~g~-----~l~~~~~~Fi~~~~p~l~~~~~~ 301 (324)
T PRK12681 233 YVRLGLGVGVI------ASMAVDPVADPDLVAIDASHLFAHSTTKIGFRRGT-----FLRSYMYDFIERFAPHLTRDVVE 301 (324)
T ss_pred HHHHCCEEEEC------HHHHCCCCCCCCEEEEECCCCCCCCEEEEEEECCC-----CHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99959913970------35551965578817843655677764799997997-----15799999999861204899999
Q ss_pred HHHHCCCCHHHHHHH
Q ss_conf 886226717788762
Q gi|254780170|r 263 QVSKDTTNPDVQRFL 277 (342)
Q Consensus 263 ~~~~~s~~p~i~r~l 277 (342)
+.++..+.-++.++.
T Consensus 302 ~~~~~~~~~~~~~~~ 316 (324)
T PRK12681 302 KAVALRSNEEIEALF 316 (324)
T ss_pred HHHHCCCHHHHHHHH
T ss_conf 998347889999997
No 42
>PRK12679 cbl transcriptional regulator Cbl; Reviewed
Probab=97.20 E-value=0.022 Score=35.47 Aligned_cols=204 Identities=9% Similarity=0.093 Sum_probs=129.5
Q ss_pred HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH
Q ss_conf 57949998717898830688989880150999999999967982202599814310026774396279981243253201
Q gi|254780170|r 32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE 111 (342)
Q Consensus 32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd 111 (342)
.+|.|++|+......+-.+ ++.+++-.+- ...++++...+..+....|.+|++|+.+..... ..+
T Consensus 91 ~~G~l~Ig~~~t~a~~~LP-----------~~l~~F~~~~--P~v~l~l~~~~~~~i~~~l~~g~~Dl~i~~~~~--~~~ 155 (316)
T PRK12679 91 TSGVLTIATTHTQARYSLP-----------EVIKAFRELF--PEVRLELIQGTPQEIATLLQNGEADIGIASERL--SND 155 (316)
T ss_pred CCCEEEEEEEECCHHCCCC-----------HHHHHHHHHC--CCCEEEEEECCHHHHHHHHHCCCCCEEECCCCC--CCC
T ss_conf 7764999985032010381-----------9999999868--995389984787999999987998852224677--899
Q ss_pred HCCCCCCCCCCCCCCEEEEEECCCC-----CCCHHHHCCCC-EEEEECCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHH
Q ss_conf 1027843532234402346302113-----47536417862-034313426999999998629985078-7479899999
Q gi|254780170|r 112 ISLGLAFRPITYFDGQGFIMHKKKG-----ISSVSQLSGAS-ICVQAGTTTELTLADYFKAHNMKYHPI-VFERVEEIDA 184 (342)
Q Consensus 112 ~~~~v~Fs~~~~~dgq~~lVrk~~~-----i~s~~dL~G~~-I~v~~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~~ 184 (342)
.. +. +.|.|-+...++|+++.. --+++||.+-. |....|+++-..+.++|+..|+..+++ ...+.+....
T Consensus 156 p~--l~-~~p~~~~~~~lvvp~~HpLa~~~~vsl~~L~~~plI~~~~g~~~R~~id~~f~~~G~~p~i~~e~~~~~~i~~ 232 (316)
T PRK12679 156 PQ--LV-AFPWFRWHHSLLVPLDHPLTQITPLTLESIAKWPLITYRQGITGRSRIDDAFARKGLLADIVLSAQDSDVIKT 232 (316)
T ss_pred CC--CE-EEEEEECCEEEEECCCCCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHH
T ss_conf 76--07-9980553413560189951248998999987999895089984999999999977999977999998999999
Q ss_pred HHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 9873960299825047999998367800100256--44423710100027775799998877443311212330152089
Q gi|254780170|r 185 AYRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEELGITQKNIN 262 (342)
Q Consensus 185 al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~git~~nv~ 262 (342)
.+.+|=-=+++.. ++. ......+.+.++ ..+..-...+++|+|--. +=.++..|+-=--.+|..-|+
T Consensus 233 ~V~~GlGvailp~---~a~---~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~l-----~~~~~~Fi~~~~~~l~~~~~~ 301 (316)
T PRK12679 233 YVALGLGIGLVAE---QSS---GEQEEKNLIRLDTRHLFDANTVWLGLKRGQLQ-----RNYVWRFLELCNAGLSVEDIK 301 (316)
T ss_pred HHHHCCCEEECHH---HHC---CCCCCCCEEEECCCCCCCCCEEEEEEECCCCC-----HHHHHHHHHHHHCCCCHHHHH
T ss_conf 9998990997014---450---75468988993263467665389999678755-----699999999752028999999
Q ss_pred HH
Q ss_conf 88
Q gi|254780170|r 263 QV 264 (342)
Q Consensus 263 ~~ 264 (342)
..
T Consensus 302 ~~ 303 (316)
T PRK12679 302 RQ 303 (316)
T ss_pred HH
T ss_conf 99
No 43
>PRK12683 transcriptional regulator CysB-like protein; Reviewed
Probab=97.07 E-value=0.026 Score=34.93 Aligned_cols=180 Identities=12% Similarity=0.031 Sum_probs=111.0
Q ss_pred HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH
Q ss_conf 57949998717898830688989880150999999999967982202599814310026774396279981243253201
Q gi|254780170|r 32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE 111 (342)
Q Consensus 32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd 111 (342)
.+|.|++|+......+-. ..+.+.+-.. . ...+|++...+..+....|.+|++|+.+.....+..
T Consensus 91 ~~G~l~Ig~~~~~~~~~l-----------p~~l~~f~~~-~-P~v~i~l~~~~~~~~~~~L~~g~~Dl~i~~~~~~~~-- 155 (308)
T PRK12683 91 DSGRLTVATTHTQARYAL-----------PKVVRQFTEV-F-PKVHLALRQGSPQEIAEMLLNGEADIGIATEALDRE-- 155 (308)
T ss_pred CCCEEEECCCCHHHHHCC-----------CHHHHHHHHH-C-CCCEEEEEECCHHHHHHHHHCCCCCEEECCCCCCCC--
T ss_conf 776242001320112016-----------8466899987-8-996699960786999999977997788066677888--
Q ss_pred HCCCCCCCCCCCCCCEEEEEECCCC-----CCCHHHHCCCC-EEEEECCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHH
Q ss_conf 1027843532234402346302113-----47536417862-034313426999999998629985078-7479899999
Q gi|254780170|r 112 ISLGLAFRPITYFDGQGFIMHKKKG-----ISSVSQLSGAS-ICVQAGTTTELTLADYFKAHNMKYHPI-VFERVEEIDA 184 (342)
Q Consensus 112 ~~~~v~Fs~~~~~dgq~~lVrk~~~-----i~s~~dL~G~~-I~v~~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~~ 184 (342)
.++.+. +.+-+...++++++.. .-+++||.+.. |.-..|++.-..+.++++..++..+++ ...+.+....
T Consensus 156 --~~l~~~-~l~~~~~~lv~~~~hpla~~~~v~l~dl~~~p~I~~~~~~~~r~~i~~~~~~~g~~p~~~~e~~~~~~i~~ 232 (308)
T PRK12683 156 --PDLVSF-PYYSWHHVVVVPKGHPLTGRENLTLEALAEYPIITYDQGFTGRSHIDQAFAEAGAVPDIVLTALDADVIKT 232 (308)
T ss_pred --CCCEEE-EECCCCEEEEECCCCCCCCCCCCCHHHHCCCCEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHH
T ss_conf --771687-61245158984699953369999999985999896189982999999999977999857999998999999
Q ss_pred HHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCC--CCCCCCCCEEEECCCCCH
Q ss_conf 987396029982504799999836780010025--644423710100027775
Q gi|254780170|r 185 AYRAHRCDAYTGDISALYALKLTNDRPSEHVIL--PDIISKSPLAPAIIQGDT 235 (342)
Q Consensus 185 al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il--~e~iskEPlg~avr~gD~ 235 (342)
...+|--=++..+ ++... ..+.+ .+.+ ++.+...++.+++|||-.
T Consensus 233 ~V~~g~Gi~ilp~---~~~~~--~~~~~-lv~l~~~~~~~~~~~~i~~rk~~~ 279 (308)
T PRK12683 233 YVELGMGVGIVAA---MAYDP--QRDTG-LVALDTQHLFEANTTRVALRRGAY 279 (308)
T ss_pred HHHHCCCHHHHHH---HHHHH--HHCCC-EEEEECCCCCCCCEEEEEECCCCC
T ss_conf 9997984707899---99878--86099-799989788766179999909685
No 44
>COG1464 NlpA ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]
Probab=97.01 E-value=0.0098 Score=37.63 Aligned_cols=228 Identities=16% Similarity=0.187 Sum_probs=115.8
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCC-CCEEE
Q ss_conf 91389999999999998401244216899985794999871789883068898988015099999999996798-22025
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDD-PSKIQ 79 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd-~~kVe 79 (342)
|++++.+.+++.+++++++|.++++.-. .+|++|+.+.. +-++.+.+++..+.+ ..+++
T Consensus 1 m~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~I~vg~~~~p---------------~a~ile~~~k~~~~k~Gi~l~ 60 (268)
T COG1464 1 MKKLKKLALALVALLALAACGAAAAKAT-----KTIKVGATPGP---------------HAEILEVVVKPALKKKGLDLK 60 (268)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCC-----CCEEEEECCCC---------------HHHHHHHHHHHHHHHCCCEEE
T ss_conf 9438899999999999975223113457-----71799636896---------------599999998778885596599
Q ss_pred EEEC-CCCCCHHHHHCCCEEEEEECCCCCCCCHHC-CCCCCCC--CCCCCCEEEEEECCCCCCCHHHHC-CCCEEEEECC
Q ss_conf 9981-431002677439627998124325320110-2784353--223440234630211347536417-8620343134
Q gi|254780170|r 80 YLPL-NAKERFLALQSKQIDILSRNTDWTLLREIS-LGLAFRP--ITYFDGQGFIMHKKKGISSVSQLS-GASICVQAGT 154 (342)
Q Consensus 80 ~v~~-~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~-~~v~Fs~--~~~~dgq~~lVrk~~~i~s~~dL~-G~~I~v~~GT 154 (342)
+++. +..+-=.+|..|++|+=.--...=++.... .+..++. ..+....++- +..++++++|. |.+|++...-
T Consensus 61 i~~FtDY~~PN~AL~~gdiDaN~FQH~pyL~~~~k~~~~~Lv~vg~~~i~Pmg~Y---Skk~ksl~el~~GatIaiPNDp 137 (268)
T COG1464 61 IVEFTDYVQPNEALADGDIDANAFQHKPYLDQFNKEHGGKLVAVGNTHIEPMGLY---SKKYKSLAELKDGATIAIPNDP 137 (268)
T ss_pred EEEECCCCCHHHHHHCCCCCCHHHHCHHHHHHHHHHCCCCEEEEEEEEECCCEEC---CHHCCCHHHCCCCCEEECCCCC
T ss_conf 9981487665578766884600121468899999973997898755776142501---2200868467999989887898
Q ss_pred CHHHHHHHHHHHCCC-C--------------------CCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHH
Q ss_conf 269999999986299-8--------------------5078747989999998739602998250479999983678001
Q gi|254780170|r 155 TTELTLADYFKAHNM-K--------------------YHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSE 213 (342)
Q Consensus 155 T~e~~l~~~~~~~~~-~--------------------~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~ 213 (342)
|+|.-.-..+.+.|+ + .+++.. +..+.-++|.+ +|+.+--.. ++..+.+ +|.+
T Consensus 138 sN~gRAL~lL~~aGLIkLk~~~~~~aT~~DI~eNPK~lki~El-dAaqlpRaLdd--vD~AvIN~n--yA~~AgL-~p~k 211 (268)
T COG1464 138 TNEGRALLLLQKAGLIKLKDGVNLLATPKDITENPKNLKIKEL-EAAQLPRALDD--VDAAVINTN--YALQAGL-NPKK 211 (268)
T ss_pred CCHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHCCCCCEEEEC-CHHHCCCCCCC--CCEEEECCH--HHHHCCC-CCCC
T ss_conf 7356799999987967976887655888788619445756870-56756532035--677987430--7977599-9120
Q ss_pred HCCCCCCCCCCCEE--EECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHC
Q ss_conf 00256444237101--000277757999988774433112123301520898862267177887623
Q gi|254780170|r 214 HVILPDIISKSPLA--PAIIQGDTEWYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLG 278 (342)
Q Consensus 214 ~~il~e~iskEPlg--~avr~gD~~w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg 278 (342)
..|.-|....+||. +++|.+|.+ +.++..+.+.-+.|+|+.|+-
T Consensus 212 dai~~e~~~~spY~Niivvr~~d~d---------------------~~~ik~lv~a~qs~evk~~i~ 257 (268)
T COG1464 212 DALFEEDKDSSPYVNIIVVREEDKD---------------------DPAVKKLVEAYQSDEVKAFIE 257 (268)
T ss_pred CCEECCCCCCCCCEEEEEECCCCCC---------------------CHHHHHHHHHHCCHHHHHHHH
T ss_conf 4214146667862479997155668---------------------889999999974999999999
No 45
>COG1910 Periplasmic molybdate-binding protein/domain [Inorganic ion transport and metabolism]
Probab=97.00 E-value=0.011 Score=37.37 Aligned_cols=151 Identities=15% Similarity=0.149 Sum_probs=93.3
Q ss_pred EEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCC---------CC-CEEEEEECCC--CCCCHHHHCC
Q ss_conf 2599814310026774396279981243253201102784353223---------44-0234630211--3475364178
Q gi|254780170|r 78 IQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITY---------FD-GQGFIMHKKK--GISSVSQLSG 145 (342)
Q Consensus 78 Ve~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~---------~d-gq~~lVrk~~--~i~s~~dL~G 145 (342)
.+-+-+.+-+-+.+++.|++|+.--.+ -..+.-.+.+.|...|. |. -|||||+++. +|++++||-.
T Consensus 20 ~~~~~vGS~gG~~~i~~G~adiag~hl--ld~~~g~ynip~v~~~~~~~~~LI~g~~Re~Gl~v~~gnpk~i~~~edl~~ 97 (223)
T COG1910 20 AKTVYVGSMGGLLAIKRGEADIAGIHL--LDNESGTYNIPYVKKYLPGEAVLIRGYLREQGLMVQKGNPKNISSLEDLLR 97 (223)
T ss_pred CCEEEECCCCCHHHHHHCCCCEEEEEE--CCCCCCCEEHHHHHHCCCCCEEEEEEEEEEEEEEEECCCCCCCCCHHHHHH
T ss_conf 506886044554766625451444213--257787442300423078846998536651036886489776624998852
Q ss_pred CCEEE---EECCCHHHHHHHHHHHCCCC-CCEEEE----CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCC
Q ss_conf 62034---31342699999999862998-507874----79899999987396029982504799999836780010025
Q gi|254780170|r 146 ASICV---QAGTTTELTLADYFKAHNMK-YHPIVF----ERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVIL 217 (342)
Q Consensus 146 ~~I~v---~~GTT~e~~l~~~~~~~~~~-~~~v~~----~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il 217 (342)
+.+.. ++||-+-.-+.+.++..+.. -.+.-| .+....-.++.+|++|+=++=.+ ++.+. .=+|+
T Consensus 98 ~d~~fVNR~rGSGTR~LlD~~L~~~~~~~~~I~GY~~e~~th~avA~aVa~G~AD~GvGlr~--~A~~~----gL~Fi-- 169 (223)
T COG1910 98 KDLRFVNRNRGSGTRILLDELLGELNILPDSIKGYSDEATTHDAVASAVASGRADAGVGLRH--AAEKY----GLDFI-- 169 (223)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHH--HHHHC----CCCEE--
T ss_conf 67578715899658999999998737670105784323212089999997589872501799--99984----98517--
Q ss_pred CCCCCCCCEEEECCCCCHH--HHHH
Q ss_conf 6444237101000277757--9999
Q gi|254780170|r 218 PDIISKSPLAPAIIQGDTE--WYNI 240 (342)
Q Consensus 218 ~e~iskEPlg~avr~gD~~--w~d~ 240 (342)
+|.+|-|-+++|+++-+ |...
T Consensus 170 --pl~~E~YD~virke~~~~~~vr~ 192 (223)
T COG1910 170 --PLGDEEYDFVIRKERLDKPVVRA 192 (223)
T ss_pred --ECCCCEEEEEEEHHHCCCHHHHH
T ss_conf --74562578998456705888999
No 46
>PRK09501 potD spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed
Probab=96.95 E-value=0.037 Score=33.97 Aligned_cols=240 Identities=13% Similarity=0.085 Sum_probs=120.9
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 91389999999999998401244216899985794999871789883068898988015099999999996798220259
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQY 80 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~ 80 (342)
||| +...++++.+++.+.+++.++ +.++|++-.-.+|- |-|+....-++-+ .||++
T Consensus 1 ~~~-~~~~ll~~~a~~l~~~~~~a~------~~~~L~i~~W~~Yi--------------~~~~i~~Fe~etG---ikV~~ 56 (348)
T PRK09501 1 MKK-WSRHLLAAGALALGMSAAHAD------DNNTLYFYNWTEYV--------------PPGLLEQFTKETG---IKVIY 56 (348)
T ss_pred CHH-HHHHHHHHHHHHHHCCHHHHC------CCCEEEEECCCCCC--------------CHHHHHHHHHHHC---CEEEE
T ss_conf 936-899999999999735033543------38979998710018--------------9789999999989---88999
Q ss_pred EECCCCC-CHHHHHC---CCEEEEEECCCCCCCC------------HH----------------CCCCCCCCCCCCCCEE
Q ss_conf 9814310-0267743---9627998124325320------------11----------------0278435322344023
Q gi|254780170|r 81 LPLNAKE-RFLALQS---KQIDILSRNTDWTLLR------------EI----------------SLGLAFRPITYFDGQG 128 (342)
Q Consensus 81 v~~~~~~-rf~aL~s---G~vDil~~~~T~T~~R------------d~----------------~~~v~Fs~~~~~dgq~ 128 (342)
...++.+ .+.-|++ |.+|+++.+.... +| +. ..+-.|+.||.+...|
T Consensus 57 ~~~~s~ee~~akL~a~~~~~yDvv~ps~~~v-~~l~~~gll~~LD~s~ipN~~nl~p~~~~~~~dp~~~y~vPy~wGt~G 135 (348)
T PRK09501 57 STYESNETMYAKLKTYKDGAYDLVVPSTYYV-DKMRKEGMIQKIDKSKLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATA 135 (348)
T ss_pred EECCCHHHHHHHHHCCCCCCCEEEEECHHHH-HHHHHCCCCCCCCHHHCCCHHHCCHHHHCCCCCCCCCEEEEEEEECCE
T ss_conf 9549999999999717999828999796899-999977984547842284812269767447748998489889975115
Q ss_pred EEEECC----CCCCCHHHHC-----CCCEEEE-----------------ECCCHHHHHH---HHHHHCCCCCCEEEECCH
Q ss_conf 463021----1347536417-----8620343-----------------1342699999---999862998507874798
Q gi|254780170|r 129 FIMHKK----KGISSVSQLS-----GASICVQ-----------------AGTTTELTLA---DYFKAHNMKYHPIVFERV 179 (342)
Q Consensus 129 ~lVrk~----~~i~s~~dL~-----G~~I~v~-----------------~GTT~e~~l~---~~~~~~~~~~~~v~~~~~ 179 (342)
|..+++ ..++|++||- |+ |++. ..|+.+..+. +.+++... .+..|.+
T Consensus 136 i~yn~d~v~~~~~~SW~dL~dp~~kGk-i~~~d~~~~~~~~al~~lG~~~n~~d~~~l~~a~~~L~~~~~--~i~~~~s- 211 (348)
T PRK09501 136 IGVNGDAVDPKSVTSWADLWKPEYKGS-LLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMP--NVAAFNS- 211 (348)
T ss_pred EEEEECCCCCCCCCCHHHHCCHHHCCE-EEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC--CEEEEEC-
T ss_conf 998501147888887898549664790-797166789999999982799888999999999999998511--0589817-
Q ss_pred HHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHH---HHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999873960299825047999998367800100256444237101000277757---99998877443311212330
Q gi|254780170|r 180 EEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTE---WYNIVSWTHYAMVTAEELGI 256 (342)
Q Consensus 180 ~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~---w~d~V~W~~~ali~Aee~gi 256 (342)
++..+.+.+|++++-..-.......+ ....|-+|++=.|...--.-.++++++=+. =..+++|.+..=+.|+
T Consensus 212 d~~~~~l~~Gev~ia~~wsgda~~~~-~~~~~i~~v~PkEG~~~w~D~~~Ipk~A~n~e~A~~FInf~l~Pevaa~---- 286 (348)
T PRK09501 212 DNPANPYMEGEVNLGMIWNGSAFVAR-QAGTPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLLRPDVAKQ---- 286 (348)
T ss_pred CCHHHHHHCCCCEEEEEECHHHHHHH-HCCCCCCEEECCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHH----
T ss_conf 70546987388329987405899999-7089971897578866998998898999898999999998619799999----
Q ss_pred CHHHHHHHHHCCCCHHHHHHH
Q ss_conf 152089886226717788762
Q gi|254780170|r 257 TQKNINQVSKDTTNPDVQRFL 277 (342)
Q Consensus 257 t~~nv~~~~~~s~~p~i~r~l 277 (342)
|.+.....+.|...+.+|
T Consensus 287 ---~a~~~~y~t~n~~A~~~l 304 (348)
T PRK09501 287 ---VAETIGYPTPNLAARKLL 304 (348)
T ss_pred ---HHHHHCCCCHHHHHHHHC
T ss_conf ---999748898308888618
No 47
>PRK12680 transcriptional regulator CysB-like protein; Reviewed
Probab=96.94 E-value=0.038 Score=33.91 Aligned_cols=220 Identities=11% Similarity=0.085 Sum_probs=137.8
Q ss_pred HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH
Q ss_conf 57949998717898830688989880150999999999967982202599814310026774396279981243253201
Q gi|254780170|r 32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE 111 (342)
Q Consensus 32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd 111 (342)
.+|.|++|+......+- =..+.+++-+ .. ...++++...++.+....|.+|++|+.+.........+
T Consensus 91 ~~G~L~Ig~~~t~a~~~-----------LP~vi~~f~~-~y-P~V~l~l~~~~~~~l~e~l~~g~~Diai~~~~~~~~~~ 157 (327)
T PRK12680 91 SQGQLTLTTTHTQARFV-----------LPPAVAQIKQ-AY-PQVSVHLQQAAESAALDLLGQGDADIAVVSTAGGEPSA 157 (327)
T ss_pred CCEEEEEEEECHHHHHH-----------HHHHHHHHHH-HC-CCCEEEEEECCCHHHHHHHHCCCCCEEEECCCCCCCCC
T ss_conf 73379999842277775-----------6899999998-68-99679999898288999997899409994477779976
Q ss_pred HCCCCCCCCCCCCCCEEEEEECCCC------CCCHHHHCCCC-EEEEECCCHHHHHHHHHHHCCCCCCEEE-ECCHHHHH
Q ss_conf 1027843532234402346302113------47536417862-0343134269999999986299850787-47989999
Q gi|254780170|r 112 ISLGLAFRPITYFDGQGFIMHKKKG------ISSVSQLSGAS-ICVQAGTTTELTLADYFKAHNMKYHPIV-FERVEEID 183 (342)
Q Consensus 112 ~~~~v~Fs~~~~~dgq~~lVrk~~~------i~s~~dL~G~~-I~v~~GTT~e~~l~~~~~~~~~~~~~v~-~~~~~~a~ 183 (342)
..+-|.|.....++|+++-. .-+++||.+.. |.-..|++.-..+.+.|+..|+.-+++. ..+.+...
T Consensus 158 -----~~~~pl~~~~~~vvvP~~HpL~~~~~~i~L~~La~~plI~~~~g~~~r~~id~af~~~Gl~P~iv~ea~~~d~Ik 232 (327)
T PRK12680 158 -----GIAVPLYRWRRLVVVPRGHALDTPRTAPDMAALAEHPLISYDSSTRPGSSLQRAFAQVGLEPSIALTALDADLIK 232 (327)
T ss_pred -----CEEEEEEECCEEEEEECCCCCCCCCCCCCHHHHHCCCEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHH
T ss_conf -----547675223579999789810058999999998089889638998679999999997799764799999599999
Q ss_pred HHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCC--CCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 998739602998250479999983678001002564--442371010002777579999887744331121233015208
Q gi|254780170|r 184 AAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPD--IISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEELGITQKNI 261 (342)
Q Consensus 184 ~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e--~iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~git~~nv 261 (342)
..+..|--=+++.. ..... ...+.+.+|- .|..----+++|+|- ..|--+|..|+-=.=++|++.|
T Consensus 233 ~~V~~GlGV~Ivp~------mA~~~-~d~~l~~~~~~~l~~~~~~~~~~~~~~-----~lr~~~~~fi~~~~p~l~~~~~ 300 (327)
T PRK12680 233 TYVRAGLGVGLVAE------MAVNA-FDEDLRAWPAPAPIAECIAWAVLPRDR-----VLRDYALDLVHVLAPQIDKRDL 300 (327)
T ss_pred HHHHHCCEEEECHH------HHHCC-CCCCEEEEECCCCCCCCEEEEEEECCC-----HHHHHHHHHHHHHCCCCCHHHH
T ss_conf 99994986188164------76287-689838940645777560599997884-----6899999999986688899999
Q ss_pred HHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHH
Q ss_conf 988622671778876235887650333799867999
Q gi|254780170|r 262 NQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTY 297 (342)
Q Consensus 262 ~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~ 297 (342)
+ |-|. |+...+-.|++.|--
T Consensus 301 ~------------~~~~----~~~~~~~~~~~~~~~ 320 (327)
T PRK12680 301 R------------RVLD----GNQAPNWPLPPTWES 320 (327)
T ss_pred H------------HHHC----CCCCCCCCCCCCHHH
T ss_conf 9------------9826----888999999974898
No 48
>COG2113 ProX ABC-type proline/glycine betaine transport systems, periplasmic components [Amino acid transport and metabolism]
Probab=96.90 E-value=0.037 Score=33.98 Aligned_cols=117 Identities=15% Similarity=0.217 Sum_probs=74.3
Q ss_pred HHHHHHHHHCCCC-CEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH-------HCCCCCCCCCCCCC-CEEEEEEC
Q ss_conf 9999999967982-202599814310026774396279981243253201-------10278435322344-02346302
Q gi|254780170|r 63 FCRALSSAIFDDP-SKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE-------ISLGLAFRPITYFD-GQGFIMHK 133 (342)
Q Consensus 63 l~raiAaal~gd~-~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd-------~~~~v~Fs~~~~~d-gq~~lVrk 133 (342)
....|++.++.+. ..++.++++..-.+.+|.+|++|+.... |++..+ ....++-.++.+.. -|++.|++
T Consensus 45 ~~t~v~~~iLk~~Gy~v~~~~~~~~~~~~sla~gd~D~~~~~--W~p~~~~~~~~~~~~~~v~~~~~~~~Ga~~g~~vp~ 122 (302)
T COG2113 45 ATTNVAKKILKGLGYTVELVTLDTAVMYQSLAKGDLDVFPEA--WLPTTPDDYKKAVKDKKVELGGTNLEGAKQGWAVPK 122 (302)
T ss_pred HHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCCCCCE--ECCCCHHHHHHHHCCCCEEECCCCCCCCEEEEEECE
T ss_conf 999999999996799624665559999999973797532010--268875889987426854413546677247898240
Q ss_pred CCC---CCCHHHHC-------CCCEEEEECCCHHHHHHHHHHHCCCC-CCEEEECCHHH
Q ss_conf 113---47536417-------86203431342699999999862998-50787479899
Q gi|254780170|r 134 KKG---ISSVSQLS-------GASICVQAGTTTELTLADYFKAHNMK-YHPIVFERVEE 181 (342)
Q Consensus 134 ~~~---i~s~~dL~-------G~~I~v~~GTT~e~~l~~~~~~~~~~-~~~v~~~~~~~ 181 (342)
-.. |++++|+. |+-++...|...+...++.++..+.. -....+++...
T Consensus 123 y~~d~~iksi~D~~~~~d~~~g~i~g~~pG~g~~~~~~~~~k~y~~~~~~~~lv~~s~~ 181 (302)
T COG2113 123 YVADAGIKSIADLAKFKDKFGGKIYGIEPGWGCMRVIEDAIKAYGLGLKGFELVESSEA 181 (302)
T ss_pred EHHHCCCCCHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCHH
T ss_conf 03423556565698666877785781589973548999998643655364488447478
No 49
>pfam03466 LysR_substrate LysR substrate binding domain. The structure of this domain is known and is similar to the periplasmic binding proteins.
Probab=96.89 E-value=0.041 Score=33.66 Aligned_cols=190 Identities=14% Similarity=0.130 Sum_probs=118.5
Q ss_pred HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH
Q ss_conf 57949998717898830688989880150999999999967982202599814310026774396279981243253201
Q gi|254780170|r 32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE 111 (342)
Q Consensus 32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd 111 (342)
.+|+|++|+..... ..|-.+++..+-+. . ...++++...+..+.+..|.+|++|+.+..... .
T Consensus 4 ~~G~i~I~~~~~~~-----------~~~lp~~l~~f~~~-~-P~i~i~i~~~~~~~i~~~l~~g~~Di~i~~~~~---~- 66 (209)
T pfam03466 4 PRGRLRIGAPPTFA-----------AYLLPPLLARFRER-Y-PDVELELREGDSEELLDLLAEGELDLAIRRGPP---D- 66 (209)
T ss_pred CCEEEEEEEEHHHH-----------HHHHHHHHHHHHHH-C-CCCEEEEEECCCHHHHHHHHCCCCEEEEECCCC---C-
T ss_conf 87899999388999-----------99999999999998-8-892899998984889999986981488731789---9-
Q ss_pred HCCCCCCCCCCCCCCEEEEEECCC-----CCCCHHHHCCCC-EEEEECCCHHHHHHHHHHHCCCCCCE-EEECCHHHHHH
Q ss_conf 102784353223440234630211-----347536417862-03431342699999999862998507-87479899999
Q gi|254780170|r 112 ISLGLAFRPITYFDGQGFIMHKKK-----GISSVSQLSGAS-ICVQAGTTTELTLADYFKAHNMKYHP-IVFERVEEIDA 184 (342)
Q Consensus 112 ~~~~v~Fs~~~~~dgq~~lVrk~~-----~i~s~~dL~G~~-I~v~~GTT~e~~l~~~~~~~~~~~~~-v~~~~~~~a~~ 184 (342)
..++.+. +.+-+...+++.++. ..-+++||.... |+...+......+.++++..+.+.++ ..+++...+..
T Consensus 67 -~~~~~~~-~l~~~~~~~~~s~~~~l~~~~~i~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (209)
T pfam03466 67 -DPGLEAR-PLFEEPLVLVAPPDHPLAAGEPVSLEDLADEPLILLEPGSGLRDLVDRALERAGLRPRVALEVNSLEALLA 144 (209)
T ss_pred -CCCEEEE-EEEEEEEEEEECCCCHHHCCCCCCHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCHHHHHH
T ss_conf -9980899-97624136553367055428975435514665798569987137998778764876302467478799999
Q ss_pred HHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCC---HHHHHHHHHHH
Q ss_conf 9873960299825047999998367800100256--4442371010002777---57999988774
Q gi|254780170|r 185 AYRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGD---TEWYNIVSWTH 245 (342)
Q Consensus 185 al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD---~~w~d~V~W~~ 245 (342)
...+|..=++..+.. +... .. .+..+.+| +.--..++.++.+++. +.-+.++.|..
T Consensus 145 lv~~g~Gi~~lp~~~--~~~~--~~-~~~L~~i~~~~~~~~~~~~li~~~~~~~s~~~~~f~~~l~ 205 (209)
T pfam03466 145 AVAAGLGIALLPRSA--VARE--LA-DGRLVVLPLPDPPLPRPIYLVYRKGRRLSPAVRAFIDFLR 205 (209)
T ss_pred HHHHCCEEEECCHHH--HHHH--HH-CCCEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 999499999913999--9988--75-8998999588888744799999894978999999999999
No 50
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional
Probab=96.88 E-value=0.016 Score=36.36 Aligned_cols=206 Identities=14% Similarity=0.161 Sum_probs=103.3
Q ss_pred CHHHHHHHHHHHH-HHHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEE
Q ss_conf 9138999999999-999840124421689998579499987178988306889898801509999999999679822025
Q gi|254780170|r 1 MYKDFFVSILCLI-ILFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQ 79 (342)
Q Consensus 1 M~K~~l~~~l~l~-~~~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe 79 (342)
|++|.|+++.+++ .+++++|+... .+..+|++|+.++.- +++ .+.....+++-- ..+||
T Consensus 3 ~~~k~~~~~~~l~~~l~l~gCg~~~------~~~~~ikVG~~~gp~--------~ei----~e~~~~~~~ek~--G~~ve 62 (271)
T PRK11063 3 FKFKTFAAVGALIGSLALVGCGQDE------KDPNHIKVGVIVGAE--------QQV----AEVAQKVAKEKY--GLDVE 62 (271)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCC------CCCCEEEEEECCCCH--------HHH----HHHHHHHHHHHC--CCEEE
T ss_conf 0299999999999999750058985------679818998468987--------999----999888888607--97689
Q ss_pred EEEC-CCCCCHHHHHCCCEEEEEECCCCCCC-CHHCCCCCCCC--CCCCCCEEEEEECCCCCCCHHHH-CCCCEEEEECC
Q ss_conf 9981-43100267743962799812432532-01102784353--22344023463021134753641-78620343134
Q gi|254780170|r 80 YLPL-NAKERFLALQSKQIDILSRNTDWTLL-REISLGLAFRP--ITYFDGQGFIMHKKKGISSVSQL-SGASICVQAGT 154 (342)
Q Consensus 80 ~v~~-~~~~rf~aL~sG~vDil~~~~T~T~~-Rd~~~~v~Fs~--~~~~dgq~~lVrk~~~i~s~~dL-~G~~I~v~~GT 154 (342)
++.. ++.+-=.||.+|++|+=..-...=++ -....+.++.. +.+....|+. +..+++++|| +|.+|++....
T Consensus 63 iv~FsDy~~pN~AL~~G~iDaN~fQH~~yL~~~nk~~g~~L~~v~~~~~~P~glY---S~K~ksl~elp~Ga~IaIPND~ 139 (271)
T PRK11063 63 LVTFNDYVLPNEALSKGDIDANAFQHKPYLDQQIKDRGYKLVAVGNTFVYPIAGY---SKKIKSLDELQDGSQVAVPNDP 139 (271)
T ss_pred EEEECCCHHHHHHHHCCCCCHHHHHCHHHHHHHHHHCCCCEEEEEEEEEEEEEEE---ECCCCCHHHCCCCCEEEECCCC
T ss_conf 9993683215589867984423455799999999977995799866778415864---2365886475699999804885
Q ss_pred CHHHHHHHHHHHCCC---------------------CCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCH-
Q ss_conf 269999999986299---------------------8507874798999999873960299825047999998367800-
Q gi|254780170|r 155 TTELTLADYFKAHNM---------------------KYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPS- 212 (342)
Q Consensus 155 T~e~~l~~~~~~~~~---------------------~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~- 212 (342)
|++.---..+...|+ +++++..+ ..+.-++|....+|+.+.-.. .+....+ +|.
T Consensus 140 sN~~RAL~lL~~aGLIkLk~~~~~~~T~~DI~~Npk~l~~~e~d-aaql~rsl~D~dv~~aviN~~--~a~~agl-~p~k 215 (271)
T PRK11063 140 TNLGRSLLLLQKVGLIKLKDGVGLLPTVLDIVENPKNLKIVELE-APQLPRSLDDAQIALAVINTT--YASQIGL-TPAK 215 (271)
T ss_pred CHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHCCCCCCEEEECC-HHHHHHHCCCCCEEEEEECHH--HHHHCCC-CCCC
T ss_conf 60999999999889889779999878966885488774899903-776443135765108981477--8977798-9342
Q ss_pred HHCCCCCCCCCCCEE--EECCCCCH
Q ss_conf 100256444237101--00027775
Q gi|254780170|r 213 EHVILPDIISKSPLA--PAIIQGDT 235 (342)
Q Consensus 213 ~~~il~e~iskEPlg--~avr~gD~ 235 (342)
|-..+++ ...||. +++|++|.
T Consensus 216 dal~~E~--~~~py~Nvivvr~~~k 238 (271)
T PRK11063 216 DGIFVED--KDSPYVNLIVAREDNK 238 (271)
T ss_pred CCEEECC--CCCCEEEEEEECCCCC
T ss_conf 5047778--9998389999827777
No 51
>PRK12682 transcriptional regulator CysB-like protein; Reviewed
Probab=96.44 E-value=0.079 Score=31.90 Aligned_cols=182 Identities=11% Similarity=0.040 Sum_probs=109.6
Q ss_pred HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH
Q ss_conf 57949998717898830688989880150999999999967982202599814310026774396279981243253201
Q gi|254780170|r 32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE 111 (342)
Q Consensus 32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd 111 (342)
.+|.|++|+......+-.. ++..++.+.- ...++++...+.......|..|++|+.+..... ..+
T Consensus 91 ~~G~lrIg~~~~~~~~~lp-----------~~l~~f~~~~--P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~~~~--~~~ 155 (309)
T PRK12682 91 DSGTLTIATTHTQARYVLP-----------RVVAKFRKRY--PKVNLSLHQGSPDEIAQMVISGEADIGIATESL--DDD 155 (309)
T ss_pred CCCCCCCCCCHHHHHHCCC-----------HHHHHHHHHC--CCCEEEEEECCHHHHHHHHHCCCCCHHHHHCCC--CCC
T ss_conf 7774121243133320386-----------2539999878--983799983782999999976997645650777--789
Q ss_pred HCCCCCCCCCCCCCCEEEEEECCCC-----CCCHHHHCCCCE-EEEECCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHH
Q ss_conf 1027843532234402346302113-----475364178620-34313426999999998629985078-7479899999
Q gi|254780170|r 112 ISLGLAFRPITYFDGQGFIMHKKKG-----ISSVSQLSGASI-CVQAGTTTELTLADYFKAHNMKYHPI-VFERVEEIDA 184 (342)
Q Consensus 112 ~~~~v~Fs~~~~~dgq~~lVrk~~~-----i~s~~dL~G~~I-~v~~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~~ 184 (342)
.++.+. |.|-+...++++++.. .-+++||.+... ....|++....+.++|...++..+++ ...+.+....
T Consensus 156 --~~l~~~-~l~~~~~~~v~~~~h~la~~~~i~~~dL~~~p~I~~~~~~~~r~~~~~~~~~~g~~p~~~~~~~~~~~~~~ 232 (309)
T PRK12682 156 --PDLVTL-PCYDWTHAVIVPSDHPLAQKERITLEDLAEYPLITYHPGFTGRSAIDKAFAAAGLQPDIVLEAIDSDVIKT 232 (309)
T ss_pred --CCEEEE-EEECCCEEEEECCCCHHHCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHH
T ss_conf --880899-93315236761699721149999999982899797279986799999999977999626999998999999
Q ss_pred HHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCC--CCCCCCCCEEEECCCCCHHH
Q ss_conf 987396029982504799999836780010025--64442371010002777579
Q gi|254780170|r 185 AYRAHRCDAYTGDISALYALKLTNDRPSEHVIL--PDIISKSPLAPAIIQGDTEW 237 (342)
Q Consensus 185 al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il--~e~iskEPlg~avr~gD~~w 237 (342)
...+|--=++..+ ++. +. ..+ +..+.+ ++...+-++.++.|++-...
T Consensus 233 ~v~~G~Gi~~lp~---~~~-~~-~~~-~~Lv~v~~~~~~~~~~~~l~~rk~~~l~ 281 (309)
T PRK12682 233 YVRLGLGVGIIAE---MAY-RP-DRD-GDLVALPAGHLFGPNTAWVAVKRGAYLR 281 (309)
T ss_pred HHHHCCEEEHHHH---HHH-HH-HHC-CCEEEEECCCCCCCCEEEEEEECCCCCC
T ss_conf 9995994242289---983-37-647-9989997988777617999996966118
No 52
>PRK11242 DNA-binding transcriptional regulator CynR; Provisional
Probab=96.43 E-value=0.086 Score=31.64 Aligned_cols=177 Identities=10% Similarity=0.130 Sum_probs=109.2
Q ss_pred HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH
Q ss_conf 57949998717898830688989880150999999999967982202599814310026774396279981243253201
Q gi|254780170|r 32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE 111 (342)
Q Consensus 32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd 111 (342)
.+|.|++|+...+..+ +=.++...+.++- ...++++...+..+....|.+|++|+.+.... .+
T Consensus 89 ~~G~l~ig~~~~~~~~-----------~l~~~l~~f~~~~--P~i~i~l~~~~~~~~~~~l~~~~~D~~i~~~~---~~- 151 (292)
T PRK11242 89 SRGSLRLAMTPTFTAY-----------LIGPLIDAFHARY--PGITLTIREMPQERIEALLADDELDVGIAFAP---VH- 151 (292)
T ss_pred CCCEEEEECHHHHHHH-----------HHHHHHHHHHHHC--CCCCEEEEECCHHHHHHHHHCCCCCEEEEECC---CC-
T ss_conf 7765863024577888-----------7389988888648--89734899768899999986798557998368---88-
Q ss_pred HCCCCCCCCCCCCCCEEEEEECCCC------CCCHHHHCCCCEEE-EECCCHHHHHHHHHHHCCCCCCEE-EECCHHHHH
Q ss_conf 1027843532234402346302113------47536417862034-313426999999998629985078-747989999
Q gi|254780170|r 112 ISLGLAFRPITYFDGQGFIMHKKKG------ISSVSQLSGASICV-QAGTTTELTLADYFKAHNMKYHPI-VFERVEEID 183 (342)
Q Consensus 112 ~~~~v~Fs~~~~~dgq~~lVrk~~~------i~s~~dL~G~~I~v-~~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~ 183 (342)
...+++. +.+-+.-.++++++.. .-+++||.+....+ ..++.+...+.++++..++..+++ ..++...+.
T Consensus 152 -~~~l~~~-~l~~~~~~~v~~~~h~la~~~~~is~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 229 (292)
T PRK11242 152 -SPEIEAQ-PLFTETLALVVGRTHPLAARRKPLTLDELADEPLVLLSAEFATREQIDRYFRRHGITPRVAIEANSISAVL 229 (292)
T ss_pred -CCCCEEE-EECCCEEEEEEECCCHHHHCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHH
T ss_conf -8772565-42045079999089804227999999998189989967998579999999997699985367538899999
Q ss_pred HHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCCH
Q ss_conf 99873960299825047999998367800100256--44423710100027775
Q gi|254780170|r 184 AAYRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGDT 235 (342)
Q Consensus 184 ~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD~ 235 (342)
..+.+|..=++.-+. .+. ..+ +.+.+| +..-.-+++.+.|++-.
T Consensus 230 ~~V~~g~Gi~ilP~~---~~~----~~~-~l~~i~l~~~~~~r~i~lv~~k~~~ 275 (292)
T PRK11242 230 EIVRRGRLATLLPAA---IAR----EHD-DLCAVALDPPLPQRTAALLRRKGAY 275 (292)
T ss_pred HHHHHCCEEEEEHHH---HHH----HCC-CEEEEECCCCCCEEEEEEEEECCCC
T ss_conf 999979969970289---860----089-9899989899870399999989398
No 53
>PRK12684 transcriptional regulator CysB-like protein; Reviewed
Probab=96.35 E-value=0.096 Score=31.35 Aligned_cols=181 Identities=10% Similarity=0.032 Sum_probs=108.2
Q ss_pred HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH
Q ss_conf 57949998717898830688989880150999999999967982202599814310026774396279981243253201
Q gi|254780170|r 32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE 111 (342)
Q Consensus 32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd 111 (342)
.+|.|++|+......+-. .++...+.+.- ...++++...++.+....|.+|++|+.+.........
T Consensus 91 ~~G~l~ig~~~s~~~~~l-----------p~~l~~f~~~~--P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~- 156 (313)
T PRK12684 91 DQGNLTIATTHTQARYAL-----------PAAIAEFKKRY--PKVRLSILQGSPTQIAEMVIHDQADLAIATEAIADYK- 156 (313)
T ss_pred CCCEEECCHHHHHHHHCC-----------CHHHHHHHHHC--CCEEEEEEECCHHHHHHHHHCCCCCEEECCCCCCCCC-
T ss_conf 775141102455575159-----------49999998448--9808999717889999999779966550435777778-
Q ss_pred HCCCCCCCCCCCCCCEEEEEECCC-----CCCCHHHHCCCC-EEEEECCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHH
Q ss_conf 102784353223440234630211-----347536417862-034313426999999998629985078-7479899999
Q gi|254780170|r 112 ISLGLAFRPITYFDGQGFIMHKKK-----GISSVSQLSGAS-ICVQAGTTTELTLADYFKAHNMKYHPI-VFERVEEIDA 184 (342)
Q Consensus 112 ~~~~v~Fs~~~~~dgq~~lVrk~~-----~i~s~~dL~G~~-I~v~~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~~ 184 (342)
.+.+ .|.|-+...++++++. ..-+++||.+.. |....|+..-..+.++|+..|+..+++ ...+.+...+
T Consensus 157 ---~l~~-~~l~~~~~~~v~~~~hpla~~~~v~l~dL~~~p~I~~~~~~~~r~~i~~~~~~~g~~p~~~~e~~~~~~i~~ 232 (313)
T PRK12684 157 ---ELVS-LPCYQWNHAVVVPPDHPLLERKPLTLEDLAQYPLITYDDAFAGRSKINKAFALRGLKPDIVLEAIDADVIKT 232 (313)
T ss_pred ---CEEE-EEEEECCEEEEECCCCCCCCCCCCCHHHHCCCCEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHH
T ss_conf ---7389-980322168995389854469999999985999896289985899999999977998747999997999999
Q ss_pred HHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCC--CCCCCCEEEECCCCCHH
Q ss_conf 98739602998250479999983678001002564--44237101000277757
Q gi|254780170|r 185 AYRAHRCDAYTGDISALYALKLTNDRPSEHVILPD--IISKSPLAPAIIQGDTE 236 (342)
Q Consensus 185 al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e--~iskEPlg~avr~gD~~ 236 (342)
.+.+|-.=++..+ ++... ..+ ...+++|. .+...++.++.|+|-.-
T Consensus 233 ~V~~GlGi~ilP~---~a~~~--~~~-~~L~~lp~~~~~~~~~~~v~~~k~~~l 280 (313)
T PRK12684 233 YVELGLGVGIVAD---MAFDP--ERD-RNLRAIPAGHLFGSNVTRVALKQGAYL 280 (313)
T ss_pred HHHHCCCHHHHHH---HHHCH--HHC-CCEEEEECCCCCCCEEEEEEEECCCCC
T ss_conf 9995985725599---98467--638-987999784677660599999798866
No 54
>TIGR03414 ABC_choline_bnd choline ABC transporter, periplasmic binding protein. Partial phylogenetic profiling (PMID:16930487) vs. the genome property of glycine betaine biosynthesis from choline consistently reveals a member of this ABC transporter periplasmic binding protein as the best match, save for the betaine biosynthesis enzymes themselves. Genomes often carry several paralogs, one encoded together with the permease and ATP-binding components and another encoded next to a choline-sulfatase gene, suggesting that different members of this protein family interact with shared components and give some flexibility in substrate. Of two members from Sinorhizobium meliloti 1021, one designated ChoX has been shown experimentally to bind choline (though not various related compounds such as betaine) and to be required for about 60 % of choline uptake. Members of this protein have an invariant Cys residue near the N-terminus and likely are lipoproteins.
Probab=96.27 E-value=0.083 Score=31.76 Aligned_cols=130 Identities=11% Similarity=0.177 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHC-------CCCCCCCCCCCCC-EEEEEE
Q ss_conf 99999999996798220259981431002677439627998124325320110-------2784353223440-234630
Q gi|254780170|r 61 VDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREIS-------LGLAFRPITYFDG-QGFIMH 132 (342)
Q Consensus 61 VDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~-------~~v~Fs~~~~~dg-q~~lVr 132 (342)
-.+.+.|-..++ -+|++++.+....|.+|..|++|+.... |.+.++.. ..+.-..+.|-++ +++.|+
T Consensus 24 t~v~~~iLE~~G---Y~Ve~~~~~~~~~~~~la~GdiDv~~e~--W~p~~~~~~~~~~~~g~v~~lg~~~~~a~~g~~VP 98 (290)
T TIGR03414 24 TALASVLLEGLG---YQPKVTLLSVPVTYAGLKDGDLDVFLGN--WMPAMEPDIKPYLESGSVEVLGPNLEGAKYTLAVP 98 (290)
T ss_pred HHHHHHHHHHCC---CCEEEEECCHHHHHHHHHCCCCEEEEEC--CCCCCHHHHHHHHHCCCEEECCCCCCCCEEEEEEC
T ss_conf 999999999749---9648996774999999976997078711--14785778998863696898356667863789854
Q ss_pred CC---CCCCCHHHHC-------CCCEEEEECCCHHHHHHHHHH--HCCC-CCCEEEECCHH----HHHHHHHCCCEEEEE
Q ss_conf 21---1347536417-------862034313426999999998--6299-85078747989----999998739602998
Q gi|254780170|r 133 KK---KGISSVSQLS-------GASICVQAGTTTELTLADYFK--AHNM-KYHPIVFERVE----EIDAAYRAHRCDAYT 195 (342)
Q Consensus 133 k~---~~i~s~~dL~-------G~~I~v~~GTT~e~~l~~~~~--~~~~-~~~~v~~~~~~----~a~~al~~Gr~DA~~ 195 (342)
+- .+|+|++||+ |+-++...|......+.+.++ ..++ .++++.- +.. +...|+..|+-=.++
T Consensus 99 ~Yv~d~~l~si~DL~~~~~~f~g~i~gi~~G~~~~~~~~~~i~~~~ygL~~~~l~~~-S~aam~a~l~~A~~~~epiv~~ 177 (290)
T TIGR03414 99 TYVADAGLKSFADIAKFKDKLDGKIYGIEPGNDGNRLIQKMIDKNAFGLGGFKLVES-SEAGMLAQVARAVKRKEWVVFL 177 (290)
T ss_pred HHHHHCCCCCHHHHHHCHHHCCCCEECCCCCCCHHHHHHHHHHHHCCCCCCCEECCC-CHHHHHHHHHHHHHCCCCEEEE
T ss_conf 147765999999998586752997613679984778999998764079887021368-8899999999999869998998
Q ss_pred E
Q ss_conf 2
Q gi|254780170|r 196 G 196 (342)
Q Consensus 196 ~ 196 (342)
.
T Consensus 178 ~ 178 (290)
T TIGR03414 178 G 178 (290)
T ss_pred E
T ss_conf 2
No 55
>COG1732 OpuBC Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis, outer membrane]
Probab=96.22 E-value=0.074 Score=32.05 Aligned_cols=198 Identities=17% Similarity=0.183 Sum_probs=107.8
Q ss_pred HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCC-CCCEEEEEECCCCC--CHHHHHCCCEEEEEEC--CC-
Q ss_conf 579499987178988306889898801509999999999679-82202599814310--0267743962799812--43-
Q gi|254780170|r 32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFD-DPSKIQYLPLNAKE--RFLALQSKQIDILSRN--TD- 105 (342)
Q Consensus 32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~g-d~~kVe~v~~~~~~--rf~aL~sG~vDil~~~--~T- 105 (342)
+...|+||.....- +. +.-.|-+.++- +..+|+.++--..+ .+.||.+|+||+-..- +.
T Consensus 31 ~~~~I~VgsK~~tE--------~~-------IL~~m~~~lle~~~~kv~~~~~lG~t~v~~~Al~~G~IDiYpEYTGt~~ 95 (300)
T COG1732 31 AAKTIVVGSKIFTE--------QY-------ILGNILKQLLEKNGIKVEDKTGLGGTAVVRNALKSGDIDIYPEYTGTAL 95 (300)
T ss_pred CCCCEEEECCCCCH--------HH-------HHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 57887983477838--------89-------9999999999865991454168885299999997598776854323145
Q ss_pred CCCCC-------H-------------HCCCCCCCCCC-CCCCEEEEEECC----CCCCCHHHHCCCCEEEEECCCHHH--
Q ss_conf 25320-------1-------------10278435322-344023463021----134753641786203431342699--
Q gi|254780170|r 106 WTLLR-------E-------------ISLGLAFRPIT-YFDGQGFIMHKK----KGISSVSQLSGASICVQAGTTTEL-- 158 (342)
Q Consensus 106 ~T~~R-------d-------------~~~~v~Fs~~~-~~dgq~~lVrk~----~~i~s~~dL~G~~I~v~~GTT~e~-- 158 (342)
.+..+ | ....+.+-.|+ |-+..++.||++ .+|++++||+-..=.+.-|.+.|-
T Consensus 96 ~~~lk~~~~~~~dp~~~y~~vK~~~~k~~~l~wl~p~~~nNTyA~av~~~~A~~~~i~TiSDLak~~~~l~~g~~~eF~~ 175 (300)
T COG1732 96 FSFLKKDPPASKDPKKVYETVKKLDAKQFKLVWLKPAGFNNTYALAVRKDVAEKYNLETISDLAKHSNQLKLGADSEFAE 175 (300)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEECHHHHHHHCCCCHHHHHHHHHHCEECCCHHHHC
T ss_conf 66345676454798999999999888607978965468776058996198898819816999998665346227842313
Q ss_pred ---HHHHHHHHCCCCCCE-EEECCHHHHHHHHHCCCEEE---EEECCHHHHHHHHHCCCCHHHCCCCCC-CCCCCE--EE
Q ss_conf ---999999862998507-87479899999987396029---982504799999836780010025644-423710--10
Q gi|254780170|r 159 ---TLADYFKAHNMKYHP-IVFERVEEIDAAYRAHRCDA---YTGDISALYALKLTNDRPSEHVILPDI-ISKSPL--AP 228 (342)
Q Consensus 159 ---~l~~~~~~~~~~~~~-v~~~~~~~a~~al~~Gr~DA---~~~D~s~La~~~~~~~~p~~~~il~e~-iskEPl--g~ 228 (342)
-+..+-+..+++++. +..=+..-.++|+.+|.+|+ |++|.- ++ +.+.++|.+. --.-|| +|
T Consensus 176 R~DG~~~l~k~Yg~~~~~~~~~m~~gl~y~Al~~g~~d~~~~YsTDg~-I~--------~~~L~VLkDDK~~fP~Y~~ap 246 (300)
T COG1732 176 RADGLPALQKAYGFDFKPDLRTMDGGLTYQALKNGTVDAADAYSTDGR-IA--------AYGLKVLKDDKGFFPPYQAAP 246 (300)
T ss_pred CCCCCHHHHHHHCCCCCCCCEECCCHHHHHHHHCCCCCEEEECCCCCC-CC--------CCCCEEEECCCCCCCCCCCCC
T ss_conf 651228999984876688744338158999987499776763145522-12--------268579706876799876564
Q ss_pred ECCCC----CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00277----757999988774433112123
Q gi|254780170|r 229 AIIQG----DTEWYNIVSWTHYAMVTAEEL 254 (342)
Q Consensus 229 avr~g----D~~w~d~V~W~~~ali~Aee~ 254 (342)
+||+. .|+...+.+ .+.+-|..+++
T Consensus 247 vvre~vlk~~Pel~~~l~-~l~~kid~~tM 275 (300)
T COG1732 247 VVREEVLKKHPELKTILN-KLSGKIDTETM 275 (300)
T ss_pred EECHHHHHHCHHHHHHHH-HHHCCCCHHHH
T ss_conf 021877767988999998-87545899999
No 56
>COG0725 ModA ABC-type molybdate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=96.21 E-value=0.11 Score=30.91 Aligned_cols=212 Identities=11% Similarity=0.076 Sum_probs=110.5
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 91389999999999998401244216899985794999871789883068898988015099999999996798220259
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQY 80 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~ 80 (342)
|++...+.++++++++...|++.. ..+....|+|-.-.. +.+. |+ ++.+...+.- + .+|++
T Consensus 1 ~~~~~~i~~~l~~~~~~~~~~~~~----~~~~~~~i~VfAAaS-----L~~~------l~-~i~~~F~~~~-~--~~V~~ 61 (258)
T COG0725 1 GKKMKKILALLLLVLLALGCAAGS----AAQEAATITVFAAAS-----LTDA------LE-EIAKQFEKET-G--VKVEV 61 (258)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCC----CCCCCCEEEEEEEHH-----HHHH------HH-HHHHHHHHHH-C--CEEEE
T ss_conf 942688999999999999861565----445674099998156-----6899------99-9999999987-9--87999
Q ss_pred EECCCCCCHHHHHCC-CEEEEEECCCCCCCCHHCCC--CCCCCCCCCCCE-EEEEECCCC--CCCHHHHC---CCCEEEE
Q ss_conf 981431002677439-62799812432532011027--843532234402-346302113--47536417---8620343
Q gi|254780170|r 81 LPLNAKERFLALQSK-QIDILSRNTDWTLLREISLG--LAFRPITYFDGQ-GFIMHKKKG--ISSVSQLS---GASICVQ 151 (342)
Q Consensus 81 v~~~~~~rf~aL~sG-~vDil~~~~T~T~~Rd~~~~--v~Fs~~~~~dgq-~~lVrk~~~--i~s~~dL~---G~~I~v~ 151 (342)
.-..+.....-+++| ++|+.++.-..++..-...+ ..-....|-..+ .+.+++++. +.++.+|. ..++++-
T Consensus 62 ~f~gS~~l~~qIe~Ga~~D~fiSa~~~~~~~l~~~g~~~~~~~~~fa~n~lvl~~~~~~~~~~~~~~~l~~~~~~~lai~ 141 (258)
T COG0725 62 EFGGSGALARQIEQGAPADLFISADDAYMDKLEDKGLIYADSRIVFAGNRLVLAVPKGSKKKIESLEDLLERPDVRLAIG 141 (258)
T ss_pred EECCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCCCEEEEECCEEEEEEECCCCCCCCHHHHHHCCCCCEEEEC
T ss_conf 96138999999975998687998888889999866885667157742574899986887456512988730878579964
Q ss_pred E-CCC-HHHHHHHHHHHCCC----CCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCC-C
Q ss_conf 1-342-69999999986299----850787479899999987396029982504799999836780010025644423-7
Q gi|254780170|r 152 A-GTT-TELTLADYFKAHNM----KYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISK-S 224 (342)
Q Consensus 152 ~-GTT-~e~~l~~~~~~~~~----~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~isk-E 224 (342)
. .+- .-.+..+.+...++ .-+++.-++..+++..+.+|++|+.+.=.+.... ...-..+...|+.... .
T Consensus 142 ~p~~~P~G~ya~~~l~~~g~~~~~~~k~v~~~~v~~~l~~V~~G~ad~g~vy~sd~~~----~~~~~~~~~~~~~~~~Pi 217 (258)
T COG0725 142 DPKTVPAGKYAKEALELLGLWYTLKDKLVLATNVRQALAYVETGEADAGFVYVSDALL----SKKVKIVGVFPEDLHSPI 217 (258)
T ss_pred CCCCCCCHHHHHHHHHHHCHHHHCCCCEEECCCHHHHHHHHHCCCCCEEEEEEEHHHH----CCCCEEEEECCCCCCCCE
T ss_conf 8876971499999999705145336754653657989999863787779999763340----677608997356668971
Q ss_pred CEEEECCCCCH
Q ss_conf 10100027775
Q gi|254780170|r 225 PLAPAIIQGDT 235 (342)
Q Consensus 225 Plg~avr~gD~ 235 (342)
.|..++.++=.
T Consensus 218 ~y~iav~~~~~ 228 (258)
T COG0725 218 VYPIAVLKNAK 228 (258)
T ss_pred EEEEEEECCCC
T ss_conf 67899973889
No 57
>TIGR00212 hemC porphobilinogen deaminase; InterPro: IPR000860 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents hydroxymethylbilane synthase (or porphobilinogen deaminase, 2.5.1.61 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the polymerisation of four PBG molecules into the tetrapyrrole structure, preuroporphyrinogen, with the concomitant release of four molecules of ammonia. This enzyme uses a unique dipyrro-methane cofactor made from two molecules of PBG, which is covalently attached to a cysteine side chain. The tetrapyrrole product is synthesized in an ordered, sequential fashion, by initial attachment of the first pyrrole unit (ring A) to the cofactor, followed by subsequent additions of the remaining pyrrole units (rings B, C, D) to the growing pyrrole chain . The link between the pyrrole ring and the cofactor is broken once all the pyrroles have been added. This enzyme is folded into three distinct domains that enclose a single, large active site that makes use of an aspartic acid as its one essential catalytic residue, acting as a general acid/base during catalysis , . A deficiency of hydroxymethylbilane synthase is implicated in the neuropathic disease, Acute Intermittent Porphyria (AIP) . ; GO: 0004418 hydroxymethylbilane synthase activity, 0033014 tetrapyrrole biosynthetic process.
Probab=95.98 E-value=0.043 Score=33.54 Aligned_cols=136 Identities=18% Similarity=0.164 Sum_probs=86.7
Q ss_pred CCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCC-CCCEE---EEEECC-------CCCCCHHHH-CCCCEEEEECC
Q ss_conf 0026774396279981243253201102784353223-44023---463021-------134753641-78620343134
Q gi|254780170|r 87 ERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITY-FDGQG---FIMHKK-------KGISSVSQL-SGASICVQAGT 154 (342)
Q Consensus 87 ~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~-~dgq~---~lVrk~-------~~i~s~~dL-~G~~I~v~~GT 154 (342)
+.-.+|.+|++||.+.+| +.+ |..+ ..|.. |+-|.+ .+..++.+| .|++|| |
T Consensus 62 Ele~aLL~geiD~AVHSl---------KD~---P~~~~~~gL~~~a~~~RedP~D~l~s~~~~~l~~LP~GA~vG----T 125 (312)
T TIGR00212 62 ELEQALLDGEIDLAVHSL---------KDV---PTVLSPEGLEIAAVLKREDPRDVLVSRKYLSLEELPQGAKVG----T 125 (312)
T ss_pred HHHHHHHCCCCCEEEECC---------CCC---CCCCCCCCCEEEEECCCCCCCCEEEECCCCCHHHCCCCCEEE----C
T ss_conf 999996259844888430---------235---765598882786355878864268862788851277988897----4
Q ss_pred CHHHHHHHHHHHCCCCCCEEEECCH-HHHHHHHHC-CCEEEEEECCHHHHH-HHHHCCCC-HHHCCCCCCCCCC----CE
Q ss_conf 2699999999862998507874798-999999873-960299825047999-99836780-0100256444237----10
Q gi|254780170|r 155 TTELTLADYFKAHNMKYHPIVFERV-EEIDAAYRA-HRCDAYTGDISALYA-LKLTNDRP-SEHVILPDIISKS----PL 226 (342)
Q Consensus 155 T~e~~l~~~~~~~~~~~~~v~~~~~-~~a~~al~~-Gr~DA~~~D~s~La~-~~~~~~~p-~~~~il~e~iskE----Pl 226 (342)
++-.- +.+++...++.+++++-.| +.-+.-|.. |++||++- .-|| .|..+.+. -.+.+-|+.+--. -+
T Consensus 126 SS~RR-~aql~~~RPDl~~~~lRGNi~TRl~Kl~~Gg~~DAiiL---A~AGL~RLg~~~~~i~~~~~~~~~~PA~GQG~i 201 (312)
T TIGR00212 126 SSLRR-KAQLKALRPDLEIEPLRGNIDTRLRKLDEGGEYDAIIL---AAAGLKRLGLENDVITEVLDPEVMLPAVGQGAI 201 (312)
T ss_pred CHHHH-HHHHHHCCCCCEEEECCCCHHHHHHHHCCCCCCHHHHH---HHHHHHCCCCCCHHHHHCCCHHHCCCCCCCCEE
T ss_conf 57999-99998308994499746987999998518882048999---888753025410134314781141788667579
Q ss_pred EEECCCCCHHHHHHHH
Q ss_conf 1000277757999988
Q gi|254780170|r 227 APAIIQGDTEWYNIVS 242 (342)
Q Consensus 227 g~avr~gD~~w~d~V~ 242 (342)
|+.+|++|.....+.+
T Consensus 202 ~ve~R~dD~~~~~il~ 217 (312)
T TIGR00212 202 AVECRKDDTEIKEILK 217 (312)
T ss_pred EEEEECCCHHHHHHHH
T ss_conf 9998458779999862
No 58
>PRK10677 modA molybdate transporter periplasmic protein; Provisional
Probab=95.97 E-value=0.15 Score=30.16 Aligned_cols=176 Identities=9% Similarity=-0.010 Sum_probs=98.8
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 91389999999999998401244216899985794999871789883068898988015099999999996798220259
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQY 80 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~ 80 (342)
|-|+++...++..+....+.++.++ .++|+|-.-.+.-+ --=|+++..-+.-+ .+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~a~-------~~~l~V~aAAsL~~------------~~~ei~~~Fek~~g---~~v~~ 58 (257)
T PRK10677 1 MARKWLNLFAGAALSFAVAGNALAD-------EGKITVFAAASLTN------------AMQDIATQYKKEKG---VDVVS 58 (257)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCC-------CCEEEEEEECCCHH------------HHHHHHHHHHHHHC---CEEEE
T ss_conf 9128999999999987235533256-------88599999257689------------99999999988419---84999
Q ss_pred EECCCCCCHHHHHCC-CEEEEEECCCCCCCCHHCC-CCCCC-CCCCCCCE-EEEEECCCC-----CCCHH---H-HCCCC
Q ss_conf 981431002677439-6279981243253201102-78435-32234402-346302113-----47536---4-17862
Q gi|254780170|r 81 LPLNAKERFLALQSK-QIDILSRNTDWTLLREISL-GLAFR-PITYFDGQ-GFIMHKKKG-----ISSVS---Q-LSGAS 147 (342)
Q Consensus 81 v~~~~~~rf~aL~sG-~vDil~~~~T~T~~Rd~~~-~v~Fs-~~~~~dgq-~~lVrk~~~-----i~s~~---d-L~G~~ 147 (342)
.--.+......++.| .+|+.++.-+-.+++-... .+.-. ..+|..++ .+++++++. +.... + |.+.+
T Consensus 59 ~fgsSg~L~~QI~~GAp~DvF~sAd~~~~~~l~~~~~i~~~~~~~~a~n~lvli~pk~~~~~~~~i~~~~d~~~ll~~~r 138 (257)
T PRK10677 59 SFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVVAPKASEQKDFTIDKKTDWTSLLNGGR 138 (257)
T ss_pred EECCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCCCEEEEECCEEEEEEECCCCCCCCCCCCCCCHHHHCCCCC
T ss_conf 96648999999982899658997875778999867785677645621474999984687778644343323777425880
Q ss_pred EEEEECC--CHHHHHHHHHHHCCC----CCCEEEECCHHHHHHHHHCCCEEEEEECC
Q ss_conf 0343134--269999999986299----85078747989999998739602998250
Q gi|254780170|r 148 ICVQAGT--TTELTLADYFKAHNM----KYHPIVFERVEEIDAAYRAHRCDAYTGDI 198 (342)
Q Consensus 148 I~v~~GT--T~e~~l~~~~~~~~~----~~~~v~~~~~~~a~~al~~Gr~DA~~~D~ 198 (342)
|++-.-. -.-.+-.+.++..|+ +-+++.-++..++++.+.+|++|+-+.=.
T Consensus 139 iaia~P~~aP~G~ya~~~L~~~gl~~~l~~klv~~~nV~~~l~~v~~G~adaG~Vy~ 195 (257)
T PRK10677 139 LAVGDPDHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYG 195 (257)
T ss_pred EEEECCCCCCCHHHHHHHHHHCCCHHHHCCCEEECCCHHHHHHHHHCCCCCEEEEEC
T ss_conf 898588888657999999997676655065413257699999999829987899970
No 59
>COG4663 FcbT1 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.87 E-value=0.066 Score=32.37 Aligned_cols=145 Identities=14% Similarity=0.157 Sum_probs=80.6
Q ss_pred CCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEC------CCCCCHHHHHCCCEEEEEECCCC
Q ss_conf 794999871789883068898988015099999999996798220259981------43100267743962799812432
Q gi|254780170|r 33 RGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPL------NAKERFLALQSKQIDILSRNTDW 106 (342)
Q Consensus 33 rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~------~~~~rf~aL~sG~vDil~~~~T~ 106 (342)
.-++|.-....+|+ +-..+-|+-.|+|+++++...|+ +++.+. ..-+.++++++|.+|+.-..+-+
T Consensus 34 ~p~~~wrltsswpk-----sldt~~g~a~~~Ak~v~~mT~G~---fqIqvfaAgeivpglq~~DaV~aGtve~gHt~sYY 105 (363)
T COG4663 34 NPKVRWRLTSSWPK-----SLDTIYGGAEDMAKAVAEMTGGN---FQIQVFAAGEIVPGLQALDAVKAGTVEMGHTCSYY 105 (363)
T ss_pred CCCEEEEEECCCCC-----CCCHHCCHHHHHHHHHHHHHCCC---EEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEE
T ss_conf 88358998326888-----75312144999999999850894---48997357771666025768752863134406899
Q ss_pred CCCCHHCCC----CCCCC------CC------------CCCCEEEEE-ECC-----------CCCCCHHHHCCCCEEEEE
Q ss_conf 532011027----84353------22------------344023463-021-----------134753641786203431
Q gi|254780170|r 107 TLLREISLG----LAFRP------IT------------YFDGQGFIM-HKK-----------KGISSVSQLSGASICVQA 152 (342)
Q Consensus 107 T~~Rd~~~~----v~Fs~------~~------------~~dgq~~lV-rk~-----------~~i~s~~dL~G~~I~v~~ 152 (342)
-...+.... +-|.- .. ||..++++. +-. ..|++++||.|.|.-+ .
T Consensus 106 ~~GK~P~~a~~ts~PFglnA~~qnAW~y~GGG~~l~~k~ya~~n~~~~p~GntgaQMgGWFrKeI~sv~DLkGLKMRI-~ 184 (363)
T COG4663 106 YKGKDPTLALGTSVPFGLNARQQNAWFYHGGGNELLNKFYADHNLISFPGGNTGAQMGGWFRKEINSVEDLKGLKMRI-P 184 (363)
T ss_pred EECCCCCHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCEEECCCCCCCCCCCCHHHHHCCCHHHHCCCEEEC-C
T ss_conf 855885022311567424638887899808858999998721681323689876653500230014265533652342-6
Q ss_pred CCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEE
Q ss_conf 342699999999862998507874798999999873960299
Q gi|254780170|r 153 GTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAY 194 (342)
Q Consensus 153 GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~ 194 (342)
|-.. +.+..-|.. |... --.|.+.+|+.|-+||.
T Consensus 185 G~aG-----~V~~kLGv~--pq~i-agGeiy~ALerGtIDAa 218 (363)
T COG4663 185 GFAG-----QVMAKLGVV--PQQI-AGGEIYPALERGTIDAA 218 (363)
T ss_pred CCHH-----HHHHHHCCC--CCCC-CCCCEEHHHHCCCCCHH
T ss_conf 5088-----899982887--5436-88642045433661178
No 60
>pfam09084 NMT1 NMT1/THI5 like. This family contains the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine. They are regulated by thiamine.
Probab=95.74 E-value=0.025 Score=35.05 Aligned_cols=76 Identities=12% Similarity=0.097 Sum_probs=49.5
Q ss_pred HHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCH--HHHH
Q ss_conf 99986299850787479899999987396029982504799999836780010025644423710100027775--7999
Q gi|254780170|r 162 DYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDT--EWYN 239 (342)
Q Consensus 162 ~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~--~w~d 239 (342)
-||++.|++++++.|.+..+..+++.+|++|.-.+..+..+..+. .+ .+.+++.......+.+.+++++.+ .+.|
T Consensus 14 G~f~~~GL~Ve~~~~~~~~~~~~al~sG~~D~a~~~~~~~~~~~~--~g-~~~~~i~~~~~~~~~~~~v~~~~~i~s~~D 90 (216)
T pfam09084 14 GYFKEEGLDVEIVEPADPSDAVQLVAAGKADFGVSYQPSLLLARA--KG-LPVVSVAALIQHPPNGLISLKDSGIKSPKD 90 (216)
T ss_pred CCHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEECCCHHHHHHHH--CC-CEEEEEEECCCCCCEEEEEECCCCCCCHHH
T ss_conf 946884980899966882789999976986778537199999997--89-849999964358972899978889899789
Q ss_pred H
Q ss_conf 9
Q gi|254780170|r 240 I 240 (342)
Q Consensus 240 ~ 240 (342)
+
T Consensus 91 L 91 (216)
T pfam09084 91 L 91 (216)
T ss_pred H
T ss_conf 5
No 61
>COG0040 HisG ATP phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=95.65 E-value=0.051 Score=33.11 Aligned_cols=179 Identities=17% Similarity=0.103 Sum_probs=106.4
Q ss_pred EEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHC-------CCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCC-CEE
Q ss_conf 259981431002677439627998124325320110-------278435322344023463021134753641786-203
Q gi|254780170|r 78 IQYLPLNAKERFLALQSKQIDILSRNTDWTLLREIS-------LGLAFRPITYFDGQGFIMHKKKGISSVSQLSGA-SIC 149 (342)
Q Consensus 78 Ve~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~-------~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~-~I~ 149 (342)
|++.-+-.++.-.-+..|.+|+-+.+.-+=.|+... ..+.|... --.+.++.+..+++.+||.|+ +|+
T Consensus 45 I~~~~vR~~DIP~yV~~G~~DlGItG~D~l~E~~~~~~~v~~l~dL~fG~c----rl~vAvp~~~~~~~~~~l~~~~rIA 120 (290)
T COG0040 45 IELLLVRAQDIPTYVEDGVADLGITGEDVLRESGLDDASVEELLDLGFGGC----RLVVAVPEESDYTSPEDLKGRLRIA 120 (290)
T ss_pred EEEEEECHHHHHHHHHCCCEEEEEECHHHHHHCCCCCCCCEEHCCCCCCCE----EEEEEECCCCCCCCHHHHCCCCEEE
T ss_conf 589997768844898568500413211313331467657100101787757----9999955776756845726884688
Q ss_pred EEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEE
Q ss_conf 43134269999999986299850787479899999987396029982504799999836780010025644423710100
Q gi|254780170|r 150 VQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPA 229 (342)
Q Consensus 150 v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~a 229 (342)
|.+-...++||+..+++++++.....-|. +-..|-+||++.=.+.=..++. +..+++...++.. -...
T Consensus 121 ----TkYp~l~~~yf~~~g~~~~Ii~l~GsvE~--aP~~GlADaIvDivsTG~TLka-----NgL~~id~i~~ss-a~LI 188 (290)
T COG0040 121 ----TKYPNLARKYFAEKGIDVEIIKLSGSVEL--APALGLADAIVDIVSTGTTLKA-----NGLKEIEVIYDSS-ARLI 188 (290)
T ss_pred ----ECCHHHHHHHHHHCCCEEEEEECCCCEEE--CCCCCCCCEEEEEECCCHHHHH-----CCCEEEEEEEEEE-EEEE
T ss_conf ----73689999999975966999975572763--0156853168885067775897-----7998878898547-8999
Q ss_pred CC------CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHH
Q ss_conf 02------7775799998877443311212330152089886226717788762
Q gi|254780170|r 230 II------QGDTEWYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFL 277 (342)
Q Consensus 230 vr------~gD~~w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~l 277 (342)
++ .+++.-.++++ -+.+-++|+++-----|+.+ ..-+++..+|
T Consensus 189 ~n~~~~~~~k~~~i~~l~~-rl~gvi~a~~~~~i~~n~p~----~~ld~v~~ll 237 (290)
T COG0040 189 VNAKASLKDKQELIDQLVT-RLKGVIEARGSKYIMLNAPR----ERLDEVTALL 237 (290)
T ss_pred ECCCCCCCHHHHHHHHHHH-HHHHHHHHCCEEEEEEECCH----HHHHHHHHHC
T ss_conf 6164232105799999999-99999853446689954887----7877789746
No 62
>PRK01686 hisG ATP phosphoribosyltransferase catalytic subunit; Reviewed
Probab=95.30 E-value=0.059 Score=32.69 Aligned_cols=131 Identities=15% Similarity=0.093 Sum_probs=83.5
Q ss_pred EEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCC----CCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEE
Q ss_conf 02599814310026774396279981243253201102----78435322344023463021134753641786203431
Q gi|254780170|r 77 KIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISL----GLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQA 152 (342)
Q Consensus 77 kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~----~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~ 152 (342)
.+++.-+-.++.-..+..|-+|+-+.+.-|-.|.+... .+.|... ...+.++++ ......+.+++|+
T Consensus 46 ~i~~~~~r~~DIp~~V~~G~~DlGI~G~D~l~E~~~~v~~l~dL~fG~c----~l~vA~p~~--~~~~~~~~~~rIA--- 116 (212)
T PRK01686 46 DVRFLLVRATDVPTYVEHGAADLGIVGKDVLMEHGKDLYEPLDLGIGKC----RLSVAVPPG--ASAPDLGARLRVA--- 116 (212)
T ss_pred CEEEEEECHHHHHHHHHCCCCCEEEEEHHHHHCCCCCCEEEECCCCCEE----EEEEEECCC--CCCCCCCCCCEEE---
T ss_conf 9799998768889999779976886158877525899169962686118----999995277--7752004898999---
Q ss_pred CCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCC
Q ss_conf 342699999999862998507874798999999873960299825047999998367800100256444237
Q gi|254780170|r 153 GTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKS 224 (342)
Q Consensus 153 GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskE 224 (342)
|.+....++||.++|++++++......| .|-..|-+|+++.=.+.=..++. +..+++.+.+..+
T Consensus 117 -TkYp~it~~yf~~~gi~~~iv~l~GavE--~aP~~G~AD~IvDiv~TG~TLk~-----NgL~~i~~Il~s~ 180 (212)
T PRK01686 117 -TKYPNIAREYFAEKGVQVEIIKLYGSVE--LAPLVGLADAIVDLVSTGNTLRA-----NGLVEVEEIMDIS 180 (212)
T ss_pred -EEHHHHHHHHHHHCCCCEEEEECCCCCC--CCCCCCCCCEEEEEECCHHHHHH-----CCCEEEEEEEEEE
T ss_conf -8628889999997399614895415223--56778842389998477688998-----7999805888878
No 63
>pfam03180 Lipoprotein_9 NLPA lipoprotein. This family of bacterial lipoproteins contains several antigenic members, that may be involved in bacterial virulence. Their precise function is unknown. However they are probably distantly related to pfam00497 which are solute binding proteins.
Probab=95.22 E-value=0.28 Score=28.45 Aligned_cols=158 Identities=19% Similarity=0.179 Sum_probs=84.0
Q ss_pred HHHHHHHHCCCCCEEEEEEC-CCCCCHHHHHCCCEEEEEECCCCCC-CCHHCCCCCCC--CCCCCCCEEEEEECCCCCCC
Q ss_conf 99999996798220259981-4310026774396279981243253-20110278435--32234402346302113475
Q gi|254780170|r 64 CRALSSAIFDDPSKIQYLPL-NAKERFLALQSKQIDILSRNTDWTL-LREISLGLAFR--PITYFDGQGFIMHKKKGISS 139 (342)
Q Consensus 64 ~raiAaal~gd~~kVe~v~~-~~~~rf~aL~sG~vDil~~~~T~T~-~Rd~~~~v~Fs--~~~~~dgq~~lVrk~~~i~s 139 (342)
.+.+++.-+ .+||++.. ++.+-=.||.+|+||+-+.-...=+ ......+.+++ .+.|....|+.- ..+++
T Consensus 17 v~~~~~~~G---i~veiv~F~Dy~~pN~AL~~GeIDaN~fQH~~yl~~~n~~~g~~L~~v~~~~~~p~glYS---~k~ks 90 (236)
T pfam03180 17 AKPLAKKKG---LDLEIVEFTDYVQPNTALADGEIDANAFQHLPYLDQFNKEGGLDLVAVGNTHVEPIGLYS---KKYKS 90 (236)
T ss_pred HHHHHHHCC---CEEEEEEECCCCCHHHHHHCCCCCHHHHCCHHHHHHHHHHCCCCEEEEEEEEECCEEEEE---CCCCC
T ss_conf 999999649---879999816864550797789955244438999999999779967996304672379543---37688
Q ss_pred HHHH-CCCCEEEEECCCHHHHHHHHHHHCCC---------------------CCCEEEECCHHHHHHHHHCCCEEEEEEC
Q ss_conf 3641-78620343134269999999986299---------------------8507874798999999873960299825
Q gi|254780170|r 140 VSQL-SGASICVQAGTTTELTLADYFKAHNM---------------------KYHPIVFERVEEIDAAYRAHRCDAYTGD 197 (342)
Q Consensus 140 ~~dL-~G~~I~v~~GTT~e~~l~~~~~~~~~---------------------~~~~v~~~~~~~a~~al~~Gr~DA~~~D 197 (342)
++|| +|.+|++....|++.-.-..+.+.|+ +++++..+ ..+.-.+|.. +|+.+..
T Consensus 91 l~~lp~Ga~IaIpnD~sN~~RAL~lL~~aGLI~Lk~~~~~~~t~~DI~~Npk~l~~~ev~-a~ql~~~l~d--vD~avin 167 (236)
T pfam03180 91 LSELPDGATIAVPNDPSNEGRALLLLEKAGLIKLKDGAGLLATVKDITENPKNLKIKELE-AAQLPRALDD--VDAAVIN 167 (236)
T ss_pred HHHCCCCCEEEECCCCCHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHCCCCCEEEEEC-HHHHHHHCCC--CCEEEEC
T ss_conf 758579998981588442999999999889889768999878988897286776699916-7775542166--5789986
Q ss_pred CHHHHHHHHHCCCCHHHCCCCCCCCCCCE--EEECCCCC
Q ss_conf 04799999836780010025644423710--10002777
Q gi|254780170|r 198 ISALYALKLTNDRPSEHVILPDIISKSPL--APAIIQGD 234 (342)
Q Consensus 198 ~s~La~~~~~~~~p~~~~il~e~iskEPl--g~avr~gD 234 (342)
.. .+..+.+ +|.+..+..|. ..+|| -+++|++|
T Consensus 168 ~n--~a~~agl-~p~~~~l~~e~-~~~~y~n~ivvr~~~ 202 (236)
T pfam03180 168 TN--YALQAGL-DPKKDALFEED-KDSPYVNIIVVREDD 202 (236)
T ss_pred HH--HHHHCCC-CHHHHHHHCCC-CCCCEEEEEEEECCC
T ss_conf 56--7988794-92121331478-899837999981777
No 64
>PRK09791 putative DNA-binding transcriptional regulator; Provisional
Probab=95.10 E-value=0.3 Score=28.23 Aligned_cols=182 Identities=10% Similarity=0.039 Sum_probs=110.1
Q ss_pred HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH
Q ss_conf 57949998717898830688989880150999999999967982202599814310026774396279981243253201
Q gi|254780170|r 32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE 111 (342)
Q Consensus 32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd 111 (342)
.+|.+++|+...... .+=.++...+.+.- ...++++...++.+.+..|.+|++|+.+.... ....+
T Consensus 93 ~~G~l~Ig~~~~~~~-----------~~lp~~l~~f~~~~--P~v~i~i~~~~~~~~~~~l~~g~~D~~i~~~~-~~~~~ 158 (302)
T PRK09791 93 LAGQINIGMGASISR-----------SLMPAVISRFHQQH--PQVKVRIMEGQLVSMINELRQGELDFTINTYY-QGPYD 158 (302)
T ss_pred CCCEEEEEECHHHHH-----------HHHHHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHCCCCCEEEECCC-CCCCC
T ss_conf 663399986268898-----------71199999999988--79779999899999999998799778996567-88788
Q ss_pred HCCCCCCCCCCCCCCEEEEEECCC---CCCCHHHHCCCCE-EEEECCCHHHHHHHHHHHCCCCCCE-EEECCHHHHHHHH
Q ss_conf 102784353223440234630211---3475364178620-3431342699999999862998507-8747989999998
Q gi|254780170|r 112 ISLGLAFRPITYFDGQGFIMHKKK---GISSVSQLSGASI-CVQAGTTTELTLADYFKAHNMKYHP-IVFERVEEIDAAY 186 (342)
Q Consensus 112 ~~~~v~Fs~~~~~dgq~~lVrk~~---~i~s~~dL~G~~I-~v~~GTT~e~~l~~~~~~~~~~~~~-v~~~~~~~a~~al 186 (342)
. .+.+. +.+.+...++++++. +..++++|.+... ....+++....+.+++...+..-++ +..++.......+
T Consensus 159 ~--~l~~~-~l~~~~~~~v~~~~hpl~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~lv 235 (302)
T PRK09791 159 H--EFTFE-KLLEKQFAIFCRPGHPAIGARSIKQLLDYSWTMPTPHGSYYKQLSELLDDQAQTPQVGVVCETFSACISLV 235 (302)
T ss_pred C--CEEEE-EEEEEEEEEEECCCCCCCCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHH
T ss_conf 7--64799-97740159998389843579899998479938757999799999999996799985699999299999999
Q ss_pred HCCCEEEEEECCHHHHHHHHHCCCCHHHCCC--CCCCCCCCEEEECCCCCH
Q ss_conf 7396029982504799999836780010025--644423710100027775
Q gi|254780170|r 187 RAHRCDAYTGDISALYALKLTNDRPSEHVIL--PDIISKSPLAPAIIQGDT 235 (342)
Q Consensus 187 ~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il--~e~iskEPlg~avr~gD~ 235 (342)
..|.+=++..+.. +.... ..+..+.+ ++....-+++.+.|++..
T Consensus 236 ~~g~gv~ilp~~~--~~~~~---~~~~lv~lpl~~~~~~~~~~lv~r~~~~ 281 (302)
T PRK09791 236 AKSDFLSILPEEM--GCDPL---HGQGLVMLPVSEILPKAAYYLIQRRDSR 281 (302)
T ss_pred HHCCEEEEECHHH--HHHHH---HCCCEEEEECCCCCCCEEEEEEEECCCC
T ss_conf 9789679631999--98787---4899999979998860089999989098
No 65
>TIGR02424 TF_pcaQ pca operon transcription factor PcaQ; InterPro: IPR012787 Members of this family are LysR-family transcription factors associated with operons for catabolism of protocatechuate . Members occur only in proteobacteria.; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0019619 protocatechuate catabolic process, 0045941 positive regulation of transcription.
Probab=94.53 E-value=0.42 Score=27.30 Aligned_cols=164 Identities=13% Similarity=0.118 Sum_probs=108.3
Q ss_pred CEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCC-----CCHHHHCCCCEEE
Q ss_conf 20259981431002677439627998124325320110278435322344023463021134-----7536417862034
Q gi|254780170|r 76 SKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGI-----SSVSQLSGASICV 150 (342)
Q Consensus 76 ~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i-----~s~~dL~G~~I~v 150 (342)
..++.+...-...++.|+.|++|++++=++- +++ -.+++|. +.|...-.++||++-.. -+.+.|+.=-|-.
T Consensus 122 ~~~~i~tG~n~~Lld~LR~G~LDlVvGRL~a-pe~--MqGl~Fe-~LY~E~v~~VVragHPL~~~p~~~~~~L~~yPvl~ 197 (300)
T TIGR02424 122 LRLRIVTGENAYLLDQLRVGELDLVVGRLGA-PET--MQGLSFE-HLYNERVVFVVRAGHPLLAAPSLSVASLADYPVLL 197 (300)
T ss_pred CEEEEEECCCHHHHHHHCCCCCEEEEECCCC-CHH--HCCCCCC-CCCCCCEEEEECCCCCCCCCCCCCHHHHHCCCCCC
T ss_conf 5589987785787987228980277606888-321--1586425-14477337887085785578877778873388104
Q ss_pred E-ECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEE--EECCHHHHHHHHHCCCCHHHCCCC--CCCCCCC
Q ss_conf 3-1342699999999862998507874798999999873960299--825047999998367800100256--4442371
Q gi|254780170|r 151 Q-AGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAY--TGDISALYALKLTNDRPSEHVILP--DIISKSP 225 (342)
Q Consensus 151 ~-~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~--~~D~s~La~~~~~~~~p~~~~il~--e~iskEP 225 (342)
- .||+-=..+..+|-++|++.=+...|+...++-==.--.-||+ ++-. .. ...+. .+..+.|| ...+.+|
T Consensus 198 P~~g~~IR~~~erll~a~G~~~l~~r~EtvS~~fgR~y~~~sdA~WiiS~g-vv---~~dl~-~G~L~~Lp~~~~~t~GP 272 (300)
T TIGR02424 198 PPEGSIIRPLVERLLIACGIPALPQRIETVSDSFGRRYVRESDAVWIISEG-VV---AKDLA-DGTLVELPVDTRETAGP 272 (300)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCHH-HH---HHHHC-CCCEEECCCCCCCCCCC
T ss_conf 862226799999999874765566013443157887776454725772667-89---88752-89277646575778877
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 010002777579999887744331
Q gi|254780170|r 226 LAPAIIQGDTEWYNIVSWTHYAMV 249 (342)
Q Consensus 226 lg~avr~gD~~w~d~V~W~~~ali 249 (342)
-|..+|.+. +....-+|-..++-
T Consensus 273 VGL~~R~d~-~~s~aaq~f~~alr 295 (300)
T TIGR02424 273 VGLCTRPDE-QLSRAAQLFVDALR 295 (300)
T ss_pred CCCCCCCCC-CCCHHHHHHHHHHH
T ss_conf 021548887-78989999999999
No 66
>TIGR02122 TRAP_TAXI TRAP transporter solute receptor, TAXI family; InterPro: IPR011852 This family is one of at least three major families of extracytoplasmic solute receptor (ESR) for TRAP (Tripartite ATP-independent Periplasmic Transporter) transporters. The others are the DctP (IPR004682 from INTERPRO) and SmoM (IPR004682 from INTERPRO) families. These transporters are secondary (driven by an ion gradient) but composed of three polypeptides, although in some species the 4-TM and 12-TM integral membrane proteins are fused. Substrates for this transporter family are not fully characterised but, besides C4 dicarboxylates, may include mannitol and other compounds ..
Probab=94.34 E-value=0.14 Score=30.37 Aligned_cols=184 Identities=18% Similarity=0.175 Sum_probs=97.0
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 91389999999999998401244216899985794999871789883068898988015099999999996798220259
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQY 80 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~ 80 (342)
|++......+.+.......+.. ....+++++... .|.+--....+|+.+...... ..++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~---------~g~~~~~~~~~~~~~~~~~~~-~~~~~~ 61 (319)
T TIGR02122 1 MKKRLALLGAALLIVGAAAAAA---------EPTFVTIGTGGT---------GGVYYPIGGAIAQLINKALGK-VLRVSA 61 (319)
T ss_pred CCHHHHHHHHHHHHHHHHHHCC---------CCCEEEEECCCC---------CCCCCCCHHHHHHHHHHCCCC-CCEEEE
T ss_conf 9203566776766554443101---------332045521565---------554332013455554210132-202232
Q ss_pred EE-CCCCCCHHHHHCCCEEEEEECCCCCCCC----------HHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEE
Q ss_conf 98-1431002677439627998124325320----------110278435322344023463021134753641786203
Q gi|254780170|r 81 LP-LNAKERFLALQSKQIDILSRNTDWTLLR----------EISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASIC 149 (342)
Q Consensus 81 v~-~~~~~rf~aL~sG~vDil~~~~T~T~~R----------d~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~ 149 (342)
.. ..+......+.+|+.+..+....+...- .....+......|.....+.+++++++++..||.|+++.
T Consensus 62 ~~~~~s~~n~~~~~~~~~~~~~~~~~~~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~gk~~~ 141 (319)
T TIGR02122 62 QSTGGSVENVNLLEAGEAELAIVQSDVAYYAYEGIGEFEFKGPVEKLRALASLYPEYIQIVVRKDSGIKTVADLKGKRVA 141 (319)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCEEEEECCCCCCCHHHHCCCEEC
T ss_conf 11454112333333213455554433344432101110012333200000012454210232011343101220353000
Q ss_pred EEE-CCCHHHHHHHHHHHCCCCC---CEEEECCHHHHHHHHHCCCEEEEEECCHHHHH
Q ss_conf 431-3426999999998629985---07874798999999873960299825047999
Q gi|254780170|r 150 VQA-GTTTELTLADYFKAHNMKY---HPIVFERVEEIDAAYRAHRCDAYTGDISALYA 203 (342)
Q Consensus 150 v~~-GTT~e~~l~~~~~~~~~~~---~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~ 203 (342)
+.. ++-++.+....+...++.. ....+....+...++..+..|+...-.....+
T Consensus 142 ~~~~~sg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~~~ 199 (319)
T TIGR02122 142 VGAPGSGTELNARAVLKAAGLTYDDIKEAEYLGYAEAADALKDGKIDAAFITAGLPTA 199 (319)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHCCCCCEEEECCCCCCC
T ss_conf 2466643013477887650465112001110231000134320231000101344431
No 67
>pfam01634 HisG ATP phosphoribosyltransferase.
Probab=94.26 E-value=0.44 Score=27.19 Aligned_cols=123 Identities=17% Similarity=0.143 Sum_probs=78.5
Q ss_pred CCHHHHHCCCEEEEEECCCCCCCCHHC-----CCCCCCCCCCCCCEEEEEECCCCCCCHHHH-CCCCEEEEECCCHHHHH
Q ss_conf 002677439627998124325320110-----278435322344023463021134753641-78620343134269999
Q gi|254780170|r 87 ERFLALQSKQIDILSRNTDWTLLREIS-----LGLAFRPITYFDGQGFIMHKKKGISSVSQL-SGASICVQAGTTTELTL 160 (342)
Q Consensus 87 ~rf~aL~sG~vDil~~~~T~T~~Rd~~-----~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL-~G~~I~v~~GTT~e~~l 160 (342)
+.-..+..|.+|+-+.+.-|-.|.... +.+.|... ...+.++++..+.+.+|| .|++|+ |.+....
T Consensus 5 DIp~yV~~G~~DlGI~G~D~l~E~~~~~v~~l~dL~fG~c----rl~vA~p~~~~~~~~~dl~~~~rIA----TkYp~it 76 (161)
T pfam01634 5 DIPVFVEDGVVDLGITGEDLVREEELADVEELLDLDFGSC----KLVVAVPESGPYRSPEDLAGGKRIA----TKYPNLA 76 (161)
T ss_pred HHHHHHHCCCCCEEEEEHHHHHCCCCCCEEEEECCCCCCE----EEEEEEECCCCCCCHHHHCCCCEEE----EECHHHH
T ss_conf 8999982899768986722221479787688742687768----9999962777758977954797999----9653999
Q ss_pred HHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCC
Q ss_conf 9999862998507874798999999873960299825047999998367800100256444237
Q gi|254780170|r 161 ADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKS 224 (342)
Q Consensus 161 ~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskE 224 (342)
++||++++++++++.....-|.. -..|-+|+++.=.+.=..++. +..+++.+.+..+
T Consensus 77 ~~~~~~~gi~~~ii~l~GavE~a--P~~g~AD~IvDiv~TG~TLk~-----NgL~~i~~I~~ss 133 (161)
T pfam01634 77 RKYFRKNGIDAEIIKLDGSVEAA--PALGIADAIVDLVSTGETLRA-----NGLKEIETIMDSS 133 (161)
T ss_pred HHHHHHCCCEEEEEECCCCCCCC--CCCCCCCEEEEEECCHHHHHH-----CCCEEEEEEEEEE
T ss_conf 99999819826899755733446--666766689999788899998-----8999917999989
No 68
>pfam01379 Porphobil_deam Porphobilinogen deaminase, dipyromethane cofactor binding domain.
Probab=94.17 E-value=0.44 Score=27.15 Aligned_cols=145 Identities=17% Similarity=0.130 Sum_probs=77.6
Q ss_pred CCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCC-CCCCEEEEEECCCCCCCHHHH-CCCCEEEEECCCHHHHHHHHH
Q ss_conf 002677439627998124325320110278435322-344023463021134753641-786203431342699999999
Q gi|254780170|r 87 ERFLALQSKQIDILSRNTDWTLLREISLGLAFRPIT-YFDGQGFIMHKKKGISSVSQL-SGASICVQAGTTTELTLADYF 164 (342)
Q Consensus 87 ~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~-~~dgq~~lVrk~~~i~s~~dL-~G~~I~v~~GTT~e~~l~~~~ 164 (342)
+.-.+|.+|++|+.+.++--=+... ..++..+.+. --|..-+++-+ ..+++++| .|.+|+ |++-.- +..+
T Consensus 61 ele~aLl~~~iDiAVHS~KDlP~~~-~~~l~i~avl~R~d~rD~Li~~--~~~~l~~lp~ga~IG----TSS~RR-~aql 132 (213)
T pfam01379 61 ELEEALLNGEIDLAVHSLKDVPTEL-PEGLVLGAIPKREDPRDALVSR--NGKSLEDLPEGSVVG----TSSLRR-SAQL 132 (213)
T ss_pred HHHHHHHCCCCCEEEEECCCCCCCC-CCCCEEEEEECCCCHHHHHHCC--CCCCHHHCCCCCEEE----CCCHHH-HHHH
T ss_conf 9999997098787876046577647-9874687664478866644302--676665677676553----253779-9999
Q ss_pred HHCCCCCCEEEECCH-HHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCC----CCCCEEEECCCCCHHHHH
Q ss_conf 862998507874798-999999873960299825047999998367800100256444----237101000277757999
Q gi|254780170|r 165 KAHNMKYHPIVFERV-EEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDII----SKSPLAPAIIQGDTEWYN 239 (342)
Q Consensus 165 ~~~~~~~~~v~~~~~-~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~i----skEPlg~avr~gD~~w~d 239 (342)
+...++.+++....+ +.-++.|.+|++||++--...| .|..+.+.-.+.+-++.+ ..--+|+-+|++|.+-.+
T Consensus 133 ~~~~pdl~~~~iRGNV~TRl~KL~~g~~DaiiLA~Agl--~RL~l~~~i~~~l~~~~~~PA~gQGaIaie~r~~d~~i~~ 210 (213)
T pfam01379 133 KRKRPDLKFEPLRGNVDTRLRKLDEGEYDAIILAAAGL--KRLGLEDRITQSLPPEDMLPAVGQGALAIECRKGDEEILA 210 (213)
T ss_pred HHHCCCCCEEECCCCHHHHHHHHHCCCCCEEEEHHHHH--HHCCCCCCCCEECCHHHCCCHHHHHHEEEEEECCCHHHHH
T ss_conf 98689984677668889999997578987986367678--6668731140671877648837430369988169899999
Q ss_pred HH
Q ss_conf 98
Q gi|254780170|r 240 IV 241 (342)
Q Consensus 240 ~V 241 (342)
++
T Consensus 211 ll 212 (213)
T pfam01379 211 LL 212 (213)
T ss_pred HH
T ss_conf 74
No 69
>CHL00180 rbcR LysR transcriptional regulator; Provisional
Probab=93.97 E-value=0.55 Score=26.57 Aligned_cols=188 Identities=13% Similarity=0.079 Sum_probs=114.2
Q ss_pred HHHHH--HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECC
Q ss_conf 89998--5794999871789883068898988015099999999996798220259981431002677439627998124
Q gi|254780170|r 27 LGDIK--KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNT 104 (342)
Q Consensus 27 Ld~Vk--~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~ 104 (342)
+++++ .+|.|++|+.....-+ +-.++.+.+... . ...++++....+.+.+..|.+|++|+.+..-
T Consensus 86 ~~~~~~~~~g~lrI~~~~s~~~~-----------~lp~~l~~f~~~-~-P~v~i~l~~~~~~~~~~~l~~~~~D~~i~~~ 152 (307)
T CHL00180 86 LEDLKNLQGGTLIIGASQTTGTY-----------LMPRLIGLFRQK-Y-PQIAVQLQVHSTRRIAWSVANGQIDLAIIGG 152 (307)
T ss_pred HHHHHHCCCCCCCCCCCCHHHHH-----------HHHHHHHHHHHH-C-CCCCEEEEECCHHHHHHHHHCCCEEEEEECC
T ss_conf 99875112586010104066666-----------435889999998-8-8997278977999999999879800999757
Q ss_pred CCCCCCHHCCCCCCCCCCCCCCEEEEEECCCC-----CCCHHHHCCCC-EEEEECCCHHHHHHHHHHHCCCCC---CE-E
Q ss_conf 32532011027843532234402346302113-----47536417862-034313426999999998629985---07-8
Q gi|254780170|r 105 DWTLLREISLGLAFRPITYFDGQGFIMHKKKG-----ISSVSQLSGAS-ICVQAGTTTELTLADYFKAHNMKY---HP-I 174 (342)
Q Consensus 105 T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~-----i~s~~dL~G~~-I~v~~GTT~e~~l~~~~~~~~~~~---~~-v 174 (342)
....+. ...+.+. +++.+...++++++.. .-+++||.+.. |+...++.....+..++..+++.. ++ .
T Consensus 153 ~~~~~~--~~~l~~~-~l~~~~~~lv~~~~hpla~~~~v~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (307)
T CHL00180 153 EVPTEL--KDNLQVT-PYAEDELALILPKSHPFAKLKKIQKEDLYRLRFIALDSQSTIRKVIDNILIQNGIDSSRFKIEM 229 (307)
T ss_pred CCCCCC--CCCEEEE-EEECCCEEEEECCCCHHHCCCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 788666--7854999-9432427999738980223999999998179848717999689999999997699845542799
Q ss_pred EECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCCH
Q ss_conf 74798999999873960299825047999998367800100256--44423710100027775
Q gi|254780170|r 175 VFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGDT 235 (342)
Q Consensus 175 ~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD~ 235 (342)
.+.+.+....++.+|-.=++..... .. ..... +..+++| +.-..-+++++.+++..
T Consensus 230 ~~~~~~~l~~~v~~g~Gia~lP~~~---v~-~~~~~-g~l~~~~~~~~~~~r~i~lv~~~~r~ 287 (307)
T CHL00180 230 ELNSIEAIKNAVQSGLGAAFVSVSA---IE-KELEL-GTLHWAKIENITIKRTLSIITNPNRY 287 (307)
T ss_pred EECCHHHHHHHHHHCCEEEECCHHH---HH-HHHHC-CCEEEEECCCCCCEEEEEEEEECCCC
T ss_conf 9780999999999399499825999---99-89877-98899978999850499999979597
No 70
>PRK00072 hemC porphobilinogen deaminase; Reviewed
Probab=93.92 E-value=0.56 Score=26.50 Aligned_cols=146 Identities=18% Similarity=0.115 Sum_probs=77.7
Q ss_pred CCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCC-CCCEEEEEECCCCCCCHHHH-CCCCEEEEECCCHHHHHHHH
Q ss_conf 10026774396279981243253201102784353223-44023463021134753641-78620343134269999999
Q gi|254780170|r 86 KERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITY-FDGQGFIMHKKKGISSVSQL-SGASICVQAGTTTELTLADY 163 (342)
Q Consensus 86 ~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~-~dgq~~lVrk~~~i~s~~dL-~G~~I~v~~GTT~e~~l~~~ 163 (342)
++.-.+|.+|++|+.+.++---+... ..++..+.+.- -|..-++|-+ ..+++++| .|.+|+ |++-.- +..
T Consensus 63 kele~aLl~g~iDiAVHSlKDlPt~~-~~~l~i~avl~R~d~rDvLv~~--~~~~l~~Lp~ga~IG----TSS~RR-~aq 134 (300)
T PRK00072 63 KELEEALLDGEIDIAVHSLKDVPTEL-PEGLVLAAIPEREDPRDAFVSN--DYASLDDLPEGAVVG----TSSLRR-QAQ 134 (300)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCC-CCCCEEEEEECCCCHHHHHHCC--CCCCCCCCCCCCEEE----CCCHHH-HHH
T ss_conf 99999998287552554134578758-9885587655478867853014--667513389998885----046508-999
Q ss_pred HHHCCCCCCEEEECCH-HHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC-C----CCCCCCEEEECCCCCHHH
Q ss_conf 9862998507874798-999999873960299825047999998367800100256-4----442371010002777579
Q gi|254780170|r 164 FKAHNMKYHPIVFERV-EEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILP-D----IISKSPLAPAIIQGDTEW 237 (342)
Q Consensus 164 ~~~~~~~~~~v~~~~~-~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~-e----~iskEPlg~avr~gD~~w 237 (342)
++...++.+++.+..+ +.-+..|.+|++||++--...| .|..+.+.- ..+++ + .-..--+|+-.|++|++.
T Consensus 135 l~~~~pdl~~~~iRGNv~TRl~Kl~~g~~DaiiLA~Agl--~RL~l~~~i-~~~l~~~~~~PA~gQGaiave~r~~d~~~ 211 (300)
T PRK00072 135 LLALRPDLEIKDLRGNVDTRLRKLDEGEYDAIILAAAGL--KRLGLEDRI-TELLDPDEMLPAVGQGALGIECRADDEEI 211 (300)
T ss_pred HHHHCCCCCEEECCCCHHHHHHHHHCCCCCEEEHHHHHH--HHCCCCCCE-EEEECHHHCCCCCCCCEEEEEEECCCHHH
T ss_conf 998679995677668889999997567864542067678--665785421-69855333578546303899994499888
Q ss_pred HHHHH
Q ss_conf 99988
Q gi|254780170|r 238 YNIVS 242 (342)
Q Consensus 238 ~d~V~ 242 (342)
.++++
T Consensus 212 ~~~l~ 216 (300)
T PRK00072 212 LELLA 216 (300)
T ss_pred HHHHH
T ss_conf 87766
No 71
>PRK10682 putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional
Probab=93.62 E-value=0.63 Score=26.18 Aligned_cols=232 Identities=9% Similarity=0.004 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 13899999999999984012442168999857949998717898830688989880150999999999967982202599
Q gi|254780170|r 2 YKDFFVSILCLIILFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYL 81 (342)
Q Consensus 2 ~K~~l~~~l~l~~~~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v 81 (342)
.||+|..++++.++++++.+++++ .++|++-.-.+|- |-|+.....++-+ .||++.
T Consensus 5 ~~~~~~~l~~~~~~~~~~~~~aa~-------~~~Lnv~nW~~Yi--------------~p~~i~~FeketG---ikV~~~ 60 (370)
T PRK10682 5 NKKWLSGLVAGALMAVSVGTLAAE-------QKTLHIYNWSDYI--------------APDTVANFEKETG---IKVVYD 60 (370)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHC-------CCEEEEECCCCCC--------------CHHHHHHHHHHHC---CEEEEE
T ss_conf 788999999999999852056642-------7979998167657--------------9779999999979---889999
Q ss_pred ECCCCCC-HHHHHCCC--EEEEEECCCCCCCCH------------------------------HCCCCCCCCCCCCCCEE
Q ss_conf 8143100-26774396--279981243253201------------------------------10278435322344023
Q gi|254780170|r 82 PLNAKER-FLALQSKQ--IDILSRNTDWTLLRE------------------------------ISLGLAFRPITYFDGQG 128 (342)
Q Consensus 82 ~~~~~~r-f~aL~sG~--vDil~~~~T~T~~Rd------------------------------~~~~v~Fs~~~~~dgq~ 128 (342)
..++.+. +.-|++|. +||++.+... .+|- ...+-.|+.||.+-..|
T Consensus 61 ~~~snee~~akl~ag~~gyDvv~ps~~~-v~~~~~~gll~pLD~sklpN~~ni~p~~~~~~~~~dpg~~YsVPy~wGt~G 139 (370)
T PRK10682 61 VFDSNEVLEGKLMAGSTGFDLVVPSASF-LERQLTAGVFQPLDKSKLPNWKNLDPELLKLVAKHDPDNKYAMPYMWATTG 139 (370)
T ss_pred ECCCHHHHHHHHHCCCCCCCEEEECHHH-HHHHHHCCCCCCCCHHHCCCHHHCCHHHHHHHHCCCCCCEEEEEEEECCEE
T ss_conf 5499899999996699999889977799-999997698464770008674442999884100369997599888842259
Q ss_pred EEEECC---------CCCCCHHHHC-----CC----CEEEE-----------------ECCCHHHHH----HHHHHHCCC
Q ss_conf 463021---------1347536417-----86----20343-----------------134269999----999986299
Q gi|254780170|r 129 FIMHKK---------KGISSVSQLS-----GA----SICVQ-----------------AGTTTELTL----ADYFKAHNM 169 (342)
Q Consensus 129 ~lVrk~---------~~i~s~~dL~-----G~----~I~v~-----------------~GTT~e~~l----~~~~~~~~~ 169 (342)
|..+++ ..++++++|- +| .|++. ..++....+ .+.+.+...
T Consensus 140 I~Yn~d~v~~~~g~~~p~~sW~~l~~P~~~~k~k~~~v~~ld~~~~~~~~aL~~lG~~~n~~~~~d~~~aa~~~L~~~kp 219 (370)
T PRK10682 140 IGYNVDKVKAVLGEDAPVDSWDLVLKPENLEKLKSCGVSFLDAPEEIFATVLNYLGKDPNSTKADDYTGPATDLLLKLRP 219 (370)
T ss_pred EEEECCCCCCCCCCCCCCCHHHHHHCHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCH
T ss_conf 99976544223467888462998649275653035855897688899999999769998999999999999999997122
Q ss_pred CCCEEEECCHHHHHHHHHCCCEEEEEECCH-HH-HHHHHHC-CCC--HHHCCCCC-CCCCCCEEEECCCCCHHHHH---H
Q ss_conf 850787479899999987396029982504-79-9999836-780--01002564-44237101000277757999---9
Q gi|254780170|r 170 KYHPIVFERVEEIDAAYRAHRCDAYTGDIS-AL-YALKLTN-DRP--SEHVILPD-IISKSPLAPAIIQGDTEWYN---I 240 (342)
Q Consensus 170 ~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s-~L-a~~~~~~-~~p--~~~~il~e-~iskEPlg~avr~gD~~w~d---~ 240 (342)
. +..|.+ ++....+.+|++.+...=.. .+ +..+... .++ =.|+ +|+ ...-=-=.++++++=+.=-. +
T Consensus 220 ~--v~~~~s-~~~~~~l~~Gei~~a~~wsGd~~~~~~~~~~~~~~~~i~yv-~PkEG~~~w~D~~~Ipk~A~n~~~A~~F 295 (370)
T PRK10682 220 N--IRYFHS-SQYINDLANGDICVAIGWAGDVWQASNRAKEAKNGVNVSFS-IPKEGAMAFFDVFAMPADAKNKDEAYQF 295 (370)
T ss_pred H--CCEECC-CHHHHHHHCCCEEEEEEECHHHHHHHHHHHHCCCCCEEEEE-ECCCCCEEEEEEEEEECCCCCHHHHHHH
T ss_conf 2--441037-28899985486799997408999999999863578706998-1588745888788886899996999999
Q ss_pred HHHHHHH---HHHHHHHHCCHHHHH
Q ss_conf 8877443---311212330152089
Q gi|254780170|r 241 VSWTHYA---MVTAEELGITQKNIN 262 (342)
Q Consensus 241 V~W~~~a---li~Aee~git~~nv~ 262 (342)
.+|.+.- -..+++.|-.+.|..
T Consensus 296 Inf~l~Pe~aa~~~~~~~y~~~n~~ 320 (370)
T PRK10682 296 LNYLLRPDVIAHISDHVFYANANKA 320 (370)
T ss_pred HHHHCCHHHHHHHHHHHCCCCHHHH
T ss_conf 9985097999999986478875389
No 72
>PRK01066 porphobilinogen deaminase; Provisional
Probab=93.42 E-value=0.68 Score=25.96 Aligned_cols=141 Identities=16% Similarity=0.083 Sum_probs=79.1
Q ss_pred CHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCC-CCCEEEEEECCCCCCCHHHH-CCCCEEEEECCCHHHHHHHHHH
Q ss_conf 026774396279981243253201102784353223-44023463021134753641-7862034313426999999998
Q gi|254780170|r 88 RFLALQSKQIDILSRNTDWTLLREISLGLAFRPITY-FDGQGFIMHKKKGISSVSQL-SGASICVQAGTTTELTLADYFK 165 (342)
Q Consensus 88 rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~-~dgq~~lVrk~~~i~s~~dL-~G~~I~v~~GTT~e~~l~~~~~ 165 (342)
.-.+|.+|++|+.+.++--=++ ..+..+..+.- -|..-++|-+ .-.++.+| .|.+| ||++-.- +..++
T Consensus 81 le~aLl~g~iDiAVHSlKDlP~---~~~l~i~av~~R~d~rDvLv~~--~~~~l~~lp~~a~I----GTSS~RR-~aql~ 150 (234)
T PRK01066 81 VDFLVLSGKCDLAIHSAKDLPE---PPKLTVVAITAGLDPSDLLVYA--EKYLLQPLPKRPRI----GSSSLRR-EELLK 150 (234)
T ss_pred HHHHHHCCCCCEEEEECCCCCC---CCCCEEEEEECCCCHHHHHHCC--CCCCCCCCCCCCEE----ECCCHHH-HHHHH
T ss_conf 9999976987789871578899---9997689996578988887604--67641228866877----3166619-99999
Q ss_pred HCCCCCCEEEECCH-HHHHHHHHCCCEEEEEECCHHHHH-HHHHCCCCHHHCCCCCCC--CCCCEEEECCCCCHHHHHHH
Q ss_conf 62998507874798-999999873960299825047999-998367800100256444--23710100027775799998
Q gi|254780170|r 166 AHNMKYHPIVFERV-EEIDAAYRAHRCDAYTGDISALYA-LKLTNDRPSEHVILPDII--SKSPLAPAIIQGDTEWYNIV 241 (342)
Q Consensus 166 ~~~~~~~~v~~~~~-~~a~~al~~Gr~DA~~~D~s~La~-~~~~~~~p~~~~il~e~i--skEPlg~avr~gD~~w~d~V 241 (342)
...++.+++.+..+ +.-+..|.+|++||++--. || .|..+..+. ..+||..+ ..--+|+-.|++|.++..++
T Consensus 151 ~~~pdl~i~~iRGNI~TRl~Kl~~g~~DaiILA~---AGL~RLgl~~~~-~~~lp~~~~pgQGalaIe~R~dD~~~~~ll 226 (234)
T PRK01066 151 LLFPSGIILDIRGTIEERLKLLERGKYDAIVVAK---AAVLRLGLRLPY-TIELPPPYHPLQGRLAITAKKHIAKWKTLF 226 (234)
T ss_pred HHCCCCCEEECCCCHHHHHHHHCCCCCCEEEHHH---HHHHHCCCCCCC-EEECCCCCCCCCCCEEEEECCCCHHHHHHH
T ss_conf 8789997896408999999986178989533898---999875897754-585589887886828899807979999999
Q ss_pred H
Q ss_conf 8
Q gi|254780170|r 242 S 242 (342)
Q Consensus 242 ~ 242 (342)
+
T Consensus 227 ~ 227 (234)
T PRK01066 227 L 227 (234)
T ss_pred H
T ss_conf 9
No 73
>PRK11480 tauA taurine transporter substrate binding subunit; Provisional
Probab=93.25 E-value=0.41 Score=27.34 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=12.2
Q ss_pred HHHHHHHCCHHHHHHHHHCCCCH
Q ss_conf 11212330152089886226717
Q gi|254780170|r 249 VTAEELGITQKNINQVSKDTTNP 271 (342)
Q Consensus 249 i~Aee~git~~nv~~~~~~s~~p 271 (342)
..|.+.|++.+++...++...-|
T Consensus 251 ~iAk~~G~~~~~~~~~l~~~~f~ 273 (320)
T PRK11480 251 KLARLSGVPEGDVPGLVKGNTYL 273 (320)
T ss_pred HHHHHHCCCHHHHHHHHHCCCCC
T ss_conf 99999598988999997368778
No 74
>TIGR03339 phn_lysR aminoethylphosphonate catabolism associated LysR family transcriptional regulator. This group of sequences represents a number of related clades with numerous examples of members adjacent to operons for the degradation of 2-aminoethylphosphonate (AEP) in Pseudomonas, Ralstonia, Bordetella and Burkholderia species. These are transcriptional regulators of the LysR family which contain a helix-turn-helix (HTH) domain (pfam00126) and a periplasmic substrate-binding protein-like domain (pfam03466).
Probab=93.03 E-value=0.78 Score=25.59 Aligned_cols=172 Identities=16% Similarity=0.140 Sum_probs=107.4
Q ss_pred CCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHH
Q ss_conf 79499987178988306889898801509999999999679822025998143100267743962799812432532011
Q gi|254780170|r 33 RGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREI 112 (342)
Q Consensus 33 rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~ 112 (342)
.|.|++|+... + +-.++...+...- ....+++......+.+..|.+|++|+.+..... .
T Consensus 86 ~g~l~ig~~~~---~-----------~l~~~l~~f~~~~--P~v~i~i~~~~~~~~~~~L~~~~~Di~i~~~~~---~-- 144 (279)
T TIGR03339 86 EGSLRIAATAP---Y-----------YVLDLVARFRQRY--PGIEVSVRIGNSQEVLQALQSYRVDVAVSSEVV---D-- 144 (279)
T ss_pred CCEEEECCCHH---H-----------HHHHHHHHHHHHC--CCCCEEEEECCHHHHHHHHHCCCEEEEEECCCC---C--
T ss_conf 45168617517---7-----------8999999999858--986057895580877754025965899972788---9--
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCC-----CCCHHHHCCCC-EEEEECCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHHH
Q ss_conf 027843532234402346302113-----47536417862-034313426999999998629985078-74798999999
Q gi|254780170|r 113 SLGLAFRPITYFDGQGFIMHKKKG-----ISSVSQLSGAS-ICVQAGTTTELTLADYFKAHNMKYHPI-VFERVEEIDAA 185 (342)
Q Consensus 113 ~~~v~Fs~~~~~dgq~~lVrk~~~-----i~s~~dL~G~~-I~v~~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~~a 185 (342)
..++.+ .+.+-+.-.++++++.. --+++||.+.. |....++.....+.+++...++..+++ ..++.......
T Consensus 145 ~~~~~~-~~l~~~~~~~~~~~~~~la~~~~i~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (279)
T TIGR03339 145 DPRLDR-VVLGNDPLVAVVHRQHPLAERESVTLEELAGQPLLMREPGSVTRQTTEEALAAAGVAPRPALEIGSREAIREA 223 (279)
T ss_pred CCCEEE-EEEECCCEEEEEECCCHHHCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHH
T ss_conf 998399-9940444899991886332399999999769998982899839999999999779987536778969999999
Q ss_pred HHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCC
Q ss_conf 873960299825047999998367800100256--4442371010002777
Q gi|254780170|r 186 YRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGD 234 (342)
Q Consensus 186 l~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD 234 (342)
..+|--=++.-+.. .. .+| +.+++| +..-+=++..+.+++-
T Consensus 224 v~~G~GiailP~~~---v~----~~~-~l~~~pl~~~~~~~~~~l~~~~~r 266 (279)
T TIGR03339 224 VLAGLGVSVVSAAE---VG----RDP-RLRVLPIVGAEPTMDEYLYCLKER 266 (279)
T ss_pred HHHCCEEEEEEHHH---HH----HCC-CEEEEECCCCCCCCEEEEEEECCC
T ss_conf 99799389714899---61----098-989998988898627999998998
No 75
>TIGR02285 TIGR02285 conserved hypothetical protein; InterPro: IPR011972 Members of this family are found in several Proteobacteria, including Pseudomonas putida (strain KT2440), Bdellovibrio bacteriovorus HD100 (three members), Aeromonas hydrophila, and Chromobacterium violaceum ATCC 12472. The function is unknown..
Probab=92.86 E-value=0.82 Score=25.44 Aligned_cols=202 Identities=14% Similarity=0.084 Sum_probs=114.5
Q ss_pred EEEEEEECCCCCCEEECCC------CCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCC
Q ss_conf 4999871789883068898------9880150999999999967982202599814310026774396279981243253
Q gi|254780170|r 35 FLKCGINTGLVGFAEVKAN------GDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTL 108 (342)
Q Consensus 35 ~L~vGv~~~~ppfs~~d~~------G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~ 108 (342)
.|.. +..|.|||--.+.. -+=+|.-=.+-..|-++ +-. -.-+|+.++.+=....+|+++--+.-.++=+|+
T Consensus 20 ~I~W-~~~D~PPf~I~~G~Gmmvdi~~grG~~D~~~~~i~r~-lP~-Y~H~~~~~~~aR~~~~~Q~~~~~~C~~~ll~TP 96 (293)
T TIGR02285 20 AITW-IVSDLPPFFIFDGPGMMVDIKKGRGVLDVVLKLIRRK-LPE-YEHRIVRVSVARSLKMLQQGKAVVCDVNLLKTP 96 (293)
T ss_pred CCEE-EEECCCCEEEEECCCEEEEECCCCCCCHHHHHHHHHH-CCC-CCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 1115-1114787268708802897316887203367999983-654-751389986678999986388602155144786
Q ss_pred CCHHCCCCCCC--CCCCCC-CEEEEEECCCC--CC--------CHHHH---CCCCEEEEECCCHHHHHHHHHHHCCCC--
Q ss_conf 20110278435--322344-02346302113--47--------53641---786203431342699999999862998--
Q gi|254780170|r 109 LREISLGLAFR--PITYFD-GQGFIMHKKKG--IS--------SVSQL---SGASICVQAGTTTELTLADYFKAHNMK-- 170 (342)
Q Consensus 109 ~Rd~~~~v~Fs--~~~~~d-gq~~lVrk~~~--i~--------s~~dL---~G~~I~v~~GTT~e~~l~~~~~~~~~~-- 170 (342)
||++= +-|| .+.+.. ..++++++... +. ++..| .+++..+.+|=++-..+-+.++.++-+
T Consensus 97 EReK~--~~Fstf~~~~~~~p~glv~~~~~~~~~~~~~~G~~VdL~~Ll~~~~~~~~~~a~RsYg~~ID~~L~~~~~~~~ 174 (293)
T TIGR02285 97 EREKF--LIFSTFDPTLVVLPVGLVLRKELAAEVRDLADGDDVDLKKLLASKKLRLGVIASRSYGAQIDDILKDKKDKKN 174 (293)
T ss_pred CHHHH--EECCHHHHHHHHCCCCEEECCCCCCCCCHHCCCCCHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCCC
T ss_conf 15432--0001247898647842365222232351120676101788731888644788630115789999973689624
Q ss_pred CCEEEECCHHH-HHHHHHCCCEEEEEECCHHHHH-HH-------------HHCCCCHHHCCCCCCCCCCCEEEECCCCCH
Q ss_conf 50787479899-9999873960299825047999-99-------------836780010025644423710100027775
Q gi|254780170|r 171 YHPIVFERVEE-IDAAYRAHRCDAYTGDISALYA-LK-------------LTNDRPSEHVILPDIISKSPLAPAIIQGDT 235 (342)
Q Consensus 171 ~~~v~~~~~~~-a~~al~~Gr~DA~~~D~s~La~-~~-------------~~~~~p~~~~il~e~iskEPlg~avr~gD~ 235 (342)
.+.+.=....+ .+..|..||++.+..=...... .+ .....-.++..||-.=.-.-....|.=--+
T Consensus 175 ~~~~~n~~~~nGl~~mL~~~R~~~tL~Y~~E~~Yy~~skfGyGsstvsdl~~~~~~~~~~~lpv~g~~~~i~v~vaCpkt 254 (293)
T TIGR02285 175 SRVIGNAASGNGLFKMLEKGRVQYTLAYPPEVVYYEESKFGYGSSTVSDLQKKGALAPLKFLPVAGVAAEISVVVACPKT 254 (293)
T ss_pred CCEECCCCCHHHHHHHHHCCCCCEEECCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEEECCC
T ss_conf 22205553035799997524333031452332444431145551468888724577881264004777677899840888
Q ss_pred HHHHHH
Q ss_conf 799998
Q gi|254780170|r 236 EWYNIV 241 (342)
Q Consensus 236 ~w~d~V 241 (342)
+|-+-|
T Consensus 255 ~wG~~~ 260 (293)
T TIGR02285 255 EWGRKV 260 (293)
T ss_pred HHHHHH
T ss_conf 778999
No 76
>PRK09986 DNA-binding transcriptional activator XapR; Provisional
Probab=92.69 E-value=0.87 Score=25.29 Aligned_cols=177 Identities=10% Similarity=-0.004 Sum_probs=106.1
Q ss_pred HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH
Q ss_conf 57949998717898830688989880150999999999967982202599814310026774396279981243253201
Q gi|254780170|r 32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE 111 (342)
Q Consensus 32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd 111 (342)
.+|.|++|+...... ++=.++.+.+.++- ....+++...+..+.+..|.+|++|+.+..+... .
T Consensus 79 ~~g~l~Ig~~~~~~~-----------~~l~~~l~~f~~~~--P~i~v~i~~~~~~~~~~~l~~~~~D~a~~~~~~~--~- 142 (278)
T PRK09986 79 EAGRIELGVVGTALW-----------GRMRPAMRHFLKEN--PNVEVLFREKSPSMQMALLERRELDAGIWRMALE--P- 142 (278)
T ss_pred CCCCEEEEECHHHHH-----------HHHHHHHHHHHHHC--CCEEEEEEECCHHHHHHHHHCCCCCEEEECCCCC--C-
T ss_conf 777336874216888-----------76428999999878--9839999978869999999779975899637777--8-
Q ss_pred HCCCCCCCCCCCCCCEEEEEECCCC-----CCCHHHHCCCCEEE-EECCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHH
Q ss_conf 1027843532234402346302113-----47536417862034-313426999999998629985078-7479899999
Q gi|254780170|r 112 ISLGLAFRPITYFDGQGFIMHKKKG-----ISSVSQLSGASICV-QAGTTTELTLADYFKAHNMKYHPI-VFERVEEIDA 184 (342)
Q Consensus 112 ~~~~v~Fs~~~~~dgq~~lVrk~~~-----i~s~~dL~G~~I~v-~~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~~ 184 (342)
..++.+- +.+.+.-.++++++.. .-+++||.+..... ..+.+.-..+.+.+...+...+++ .+++......
T Consensus 143 -~~~~~~~-~l~~~~~~~~~~~~hpla~~~~i~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 220 (278)
T PRK09986 143 -NPGFTSL-RLHESAFAVAVPEEHLLASKSSVPLKALRNEYFVTLPSVHSDWGFLQRVCQQAGFSPQIIREVNEPQTVLA 220 (278)
T ss_pred -CCCCEEE-EEEECCCEEEECCCCCCCCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHH
T ss_conf -8774268-87741637996598733369999999985999798679986699999999977998517999998999999
Q ss_pred HHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCC
Q ss_conf 9873960299825047999998367800100256--4442371010002777
Q gi|254780170|r 185 AYRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGD 234 (342)
Q Consensus 185 al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD 234 (342)
...+|..=++..+.. + ....+ +.+++| +.+.. .++.+.|++.
T Consensus 221 ~V~~G~Giailp~~~--~----~~~~~-~v~~~Pl~~~~~~-~~~lv~~~~~ 264 (278)
T PRK09986 221 MVSMGIGITLVADSY--A----QMPWP-GVVFRPLKERIPA-DLYIVYHQQQ 264 (278)
T ss_pred HHHHCCEEEEEHHHH--H----CCCCC-CEEEEECCCCCCE-EEEEEECCCC
T ss_conf 999799899841777--4----23789-9999988999803-8999984999
No 77
>TIGR00787 dctP TRAP transporter solute receptor, DctP family; InterPro: IPR004682 TRAP-T family proteins generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-positive bacteria and archaea. Only one member of the family has been both sequenced and functionally characterised. This system is the DctPQM system of Rhodobacter capsulatus. DctP is a periplasmic dicarboxylate (malate, fumarate, succinate) binding receptor that is biochemically well-characterised.; GO: 0006810 transport, 0030288 outer membrane-bounded periplasmic space.
Probab=92.67 E-value=0.097 Score=31.32 Aligned_cols=189 Identities=19% Similarity=0.201 Sum_probs=106.6
Q ss_pred CCCEEEEHHH-HHHHHHHHHCCCCCEEEEEE----C--CCCCCHHHHHCCCEEEEEECCCCCCCC-H-------------
Q ss_conf 8988015099-99999999679822025998----1--431002677439627998124325320-1-------------
Q gi|254780170|r 53 NGDWKGFDVD-FCRALSSAIFDDPSKIQYLP----L--NAKERFLALQSKQIDILSRNTDWTLLR-E------------- 111 (342)
Q Consensus 53 ~G~~~GfDVD-l~raiAaal~gd~~kVe~v~----~--~~~~rf~aL~sG~vDil~~~~T~T~~R-d------------- 111 (342)
...+.|--.+ |++.|.+.--|. .+|+.-| - +..+-+.+|+.|.+|+.+.+.+....= .
T Consensus 7 ~~~p~~~AA~~Fa~lv~e~t~G~-~~i~~~P~s~LgPa~D~~~~~~l~~G~~d~~~~s~~~f~~la~p~~~v~dlPflF~ 85 (267)
T TIGR00787 7 RSTPKHKAAEKFAKLVEEKTKGE-IKISVFPSSQLGPASDREMLEALRGGALDMTAPSSSKFTPLASPELAVLDLPFLFK 85 (267)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCE-EEEEECCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHCCCHHHH
T ss_conf 99716589999999999865885-78997576347887769999984089548972576754233300687716762431
Q ss_pred ----------------------HCC--CCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHC
Q ss_conf ----------------------102--78435322344023463021134753641786203431342699999999862
Q gi|254780170|r 112 ----------------------ISL--GLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAH 167 (342)
Q Consensus 112 ----------------------~~~--~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~ 167 (342)
... ++- .--|+..|...+.-+...|++++|++|.||-++..-+.+ +.++.-
T Consensus 86 d~~~~~Kvl~G~~vG~~L~~~~e~~~LG~~-~L~~w~nG~R~~t~~~~p~~~p~D~kGLKiRi~~s~~~~----~~~~~l 160 (267)
T TIGR00787 86 DTNHVHKVLDGSEVGKELLKSLEKKNLGLK-GLAYWDNGFRQFTSSKKPVTKPEDLKGLKIRIPASPVLE----AQFKAL 160 (267)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-CHHHHHCCHHHHHCCCCCCCCCHHHCCCCCCCCCCHHHH----HHHHHC
T ss_conf 489999873665889999998887632400-003323314542214341246033258740259868999----999970
Q ss_pred CCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHH----HHHH
Q ss_conf 998507874798999999873960299825047999998367800100256444237101000277757999----9887
Q gi|254780170|r 168 NMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYN----IVSW 243 (342)
Q Consensus 168 ~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d----~V~W 243 (342)
|-.=+++ ...|.+.||++|-+||==.-.+...+.+.- +=.+|.-+-. ...+||..++ ++.-|.. +=+-
T Consensus 161 GA~P~~~---~F~EvY~ALq~gvVDgqENP~s~~~s~KlY--EVqKyL~~tn-H~y~g~~v~~--n~~~w~~L~~dl~~~ 232 (267)
T TIGR00787 161 GANPEPM---AFSEVYTALQTGVVDGQENPLSNIYSSKLY--EVQKYLSLTN-HGYLGYLVVV--NKAFWKSLPPDLQAV 232 (267)
T ss_pred CCCCCCC---CHHHHHHHHHCCCCCCCCCCHHHHHHHHHH--HHHHHHHHHH-HHHCCCCEEE--EHHHHHCCCHHHHHH
T ss_conf 8998412---658999987548101004672776210212--3643453310-3032620275--036743187889999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 744331121233
Q gi|254780170|r 244 THYAMVTAEELG 255 (342)
Q Consensus 244 ~~~ali~Aee~g 255 (342)
+..||=+|-++-
T Consensus 233 ~~~A~~ea~~~~ 244 (267)
T TIGR00787 233 VKEAAKEATEYQ 244 (267)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999988
No 78
>PRK10341 DNA-binding transcriptional activator TdcA; Provisional
Probab=92.55 E-value=0.91 Score=25.17 Aligned_cols=159 Identities=8% Similarity=0.063 Sum_probs=97.5
Q ss_pred CEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCC---CCCCHHHHCCCCEEE-E
Q ss_conf 202599814310026774396279981243253201102784353223440234630211---347536417862034-3
Q gi|254780170|r 76 SKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKK---GISSVSQLSGASICV-Q 151 (342)
Q Consensus 76 ~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~---~i~s~~dL~G~~I~v-~ 151 (342)
.++++...+..+....|.+|++|+.++...-.. . ...+.+. +.|.+.-.++++++. +..++++|.+..... .
T Consensus 126 v~i~l~~~~~~~~~~~l~~g~~D~~i~~~~~~~-~--~~~~~~~-~l~~~~~~lv~~~~~p~~~~~~l~~L~~~~~il~~ 201 (312)
T PRK10341 126 AQVSMYEAQLSSFLPAIRDGRLDFAIGTLSNEM-K--LQDLHVE-PLFESEFVLVASKSRTCTGTTTLESLKNEQWVLPQ 201 (312)
T ss_pred CEEEEEECCHHHHHHHHHCCCCEEEEEECCCCC-C--CCCEEEE-EEECCCEEEEECCCCCCCCCCCHHHHCCCCEEEEC
T ss_conf 779999899999999996698619997436877-7--7874999-95124289997675423489798998079868606
Q ss_pred ECCCHHHHHHHHHHHCCCCCCE-EEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEE
Q ss_conf 1342699999999862998507-874798999999873960299825047999998367800100256--4442371010
Q gi|254780170|r 152 AGTTTELTLADYFKAHNMKYHP-IVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAP 228 (342)
Q Consensus 152 ~GTT~e~~l~~~~~~~~~~~~~-v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~ 228 (342)
.++.....+.++++..++..+. +..++.........+|-.=++... .++. .+.+ ++.+.+| +.+-.-.++.
T Consensus 202 ~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~~i~~lv~~g~gi~~lP~--~~~~---~~~~-~~L~~lpl~~~~~~~~~~l 275 (312)
T PRK10341 202 TNMGYYSELLTTLQRNGISIENIVKTDSVVTIYNLVLNADFLTVIPC--DMTS---PFGS-NQFITIPIKETLPVARYAA 275 (312)
T ss_pred CCCCHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHCCEEEEEHH--HHHH---HHCC-CCEEEEECCCCCCEEEEEE
T ss_conf 99858999999999769998816998909999999997995897269--9996---6318-9899998999885118999
Q ss_pred ECCCCCHHHHHHHHHHH
Q ss_conf 00277757999988774
Q gi|254780170|r 229 AIIQGDTEWYNIVSWTH 245 (342)
Q Consensus 229 avr~gD~~w~d~V~W~~ 245 (342)
+.+++-. ....++|-+
T Consensus 276 v~~k~~~-ls~a~~~fi 291 (312)
T PRK10341 276 VWSKNYR-IKKAASVLV 291 (312)
T ss_pred EEECCCC-CCHHHHHHH
T ss_conf 9989398-899999999
No 79
>cd00494 HMBS Hydroxymethylbilane synthase (HMBS), also known as porphobilinogen deaminase (PBGD), is an intermediate enzyme in the biosynthetic pathway of tetrapyrrolic ring systems, such as heme, chlorophylls, and vitamin B12. HMBS catalyzes the conversion of porphobilinogen (PBG) into hydroxymethylbilane (HMB). HMBS consists of three domains, and is believed to bind substrate through a hinge-bending motion of domains I and II. HMBS is found in all organisms except viruses.
Probab=92.45 E-value=0.93 Score=25.09 Aligned_cols=146 Identities=19% Similarity=0.168 Sum_probs=78.3
Q ss_pred CCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCC-CCCEEEEEECCCCCCCHHHH-CCCCEEEEECCCHHHHHHHH
Q ss_conf 10026774396279981243253201102784353223-44023463021134753641-78620343134269999999
Q gi|254780170|r 86 KERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITY-FDGQGFIMHKKKGISSVSQL-SGASICVQAGTTTELTLADY 163 (342)
Q Consensus 86 ~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~-~dgq~~lVrk~~~i~s~~dL-~G~~I~v~~GTT~e~~l~~~ 163 (342)
++.-.+|.+|++|+.+.++---+... ..++.++.+.- -|..-++|-+ ...++.+| +|.+|+ |++-.- +..
T Consensus 59 kele~aLl~g~iDiAVHSlKDlPt~~-~~gl~i~avl~R~dprDvlv~~--~~~~l~~lp~ga~IG----TSS~RR-~aq 130 (292)
T cd00494 59 KELEEALLNGEIDLAVHSLKDVPTEL-PEGLVLGAIPKREDPRDALVSR--NGSSLEDLPAGSVVG----TSSLRR-QAQ 130 (292)
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCC-CCCCEEEEEECCCCCCCHHHCC--CCHHHHCCCCCCEEE----ECCCCH-HHH
T ss_conf 99999997098787986046577747-9874687663478822244406--400221289898785----147437-999
Q ss_pred HHHCCCCCCEEEECCH-HHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHH-----CCCCCCCCCCCEEEECCCCCHHH
Q ss_conf 9862998507874798-99999987396029982504799999836780010-----02564442371010002777579
Q gi|254780170|r 164 FKAHNMKYHPIVFERV-EEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEH-----VILPDIISKSPLAPAIIQGDTEW 237 (342)
Q Consensus 164 ~~~~~~~~~~v~~~~~-~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~-----~il~e~iskEPlg~avr~gD~~w 237 (342)
++...++.+++.+..+ +.-+..|.+|++||++--...| .|..+.+.-.+ .++| .-..--+|+-+|++|++-
T Consensus 131 l~~~~pdl~i~~iRGNV~TRl~KL~~g~~DaiILA~AGL--~RLgl~~~i~~~l~~~~~~P-A~gQGaiave~r~~d~~~ 207 (292)
T cd00494 131 LKRKRPDLKFEPLRGNVDTRLRKLDEGEYDAIILAAAGL--KRLGLEDRITQYLSPEVMLP-AVGQGALAIECRKGDEEL 207 (292)
T ss_pred HHHHCCCCCEEECCCCHHHHHHHHHCCCCCEEEEHHHHH--HHCCCCCCCCCCCCHHCCCC-CCCCCEEEEEEECCCHHH
T ss_conf 998689995467658899999985167874775446567--55478420230036310788-766530688872489888
Q ss_pred HHHHH
Q ss_conf 99988
Q gi|254780170|r 238 YNIVS 242 (342)
Q Consensus 238 ~d~V~ 242 (342)
.++++
T Consensus 208 ~~~l~ 212 (292)
T cd00494 208 LALLK 212 (292)
T ss_pred HHHHH
T ss_conf 88887
No 80
>pfam03180 Lipoprotein_9 NLPA lipoprotein. This family of bacterial lipoproteins contains several antigenic members, that may be involved in bacterial virulence. Their precise function is unknown. However they are probably distantly related to pfam00497 which are solute binding proteins.
Probab=91.98 E-value=0.18 Score=29.55 Aligned_cols=91 Identities=12% Similarity=0.110 Sum_probs=59.6
Q ss_pred CEEEEECCCHHH--HHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECC-HHHHHHHHHCCCCHHHCCCCCCCCC
Q ss_conf 203431342699--9999998629985078747989999998739602998250-4799999836780010025644423
Q gi|254780170|r 147 SICVQAGTTTEL--TLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDI-SALYALKLTNDRPSEHVILPDIISK 223 (342)
Q Consensus 147 ~I~v~~GTT~e~--~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~-s~La~~~~~~~~p~~~~il~e~isk 223 (342)
|||+..|.-.|. .++..+++.|++++++.|.++.+.-.||.+|.+||=..-. +-|... ...+..+.+.+.. ..-
T Consensus 2 kvG~~~~p~~~i~~~v~~~~~~~Gi~veiv~F~Dy~~pN~AL~~GeIDaN~fQH~~yl~~~--n~~~g~~L~~v~~-~~~ 78 (236)
T pfam03180 2 KVGATPGPHAEVLEVAKPLAKKKGLDLEIVEFTDYVQPNTALADGEIDANAFQHLPYLDQF--NKEGGLDLVAVGN-THV 78 (236)
T ss_pred EEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHCCCCCHHHHCCHHHHHHH--HHHCCCCEEEEEE-EEE
T ss_conf 8964389769999999999996498799998168645507977899552444389999999--9977996799630-467
Q ss_pred CCEEE-----------------ECCCCCHHHHHH
Q ss_conf 71010-----------------002777579999
Q gi|254780170|r 224 SPLAP-----------------AIIQGDTEWYNI 240 (342)
Q Consensus 224 EPlg~-----------------avr~gD~~w~d~ 240 (342)
+|+|+ +++.+-+.....
T Consensus 79 ~p~glYS~k~ksl~~lp~Ga~IaIpnD~sN~~RA 112 (236)
T pfam03180 79 EPIGLYSKKYKSLSELPDGATIAVPNDPSNEGRA 112 (236)
T ss_pred CCEEEEECCCCCHHHCCCCCEEEECCCCCHHHHH
T ss_conf 2379543376887585799989815884429999
No 81
>PRK11151 DNA-binding transcriptional regulator OxyR; Provisional
Probab=91.64 E-value=1.2 Score=24.51 Aligned_cols=179 Identities=10% Similarity=0.044 Sum_probs=105.1
Q ss_pred CCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHH
Q ss_conf 79499987178988306889898801509999999999679822025998143100267743962799812432532011
Q gi|254780170|r 33 RGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREI 112 (342)
Q Consensus 33 rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~ 112 (342)
+|.|++|+.+....+ +-.++...+.+. . ...++++......+.+..|.+|++|+.+.... ..
T Consensus 90 ~G~lrig~~~~~~~~-----------llp~~l~~f~~~-~-P~v~i~l~~~~~~~l~~~l~~g~~D~~i~~~~--~~--- 151 (305)
T PRK11151 90 SGPLHIGLIPTVGPY-----------LLPHIIPMLHQT-F-PKLEMYLHEAQTHQLLAQLDSGKLDCAILALV--KE--- 151 (305)
T ss_pred CCEEEEEEHHHHHHH-----------CCCHHHHHHHHC-C-CCCEEEEEECCCHHHHHHHHCCCCCEEEEECC--CC---
T ss_conf 641431102223332-----------382779998623-8-98379999887577787865788537998458--89---
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCC-----CCCHHHHCCCCEEE-EECCCHHHHHHHHHHHCCCCCCE-EEECCHHHHHHH
Q ss_conf 027843532234402346302113-----47536417862034-31342699999999862998507-874798999999
Q gi|254780170|r 113 SLGLAFRPITYFDGQGFIMHKKKG-----ISSVSQLSGASICV-QAGTTTELTLADYFKAHNMKYHP-IVFERVEEIDAA 185 (342)
Q Consensus 113 ~~~v~Fs~~~~~dgq~~lVrk~~~-----i~s~~dL~G~~I~v-~~GTT~e~~l~~~~~~~~~~~~~-v~~~~~~~a~~a 185 (342)
...+... +.+-+...++++++.. .-+++||.+..... ..|+..-..+.+++...+....+ ...++.+.....
T Consensus 152 ~~~~~~~-~l~~e~l~lv~~~~hpla~~~~i~l~~L~~~~~i~~~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~i~~l 230 (305)
T PRK11151 152 SEAFIEV-PLFDEPMLLAVYEDHPWANRDRVPMSDLAGEKLLMLEDGHCLRDQAMGFCFEAGADEDTHFRATSLETLRNM 230 (305)
T ss_pred CCCCEEE-EECCCCEEEEEECCCCCCCCCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECHHHHHHH
T ss_conf 9872687-620462799995898433699989999769988996899859999999999779998738999447999999
Q ss_pred HHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCCH
Q ss_conf 873960299825047999998367800100256--44423710100027775
Q gi|254780170|r 186 YRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGDT 235 (342)
Q Consensus 186 l~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD~ 235 (342)
+..|--=++.... +.... .. .+..+.+| ++.-.-+++.+.|+|-+
T Consensus 231 V~~G~Gv~ilp~~---~v~~~-~~-~~~l~~~pl~~~~~~r~i~lv~r~~~~ 277 (305)
T PRK11151 231 VAAGSGITLLPAL---AVPNE-RK-RDGVCYLPCIKPEPRRTIGLVYRPGSP 277 (305)
T ss_pred HHHCCCEEECCHH---HHHHH-CC-CCCEEEEECCCCCCEEEEEEEEECCCC
T ss_conf 9929968983599---98622-12-698899988899973699999989098
No 82
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region. Members of this family are ABC transporter periplasmic binding proteins associated with the urea carboxylase/allophanate hydrolase pathway, an alternative to urease for urea degradation. The protein is restricted to bacteria with the pathway, with its gene close to the urea carboxylase and allophanate hydrolase genes. The substrate for this transporter therefore is likely to be urea or a compound from which urea is easily derived.
Probab=90.85 E-value=0.39 Score=27.51 Aligned_cols=60 Identities=13% Similarity=0.124 Sum_probs=43.7
Q ss_pred CEEECCCCCEEEEHH------HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCC
Q ss_conf 306889898801509------9999999996798220259981431002677439627998124325320
Q gi|254780170|r 47 FAEVKANGDWKGFDV------DFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLR 110 (342)
Q Consensus 47 fs~~d~~G~~~GfDV------Dl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~R 110 (342)
-+..|-+|+-+|++. =|.|++.++ +.....|+.|.++..+.-.++.+|+||.. .||.|-.
T Consensus 99 ~slaDLKGKkVav~~~svshyLL~rALe~a-GLs~~DV~vVn~~~~d~~aAf~sg~VdA~---vTWeP~l 164 (328)
T TIGR03427 99 KSLADLKGQKVNLVELSVSHYLLARALESV-GLSEKDVKVVNTSDADIVAAFITKDVTAV---VTWNPQL 164 (328)
T ss_pred CCHHHHCCCEEECCCCCCHHHHHHHHHHHC-CCCHHHEEEEECCCHHHHHHHHCCCCCEE---EEECHHH
T ss_conf 887884898883247870799999999986-99889907884795469999747998789---9978568
No 83
>PRK11233 nitrogen assimilation transcriptional regulator; Provisional
Probab=90.84 E-value=1.4 Score=24.01 Aligned_cols=181 Identities=10% Similarity=0.048 Sum_probs=106.1
Q ss_pred HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH
Q ss_conf 57949998717898830688989880150999999999967982202599814310026774396279981243253201
Q gi|254780170|r 32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE 111 (342)
Q Consensus 32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd 111 (342)
.+|.+++|+.++..... +-..+.+++.+.- ...+|++...+.......|.+|++|+.+..... .
T Consensus 89 ~~G~l~ig~~p~~~~~~----------l~~p~l~~f~~~~--P~v~v~l~~~~~~~l~~~l~~g~~Dlai~~~~~---~- 152 (305)
T PRK11233 89 LSGQVSIGLAPGTAASS----------ITMPLLQAVRAEF--PEIVIYLHENSGAVLNEKLINGQLDMAVIYEHS---P- 152 (305)
T ss_pred CCCEEEEEEECCHHHHH----------HHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHHCCCEEEEEEECCC---C-
T ss_conf 74049999962155665----------3699999999978--942999723887999999876984799982798---9-
Q ss_pred HCCCCCCCCCCCCCCEEEEEECCCC--CCCHHHHCCCCE-EEEECCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHHHHH
Q ss_conf 1027843532234402346302113--475364178620-34313426999999998629985078-7479899999987
Q gi|254780170|r 112 ISLGLAFRPITYFDGQGFIMHKKKG--ISSVSQLSGASI-CVQAGTTTELTLADYFKAHNMKYHPI-VFERVEEIDAAYR 187 (342)
Q Consensus 112 ~~~~v~Fs~~~~~dgq~~lVrk~~~--i~s~~dL~G~~I-~v~~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~~al~ 187 (342)
..++.+. +.+-+...++++++.. --++.||....+ ....++..-..+.+.|...+...+++ .+++......+..
T Consensus 153 -~~~l~~~-~l~~~~l~lv~~~~~p~~~i~l~~l~~~~~i~~~~~~~~r~~~~~~~~~~~~~~~~~~e~~~~~~i~~~V~ 230 (305)
T PRK11233 153 -VAGVSSQ-ALLKEDLFLVGTQDCPGQSVDLNAIAQMNLFLPRDYSAVRLRVDEAFSLRRLTAKVIGEIESIATLTAAIA 230 (305)
T ss_pred -CCCCEEE-EEEECCEEEEECCCCCCCCCCHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHH
T ss_conf -8882899-99853589998477887878999980899898799984999999999977999847999996999999999
Q ss_pred CCCEEEEEECCHHHHHHHHHCCCCHHHCC--CCCCCCCCCEEEECCCCCH
Q ss_conf 39602998250479999983678001002--5644423710100027775
Q gi|254780170|r 188 AHRCDAYTGDISALYALKLTNDRPSEHVI--LPDIISKSPLAPAIIQGDT 235 (342)
Q Consensus 188 ~Gr~DA~~~D~s~La~~~~~~~~p~~~~i--l~e~iskEPlg~avr~gD~ 235 (342)
+|---++.... +.... ..+.+..+ +.++--.-|++.+.+++-+
T Consensus 231 ~G~GiailP~~---~~~~~--~~~~~~~~~~~~~p~~~~~~~l~~~~~r~ 275 (305)
T PRK11233 231 SGMGVTVLPES---AARSL--CGAVNGWMSRITTPSMSLSLSLNLSARAN 275 (305)
T ss_pred HCCEEEEEHHH---HHHHH--HHCCCEEEEECCCCCCEEEEEEEEECCCC
T ss_conf 79978987199---99987--53497699925999866599999989098
No 84
>COG0181 HemC Porphobilinogen deaminase [Coenzyme metabolism]
Probab=90.05 E-value=1.6 Score=23.58 Aligned_cols=146 Identities=17% Similarity=0.119 Sum_probs=77.8
Q ss_pred CCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCC-CCCCCCCEEEEEECCCCCCCHHHH-CCCCEEEEECCCHHHHHHHH
Q ss_conf 1002677439627998124325320110278435-322344023463021134753641-78620343134269999999
Q gi|254780170|r 86 KERFLALQSKQIDILSRNTDWTLLREISLGLAFR-PITYFDGQGFIMHKKKGISSVSQL-SGASICVQAGTTTELTLADY 163 (342)
Q Consensus 86 ~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs-~~~~~dgq~~lVrk~~~i~s~~dL-~G~~I~v~~GTT~e~~l~~~ 163 (342)
++.-.+|.+|++|+.+.++--=++- -..++.-+ -+---|..-.+|-+ ...++++| .|.+| ||++-.- +.+
T Consensus 62 kEle~all~g~~DiAVHSlKDvP~~-~p~gL~laai~~R~dprDalVs~--~~~~l~~LP~Ga~V----GTSSlRR-~aq 133 (307)
T COG0181 62 KELEQALLEGEIDIAVHSLKDVPTE-LPEGLVLAAIPEREDPRDALVSR--DGYDLEELPEGAVV----GTSSLRR-QAQ 133 (307)
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCC-CCCCCEEEEECCCCCHHHEEEEC--CCCCHHHCCCCCCC----CCCHHHH-HHH
T ss_conf 9999999769977897604448756-89993699961789953668887--88856348998831----4526879-999
Q ss_pred HHHCCCCCCEEEECCH-HHHHHHHHCCCEEEEEECCHHHHH-HHHHCCCCHHHCCCCCCCCC----CCEEEECCCCCHHH
Q ss_conf 9862998507874798-999999873960299825047999-99836780010025644423----71010002777579
Q gi|254780170|r 164 FKAHNMKYHPIVFERV-EEIDAAYRAHRCDAYTGDISALYA-LKLTNDRPSEHVILPDIISK----SPLAPAIIQGDTEW 237 (342)
Q Consensus 164 ~~~~~~~~~~v~~~~~-~~a~~al~~Gr~DA~~~D~s~La~-~~~~~~~p~~~~il~e~isk----EPlg~avr~gD~~w 237 (342)
++...++.++..+..+ +.-++.|.+|..||++.-. || .|..+.+--.+.+-|+.+-- --+|+..|++|.+-
T Consensus 134 l~~~rPdl~i~~lRGNVdTRL~KL~~g~yDAIILA~---AGL~RLgl~~~~~~~l~p~~~~PA~gQGal~ie~R~~d~~~ 210 (307)
T COG0181 134 LKALRPDLKIEPLRGNVDTRLRKLDEGEYDAIILAA---AGLKRLGLENRITEILDPEEFLPAPGQGALAIECRAGDEKV 210 (307)
T ss_pred HHHHCCCCEEEECCCCHHHHHHHHHCCCCCHHHHHH---HHHHHCCCCCCCEEECCHHHCCCCCCCCEEEEEEECCCHHH
T ss_conf 998699976996657688899986167852999999---99986287422206347542689888866999996396789
Q ss_pred HHHHH
Q ss_conf 99988
Q gi|254780170|r 238 YNIVS 242 (342)
Q Consensus 238 ~d~V~ 242 (342)
..+..
T Consensus 211 ~~ll~ 215 (307)
T COG0181 211 LELLA 215 (307)
T ss_pred HHHHH
T ss_conf 99998
No 85
>smart00094 TR_FER Transferrin.
Probab=90.02 E-value=0.73 Score=25.78 Aligned_cols=188 Identities=16% Similarity=0.164 Sum_probs=96.5
Q ss_pred HHHHHHHHHHCCCC-CEEEEEE-CCCCCCHHHHHCCCEEEEEE--CCCCCCCCHHCCCCCCCC---------CCCCCCEE
Q ss_conf 99999999967982-2025998-14310026774396279981--243253201102784353---------22344023
Q gi|254780170|r 62 DFCRALSSAIFDDP-SKIQYLP-LNAKERFLALQSKQIDILSR--NTDWTLLREISLGLAFRP---------ITYFDGQG 128 (342)
Q Consensus 62 Dl~raiAaal~gd~-~kVe~v~-~~~~~rf~aL~sG~vDil~~--~~T~T~~Rd~~~~v~Fs~---------~~~~dgq~ 128 (342)
.=|++++.+..... -.++-+. .+..+-+.+++.|+.|++.- +--++..|.-.+.--+.. ..|| ..
T Consensus 12 ~KC~~~~~~~~~~~~p~~~Cv~~~s~~~Ci~~I~~~~AD~~tldgg~vy~A~~~y~L~Pi~~E~y~~~~~~~~~Y~--aV 89 (332)
T smart00094 12 SKCDQWSVNSRGRDVPALECVSASSTEECIKAIQKGEADAVTLDGGDVYTAGKPYNLVPVFAENYGSEEEPETGYY--AV 89 (332)
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCCEEEECHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEE--EE
T ss_conf 9999999996027999648640899999999986699888986838988521238862788610147789874479--99
Q ss_pred EEEECCCCCCCHHHHCCCCEEEE-ECCC----------------------HHHHHHHHHHHCCCC---------------
Q ss_conf 46302113475364178620343-1342----------------------699999999862998---------------
Q gi|254780170|r 129 FIMHKKKGISSVSQLSGASICVQ-AGTT----------------------TELTLADYFKAHNMK--------------- 170 (342)
Q Consensus 129 ~lVrk~~~i~s~~dL~G~~I~v~-~GTT----------------------~e~~l~~~~~~~~~~--------------- 170 (342)
-+|||++++.++.+|.||+-|-. -|.| .++.+.+||.+.=.+
T Consensus 90 AVVkk~s~~~~~~~LrGkkSCHtG~g~tAGW~iPig~L~~~~~i~~~~c~~~~avs~FFs~SCvPGa~~~~~~~~LC~lC 169 (332)
T smart00094 90 AVVKKGSAIFTWNQLRGKKSCHTGVGRTAGWNIPMGLLYNKLVIRPPNCPFEKAVSKFFSASCAPGADKPDPNSNLCALC 169 (332)
T ss_pred EEEECCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHC
T ss_conf 99977887678778378863035788854302027989754776788982788999871455567888887654578755
Q ss_pred --------CCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHH--------HHCCCCHHHCCCCCCCCCCCE--------
Q ss_conf --------50787479899999987396029982504799999--------836780010025644423710--------
Q gi|254780170|r 171 --------YHPIVFERVEEIDAAYRAHRCDAYTGDISALYALK--------LTNDRPSEHVILPDIISKSPL-------- 226 (342)
Q Consensus 171 --------~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~--------~~~~~p~~~~il~e~iskEPl-------- 226 (342)
-..-.|-.+.-|++=|..|.=|.-+...+.+.-.- +..-++++|.+|=.--++.|+
T Consensus 170 ~G~~kC~~~~~e~Y~Gy~GAfRCL~eg~GDVAFvkhttV~e~~~g~~~~~wa~~~~~~dyeLLC~dGtr~pv~~~~~C~L 249 (332)
T smart00094 170 AGDNKCACSSHEPYYGYSGAFRCLAEGAGDVAFVKHSTVFENTDGKNGADWAKNLKRDDYELLCLDGTRKPVTEYKNCHL 249 (332)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCHHHCCCCCCCCHHHHCCCHHHEEEECCCCCCCCHHHHCCCCC
T ss_conf 89987689988767574337776523998679981645542058866510221147111377899989788445032751
Q ss_pred ------EEECCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf ------100027775799998877443311212330
Q gi|254780170|r 227 ------APAIIQGDTEWYNIVSWTHYAMVTAEELGI 256 (342)
Q Consensus 227 ------g~avr~gD~~w~d~V~W~~~ali~Aee~gi 256 (342)
++++|.+. ...+.|.+... ++.+|-
T Consensus 250 a~vP~haVvtr~~~---~~~~~~~ll~~--~~~fg~ 280 (332)
T smart00094 250 ARVPSHAVVARKDK---KEDVIWELLNQ--QQKFGK 280 (332)
T ss_pred CCCCCCCEEECCCC---HHHHHHHHHHH--HHHHCC
T ss_conf 03788607966772---38999999999--999658
No 86
>PRK09861 cytoplasmic membrane lipoprotein-28; Provisional
Probab=90.01 E-value=0.42 Score=27.31 Aligned_cols=94 Identities=15% Similarity=0.008 Sum_probs=58.0
Q ss_pred CCCCEEEEECCCHHH--HHHHHHH-HCCCCCCEEEECCHHHHHHHHHCCCEEE-EEECCHHHHHHHHHCCCCHHHCCCCC
Q ss_conf 786203431342699--9999998-6299850787479899999987396029-98250479999983678001002564
Q gi|254780170|r 144 SGASICVQAGTTTEL--TLADYFK-AHNMKYHPIVFERVEEIDAAYRAHRCDA-YTGDISALYALKLTNDRPSEHVILPD 219 (342)
Q Consensus 144 ~G~~I~v~~GTT~e~--~l~~~~~-~~~~~~~~v~~~~~~~a~~al~~Gr~DA-~~~D~s~La~~~~~~~~p~~~~il~e 219 (342)
+-.+||+..|...+. .+....+ ..|++.+++.|.++.+.-.||.+|++|| +..-.+-|..... .+..+.+.+.
T Consensus 32 k~ikVG~~~~p~~~i~e~~~~~~~ek~G~~leiv~FsDy~~PN~AL~~G~iDaN~fQH~pyL~~~n~--~~g~~L~~v~- 108 (272)
T PRK09861 32 KHIKVGVINGAEQDVAEVAKKVAKEKYGLDVELVGFSGSLLPNDATNHGELDANVFQHRPFLEQDNQ--AHGYKLVAVG- 108 (272)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHH--HCCCCEEEEE-
T ss_conf 7389996789869999999988876179768999946862262897679836024557999999999--8699579973-
Q ss_pred CCCCCCEEE-----------------ECCCCCHHHHHH
Q ss_conf 442371010-----------------002777579999
Q gi|254780170|r 220 IISKSPLAP-----------------AIIQGDTEWYNI 240 (342)
Q Consensus 220 ~iskEPlg~-----------------avr~gD~~w~d~ 240 (342)
.+.-||+|+ +++.+-+.....
T Consensus 109 ~~~~~P~glYS~K~ksl~dlp~Ga~IaIPnDpsN~~RA 146 (272)
T PRK09861 109 NTFVFPMAGYSKKIKTVAQIKEGATVAIPNDPTNLGRA 146 (272)
T ss_pred EEEEEEEEECCCCCCCHHHCCCCCEEEECCCHHHHHHH
T ss_conf 16783014034465987584799989804781269999
No 87
>PRK13583 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=89.91 E-value=1.7 Score=23.51 Aligned_cols=134 Identities=14% Similarity=0.079 Sum_probs=79.1
Q ss_pred EEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHC--CCCCCCCCCCC--CCEEEEEECC-CCCCCHHHHC-------
Q ss_conf 0259981431002677439627998124325320110--27843532234--4023463021-1347536417-------
Q gi|254780170|r 77 KIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREIS--LGLAFRPITYF--DGQGFIMHKK-KGISSVSQLS------- 144 (342)
Q Consensus 77 kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~--~~v~Fs~~~~~--dgq~~lVrk~-~~i~s~~dL~------- 144 (342)
.+++.-+-..+.-..+..|-+|+-+.+.-|-.|.... ..++-....=| -...+.+++. ..+.+.+||+
T Consensus 46 ~i~i~~~r~~DIp~yV~~G~~DlGItG~D~l~E~~~~~~~~v~~~~~LgfG~c~LvvAvP~~w~dv~s~~dl~~~~~~~~ 125 (226)
T PRK13583 46 DVELLFLSASEIPRELGAGRVDLGVTGEDLVREKLADWDKRVEIVARLGFGHADLVVAVPEIWIDVDTMADLDDVAADFR 125 (226)
T ss_pred CEEEEEECHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 85899975556899997698656650225554224461452776321785616699994440135544000556645544
Q ss_pred ---CCCEEEEECCCHHHHHHHHHHHCCCCC-CEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCC
Q ss_conf ---862034313426999999998629985-078747989999998739602998250479999983678001002564
Q gi|254780170|r 145 ---GASICVQAGTTTELTLADYFKAHNMKY-HPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPD 219 (342)
Q Consensus 145 ---G~~I~v~~GTT~e~~l~~~~~~~~~~~-~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e 219 (342)
|+++-| .|.+....++||+++|++. +++.....-|. |-.-|-+|+++.=.+.=..+|. +..+++++
T Consensus 126 ~~~~~~lrI--ATkyp~lt~~~f~~~gi~~~~ii~~~GavE~--aP~~GlaD~IVDiv~TG~TLk~-----NgLk~ie~ 195 (226)
T PRK13583 126 ARHGRRLRI--ATKYWRLTQQFLSQKGVQDYRLVESLGATEG--APAAGSAEIIVDITSTGETLRA-----NHLKILSD 195 (226)
T ss_pred HCCCCCEEE--EECCCHHHHHHHHHCCCCCCEEEECCCCCCC--CCCCCCCCEEEEEECCHHHHHH-----CCCEEECC
T ss_conf 214541476--4047326578898669964059977770213--5667873489998487588998-----79988048
No 88
>PRK09906 DNA-binding transcriptional regulator HcaR; Provisional
Probab=89.28 E-value=1.9 Score=23.21 Aligned_cols=178 Identities=11% Similarity=0.034 Sum_probs=104.4
Q ss_pred HHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCC
Q ss_conf 85794999871789883068898988015099999999996798220259981431002677439627998124325320
Q gi|254780170|r 31 KKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLR 110 (342)
Q Consensus 31 k~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~R 110 (342)
..+|.|++|+...... .+-.+++..+...- ...+|++......+....|.+|++|+.+..... .
T Consensus 87 ~~~~~l~ig~~~~~~~-----------~~lp~~l~~f~~~~--P~v~v~l~~~~~~~~~~~l~~g~~D~~i~~~~~---~ 150 (296)
T PRK09906 87 QEDRQLTIGFVPSAEV-----------NLLPKVLPMFRLRH--PDTLIELVSLINTQQEEKLRRGELDVGFMRHPV---Y 150 (296)
T ss_pred CCCCEEEEEECHHHHH-----------HHHHHHHHHHHHHC--CCCCEEEEECCCHHHHHHHHCCCCCEEEEECCC---C
T ss_conf 6771388321225699-----------99999999987408--986348997580899999986997679873688---9
Q ss_pred HHCCCCCCCCCCCCCCEEEEEECCCC-----CCCHHHHCCCCEEEE---ECCCHHHHHHHHHHHCCCCCCEE-EECCHHH
Q ss_conf 11027843532234402346302113-----475364178620343---13426999999998629985078-7479899
Q gi|254780170|r 111 EISLGLAFRPITYFDGQGFIMHKKKG-----ISSVSQLSGASICVQ---AGTTTELTLADYFKAHNMKYHPI-VFERVEE 181 (342)
Q Consensus 111 d~~~~v~Fs~~~~~dgq~~lVrk~~~-----i~s~~dL~G~~I~v~---~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~ 181 (342)
..++.+. +.+-+.-.++++++.. --+++||.+...-+. .+.+....+..++...+...+++ ..++...
T Consensus 151 --~~~l~~~-~l~~~~~~~~~~~~hpla~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~ 227 (296)
T PRK09906 151 --SDEIDYL-ELLDEPLVVVLPVDHPLAHEKEITAAQLDGVNFISPDPAQSGSLAPIIKAWFAQHNSQPNIVQVATNILV 227 (296)
T ss_pred --CCCEEEE-EEECCEEEEEEECCCCCCCCCCCCHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHH
T ss_conf --9881899-8504607999828981005999899997599879636654760999999999977999746999898999
Q ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCC
Q ss_conf 9999873960299825047999998367800100256--4442371010002777
Q gi|254780170|r 182 IDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGD 234 (342)
Q Consensus 182 a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD 234 (342)
.......|-.=++.-+. .. .+ .+++.+++| ...-.=++.++.|++.
T Consensus 228 ~~~~v~~G~Gi~~lP~~---~~---~~-~~~~l~~~pl~~~~~~~~~~l~~r~~~ 275 (296)
T PRK09906 228 TMNLVGMGLGCTIIPGY---MN---NF-NTGQVVFRPLAGNVPSIALLMAWKKGE 275 (296)
T ss_pred HHHHHHHCCEEEECHHH---HH---HH-CCCCEEEEECCCCCCEEEEEEEECCCC
T ss_conf 99999949899984587---73---10-689999998899987028999987999
No 89
>PRK11716 DNA-binding transcriptional regulator IlvY; Provisional
Probab=88.69 E-value=2 Score=22.95 Aligned_cols=179 Identities=12% Similarity=-0.010 Sum_probs=97.6
Q ss_pred CCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHH
Q ss_conf 79499987178988306889898801509999999999679822025998143100267743962799812432532011
Q gi|254780170|r 33 RGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREI 112 (342)
Q Consensus 33 rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~ 112 (342)
+|.|++|...... +++ =.++.+.+.+.- ...++++...+..+.+..|.+|++|+.+.......
T Consensus 66 ~G~lri~~~~t~~-~~~----------lp~~l~~f~~~~--P~v~~~l~~~~~~~~~~~l~~g~~D~ai~~~p~~~---- 128 (269)
T PRK11716 66 SGELSLFCSVTAA-YSH----------LPPILDRFRAEH--PLVEIKLTTGDAADAVEKVQSGEADLAIAAKPETL---- 128 (269)
T ss_pred CCCEEEEECHHHH-HHH----------CCHHHHHHHHHC--CCCEEEEECCCHHHHHHHHHCCCCCEEEEECCCCC----
T ss_conf 6626998514887-775----------467899999988--89448984289999999998699558999378789----
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCC------CCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHHH
Q ss_conf 027843532234402346302113------47536417862034313426999999998629985078-74798999999
Q gi|254780170|r 113 SLGLAFRPITYFDGQGFIMHKKKG------ISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPI-VFERVEEIDAA 185 (342)
Q Consensus 113 ~~~v~Fs~~~~~dgq~~lVrk~~~------i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~~a 185 (342)
..++.|. +.+-+...++++++.. ..+..||.....-....+.....+.+||++.++.-+++ .+.+.+...+.
T Consensus 129 ~~~l~~~-~l~~~~l~~v~p~~~~~~~~~~~~~~~dl~~~p~il~~~~~~r~~~~~~~~~~~~~p~i~~e~~~~~~i~~~ 207 (269)
T PRK11716 129 PSSLAFS-PIDEIPLVLIAPALPCPVRQQVSQEKPDWSRIPFILPEHGPARRRIDLWFRRHKIKPNIYAQVSGHEAIVSM 207 (269)
T ss_pred CCCEEEE-EEEEEEEEEEEECCCCHHHCCCCCCHHHHHCCCEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHH
T ss_conf 9976999-965641899997884154363568844683386781589827999999999769997179998979999999
Q ss_pred HHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCC
Q ss_conf 873960299825047999998367800100256--4442371010002777
Q gi|254780170|r 186 YRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGD 234 (342)
Q Consensus 186 l~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD 234 (342)
+.+|--=++..+ ++... ....+...+++ +....-.++.++|++-
T Consensus 208 V~~G~GiailP~---~~~~~--~~~~~~l~~l~~~~~~~~~~i~l~~~~~r 253 (269)
T PRK11716 208 VALGCGVGILPE---VVLDN--SPVRDRVQRLEVPPELTPFELGVCCQKKR 253 (269)
T ss_pred HHHCCEEEEHHH---HHHHC--CCCCCCEEEEECCCCCCCEEEEEEEECCC
T ss_conf 997994172059---99832--75579889974899887369999997998
No 90
>PRK10523 lipoprotein involved with copper homeostasis and adhesion; Provisional
Probab=87.57 E-value=0.94 Score=25.08 Aligned_cols=57 Identities=19% Similarity=0.380 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCC----------HHHHHHHH--CCEEEEEEECCCCCCEEECCCCCEE
Q ss_conf 913899999999999984012442----------16899985--7949998717898830688989880
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNA----------SILGDIKK--RGFLKCGINTGLVGFAEVKANGDWK 57 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a----------~tLd~Vk~--rG~L~vGv~~~~ppfs~~d~~G~~~ 57 (342)
|||+++.+++++.++.+..|.... ..|.-+.+ +|+|-|+--.+.---=+.+++|.|+
T Consensus 2 mkk~~~~~~~a~g~~~l~GC~~r~~~~~~~~~~~~~lkpm~qsf~GvLPCADCsGI~ttL~L~~DGtfv 70 (234)
T PRK10523 2 MKKAILTALAAVGLFALMGCNNRAEVDTLSPAQAAELKPMQQSWRGVLPCADCEGIDTSLFLEKDGTWV 70 (234)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCHHHHHCCEEECCCCCCCEEEEEECCCCCEE
T ss_conf 058999999999999876346654346667532202670335534602034667843589986898789
No 91
>PRK10852 thiosulfate transporter subunit; Provisional
Probab=87.53 E-value=2.4 Score=22.50 Aligned_cols=181 Identities=15% Similarity=0.201 Sum_probs=84.0
Q ss_pred CCCCCCCCEEEEEECCC--CCCCHHHHCCCCEEEE---E---CCCHHHHHHHHH---HHCCCC-C-----------CEEE
Q ss_conf 53223440234630211--3475364178620343---1---342699999999---862998-5-----------0787
Q gi|254780170|r 119 RPITYFDGQGFIMHKKK--GISSVSQLSGASICVQ---A---GTTTELTLADYF---KAHNMK-Y-----------HPIV 175 (342)
Q Consensus 119 s~~~~~dgq~~lVrk~~--~i~s~~dL~G~~I~v~---~---GTT~e~~l~~~~---~~~~~~-~-----------~~v~ 175 (342)
+.| |++--.|+|||+. +|+++.||--.-|-|+ . |..--..|+.|- +..|-+ . ++..
T Consensus 115 s~p-ytStivFlVRkGNPK~IkdW~DL~k~gV~VItPNPKTSGgaRwnyLAAwg~a~~~~gg~e~~a~~fv~~l~~NVpV 193 (338)
T PRK10852 115 SSP-FYSTMGFLVRKGNPKNIHDWNDLVRSDVKLIFPNPKTSGNARYTYLAAWGAADKADGGDKAKTEQFMTQFLKNVEV 193 (338)
T ss_pred CCC-EEEEEEEEEECCCCCCCCCHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
T ss_conf 964-4667999980799566877577464897897579988840769999999999986499989999999999836851
Q ss_pred ECCH-HHHHHHH-HCCCEEEEEECCHHHHHHHHHCCCCHHHC-CCCC-CCCCCCEEEEC-----CCCCHHHHHHHHHHHH
Q ss_conf 4798-9999998-73960299825047999998367800100-2564-44237101000-----2777579999887744
Q gi|254780170|r 176 FERV-EEIDAAY-RAHRCDAYTGDISALYALKLTNDRPSEHV-ILPD-IISKSPLAPAI-----IQGDTEWYNIVSWTHY 246 (342)
Q Consensus 176 ~~~~-~~a~~al-~~Gr~DA~~~D~s~La~~~~~~~~p~~~~-il~e-~iskEPlg~av-----r~gD~~w~d~V~W~~~ 246 (342)
+++. -++...| +.|.-|++.+=-......+... .+++|. |.|. .|.-||--.+| ++|-.+ +..--+.
T Consensus 194 ld~gaR~AT~tF~~rg~GDVLl~~ENEa~l~~~~~-g~~~~eiV~Ps~sIlae~pVAvVDk~vdk~GTr~---vA~AyL~ 269 (338)
T PRK10852 194 FDTGGRGATTTFAERGLGDVLISFESEVNNIRKQY-EAQGFEVVIPKTNILAEFPVAWVDKNVQANGTEK---AAKAYLN 269 (338)
T ss_pred CCCCCHHHHHHHHHCCCCCEEEEHHHHHHHHHHHH-CCCCCEEECCCCCEEECCCEEEEEECCCCCCCHH---HHHHHHH
T ss_conf 58971678899987386756752167899999960-8997149889975660697489860123458899---9999999
Q ss_pred HHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHCCCHHHHHHHHCCCCC
Q ss_conf 331121233015208988622671778876235887650333799867999999971869998788648889
Q gi|254780170|r 247 AMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYRIIRHMGNYGEMFDRNLGNQS 318 (342)
Q Consensus 247 ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~~i~~vGNYgei~~rnlg~~s 318 (342)
=|..-|..-| +.+.---..||+|..=.. +. +- .+. ...|...-|...++-.+||.++-
T Consensus 270 yLyS~eaQ~i----~Ak~~yRP~~~~v~~~~~-~~---FP-~~~-----lfti~d~fGgW~~aq~~~F~dGg 327 (338)
T PRK10852 270 WLYSPQAQTI----ITDYYYRVNNPEVMDKLK-DK---FP-QTE-----LFRVEDKFGSWPEVMKTHFTSGG 327 (338)
T ss_pred HHCCHHHHHH----HHHHCCCCCCHHHHHHHH-CC---CC-CCC-----EEEEECCCCCHHHHHHHHCCCCC
T ss_conf 8659899999----998089989978987764-54---99-851-----47653444898999998704885
No 92
>TIGR00070 hisG ATP phosphoribosyltransferase; InterPro: IPR001348 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions . ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the two forms of ATP phosphoribosyltransferase: a long form containing two catalytic domains and a C-terminal regulatory domain, and a short form in which the regulatory domain is missing. The long form is catalytically competent, but in organisms with the short form, a histidyl-tRNA synthetase paralogue, HisZ, is required for enzyme activity . The structures of the long form enzymes from Escherichia coli (P60757 from SWISSPROT) and Mycobacterium tuberculosis (P60759 from SWISSPROT) have been determined , . The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. The two catalytic domains are linked by a two-stranded beta-sheet and togther form a "periplamsic binding protein fold". A crevice between these domains contains the active site. The C-terminal domain is not directly involved in catalysis but appears to be involved the formation of hexamers, induced by the binding of inhibitors such as histidine to the enzyme, thus regulating activity.; GO: 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process.
Probab=87.22 E-value=1.8 Score=23.30 Aligned_cols=187 Identities=13% Similarity=0.061 Sum_probs=119.0
Q ss_pred CEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCC----CHHC---CCCCCCCCCCCC--CEEEEEECCC--CCCCHHHHC
Q ss_conf 2025998143100267743962799812432532----0110---278435322344--0234630211--347536417
Q gi|254780170|r 76 SKIQYLPLNAKERFLALQSKQIDILSRNTDWTLL----REIS---LGLAFRPITYFD--GQGFIMHKKK--GISSVSQLS 144 (342)
Q Consensus 76 ~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~----Rd~~---~~v~Fs~~~~~d--gq~~lVrk~~--~i~s~~dL~ 144 (342)
..+++.-+-..+.=..+..|++|+-+-+.-+=.+ |... ..|++..=.-|- -..+.++.++ .+.+.+||.
T Consensus 44 ~~i~~~~~Ra~DiP~~V~~G~aDlGI~G~D~l~EE~L~~~~~~~~~~V~~l~dL~fG~c~L~vA~p~~~yP~~~~~~dl~ 123 (317)
T TIGR00070 44 LPIKVLFVRAADIPTYVEDGVADLGITGEDVLREELLNRNVDSELKNVEILEDLNFGGCKLVVAVPEDSYPDYRGPEDLK 123 (317)
T ss_pred CCEEEEEECCCCCCHHHHCCCEEEEEECCEEEEECHHCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCH
T ss_conf 76279983687774132266253348610244310111311146523255532689971368874701378768730001
Q ss_pred ----CC--CEEEEECCCHHHHHHHHHHHCC------CCCCEEEECCHHHHHHHHHCCC--EEEEEECCHHHHHHHHHCCC
Q ss_conf ----86--2034313426999999998629------9850787479899999987396--02998250479999983678
Q gi|254780170|r 145 ----GA--SICVQAGTTTELTLADYFKAHN------MKYHPIVFERVEEIDAAYRAHR--CDAYTGDISALYALKLTNDR 210 (342)
Q Consensus 145 ----G~--~I~v~~GTT~e~~l~~~~~~~~------~~~~~v~~~~~~~a~~al~~Gr--~DA~~~D~s~La~~~~~~~~ 210 (342)
|+ +|+ |.+-.....||++++ ++++++.....-|+ |...|= +|+++-=.|.=..+|.
T Consensus 124 ~kvGg~ev~IA----T~FP~~a~~Yf~~~gGttvek~~~~i~~L~GSvE~--Ap~~G~PeAD~I~DLvstG~TL~~---- 193 (317)
T TIGR00070 124 EKVGGKEVRIA----TEFPHLAKKYFRELGGTTVEKLSVEIIELNGSVEL--APLIGIPEADAIVDLVSTGTTLRE---- 193 (317)
T ss_pred HCCCCCEEEEE----ECCHHHHHHHHHHCCCCEEEEEEEEEEECCCCEEE--ECCCCCCCCCEEEEEECCHHHHHH----
T ss_conf 21589648998----26757999999861894466555799822263860--012789730002542111278975----
Q ss_pred CHHHCCCCCCCC-C------CCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHH
Q ss_conf 001002564442-3------710100027775799998877443311212330152089886226717788762
Q gi|254780170|r 211 PSEHVILPDIIS-K------SPLAPAIIQGDTEWYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFL 277 (342)
Q Consensus 211 p~~~~il~e~is-k------EPlg~avr~gD~~w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~l 277 (342)
+-.+.....++ . .|.+.. .++|.+.-+-..--+..-|+||+.-.-=-|+.. +-.=++|+.+|
T Consensus 194 -NgL~~id~i~~ks~a~LI~N~~S~~-~~~~~~~i~~l~~~i~~V~~a~~~~~~m~naP~---ed~L~~i~~ll 262 (317)
T TIGR00070 194 -NGLREIDVILDKSSARLIANRESYK-DKSKKQLIDELVTRIKGVIEAETKKSIMLNAPK---EDKLEEIIALL 262 (317)
T ss_pred -CCCEEEEEEECCEEEEEEECCCCCC-CCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCC---CCCHHHHHHHC
T ss_conf -3968898884240378843675568-641079999999877776400405699986787---55648899735
No 93
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=87.09 E-value=2.5 Score=22.34 Aligned_cols=130 Identities=16% Similarity=0.179 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCC-HHCCCCCCC----CCCCCCCEEEEEECCC
Q ss_conf 99999999996798220259981431002677439627998124325320-110278435----3223440234630211
Q gi|254780170|r 61 VDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLR-EISLGLAFR----PITYFDGQGFIMHKKK 135 (342)
Q Consensus 61 VDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~R-d~~~~v~Fs----~~~~~dgq~~lVrk~~ 135 (342)
.|++.-.....+ .||+..- -+..-...=..+..|+++++.+....- .....=+|| .|.|+-...++|+++.
T Consensus 36 ~~vA~~~~ektg---~kVnvt~-GPq~tW~~kAkknADilfgaseqsalaia~~~~~~fs~~~i~ply~R~aiIlvkkgN 111 (252)
T COG4588 36 KDVAKKYEEKTG---IKVNVTA-GPQATWNEKAKKNADILFGASEQSALAIAEDHKDSFSEKNIQPLYLRPAIILVKKGN 111 (252)
T ss_pred HHHHHHHHHHHC---EEEEEEC-CCCCHHHHHHHCCCCEEECCCHHHHHHHHHHCCCCCCCCCCCEEEEECEEEEECCCC
T ss_conf 999999878748---0799941-886104456413674564164888999998563335520253135402179962799
Q ss_pred --CCCCHHHHC--CCCEEEEECCC---------HH------HHHHHHHHHCCCCCCEEEE-CCHHHHHHHHHC-CCEEEE
Q ss_conf --347536417--86203431342---------69------9999999862998507874-798999999873-960299
Q gi|254780170|r 136 --GISSVSQLS--GASICVQAGTT---------TE------LTLADYFKAHNMKYHPIVF-ERVEEIDAAYRA-HRCDAY 194 (342)
Q Consensus 136 --~i~s~~dL~--G~~I~v~~GTT---------~e------~~l~~~~~~~~~~~~~v~~-~~~~~a~~al~~-Gr~DA~ 194 (342)
+|++++||- |..|.|..|.- .| .++++... ..-+++.| ++...++.++.+ -.+||.
T Consensus 112 PknIk~~eDll~~gi~ivV~dGaG~sntsgtgvwED~agr~~~ie~v~a---fR~NI~~fapnSgaArkaf~~~~~aDaw 188 (252)
T COG4588 112 PKNIKGFEDLLKPGIGIVVNDGAGVSNTSGTGVWEDIAGRKGNIETVAA---FRKNIVAFAPNSGAARKAFENQPDADAW 188 (252)
T ss_pred CCCCCCHHHHHCCCCEEEEECCCCCCCCCCCEEHHHHHCCCCCHHHHHH---HHHCEEEECCCCCHHHHHHHCCCCCCEE
T ss_conf 5444568887057862998379764477772204865410114889999---8852389746870489998549998558
Q ss_pred EEC
Q ss_conf 825
Q gi|254780170|r 195 TGD 197 (342)
Q Consensus 195 ~~D 197 (342)
++=
T Consensus 189 ItW 191 (252)
T COG4588 189 ITW 191 (252)
T ss_pred EEE
T ss_conf 870
No 94
>PRK09508 leuO leucine transcriptional activator; Reviewed
Probab=86.92 E-value=2.6 Score=22.28 Aligned_cols=141 Identities=8% Similarity=-0.058 Sum_probs=82.5
Q ss_pred CEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCC----CCCHHHHCCCCEEEE
Q ss_conf 2025998143100267743962799812432532011027843532234402346302113----475364178620343
Q gi|254780170|r 76 SKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKG----ISSVSQLSGASICVQ 151 (342)
Q Consensus 76 ~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~----i~s~~dL~G~~I~v~ 151 (342)
..+++.+....+....|.+|++|++++...... .++.+ .+.|.|...++++++-. --+.+++......+.
T Consensus 141 v~l~~~~~~~~~~~~~L~~g~iDl~I~~~~~~~-----~~~~~-~~L~~d~~v~v~~~~HP~~~~~lt~~~~~~~~hv~~ 214 (314)
T PRK09508 141 IHLVFKSSLNQNIEHQLRYQETEFVISYEEFDR-----PEFTS-VPLFKDELVLVASKNHPRIKGPILEEQLYNEQHAVV 214 (314)
T ss_pred CEEEEEECCCHHHHHHHHCCCCCEEEECCCCCC-----CCCEE-EEEEECCEEEEECCCCCCCCCCCCHHHHHHCCCEEE
T ss_conf 779998577064999997699529996787799-----87348-999724649998299976789999999961998899
Q ss_pred --ECCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEE
Q ss_conf --13426999999998629985078-747989999998739602998250479999983678001002564442371010
Q gi|254780170|r 152 --AGTTTELTLADYFKAHNMKYHPI-VFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAP 228 (342)
Q Consensus 152 --~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~ 228 (342)
.|.. .....++...+..-.+. ...+...+..-+..+ |.++.=-..++-. +.+-....++|-++..+++..
T Consensus 215 s~~~~~--~~~~~~l~~~~~~r~i~~~~~s~~~~~~lv~~t--d~ia~lP~~~a~~---~~~~~~l~~~~lP~~~~~~~~ 287 (314)
T PRK09508 215 SLDRFA--SFSQPWYDTVDKQASIAYQGMALSSVLNVVSQT--HLVAIAPRWLAEE---FAESLELQILPLPLKNNSRTC 287 (314)
T ss_pred ECCCCC--CHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHC--CEEEHHHHHHHHH---HHHCCCCEEECCCCCCCCEEE
T ss_conf 639988--589999995798631899958899999999839--9775899999998---644299579789989887369
Q ss_pred E
Q ss_conf 0
Q gi|254780170|r 229 A 229 (342)
Q Consensus 229 a 229 (342)
.
T Consensus 288 ~ 288 (314)
T PRK09508 288 Y 288 (314)
T ss_pred E
T ss_conf 9
No 95
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=84.88 E-value=1.5 Score=23.80 Aligned_cols=115 Identities=13% Similarity=0.217 Sum_probs=56.8
Q ss_pred CCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 98801509999999999679822025998143100267743962799812432532011027843532234402346302
Q gi|254780170|r 54 GDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHK 133 (342)
Q Consensus 54 G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk 133 (342)
|.++=.++++++.|...+. ...+|+|+..-..--..++. ++++.| .|++. +-|..-|.-..-.++|+.
T Consensus 89 g~Pte~Ei~~Aell~~~~p-~~e~vrfvnSGTEAtmsAiR------lARa~T---gR~kI--ikF~G~YHG~~D~~lv~a 156 (432)
T COG0001 89 GAPTELEVELAELLIERVP-SIEKVRFVNSGTEATMSAIR------LARAYT---GRDKI--IKFEGCYHGHSDSLLVKA 156 (432)
T ss_pred CCCCHHHHHHHHHHHHHCC-CCCEEEEECCHHHHHHHHHH------HHHHHH---CCCEE--EEECCCCCCCCCHHHHHC
T ss_conf 8997789999999998658-65089986064089999999------998764---79759--997288888711878426
Q ss_pred CCCCCCH--HHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCC--CEEEEEEC
Q ss_conf 1134753--6417862034313426999999998629985078747989999998739--60299825
Q gi|254780170|r 134 KKGISSV--SQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAH--RCDAYTGD 197 (342)
Q Consensus 134 ~~~i~s~--~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~G--r~DA~~~D 197 (342)
+|+..++ .+..|..-.+.+- .-+++|.+.+....++... ++-|+...
T Consensus 157 gsg~~t~g~p~s~Gvp~~~a~~-----------------ti~~~yND~~al~~~~~~~g~~IAaVIvE 207 (432)
T COG0001 157 GSGAATLGSPSSPGVPADVAKH-----------------TLVLPYNDLEALEEAFEEYGDDIAAVIVE 207 (432)
T ss_pred CCCCCCCCCCCCCCCCHHHHCC-----------------EEEECCCCHHHHHHHHHHCCCCEEEEEEC
T ss_conf 7675557899999997345344-----------------78845799999999998768967999954
No 96
>PRK11898 prephenate dehydratase; Provisional
Probab=84.82 E-value=2 Score=23.00 Aligned_cols=131 Identities=10% Similarity=0.065 Sum_probs=64.5
Q ss_pred HHHHHHHHHCCCCCEEEEEE-CCCCCCHHHHHCCCEEEEEECCCCCCC------CHHCC---CCCCCC-CCCCCCEEEEE
Q ss_conf 99999999679822025998-143100267743962799812432532------01102---784353-22344023463
Q gi|254780170|r 63 FCRALSSAIFDDPSKIQYLP-LNAKERFLALQSKQIDILSRNTDWTLL------REISL---GLAFRP-ITYFDGQGFIM 131 (342)
Q Consensus 63 l~raiAaal~gd~~kVe~v~-~~~~~rf~aL~sG~vDil~~~~T~T~~------Rd~~~---~v~Fs~-~~~~dgq~~lV 131 (342)
+...-|...++. ..+++++ .++.+.|.++.+|++|..+=..--+.+ -|... .+.-.. .++--.+.+++
T Consensus 13 fS~~Aa~~~f~~-~~~~~~~~~s~~~vf~aV~~g~~d~gvvPiENS~~G~V~~t~D~L~~~~~l~I~gE~~l~I~h~Ll~ 91 (285)
T PRK11898 13 FTEAAALKFFPA-GEAELVPYDSIPDVLDAVEAGEVDYAVVPIENSIEGSVNPTLDYLAHGSPLQIVAEIVLPIAQHLLV 91 (285)
T ss_pred HHHHHHHHHCCC-CCCEEEECCCHHHHHHHHHCCCCCEEEEEEECCCCEECHHHHHHHHCCCCCEEEEEEEEEEEEEEEC
T ss_conf 899999986486-8952786699999999997799877998780458467099899872059958999999877469862
Q ss_pred ECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCC---EEEEEECCHHHHHHH
Q ss_conf 02113475364178620343134269999999986299850787479899999987396---029982504799999
Q gi|254780170|r 132 HKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHR---CDAYTGDISALYALK 205 (342)
Q Consensus 132 rk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr---~DA~~~D~s~La~~~ 205 (342)
+.. +++++ ++|-...- ....-..|++++-+.++++.+.+..++.+.+.... +-|+.+ .+++..
T Consensus 92 ~~~----~l~~I--~~V~SHpq--al~QC~~~L~~~~p~~~~v~~~sTa~Aa~~v~~~~~~~~AAIas---~~aa~~ 157 (285)
T PRK11898 92 RPG----HLADI--RTVYSHPQ--ALAQCRKWLAEHLPGAELEPANSTAAAAQYVAEHPAEPIAAIAS---ERAAEL 157 (285)
T ss_pred CCC----CHHHC--EEEEECHH--HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCEEECCH---HHHHHH
T ss_conf 799----86558--37872347--99999999997388868999075899999998489977144044---766212
No 97
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase; InterPro: IPR004639 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamate-1-semialdehyde (GSA) aminotransferase (5.4.3.8 from EC), which catalyse a transamination reaction to produce 5-aminoaevulinic acid during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme has a high degree of similarity to amino acid transaminases, and is classed as a class III aminotransferase.; GO: 0042286 glutamate-1-semialdehyde 21-aminomutase activity, 0033014 tetrapyrrole biosynthetic process.
Probab=83.56 E-value=2.7 Score=22.14 Aligned_cols=116 Identities=10% Similarity=0.161 Sum_probs=69.5
Q ss_pred CCEEEEHHHHHHHHHHHHCCC-CCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEE
Q ss_conf 988015099999999996798-2202599814310026774396279981243253201102784353223440234630
Q gi|254780170|r 54 GDWKGFDVDFCRALSSAIFDD-PSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMH 132 (342)
Q Consensus 54 G~~~GfDVDl~raiAaal~gd-~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVr 132 (342)
|-++=-+|.|++.|-..+-.- ..||+||..-..--.+|++ |+|+.| .|+.. |-|.+-|-=..=.+||+
T Consensus 84 G~PtE~Ei~lA~~i~~~v~~~t~e~vRfVnSGTEATMsAvR------LARG~T---GR~~I--iKFeGcYHGh~D~lLv~ 152 (434)
T TIGR00713 84 GAPTEAEILLAKEIISRVPSVTEEMVRFVNSGTEATMSAVR------LARGFT---GRDKI--IKFEGCYHGHHDALLVK 152 (434)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHH------HHHHCC---CCCCE--EEECCCCCCCHHHHCCC
T ss_conf 89988999999999864055546516862176488999999------863105---88727--88617641012320035
Q ss_pred CCCCCCCHHH---HC--CCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCC--CEEEEEEC
Q ss_conf 2113475364---17--862034313426999999998629985078747989999998739--60299825
Q gi|254780170|r 133 KKKGISSVSQ---LS--GASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAH--RCDAYTGD 197 (342)
Q Consensus 133 k~~~i~s~~d---L~--G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~G--r~DA~~~D 197 (342)
..|+..+... .+ |..-.+.+-| -.++|.+.+..-++++.. ++-+++.-
T Consensus 153 AGSGaaT~g~CG~P~SpGvP~~~~k~T-----------------l~~PYND~~a~~~~f~~~G~~iAgvIvE 207 (434)
T TIGR00713 153 AGSGAATLGSCGLPTSPGVPEDFAKLT-----------------LVLPYNDLEALEEAFEEYGEEIAGVIVE 207 (434)
T ss_pred CCCHHHCCCCCCCCCCCCCHHHHHHHC-----------------CCCCCCCHHHHHHHHHHCCCCEEEEEEC
T ss_conf 452101046887788888701143113-----------------4045173899999998679834378861
No 98
>PRK11062 nhaR transcriptional activator NhaR; Provisional
Probab=83.42 E-value=3.8 Score=21.25 Aligned_cols=145 Identities=13% Similarity=0.117 Sum_probs=82.0
Q ss_pred CCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEE--ECCCCCCHHHHHCCCEEEEEECCCCCCCC
Q ss_conf 7949998717898830688989880150999999999967982202599--81431002677439627998124325320
Q gi|254780170|r 33 RGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYL--PLNAKERFLALQSKQIDILSRNTDWTLLR 110 (342)
Q Consensus 33 rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v--~~~~~~rf~aL~sG~vDil~~~~T~T~~R 110 (342)
++.+++|+....+.. | +.+-+...+..+ .+|+++ .-+..+.+..|..+++|++..+.......
T Consensus 92 ~~~lrvGi~~tl~k~-----------~---~~~lL~~~~~~~-~~v~l~~~eg~~~~LL~~L~~~~LDlvLsd~p~~~~~ 156 (296)
T PRK11062 92 NLLFDVGVADALSKR-----------L---VSRVLLAAVPED-ESIHLRCFESTHEMLLEQLSQHKLDMILSDCPVDSTQ 156 (296)
T ss_pred CCEEEEEEHHHHHHH-----------H---HHHHHHHHHHCC-CCEEEEEECCCHHHHHHHHHCCCCCEEEECCCCCCCC
T ss_conf 705999852464698-----------9---999999997228-9779999349879999999838987576068887556
Q ss_pred HHCCCCCCCCCCCCCCEEEEEECCCC-CCCHHHHCCCCEEEEE-CCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHHHHH
Q ss_conf 11027843532234402346302113-4753641786203431-3426999999998629985078-7479899999987
Q gi|254780170|r 111 EISLGLAFRPITYFDGQGFIMHKKKG-ISSVSQLSGASICVQA-GTTTELTLADYFKAHNMKYHPI-VFERVEEIDAAYR 187 (342)
Q Consensus 111 d~~~~v~Fs~~~~~dgq~~lVrk~~~-i~s~~dL~G~~I~v~~-GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~~al~ 187 (342)
.. --|+.+....+-.++.+++.. .....+|++...-... +|..-..+..||+++++.-.++ .|++.+-....-.
T Consensus 157 --~~-~~~s~~L~~~~v~~~~~~~l~~~~fP~~L~~~plllp~~~S~lR~~ld~wf~~~gI~P~Iv~E~dD~allk~~a~ 233 (296)
T PRK11062 157 --QE-GLFSKKLGECGVSFFCTNPLPEKPFPACLEERRLLIPGRRTMLGRKLLNWFNSQGLNVEILGEFDDAALMKAFGA 233 (296)
T ss_pred --CC-CEEEEECCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHH
T ss_conf --88-638987466846898457444587957755798402799875899999999968998449998598999999998
Q ss_pred CCCEEEEE
Q ss_conf 39602998
Q gi|254780170|r 188 AHRCDAYT 195 (342)
Q Consensus 188 ~Gr~DA~~ 195 (342)
.|-.=++.
T Consensus 234 ~G~Gva~~ 241 (296)
T PRK11062 234 YHDAIFVA 241 (296)
T ss_pred HCCCEEEC
T ss_conf 19988987
No 99
>PRK13584 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=83.25 E-value=3.6 Score=21.37 Aligned_cols=107 Identities=16% Similarity=0.141 Sum_probs=66.4
Q ss_pred EEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCH
Q ss_conf 02599814310026774396279981243253201102784353223440234630211347536417862034313426
Q gi|254780170|r 77 KIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTT 156 (342)
Q Consensus 77 kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~ 156 (342)
.+++.-+-.++.-..+..|.+|+-+.+.-|=.|.+... ..... .-|..-.+.+-. ..+..++++|+ |.+
T Consensus 44 ~i~~~~vR~~DIp~yV~~G~~DiGIvG~D~l~E~~~~v-~~lld-L~~G~crl~vA~-----~~~~~~~~rIA----TkY 112 (204)
T PRK13584 44 NIECILVKGSDVPIYVEQGMADIGIVGSDILDERQYNV-NNLLN-MPFGACHFAVAA-----KPETTNYRKIA----TSY 112 (204)
T ss_pred CEEEEEECHHHHHHHHHCCCCCEEEECCHHHHCCCCCE-EEEEC-CCCCCEEEEEEE-----CCCCCCCCEEE----EEH
T ss_conf 87999988688899997498657752642022268981-47652-676747899996-----67756787898----725
Q ss_pred HHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEE
Q ss_conf 9999999986299850787479899999987396029982
Q gi|254780170|r 157 ELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTG 196 (342)
Q Consensus 157 e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~ 196 (342)
....++||+++|++++++.....-|. |-..|=+|+++.
T Consensus 113 p~it~~~f~~~gi~~eii~l~GsvEl--AP~~GlAD~IvD 150 (204)
T PRK13584 113 VHTAETYFKSKGIDVELIKLNGSVEL--ACVVDMVDGIVD 150 (204)
T ss_pred HHHHHHHHHHCCCCEEEEEEEEEEEE--CCCCCCCCEEEE
T ss_conf 77999999970995289997536853--678887558999
No 100
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=83.19 E-value=2.9 Score=22.01 Aligned_cols=137 Identities=11% Similarity=0.085 Sum_probs=62.4
Q ss_pred CCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEE---CCCCCCHHHHHCCCEEEEEECCCCCCC------CHHCCCC
Q ss_conf 8306889898801509999999999679822025998---143100267743962799812432532------0110278
Q gi|254780170|r 46 GFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLP---LNAKERFLALQSKQIDILSRNTDWTLL------REISLGL 116 (342)
Q Consensus 46 pfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~---~~~~~rf~aL~sG~vDil~~~~T~T~~------Rd~~~~v 116 (342)
-.+|..+.|.++= .-|+..+..-+ -++++ .++.+.|.++.+|++|..+=..--+.+ =|.-.
T Consensus 105 kVayLGp~GtfS~---~Aa~~~~~~~~-----~~~~~~~~~~i~dVf~aVe~g~adygVvPiENS~eG~V~~tlDlL~-- 174 (386)
T PRK10622 105 RIAFLGPKGSYSH---LAARQYAARHF-----EQFIESGCAKFADIFNQVETGQADYAVVPIENTSSGAINDVYDLLQ-- 174 (386)
T ss_pred EEEEECCCCCHHH---HHHHHHHHHHC-----CCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCEEEHHHHHHHHH--
T ss_conf 5998789975699---99999876424-----4333478799999999997699886788650477013999999983--
Q ss_pred CCCCCCCCCCEEEE-EECCCCCCCHHHHCC-CCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHC-C--CE
Q ss_conf 43532234402346-302113475364178-6203431342699999999862998507874798999999873-9--60
Q gi|254780170|r 117 AFRPITYFDGQGFI-MHKKKGISSVSQLSG-ASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRA-H--RC 191 (342)
Q Consensus 117 ~Fs~~~~~dgq~~l-Vrk~~~i~s~~dL~G-~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~-G--r~ 191 (342)
. + ..+.-|...+ ++-..=...-.+|+. ++|....-.- .--..|++. .+.++++.+++...+.+.+.. + .+
T Consensus 175 ~-~-~l~I~gE~~l~I~h~Ll~~~~~~l~~Ik~VySHpqAl--~QC~~~L~~-~p~~~~~~~~sTa~Aa~~v~~~~~~~~ 249 (386)
T PRK10622 175 H-T-SLSIVGEMTLTIDHCVLVSGTTDLSTIETVYSHPQPF--QQCSKFLNR-YPHWKIEYTESTSAAMEKVAQANSPHV 249 (386)
T ss_pred C-C-CCEEEEEEEEEEEEEEECCCCCCHHHCEEEEEEHHHH--HHHHHHHHH-CCCCCEEEECCCHHHHHHHHCCCCCCH
T ss_conf 5-9-9889999997635423068999844464898765799--999999997-899845970780999999862799431
Q ss_pred EEEEEC
Q ss_conf 299825
Q gi|254780170|r 192 DAYTGD 197 (342)
Q Consensus 192 DA~~~D 197 (342)
-|+.+.
T Consensus 250 AAIas~ 255 (386)
T PRK10622 250 AALGSE 255 (386)
T ss_pred HHHCHH
T ss_conf 230348
No 101
>PRK11899 prephenate dehydratase; Provisional
Probab=81.14 E-value=4.3 Score=20.88 Aligned_cols=130 Identities=12% Similarity=0.077 Sum_probs=57.6
Q ss_pred EEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEE-CCCCCCHHHHHCCCEEEEEECCCCCCC------CHHCCCCC--C
Q ss_conf 06889898801509999999999679822025998-143100267743962799812432532------01102784--3
Q gi|254780170|r 48 AEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLP-LNAKERFLALQSKQIDILSRNTDWTLL------REISLGLA--F 118 (342)
Q Consensus 48 s~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~-~~~~~rf~aL~sG~vDil~~~~T~T~~------Rd~~~~v~--F 118 (342)
+|..+.|.+ ...-|...+++ .+.++ -++.+.|.++.+|++|..+=..--+.+ -|....-+ -
T Consensus 8 ayLGp~Gtf-------S~~Aa~~~f~~---~~~v~~~s~~~vf~aV~~g~~d~gvvPiENS~eG~V~~~~dll~~~~l~I 77 (284)
T PRK11899 8 AFQGEPGAN-------SHIACRDAFPD---MEPLPCATFEDAFEAVESGEADLAMIPIENSLAGRVADIHHLLPESGLHI 77 (284)
T ss_pred EEECCCCCH-------HHHHHHHHCCC---CCEECCCCHHHHHHHHHCCCCCEEEEEECCCCEEEHHHHHHHHCCCCCEE
T ss_conf 998999858-------99999987699---73660699999999997799887998641676475688898757389879
Q ss_pred CC-CCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHH-CC--CEEEE
Q ss_conf 53-2234402346302113475364178620343134269999999986299850787479899999987-39--60299
Q gi|254780170|r 119 RP-ITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYR-AH--RCDAY 194 (342)
Q Consensus 119 s~-~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~-~G--r~DA~ 194 (342)
.. .++--.+.++++++..+..+ ++|....-. ...-..|+++++ .+.+.+.+..++.+... .+ .+-|+
T Consensus 78 ~~E~~l~I~h~L~~~~~~~l~~I-----~~VySHPqa--l~QC~~~L~~~~--~~~~~~~sta~Aa~~v~~~~~~~~AAI 148 (284)
T PRK11899 78 VGEYFLPIHHQLMALPGATLEDI-----KTVHSHPHA--LGQCRKIIRALG--LKPVVAADTAGAAREVAERGDPSMAAL 148 (284)
T ss_pred EEEEEEEEEEEEEECCCCCHHHC-----EEEEEEHHH--HHHHHHHHHHCC--CCEEEECCCHHHHHHHHHCCCCCEEEC
T ss_conf 99886501145640799985417-----799975489--999999999769--824994380999999996699870110
Q ss_pred EE
Q ss_conf 82
Q gi|254780170|r 195 TG 196 (342)
Q Consensus 195 ~~ 196 (342)
.+
T Consensus 149 ~s 150 (284)
T PRK11899 149 AS 150 (284)
T ss_pred CH
T ss_conf 60
No 102
>PRK09701 D-allose transporter subunit; Provisional
Probab=81.05 E-value=4.6 Score=20.70 Aligned_cols=82 Identities=12% Similarity=-0.036 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 91389999999999998401244216899985794999871789883068898988015099999999996798220259
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQY 80 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~ 80 (342)
|||.+.+...+++.+++++.++++.+ +-+-+..---||-.. -.+=++.-|++++ .++++
T Consensus 1 m~k~~~~~~~~~~~~~~~~~a~a~~~---------iavi~k~~~npf~~~---------~~~Ga~~aAk~~G---~~v~v 59 (311)
T PRK09701 1 MNKYLKYFSGTLVGLMLSTSAFAAAE---------YAVVLKTLSNPFWVD---------MKKGIEDEAKTLG---VSVDI 59 (311)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCC---------EEEEECCCCCHHHHH---------HHHHHHHHHHHHC---CEEEE
T ss_conf 93699999999999998887743684---------999968889989999---------9999999999869---97999
Q ss_pred EECCC----C---CCHHHHHCCCEEEEEEC
Q ss_conf 98143----1---00267743962799812
Q gi|254780170|r 81 LPLNA----K---ERFLALQSKQIDILSRN 103 (342)
Q Consensus 81 v~~~~----~---~rf~aL~sG~vDil~~~ 103 (342)
...+. . +.+..+.+..+|.++-+
T Consensus 60 ~~~~~~~D~~~Qi~~Ie~~I~~gvdaIii~ 89 (311)
T PRK09701 60 FASPSEGDFQSQLQLFEDLSNKNYKGIAFA 89 (311)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 927987899999999999997599999991
No 103
>pfam00800 PDT Prephenate dehydratase. This protein is involved in Phenylalanine biosynthesis. This protein catalyses the decarboxylation of prephenate to phenylpyruvate.
Probab=81.00 E-value=2.5 Score=22.33 Aligned_cols=118 Identities=8% Similarity=0.124 Sum_probs=60.5
Q ss_pred HHHHHHHCCCCCEEEEEEC-CCCCCHHHHHCCCEEEEEECCCCCC------CCHHCCCCCCCCCCCC------CCEEEEE
Q ss_conf 9999996798220259981-4310026774396279981243253------2011027843532234------4023463
Q gi|254780170|r 65 RALSSAIFDDPSKIQYLPL-NAKERFLALQSKQIDILSRNTDWTL------LREISLGLAFRPITYF------DGQGFIM 131 (342)
Q Consensus 65 raiAaal~gd~~kVe~v~~-~~~~rf~aL~sG~vDil~~~~T~T~------~Rd~~~~v~Fs~~~~~------dgq~~lV 131 (342)
..-|...+++ .+++++. ++.+.|.++.+|++|..+-..--+. .-|... ++ +.+.+ -.+.+++
T Consensus 12 ~~Aa~~~~~~--~~~~~~~~s~~~v~~av~~g~~d~gvvPiENS~~G~V~~~~DlL~--~~-~l~I~~E~~l~I~~~L~~ 86 (181)
T pfam00800 12 EQAALKLFGQ--SVELVPCPSIEDVFEAVENGEADYAVVPIENSIEGSVNETLDLLL--ES-DLKIVGEVVLPIHHCLLA 86 (181)
T ss_pred HHHHHHHCCC--CCCEEECCCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHH--HC-CCEEEEEEEEEEEEEEEC
T ss_conf 9999986399--883786699999999997799866776221245556789999998--49-987999998622100101
Q ss_pred ECCCCCCCHHHHCC-CCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHH--CCCEEEEE
Q ss_conf 02113475364178-620343134269999999986299850787479899999987--39602998
Q gi|254780170|r 132 HKKKGISSVSQLSG-ASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYR--AHRCDAYT 195 (342)
Q Consensus 132 rk~~~i~s~~dL~G-~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~--~Gr~DA~~ 195 (342)
+++.. |+. ++|....- ...--..|++++.+.++++...+...+.+.+. .++-+|.+
T Consensus 87 ~~~~~------l~~I~~V~SHpq--al~QC~~~l~~~~p~~~~~~~~sTa~Aa~~v~~~~~~~~aAI 145 (181)
T pfam00800 87 RPGTD------LEDIKTVYSHPQ--ALAQCREFLEKHLPGAERVPVSSTAAAAKIVAAEGDKGAAAI 145 (181)
T ss_pred CCCCC------CCCCEEEEEEHH--HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCEEEE
T ss_conf 79986------012117884279--999999999984899889982765999999995699881340
No 104
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=76.73 E-value=6.2 Score=19.87 Aligned_cols=132 Identities=12% Similarity=0.052 Sum_probs=74.7
Q ss_pred CCCCCEEEEHH-----HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCC--C
Q ss_conf 89898801509-----9999999996798220259981431002677439627998124325320110278435322--3
Q gi|254780170|r 51 KANGDWKGFDV-----DFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPIT--Y 123 (342)
Q Consensus 51 d~~G~~~GfDV-----Dl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~--~ 123 (342)
.++|+..|.|+ +.+|+-|...+. ..|+|+.-+... +| +.++.+|+++++..+++.-|... -|...+ .
T Consensus 96 G~~G~ViGVD~s~~ML~~Ar~~a~~~G~--~NVeF~~Gdae~-LP-l~D~SfDvViSncVlnl~pDk~~--vl~E~~RVL 169 (258)
T PRK11873 96 GPTGKVIGVDMTPEMLAKARANARKAGY--TNVEFRLGEIEA-LP-VADGSVDVIISNCVINLSPDKER--VFREAFRVL 169 (258)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCC--CCEEEEEECCCC-CC-CCCCCEEEEEECCEEECCCCHHH--HHHHHHHHC
T ss_conf 9997799985999999999999997599--755999955531-36-89883519988246760798799--999999962
Q ss_pred CCCEEEEEECCC--CCCCHHHHC---CCCEEEEECCCHHHHHHHHHHHCCCC-CCEEEECCHHHHHHHHHCC
Q ss_conf 440234630211--347536417---86203431342699999999862998-5078747989999998739
Q gi|254780170|r 124 FDGQGFIMHKKK--GISSVSQLS---GASICVQAGTTTELTLADYFKAHNMK-YHPIVFERVEEIDAAYRAH 189 (342)
Q Consensus 124 ~dgq~~lVrk~~--~i~s~~dL~---G~~I~v~~GTT~e~~l~~~~~~~~~~-~~~v~~~~~~~a~~al~~G 189 (342)
-.|-.+.+ .|- .-.-..++. ..-++-..|..++....++++..|-. +++..-+...+.+.....|
T Consensus 170 KPGGRl~I-SDiv~~~~lP~~~r~d~~l~~~CiaGA~~~~~~~~~l~~aGF~~i~i~~~~~~~~~~~~~~~~ 240 (258)
T PRK11873 170 KPGGRFAI-SDVVLTGELPEELRNDAALYAGCVAGALSVEEYLAMLAEAGFVDITIEPKRDSREFLRGDASA 240 (258)
T ss_pred CCCCEEEE-EEEECCCCCCHHHHHCHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHCCC
T ss_conf 88978999-974127779999985989873120366859999999997699832998553279999840775
No 105
>TIGR03227 PhnS 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate binding protein. This ABC transporter periplasmic substrate binding protein component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238). The protein contains a match to pfam01547 for the "Bacterial extracellular solute-binding protein" domain.
Probab=76.25 E-value=6.4 Score=19.78 Aligned_cols=181 Identities=12% Similarity=0.138 Sum_probs=89.6
Q ss_pred HHHHHHHHCCCCCEEEEEECCCCCCHHHHH----CCCEEEEEECCCCCCCCHHCCCC--------------------CCC
Q ss_conf 999999967982202599814310026774----39627998124325320110278--------------------435
Q gi|254780170|r 64 CRALSSAIFDDPSKIQYLPLNAKERFLALQ----SKQIDILSRNTDWTLLREISLGL--------------------AFR 119 (342)
Q Consensus 64 ~raiAaal~gd~~kVe~v~~~~~~rf~aL~----sG~vDil~~~~T~T~~Rd~~~~v--------------------~Fs 119 (342)
..+.-++-+ .||+|++..+.+.+.-|+ +-++||++..-+. ..|....++ .+-
T Consensus 58 ~~aFek~tG---ikV~~v~~~sge~laRl~aEk~nPqaDVv~~~d~~-~~~A~~~GLl~py~~~~~~~ip~~~k~~dg~~ 133 (367)
T TIGR03227 58 FDAFEKAEG---IKVNIVEAGGGEVVERAAKEKGNPKADVIVTAPPF-IQQAAAEGLLANFNSDAAKAIPAIAKAADGLW 133 (367)
T ss_pred HHHHHHHHC---CEEEEEECCHHHHHHHHHHCCCCCCCEEEEECCHH-HHHHHHCCCCCCCCCCCHHHCCHHHHCCCCCE
T ss_conf 688888669---83899989779999999952279972099978579-99999788956278966455777663779838
Q ss_pred CCCCCCCEEEEEECC---CCCCCHHHHCC----CCEEEE-ECCCHH--HHHH-------------HHHHHCCCCCCEEEE
Q ss_conf 322344023463021---13475364178----620343-134269--9999-------------999862998507874
Q gi|254780170|r 120 PITYFDGQGFIMHKK---KGISSVSQLSG----ASICVQ-AGTTTE--LTLA-------------DYFKAHNMKYHPIVF 176 (342)
Q Consensus 120 ~~~~~dgq~~lVrk~---~~i~s~~dL~G----~~I~v~-~GTT~e--~~l~-------------~~~~~~~~~~~~v~~ 176 (342)
.++++...+|++.++ ...+|++||-. .+|... ..|++- ..|. +|+++...+. +...
T Consensus 134 ~~~~~~~~~~~yN~~~~k~~PkSW~DL~dP~ykgkI~~~dP~tS~~g~~~l~~~~~~~G~eD~a~~~~~~L~~N~-~~~~ 212 (367)
T TIGR03227 134 APFVKNYFSFAINPKLLKSAPASFADLLDADFKGKLAYSNPAQAADGMAVIILAFALFGSEDAAFAYLAKLEANN-KFHS 212 (367)
T ss_pred EEEECCEEEEEEEHHHHCCCCCCHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CEEC
T ss_conf 988555799999857705799889987285337828952877661799999999997098538899999887448-6724
Q ss_pred CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCC-------CCCEEEECCCCC--HHH-HHHHHHHHH
Q ss_conf 7989999998739602998250479999983678001002564442-------371010002777--579-999887744
Q gi|254780170|r 177 ERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIIS-------KSPLAPAIIQGD--TEW-YNIVSWTHY 246 (342)
Q Consensus 177 ~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~is-------kEPlg~avr~gD--~~w-~d~V~W~~~ 246 (342)
.+.......+.+|++.....|.+.-........-|-+ .+.|..-. .-|+++++-+|= ++. ..+|+|.+-
T Consensus 213 ~s~~~~~~~~~~GE~~va~g~~~~~~~~~~~~g~~v~-~v~P~~~~g~~~g~~~i~~~i~ivKga~n~e~AkkfidflLS 291 (367)
T TIGR03227 213 AGTGKLNALLNKGEIAVANGDLQMDLADAEHGGLNIK-IFFPAADAGEPPSAFAIPYAIGLVKGAPNQDAGKKLIDFLLS 291 (367)
T ss_pred CCCHHHHHHHHCCCEEEEEEECCHHHHHHHHCCCCCE-EEEECCCCCCCCCEEEEEEHHHHHCCCCCHHHHHHHHHHHCC
T ss_conf 7817999998578678995202043677762799702-895467778887348752203464499998999999999729
Q ss_pred HHHH
Q ss_conf 3311
Q gi|254780170|r 247 AMVT 250 (342)
Q Consensus 247 ali~ 250 (342)
.=+|
T Consensus 292 ~e~Q 295 (367)
T TIGR03227 292 ADAQ 295 (367)
T ss_pred HHHH
T ss_conf 9999
No 106
>PRK11013 DNA-binding transcriptional regulator LysR; Provisional
Probab=75.47 E-value=6.7 Score=19.66 Aligned_cols=178 Identities=12% Similarity=0.077 Sum_probs=99.8
Q ss_pred HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH
Q ss_conf 57949998717898830688989880150999999999967982202599814310026774396279981243253201
Q gi|254780170|r 32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE 111 (342)
Q Consensus 32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd 111 (342)
.+|.|++|+.+.+... +=..+...+.+.- -...+++...+.......|.++++|+.+......+.
T Consensus 92 ~~G~lri~~~~~~~~~-----------~lp~~l~~f~~~~--P~v~v~i~~~~~~~~~~~l~~~~~Dl~l~~~~~~~~-- 156 (309)
T PRK11013 92 RQGQLSIACLPVFSQS-----------LLPGLCQPFLARY--PDVSLNIVPQESPLLEEWLSAQRHDLGLTETLHTPA-- 156 (309)
T ss_pred CCCCCCCCCCHHHHHH-----------HCCHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCCC--
T ss_conf 3676565300678988-----------6652315678438--980799998985999999975997789960788998--
Q ss_pred HCCCCCCCCCCCCCCEEEEEECCC-----CCCCHHHHCCCCE-EEEECCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHH
Q ss_conf 102784353223440234630211-----3475364178620-34313426999999998629985078-7479899999
Q gi|254780170|r 112 ISLGLAFRPITYFDGQGFIMHKKK-----GISSVSQLSGASI-CVQAGTTTELTLADYFKAHNMKYHPI-VFERVEEIDA 184 (342)
Q Consensus 112 ~~~~v~Fs~~~~~dgq~~lVrk~~-----~i~s~~dL~G~~I-~v~~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~~ 184 (342)
++.+. +.+.+...++++++. ..-+++||.+... ....++.....+.+++...+...+++ ..++......
T Consensus 157 ---~~~~~-~l~~~~~~~v~~~~hpla~~~~i~~~dL~~~~~i~~~~~~~~r~~~~~~~~~~g~~~~~~~e~~~~~~~~~ 232 (309)
T PRK11013 157 ---GTERT-ELLTLDEVCVLPDGHPLAAKKVLTPDDFQGENFISLSRTDSYRQLLDQLFAEHGVKRRMVVETHSAASVCA 232 (309)
T ss_pred ---CCEEE-EEEEEEEEEECCCCCCCCCCCCCCHHHHCCCCEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHH
T ss_conf ---75788-86420146754789800049999999973898696389994999999999976999776999896999999
Q ss_pred HHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCCH
Q ss_conf 9873960299825047999998367800100256--44423710100027775
Q gi|254780170|r 185 AYRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGDT 235 (342)
Q Consensus 185 al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD~ 235 (342)
....|-.=++..+.. .... ..++ ..+.| ..+.. .++.+.+++-+
T Consensus 233 lV~~G~Gvail~~~~---~~~~--~~~g-~~~~pl~~~~~~-~~~lv~~~~r~ 278 (309)
T PRK11013 233 MVRAGLGVSIVNPLT---ALDY--AGSG-LVVRPFSISVPF-TVSLIRPLHRP 278 (309)
T ss_pred HHHHCCEEEEECHHH---HHHH--HHCC-EEEEECCCCCCE-EEEEEEECCCC
T ss_conf 999799699946999---9866--2199-099988889961-89999989997
No 107
>TIGR02294 nickel_nikA nickel ABC transporter, periplasmic nickel-binding protein; InterPro: IPR011980 Members of this family are periplasmic nickel-binding proteins of nickel ABC transporters. Nickel is bound specifically, albeit weakly, through water molecules positioned in the binding site. The amino acids whose side chains line the binding site include Tyr-44, Met-49, Trp-122, Arg-159, Trp-420, and Tyr-424 (numbering based on the precursor sequence of Escherichia coli NikA) with the Arg contributing a hydrogen bond indirectly through a water molecule ..
Probab=75.21 E-value=5 Score=20.49 Aligned_cols=80 Identities=14% Similarity=-0.017 Sum_probs=57.8
Q ss_pred CCCEEEECCHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHCCCCHHHCC-CCCCCCCCCEEEECCCCCHHHHH-HHHH
Q ss_conf 8507874798999999873960299825----0479999983678001002-56444237101000277757999-9887
Q gi|254780170|r 170 KYHPIVFERVEEIDAAYRAHRCDAYTGD----ISALYALKLTNDRPSEHVI-LPDIISKSPLAPAIIQGDTEWYN-IVSW 243 (342)
Q Consensus 170 ~~~~v~~~~~~~a~~al~~Gr~DA~~~D----~s~La~~~~~~~~p~~~~i-l~e~iskEPlg~avr~gD~~w~d-~V~W 243 (342)
++++.+.++.+....||++|.+|-+.+| ..+-...-.++....+|.. |.++++.--|.+=..+-|....| .||-
T Consensus 199 kV~vKVIPD~~TR~LAfe~Ge~dLi~G~~rGtG~i~~DtF~ql~~~~~Y~t~lS~P~~Tr~L~lNt~~kd~~~~Dl~VR~ 278 (513)
T TIGR02294 199 KVTVKVIPDAETRALAFESGEVDLIFGNERGTGVIDLDTFAQLKEDGKYQTALSQPMETRMLLLNTGKKDEATSDLAVRQ 278 (513)
T ss_pred CEEEEEECCHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHCCCCCCEECCCCHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 13788736733688876318610232366567401422577631287732010475112454332201022000268999
Q ss_pred HHHHHH
Q ss_conf 744331
Q gi|254780170|r 244 THYAMV 249 (342)
Q Consensus 244 ~~~ali 249 (342)
.++-+|
T Consensus 279 A~nhav 284 (513)
T TIGR02294 279 ALNHAV 284 (513)
T ss_pred HHHHCC
T ss_conf 974034
No 108
>COG4939 Major membrane immunogen, membrane-anchored lipoprotein [Function unknown]
Probab=74.25 E-value=2.1 Score=22.85 Aligned_cols=69 Identities=17% Similarity=0.241 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCC--------------HHHHHHHHCCEEEEEEECC---CCCCEEECCCCCEEEEHHHH
Q ss_conf 913899999999999984012442--------------1689998579499987178---98830688989880150999
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNA--------------SILGDIKKRGFLKCGINTG---LVGFAEVKANGDWKGFDVDF 63 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a--------------~tLd~Vk~rG~L~vGv~~~---~ppfs~~d~~G~~~GfDVDl 63 (342)
|.|..+..++++++++..+....- ...|+-.-++.+.+-+..+ ..-+.|.|.+|++.+=|.|.
T Consensus 1 mvk~g~~~~~~~~~LL~aCg~sd~s~~t~~dGtY~~~y~~fDd~gwk~f~~iti~dGKiv~~~ydy~~k~G~~Ks~DAdy 80 (147)
T COG4939 1 MVKYGLVGMIVALSLLTACGKSDFSKMTFNDGTYQGHYESFDDHGWKAFVTITIQDGKIVACTYDYRDKKGNIKSDDADY 80 (147)
T ss_pred CCEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCEEEEEEEEEECCCCCCCCCCHHH
T ss_conf 91303659999999998706664455433587256344156534761107999828879998855064778736653336
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780170|r 64 CRALSS 69 (342)
Q Consensus 64 ~raiAa 69 (342)
.++.-.
T Consensus 81 ~~~mk~ 86 (147)
T COG4939 81 AGEMKY 86 (147)
T ss_pred HHHHHH
T ss_conf 777777
No 109
>PRK07377 hypothetical protein; Provisional
Probab=72.58 E-value=6.7 Score=19.67 Aligned_cols=67 Identities=12% Similarity=0.194 Sum_probs=29.8
Q ss_pred HHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCC-CCCHHHHHCCCEEEEEEC
Q ss_conf 998579499987178988306889898801509999999999679822025998143-100267743962799812
Q gi|254780170|r 29 DIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNA-KERFLALQSKQIDILSRN 103 (342)
Q Consensus 29 ~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~-~~rf~aL~sG~vDil~~~ 103 (342)
.|+.+=++|.|+-.+... ..+..+...--++-+.+.+ --.++|.++..- +..-.||.+++|+.+|..
T Consensus 70 avrss~~~rlGvl~~~~~----~~~s~~~qL~~~lr~il~k----yhlRLElv~Y~~~qaL~~AL~~keVHaic~~ 137 (185)
T PRK07377 70 AVRSSLVMRLGVLEDEET----KTSSVFDQLKDQLRTILDK----YHLRLELVPYPDLQALEQALHSKEVHAICLD 137 (185)
T ss_pred HHHHHHEEEEEEECCCCC----CCHHHHHHHHHHHHHHHHH----HEEEEEEEECCCHHHHHHHHHCCCCCEEECC
T ss_conf 987522688777516666----6504689999999999875----3257887505999999999860860189705
No 110
>PRK10959 outer membrane protein W; Provisional
Probab=71.06 E-value=3.8 Score=21.24 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 913899999999999984012442
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNA 24 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a 24 (342)
|||.++.++++..+++..+.+.++
T Consensus 1 Mkk~~~a~~~~~a~~s~~A~A~~a 24 (212)
T PRK10959 1 MKKLTVAALAVATLLSGSAFAHEA 24 (212)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 937899999999875167788327
No 111
>PRK10137 predicted glycosyl hydrolase; Provisional
Probab=70.71 E-value=3.9 Score=21.16 Aligned_cols=29 Identities=17% Similarity=0.442 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 91389999999999998401244216899
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNASILGD 29 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a~tLd~ 29 (342)
|.|+++..++|++++.++.|+..++-...
T Consensus 1 ~~~~~~~~~~~~~~~~~s~~~~~a~~f~n 29 (781)
T PRK10137 1 KIKTILTPVTCALLISFSAHAANADNYKN 29 (781)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCHHHHCC
T ss_conf 96304458999999976412054777444
No 112
>PRK06934 flavodoxin; Provisional
Probab=70.40 E-value=8 Score=19.18 Aligned_cols=35 Identities=14% Similarity=0.132 Sum_probs=26.5
Q ss_pred CEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 30688989880150999999999967982202599
Q gi|254780170|r 47 FAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYL 81 (342)
Q Consensus 47 fs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v 81 (342)
=+..-.+|+.+|=-=-+++.|+...+||.-+|+-+
T Consensus 60 as~~~~~~~~~GnT~~vAe~Iq~~tGgDLfeIe~~ 94 (221)
T PRK06934 60 ASILQKNGEVLGSTQYVAQIIQEETGGDLFRIETV 94 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 43787258668769999999999878967999878
No 113
>PRK09408 ompX outer membrane protein X; Provisional
Probab=67.71 E-value=9 Score=18.85 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEECC
Q ss_conf 9138999999999999840124421689998579499987178
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNASILGDIKKRGFLKCGINTG 43 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a~tLd~Vk~rG~L~vGv~~~ 43 (342)
|||.+++++++.++...+..+.+++ -++.+|.-+.
T Consensus 1 mkk~~~~s~~~~~~~~~a~~a~A~~--------sTvS~GYAQs 35 (171)
T PRK09408 1 MKKIACLSALAAVLAFTAGTAVAAT--------STVTGGYAQS 35 (171)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCC--------CEEEEEEEEE
T ss_conf 9224789999999885666664257--------6698788642
No 114
>PRK10877 thiol:disulfide interchange protein DsbC; Provisional
Probab=67.46 E-value=10 Score=18.52 Aligned_cols=35 Identities=23% Similarity=0.232 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCE
Q ss_conf 91389999999999998401244216899985794
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNASILGDIKKRGF 35 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a~tLd~Vk~rG~ 35 (342)
|||++++..++++..+..+.+-.+..-+++.+.|.
T Consensus 1 mkk~l~~~~~l~~~~s~~a~aDea~i~~~l~k~g~ 35 (232)
T PRK10877 1 MKKGFMLFTLLAAAFSGFAHADDAAIQQTLAKLGI 35 (232)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
T ss_conf 92669999999999862524379999999998399
No 115
>PRK11482 putative DNA-binding transcriptional regulator; Provisional
Probab=67.44 E-value=10 Score=18.52 Aligned_cols=157 Identities=11% Similarity=0.035 Sum_probs=84.4
Q ss_pred EEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCC----CCCHHHHCCC-CEEEE
Q ss_conf 025998143100267743962799812432532011027843532234402346302113----4753641786-20343
Q gi|254780170|r 77 KIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKG----ISSVSQLSGA-SICVQ 151 (342)
Q Consensus 77 kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~----i~s~~dL~G~-~I~v~ 151 (342)
++.+......+....|.+|++|+++....... ..+. ..+.|.|...++++++.. --+.+++... -|.+.
T Consensus 94 ~i~l~~~~~~~~~~~L~~~~~Dl~i~~~~~~~-----~~~~-~~~L~~d~~v~v~~~~HP~~~~~~t~e~~~~~~Hv~~~ 167 (266)
T PRK11482 94 QLLLRNIPISDAENQLSQFQTDLIIDTHSCTN-----RTIQ-HHVLFTDNMVLVCRQGHPCLSLEDDEETLDNAAHTLLL 167 (266)
T ss_pred CEEEEECCCCCHHHHHHCCCCCEEEECCCCCC-----CCEE-EEEEEECCEEEEEECCCCCCCCCCCHHHHHCCCCEEEE
T ss_conf 86999568657889985699888985688898-----7638-99999428899998968556999999999629999997
Q ss_pred ECCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC-CCCCCCCEEEE
Q ss_conf 13426999999998629985078-74798999999873960299825047999998367800100256-44423710100
Q gi|254780170|r 152 AGTTTELTLADYFKAHNMKYHPI-VFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILP-DIISKSPLAPA 229 (342)
Q Consensus 152 ~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~-e~iskEPlg~a 229 (342)
.++.....+.++....+.+-++. ...+...+...+.+ .|.+.+=-..++-.. .+....+++| .++..+++.+.
T Consensus 168 ~~~~~~~~~~~~l~~~~~~R~i~~~~~~~~~~~~lv~~--tdli~~~P~~la~~~---~~~~~L~~lp~pp~~~~~~~~~ 242 (266)
T PRK11482 168 PEGQNFSGLRQRLQEMFPDRQISFSSYNILTIAALIAS--SDMLGLMPSRFYNLF---SRCWPLEKLPFPSLNEEQIDFS 242 (266)
T ss_pred CCCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHH--CCEEEEHHHHHHHHH---HHHCCCEEECCCCCCCCCEEEE
T ss_conf 69998779999999749998599997999999999984--999985899999998---8767987946899889964699
Q ss_pred C-----CCCCHHHHHHHHHHHHHH
Q ss_conf 0-----277757999988774433
Q gi|254780170|r 230 I-----IQGDTEWYNIVSWTHYAM 248 (342)
Q Consensus 230 v-----r~gD~~w~d~V~W~~~al 248 (342)
+ ...|+ ..+|+...+
T Consensus 243 l~Wh~r~~~DP----~~~wlr~~i 262 (266)
T PRK11482 243 LHYNKLSLRDP----VLENVIDVI 262 (266)
T ss_pred EEECCCCCCCC----HHHHHHHHH
T ss_conf 99885542676----899999999
No 116
>pfam06649 DUF1161 Protein of unknown function (DUF1161). This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=65.55 E-value=8.6 Score=18.98 Aligned_cols=35 Identities=14% Similarity=0.147 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHHHHHHH-CCCCCHHH----HHHHHCCE
Q ss_conf 9138999999999999840-12442168----99985794
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTS-FSTNASIL----GDIKKRGF 35 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~-~aa~a~tL----d~Vk~rG~ 35 (342)
|+|.++...++++.....+ ...+.+.- .+|...|+
T Consensus 1 Mkk~~l~~~l~lla~~alAA~~sCE~lk~eI~~KI~~nGV 40 (75)
T pfam06649 1 MKRLLLAVALLLLAASALAAPKSCEELKAEIEAKIQANGV 40 (75)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
T ss_conf 9246999999997134531558889999999999997699
No 117
>COG2107 Predicted periplasmic solute-binding protein [General function prediction only]
Probab=64.40 E-value=12 Score=18.15 Aligned_cols=49 Identities=27% Similarity=0.280 Sum_probs=35.8
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEE
Q ss_conf 17862034313426999999998629985078747989999998739602998
Q gi|254780170|r 143 LSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYT 195 (342)
Q Consensus 143 L~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~ 195 (342)
|++++|+|.--.||...| ++-..+++++| +-..++...|..+|++||-+
T Consensus 93 l~~~rvavpG~~TTA~lL---~rl~~p~~~~V-~m~fdeI~~Avl~G~VDaGv 141 (272)
T COG2107 93 LKGKRVAVPGEMTTAALL---FRLAYPKAEIV-YMPFDEIIPAVLEGKVDAGV 141 (272)
T ss_pred CCCCEEECCCCCCHHHHH---HHHHCCCCEEE-EEEHHHHHHHHHCCCCCCCE
T ss_conf 566657567853189999---99867873699-71288878999728876535
No 118
>pfam06551 DUF1120 Protein of unknown function (DUF1120). This family consists of several hypothetical bacterial proteins of unknown function.
Probab=63.24 E-value=2.6 Score=22.29 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEE
Q ss_conf 913899999999999984012442168999857949998
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNASILGDIKKRGFLKCG 39 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a~tLd~Vk~rG~L~vG 39 (342)
|||.++..++++.++.+.+.+.++..-+..|-+|+|+-+
T Consensus 1 mkK~l~~~~i~a~l~~~~ssa~aa~~ta~LkV~G~i~p~ 39 (145)
T pfam06551 1 MKKNLAATAIAAGLAVLATSAQAADSTAVLKVTGTITPG 39 (145)
T ss_pred CCHHHHHHHHHHHHHHHHCCHHHCCCCCEEEEEEEEECC
T ss_conf 923789999999999860314225774469999998667
No 119
>TIGR03261 phnS2 putative 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=62.42 E-value=13 Score=17.92 Aligned_cols=179 Identities=17% Similarity=0.148 Sum_probs=83.4
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHH----CCCEEEEEECCCCCCCCHHCCCC---------C-----CC----
Q ss_conf 99999999967982202599814310026774----39627998124325320110278---------4-----35----
Q gi|254780170|r 62 DFCRALSSAIFDDPSKIQYLPLNAKERFLALQ----SKQIDILSRNTDWTLLREISLGL---------A-----FR---- 119 (342)
Q Consensus 62 Dl~raiAaal~gd~~kVe~v~~~~~~rf~aL~----sG~vDil~~~~T~T~~Rd~~~~v---------~-----Fs---- 119 (342)
.++++.-++-- ..||+++..+..+.+.-|. +.+.||+++.......+-...++ + |.
T Consensus 37 ~i~~~Fek~~t--gIkV~~v~~~tgel~~rl~aEk~~p~aDV~~g~~~~~~~~~~~~gll~~y~~~~~~~l~~~~~d~~~ 114 (334)
T TIGR03261 37 KYKDAFEKVNP--DIKINWVRDSTGIITAKLLAEKNNPQADVVWGLAASSLALLDKEGMLKPYKPKGLDALNPKFRDAKN 114 (334)
T ss_pred HHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCHHHCCHHHCCCCC
T ss_conf 99999997779--9489999897299999999645799865998456578999886043157775305447886529788
Q ss_pred CCCCC----CCEEEEEECC----CC---CCCHHHHCC----CCEEEEE-CC--CHHHHHHH------------HHHHCCC
Q ss_conf 32234----4023463021----13---475364178----6203431-34--26999999------------9986299
Q gi|254780170|r 120 PITYF----DGQGFIMHKK----KG---ISSVSQLSG----ASICVQA-GT--TTELTLAD------------YFKAHNM 169 (342)
Q Consensus 120 ~~~~~----dgq~~lVrk~----~~---i~s~~dL~G----~~I~v~~-GT--T~e~~l~~------------~~~~~~~ 169 (342)
.++++ .+.+|+..++ .+ .++++||-. -+|++.. .+ |.-..+.. |+++-..
T Consensus 115 ~~~~~g~~~~~~~i~yN~~~~~~~~~p~P~sw~DL~dp~ykg~i~~~~p~~sg~~~~~l~~~~~~~G~d~g~~~l~~l~~ 194 (334)
T TIGR03261 115 PPHWVGMDAWMAAICFNTVEAKKKGLPKPTSWEDLTKPEYKGHIVMPNPASSGTGFLDVSAWLQMMGEDKGWDYMDKLHK 194 (334)
T ss_pred CCEEEEEEEEEEEEEEEHHHCCCCCCCCCCCHHHHCCHHHCCEEECCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_conf 85168875246789974444042589999999997094748958734888633899999999997352889999999986
Q ss_pred CCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC-CCCCCCCEEEECCCCCHHH---HHHHHHHH
Q ss_conf 8507874798999999873960299825047999998367800100256-4442371010002777579---99988774
Q gi|254780170|r 170 KYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILP-DIISKSPLAPAIIQGDTEW---YNIVSWTH 245 (342)
Q Consensus 170 ~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~-e~iskEPlg~avr~gD~~w---~d~V~W~~ 245 (342)
+. .....+..+....+.+|++....+-.......+ ....|-+ .+.| |.....+-+.++-+|-++= +.+++|.+
T Consensus 195 N~-~~~~~~~~~~~~~v~~Ge~~ig~~~~~~~~~~~-~~g~pv~-~v~P~eG~~~~~~~~~Ivk~a~n~~~Ak~Fidfll 271 (334)
T TIGR03261 195 NI-AVYTHSGSKPCKLAGMGEFPIGISMAYRALKEK-KKGAPID-VVFPKEGLGWDIEATAIIKGSKNNDAAKKLVDWSI 271 (334)
T ss_pred HH-CCCCCCCCHHHHHHHCCCEEEEEEECCHHHHHH-HCCCCEE-EEECCCCCEEEEEEEEEECCCCCHHHHHHHHHHHC
T ss_conf 32-416777638889986598579997354578876-4389733-89458984787735888879989899999999976
No 120
>COG1511 Predicted membrane protein [Function unknown]
Probab=61.50 E-value=13 Score=17.82 Aligned_cols=72 Identities=11% Similarity=0.072 Sum_probs=47.7
Q ss_pred CCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEE
Q ss_conf 42168999857949998717898830688989880150999999999967982202599814310026774396279981
Q gi|254780170|r 23 NASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSR 102 (342)
Q Consensus 23 ~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~ 102 (342)
-.+.++-.-....+.|+|-...-|..+ .|-++++...+.+.+..++. .+|.-++..+--..|.+|++++.+-
T Consensus 36 i~s~~dpy~~~~~lpVAVVNeDkg~t~-------~Gk~~~iG~~~V~~L~kn~~-~~w~fVs~~~A~~gl~~g~Yya~i~ 107 (780)
T COG1511 36 LGALWDPYGNTSKLPVAVVNEDKGATF-------NGKKVNIGDDLVKTLKKNKS-LDWHFVSREEAEKGLKDGKYYAVIY 107 (780)
T ss_pred HCCCCCCCCCCCCCCEEEEECCCCCCC-------CCCEEEHHHHHHHHHCCCCC-CCEEEECHHHHHHHHHHCCCEEEEE
T ss_conf 324578666788894699857766664-------77511078999998606889-8628967898986776078439998
No 121
>pfam02621 DUF178 Putative periplasminc binding protein (DUF178). This family of proteins belong to the periplasmic binding protein clan.
Probab=61.12 E-value=13 Score=17.77 Aligned_cols=169 Identities=12% Similarity=0.149 Sum_probs=84.2
Q ss_pred CEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHH-CCCC--CCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEE
Q ss_conf 2025998143100267743962799812432532011-0278--435322344023463021134753641786203431
Q gi|254780170|r 76 SKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREI-SLGL--AFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQA 152 (342)
Q Consensus 76 ~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~-~~~v--~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~ 152 (342)
.+++++.-+.++.-..|.+|++|+..-+. +..-|.. .+.+ +++..-.-...++++-....+. ..++|++..
T Consensus 25 ~~~~~~~~~P~~Ln~~l~~g~lDv~~iSs-~~y~~~~~~y~ilp~~~i~s~G~v~Svll~s~~p~~-----~~~~Ial~~ 98 (248)
T pfam02621 25 LDFELVLADPETLNRLLLEGELDVAAISS-IAYARIADDYALLPDLSIAALGRVYSVLLVSREELE-----GKLRVALPG 98 (248)
T ss_pred CCEEEEECCHHHHHHHHHCCCCCEEECCH-HHHHHCHHHHEECCCCEEEEECCCCCEEEEECCCCC-----CCCEEECCC
T ss_conf 97599868999999999869998875589-999857202315777458852797513899568867-----687287699
Q ss_pred CCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEE--EEECCHHHHHHHHHCCCCHHHCCC--CC---CCCCCC
Q ss_conf 34269999999986299850787479899999987396029--982504799999836780010025--64---442371
Q gi|254780170|r 153 GTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDA--YTGDISALYALKLTNDRPSEHVIL--PD---IISKSP 225 (342)
Q Consensus 153 GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA--~~~D~s~La~~~~~~~~p~~~~il--~e---~iskEP 225 (342)
.|+|-..|-..+-....+ +++.. .+...+..++. || +++|.. |... +.+-+.+. .+ ..+.-|
T Consensus 99 ~S~TS~~Llkill~~~~~--~~~~~--~~~~~~~~~~~-da~LlIGD~A-l~~~-----~~~~~~v~DLG~~W~~~TglP 167 (248)
T pfam02621 99 ESTTSVLLLKLLLPEAYK--LVPMP--DEIEPAVLEGE-DAGLLIGDEA-LTYA-----REGLPKVYDLGELWEELTGLP 167 (248)
T ss_pred CCHHHHHHHHHHHHHCCC--EEECC--CHHHHHHHCCC-CEEEEECHHH-CCCC-----CCCCEEEEEHHHHHHHHHCCC
T ss_conf 778999999999864572--43167--14667874489-7589975043-4500-----059728863889998987898
Q ss_pred E--EE-ECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 0--10-0027775799998877443311212330152089886
Q gi|254780170|r 226 L--AP-AIIQGDTEWYNIVSWTHYAMVTAEELGITQKNINQVS 265 (342)
Q Consensus 226 l--g~-avr~gD~~w~d~V~W~~~ali~Aee~git~~nv~~~~ 265 (342)
+ |. ++|++=++ +...-...++.++=++|. +|.+++.
T Consensus 168 fvfa~wv~rr~~~~--~~~~~l~~~l~~S~~~~~--~~~~~~~ 206 (248)
T pfam02621 168 FVFGLWVVRRDLGL--ELAKELEEALRKSKEYAL--KHPEEIA 206 (248)
T ss_pred CEEEEEEEECCCCH--HHHHHHHHHHHHHHHHHH--HCHHHHH
T ss_conf 50488887545688--899999999999999998--7999999
No 122
>PRK09755 putative binding protein; Provisional
Probab=60.55 E-value=14 Score=17.71 Aligned_cols=73 Identities=15% Similarity=0.097 Sum_probs=40.3
Q ss_pred CCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCC---CCHHHHHHHHHHHH
Q ss_conf 50787479899999987396029982504799999836780010025644423710100027---77579999887744
Q gi|254780170|r 171 YHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQ---GDTEWYNIVSWTHY 246 (342)
Q Consensus 171 ~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~---gD~~w~d~V~W~~~ 246 (342)
++.+..++....+.+|.+|++|........+...... .+.+..++|. ++..-+++-+++ +|.+.|..+.+.++
T Consensus 242 i~~~~i~d~~t~~~~l~sGevD~~~~~~~~~~~~~~~--~~~~~~~~p~-~~~~y~~~N~~~~p~~D~~VRqAi~~AiD 317 (535)
T PRK09755 242 VEYLALDNSVTGYNRYRAGEVDLTWVPAQQIPAIEKS--LPGELRIIPR-LNSEYYNFNLEKPPFNDVRVRRALYLTVD 317 (535)
T ss_pred EEEEECCCHHHHHHHHHCCCCEEECCCHHHHHHHHHC--CCCCEEEEEC-CCEEEEEEECCCCCCCCHHHHHHHHHHHC
T ss_conf 6999779689999998779823851898999999745--6885899832-53389976046576679999999997537
No 123
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=60.07 E-value=5.9 Score=20.02 Aligned_cols=46 Identities=15% Similarity=0.116 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHCCCCC--CEEEECCHHHH---HHHHHCCCEEEEEECCHHHHHHHH
Q ss_conf 26999999998629985--07874798999---999873960299825047999998
Q gi|254780170|r 155 TTELTLADYFKAHNMKY--HPIVFERVEEI---DAAYRAHRCDAYTGDISALYALKL 206 (342)
Q Consensus 155 T~e~~l~~~~~~~~~~~--~~v~~~~~~~a---~~al~~Gr~DA~~~D~s~La~~~~ 206 (342)
.++..++++++...+.+ ..+.+.+.++| ...+.+|. |-..||-..+
T Consensus 129 vTd~~~k~~y~~~~p~v~~~hIlv~~e~~A~~v~~~l~~G~------dF~~lAk~~S 179 (298)
T PRK04405 129 ITTAQLKKAWKSYQPKVTVQHILVSKKSTAETVIKKLKDGK------DFAKLAKKYS 179 (298)
T ss_pred CCHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHCCC------CHHHHHHHHC
T ss_conf 88899999998549865889988678999999999987899------7899999838
No 124
>pfam10613 Lig_chan-Glu_bd Ligated ion channel L-glutamate- and glycine-binding site. This region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine. It is found in association with Lig_chan, pfam00060.
Probab=59.96 E-value=10 Score=18.47 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=17.1
Q ss_pred CCCEEEEHHHHHHHHHHHHC
Q ss_conf 89880150999999999967
Q gi|254780170|r 53 NGDWKGFDVDFCRALSSAIF 72 (342)
Q Consensus 53 ~G~~~GfDVDl~raiAaal~ 72 (342)
+.++.||-|||.+.+|+.+.
T Consensus 15 ~~~yeGyciDLl~~ls~~l~ 34 (65)
T pfam10613 15 NERFEGYCIDLLDELAKILG 34 (65)
T ss_pred CCCEEEHHHHHHHHHHHHCC
T ss_conf 73240279999999999849
No 125
>TIGR02977 phageshock_pspA phage shock protein A; InterPro: IPR014319 Members of this protein are the phage shock protein PspA, from the phage shock operon. PspA appears to maintain the proton motive force under stress conditions that include over expression of certain phage secretins, heat shock, ethanol and protein export defects..
Probab=59.87 E-value=6.9 Score=19.59 Aligned_cols=26 Identities=23% Similarity=0.567 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHH-HHHH
Q ss_conf 57999988774433112123301520898862267177-8876
Q gi|254780170|r 235 TEWYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPD-VQRF 276 (342)
Q Consensus 235 ~~w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~-i~r~ 276 (342)
|.|.|||| +|+++++-.+.||+ +-||
T Consensus 5 SRf~DIvN----------------sN~naLLDkAEDPeKMiRL 31 (222)
T TIGR02977 5 SRFADIVN----------------SNLNALLDKAEDPEKMIRL 31 (222)
T ss_pred HHHHHHHH----------------HHHHHHHHCCCCHHHHHHH
T ss_conf 17688999----------------8688775247894899999
No 126
>PRK13861 type IV secretion system protein VirB9; Provisional
Probab=59.56 E-value=6.3 Score=19.82 Aligned_cols=22 Identities=23% Similarity=0.621 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9138999999999999840124
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFST 22 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa 22 (342)
|.|++++++++++++++.+.+.
T Consensus 1 mmk~l~~~~~~~l~~~~~a~A~ 22 (293)
T PRK13861 1 MIKKLFLTLACLLFAAIGALAE 22 (293)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9089999999999861266787
No 127
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain; InterPro: IPR005976 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene , . Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes . It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I .; GO: 0016163 nitrogenase activity, 0009399 nitrogen fixation, 0016612 molybdenum-iron nitrogenase complex.
Probab=58.82 E-value=5.4 Score=20.24 Aligned_cols=229 Identities=17% Similarity=0.236 Sum_probs=115.9
Q ss_pred HHHHHHCCEEEEEEECCCCCC----EEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEE
Q ss_conf 899985794999871789883----0688989880150999999999967982202599814310026774396279981
Q gi|254780170|r 27 LGDIKKRGFLKCGINTGLVGF----AEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSR 102 (342)
Q Consensus 27 Ld~Vk~rG~L~vGv~~~~ppf----s~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~ 102 (342)
++.-|+-|.+. +.=.-|| +|..+ -.+|||. |.|-|+..+-..+. +-+.....=.+++|-|+.+
T Consensus 165 i~nAk~~g~ip---~dfPVpFAHTPsFVGS--HitGYD~-M~kGil~~l~~~~~-------~das~~~~~~~~~iN~ipG 231 (526)
T TIGR01286 165 IGNAKEEGVIP---DDFPVPFAHTPSFVGS--HITGYDS-MLKGILETLTKGSE-------DDASDKKKSANGKINIIPG 231 (526)
T ss_pred HHHHHCCCCCC---CCCCCCCCCCCCCCCC--EECCCCH-HHHHHHHHHHCCCH-------HHHHHHHHCCCCEEEEEEC
T ss_conf 98753068888---8876786547773265--0025322-68999998505851-------1334544203862778407
Q ss_pred CCCC--CCCCHHC-----CCCCCCCCCCCCCE-EEEEECC------CCCCCHHHHCC-----CCEEEEECCCHHHHHHHH
Q ss_conf 2432--5320110-----27843532234402-3463021------13475364178-----620343134269999999
Q gi|254780170|r 103 NTDW--TLLREIS-----LGLAFRPITYFDGQ-GFIMHKK------KGISSVSQLSG-----ASICVQAGTTTELTLADY 163 (342)
Q Consensus 103 ~~T~--T~~Rd~~-----~~v~Fs~~~~~dgq-~~lVrk~------~~i~s~~dL~G-----~~I~v~~GTT~e~~l~~~ 163 (342)
==|+ ==-|+-+ .+|+ +...-|.. .+=.|+| .+-++++|+++ .||..|.=+ +++. ++|
T Consensus 232 FdTYCiGN~R~~Kr~L~~mGv~--~~~L~D~~~~LDsP~dGey~mY~gGT~lee~~~A~nA~atl~LQ~y~-l~kT-~eY 307 (526)
T TIGR01286 232 FDTYCIGNVREIKRILSLMGVE--YTLLSDAEESLDSPADGEYRMYDGGTKLEELKDALNAEATLVLQEYT-LRKT-KEY 307 (526)
T ss_pred CCCCEECCHHHHHHHHHHHCCC--CEEECCCHHHCCCCCCCCCCCCCCCCCHHHHHCCCCHHHEEECCCCC-CHHH-HHH
T ss_conf 6751116568897899872898--30304655436798888712267788657642360101122212434-2356-886
Q ss_pred HHHCCC----CCC-EEEECCHHHHHHHHHC--------------CC-EEEEEECCHHHHHHHHH-CCCCHHHCCCCC---
Q ss_conf 986299----850-7874798999999873--------------96-02998250479999983-678001002564---
Q gi|254780170|r 164 FKAHNM----KYH-PIVFERVEEIDAAYRA--------------HR-CDAYTGDISALYALKLT-NDRPSEHVILPD--- 219 (342)
Q Consensus 164 ~~~~~~----~~~-~v~~~~~~~a~~al~~--------------Gr-~DA~~~D~s~La~~~~~-~~~p~~~~il~e--- 219 (342)
.....- .++ |.-++..++-+.++.. || +||++.-.+=|-|.|.. +.+|+ +++-=-
T Consensus 308 ie~~W~~et~~l~~PlGv~~TDeFLm~vs~isg~eiP~~l~~eRGRlVDamtDs~awlHGKr~Ai~GDPD-lV~al~~F~ 386 (526)
T TIGR01286 308 IEKKWKQETVKLEIPLGVKGTDEFLMKVSEISGQEIPAELTIERGRLVDAMTDSQAWLHGKRVAIYGDPD-LVMALVRFV 386 (526)
T ss_pred HCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCEEEECCCH-HHHHHHHHH
T ss_conf 5277751244524788740778999999985078762788851033025555433434003045405815-899999999
Q ss_pred -CCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCC
Q ss_conf -44237101000277757999988774433112123301520898862267177887623588
Q gi|254780170|r 220 -IISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDK 281 (342)
Q Consensus 220 -~iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~ 281 (342)
-+--||.=+.+.+++.+|..-+. ++..|-.+|=. |.| . ..=+=+.+|-||=+||
T Consensus 387 LElG~ePvHil~~N~~~~f~~~~~----~~LAAS~fG~~-Atv--w-~gKDLWhlRSLlFTep 441 (526)
T TIGR01286 387 LELGIEPVHILATNGTKEFKAEMK----ALLAASPFGQE-ATV--W-AGKDLWHLRSLLFTEP 441 (526)
T ss_pred HHHCCCCEEEEEECCCHHHHHHHH----HHHHCCCCCCC-CEE--C-CCCCHHHHHHHHHCCC
T ss_conf 981897558984188858999999----98602634677-126--3-5630687644530488
No 128
>pfam11432 DUF3197 Protein of unknown function (DUF3197). This bacterial family of proteins has no known function.
Probab=57.60 E-value=13 Score=17.74 Aligned_cols=28 Identities=18% Similarity=0.404 Sum_probs=23.1
Q ss_pred CCCCCCEEEEC-CCCCHHHHHHHHHHHHH
Q ss_conf 44237101000-27775799998877443
Q gi|254780170|r 220 IISKSPLAPAI-IQGDTEWYNIVSWTHYA 247 (342)
Q Consensus 220 ~iskEPlg~av-r~gD~~w~d~V~W~~~a 247 (342)
.++..-+||++ +.||....++|+|..-.
T Consensus 44 ll~~~AFGPafGp~G~~ALaELv~w~~~~ 72 (113)
T pfam11432 44 LLVAPAFGPAYGPGGAEALAELVRWALAQ 72 (113)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 12465557675852789999999999975
No 129
>pfam04076 BOF Bacterial OB fold (BOF) protein. Proteins in this family form an OB-fold. Analysis of the predicted binding site of BOF family proteins implies that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localize in the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesized for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the BOF ligand-binding site may be associated with the presence of BOF proteins in mobile genetic elements and their potential role in bacterial pathogenicity.
Probab=55.88 E-value=16 Score=17.22 Aligned_cols=17 Identities=18% Similarity=-0.179 Sum_probs=9.7
Q ss_pred CHHHHHHHHHHHHHHHH
Q ss_conf 91389999999999998
Q gi|254780170|r 1 MYKDFFVSILCLIILFF 17 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~ 17 (342)
|||..+.++++++....
T Consensus 1 MKK~~i~~~~~l~s~~~ 17 (126)
T pfam04076 1 MKKLAIALASALASTSA 17 (126)
T ss_pred CCHHHHHHHHHHHHCHH
T ss_conf 95689999999984678
No 130
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit; InterPro: IPR004651 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis. This family describes the histidine biosynthesis protein, HisF. ; GO: 0000107 imidazoleglycerol-phosphate synthase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm, 0009382 imidazoleglycerol-phosphate synthase complex.
Probab=55.65 E-value=7 Score=19.56 Aligned_cols=97 Identities=18% Similarity=0.251 Sum_probs=46.7
Q ss_pred CCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHH--------------------HHHHHHHCCCEEE
Q ss_conf 11347536417862034313426999999998629985078747989--------------------9999987396029
Q gi|254780170|r 134 KKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVE--------------------EIDAAYRAHRCDA 193 (342)
Q Consensus 134 ~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~--------------------~a~~al~~Gr~DA 193 (342)
.-||++++|.+|.+|-...-. ..+|++ | +.-|...+.+ +.+..-.--+|=.
T Consensus 95 GGGI~~~eD~~GtkiPaleva------s~~L~a-G--ADKvSiNTaAv~~P~li~e~a~~GdGtsPietiskaFGsQciV 165 (312)
T TIGR00735 95 GGGIKSIEDVKGTKIPALEVA------SKLLRA-G--ADKVSINTAAVKNPELISEAADRGDGTSPIETISKAFGSQCIV 165 (312)
T ss_pred CCCCCCHHHCCCCCCCHHHHH------HHHHHC-C--CCEEEECCHHHHCCHHHHHHHHCCCCCCHHHHHHHCCCCEEEE
T ss_conf 688884320456444278999------999854-8--9846328467508447899873278755156665313851799
Q ss_pred EEECCHHHHHHHH-HCCCC---HHHCC-CCCCCCCCCEEEECCCCCHH-----HHHHHHHHHH
Q ss_conf 9825047999998-36780---01002-56444237101000277757-----9999887744
Q gi|254780170|r 194 YTGDISALYALKL-TNDRP---SEHVI-LPDIISKSPLAPAIIQGDTE-----WYNIVSWTHY 246 (342)
Q Consensus 194 ~~~D~s~La~~~~-~~~~p---~~~~i-l~e~iskEPlg~avr~gD~~-----w~d~V~W~~~ 246 (342)
+.-|. .|. ...+| ++|.+ +++- +--|-..++-|+.. =.|+|.|+-.
T Consensus 166 vaIDa-----kr~~~~~~~~~k~~f~~e~~dG--y~~y~V~~~GGR~~rtr~tg~da~~Wa~~ 221 (312)
T TIGR00735 166 VAIDA-----KRVYVNSNPDEKNEFIVEVEDG--YCWYEVYIYGGRESRTRVTGLDAVEWAKE 221 (312)
T ss_pred EEEEC-----CCCCCCCCCCCCCCEEEECCCC--CEEEEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 75526-----4054455633346507873389--60268998308655541020679999999
No 131
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=55.32 E-value=17 Score=17.16 Aligned_cols=145 Identities=11% Similarity=0.042 Sum_probs=67.1
Q ss_pred CEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCC-CCCC
Q ss_conf 306889898801509999999999679822025998143100267743962799812432532011027843532-2344
Q gi|254780170|r 47 FAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPI-TYFD 125 (342)
Q Consensus 47 fs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~-~~~d 125 (342)
|.+.+.+ -|.+.+..+|..+-.+...+=+.-.++...-..-....+-++++..|- +... .+-=++..| --.+
T Consensus 37 ~~~~na~-----gd~~~l~~ia~~l~~~~~DlIva~gTpaaqa~~~~~~~iPIVF~~V~d-Pv~a-glv~s~~~pg~NvT 109 (281)
T cd06325 37 IDYQNAQ-----GDQSNLPTIARKFVADKPDLIVAIATPAAQAAANATKDIPIVFTAVTD-PVGA-GLVKSLEKPGGNVT 109 (281)
T ss_pred EEEEECC-----CCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCEEEEECCC-HHHC-CCCCCCCCCCCCEE
T ss_conf 9996079-----999999999999985499999987709999999627999989995168-6662-75435678999579
Q ss_pred CEEEEEECCCCCCCHHHH--CCCCEEEEECCC------HHHHHHHHHHHCCCCCCEEEECCHHHHHHHHH--CCCEEEEE
Q ss_conf 023463021134753641--786203431342------69999999986299850787479899999987--39602998
Q gi|254780170|r 126 GQGFIMHKKKGISSVSQL--SGASICVQAGTT------TELTLADYFKAHNMKYHPIVFERVEEIDAAYR--AHRCDAYT 195 (342)
Q Consensus 126 gq~~lVrk~~~i~s~~dL--~G~~I~v~~GTT------~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~--~Gr~DA~~ 195 (342)
|..-.++-...+.-+..+ +-|+|++.-.++ .-..+++..++.|+.+....+.+..|..+++. .+++|++.
T Consensus 110 Gvs~~~~~~~~l~l~~~l~P~~k~igvlyn~~e~ns~~~~~~~~~~a~~~Gi~v~~~~v~~~~ei~~a~~~l~~~~Dal~ 189 (281)
T cd06325 110 GVSDLVPVETQLELLKKLLPDAKTVGVLYNPSEANSVVQVKELKKAAAKLGIEVVEATVSSSNDVQQAAQSLAGKVDAIY 189 (281)
T ss_pred EEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCEEE
T ss_conf 98787478999999998588985899995799865699999999999976988999945988899999997562589999
Q ss_pred ECC
Q ss_conf 250
Q gi|254780170|r 196 GDI 198 (342)
Q Consensus 196 ~D~ 198 (342)
.-.
T Consensus 190 ~~~ 192 (281)
T cd06325 190 VPT 192 (281)
T ss_pred EEC
T ss_conf 918
No 132
>COG4851 CamS Protein involved in sex pheromone biosynthesis [General function prediction only]
Probab=55.27 E-value=11 Score=18.43 Aligned_cols=147 Identities=14% Similarity=0.124 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC-C---EEEEEE------ECCCCCCEEECCCCCEEEEHHHHH------
Q ss_conf 913899999999999984012442168999857-9---499987------178988306889898801509999------
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNASILGDIKKR-G---FLKCGI------NTGLVGFAEVKANGDWKGFDVDFC------ 64 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a~tLd~Vk~r-G---~L~vGv------~~~~ppfs~~d~~G~~~GfDVDl~------ 64 (342)
|+|++.+++.++.++++.|.+.-.++-++|.++ + .-..|+ +.++.-.-.+=..|+-.||-.+-.
T Consensus 1 Mkktl~i~~ta~vliLs~C~~~~dd~edkv~qk~~~sseq~k~Iv~k~nis~n~YktvLpyk~~kaRGl~~~n~~nr~di 80 (382)
T COG4851 1 MKKTLGIAATASVLILSGCFPFVDDTEDKVVQKEGKSSEQEKGIVPKANISENYYKTVLPYKAGKARGLGSANVYNRYDI 80 (382)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCHHHCCCCCCCCCCCCCCHHEEEEECCCCCCCHHHHHHHCCCCH
T ss_conf 94015589999999986116766873002343037703320112135444433132242210244455006655401560
Q ss_pred -------HHHHHHHCCCCCEEEEEECCCCCC---HHHHH--CCCEEEE----EECCCCCCCCHHCCCCCCCCCCCCC--C
Q ss_conf -------999999679822025998143100---26774--3962799----8124325320110278435322344--0
Q gi|254780170|r 65 -------RALSSAIFDDPSKIQYLPLNAKER---FLALQ--SKQIDIL----SRNTDWTLLREISLGLAFRPITYFD--G 126 (342)
Q Consensus 65 -------raiAaal~gd~~kVe~v~~~~~~r---f~aL~--sG~vDil----~~~~T~T~~Rd~~~~v~Fs~~~~~d--g 126 (342)
-.+|+..| ++.+--|..-.+-.+ -.-|. +-+=+=- ..+-+-+.+| . .-+|.|+-. .
T Consensus 81 de~E~GLm~lake~f-~~d~YlfqeGQfldkdtlnswL~rksekn~nGLNP~l~~~~n~eer--~---E~sP~YLs~iLE 154 (382)
T COG4851 81 DELELGLMRLAKEHF-SPDTYLFQEGQFLDKDTLNSWLMRKSEKNPNGLNPPLESGGNMEER--E---EDSPIYLSHILE 154 (382)
T ss_pred HHHHHHHHHHHHHCC-CCCCCEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH--C---CCCCHHHHHHHH
T ss_conf 478888999877407-9431000035301588899884500225877899988899996783--2---357579998875
Q ss_pred EEEEEECCCCCCCHHHHCCCCEEEEECCCH
Q ss_conf 234630211347536417862034313426
Q gi|254780170|r 127 QGFIMHKKKGISSVSQLSGASICVQAGTTT 156 (342)
Q Consensus 127 q~~lVrk~~~i~s~~dL~G~~I~v~~GTT~ 156 (342)
|-++|.+|.+ -..|.|..|+....|..
T Consensus 155 hdyl~~~D~~---~~~lgGi~IgLamNSVy 181 (382)
T COG4851 155 HDYLVEGDKG---EYKLGGIVIGLAMNSVY 181 (382)
T ss_pred HHHHCCCCCC---CEEECCEEEEEEECCEE
T ss_conf 6653046778---52555689997613223
No 133
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=54.76 E-value=17 Score=17.10 Aligned_cols=122 Identities=18% Similarity=0.251 Sum_probs=66.3
Q ss_pred EEEEEECCCCCC----HHHHHCCCEEEEEECCCCCCCC--HHCCCCCCCCCCC--CCCEEEEEE--CC------CC----
Q ss_conf 025998143100----2677439627998124325320--1102784353223--440234630--21------13----
Q gi|254780170|r 77 KIQYLPLNAKER----FLALQSKQIDILSRNTDWTLLR--EISLGLAFRPITY--FDGQGFIMH--KK------KG---- 136 (342)
Q Consensus 77 kVe~v~~~~~~r----f~aL~sG~vDil~~~~T~T~~R--d~~~~v~Fs~~~~--~dgq~~lVr--k~------~~---- 136 (342)
.++.+|+.-+.. ...+.+...|+++.+|.+-+.+ +...+.--..... ..+..+++| |. .|
T Consensus 41 alriVPl~DD~eL~~~t~~lia~ppD~vV~TTGiGfr~wleaAe~~Gl~d~Ll~aL~~ari~aRGPKa~gAlRaaGL~e~ 120 (381)
T PRK07239 41 ALRIVPLADDDELRAATEALIAAPPDIVVATTGIGFRGWVEAADGWGLADELLEALSSARLVARGPKATGALRAAGLREE 120 (381)
T ss_pred CCCEECCCCCHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEEECCCHHHHHHHCCCCCC
T ss_conf 53303388859999999998548999899923688999999999717778999997328078777646878986499864
Q ss_pred -----------CCC--HHHHCCCCEEEEE-CCCHH----HHHHHHHHHCCCCCCEEE-EC--------CHHHHHHHHHCC
Q ss_conf -----------475--3641786203431-34269----999999986299850787-47--------989999998739
Q gi|254780170|r 137 -----------ISS--VSQLSGASICVQA-GTTTE----LTLADYFKAHNMKYHPIV-FE--------RVEEIDAAYRAH 189 (342)
Q Consensus 137 -----------i~s--~~dL~G~~I~v~~-GTT~e----~~l~~~~~~~~~~~~~v~-~~--------~~~~a~~al~~G 189 (342)
+.. -.++.|++|+||- |.|.+ ..+.+.+++.|..+..|. |. ..+..+.+..+|
T Consensus 121 wsp~ses~~Evl~~Ll~~gv~G~rIAVQlHGa~~~~eP~p~~~~~Lr~aGAeV~~V~vYRW~~p~d~~~l~~Lv~~i~~g 200 (381)
T PRK07239 121 WSPASESSAEVLEYLLEEGVAGKRIAVQLHGAADEWDPLPEFLEALRAAGAEVVPVPVYRWVPPPDGGPFDRLVDLIATR 200 (381)
T ss_pred CCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCEEEEECCEECCCCCCCCHHHHHHHHHHHC
T ss_conf 27999877999999971798888899981476666687889999999779868895654326999854799999999708
Q ss_pred CEEEEEECC
Q ss_conf 602998250
Q gi|254780170|r 190 RCDAYTGDI 198 (342)
Q Consensus 190 r~DA~~~D~ 198 (342)
++||++--.
T Consensus 201 ~vDAVtFTS 209 (381)
T PRK07239 201 QLDAVTFTS 209 (381)
T ss_pred CCCEEEECC
T ss_conf 888899657
No 134
>TIGR01054 rgy reverse gyrase; InterPro: IPR005736 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. Reverse gyrase is a type IA topoisomerase that is unique among these enzymes in its requirement for ATP. Reverse gyrase is a hyperthermophile-specific enzyme that acts as a renaturase by positively supercoiling DNA, and by annealing complementary single-strand circles . Hyperthermophilic organisms must protect themselves against heat-induced degradation, and reverse gyrase acts to reduce the rate of double-strand DNA breakage, a function that does not require ATP hydrolysis and which is independent of its positive supercoiling abilities. Reverse gyrase achieves this by recognising nicked DNA and recruiting a protein coat to the site of damage . More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=54.44 E-value=17 Score=17.07 Aligned_cols=140 Identities=16% Similarity=0.178 Sum_probs=82.4
Q ss_pred ECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHH---HHCCCCHHHCCC-CCCCCCCCEE
Q ss_conf 134269999999986299850787479899999987396029982504799999---836780010025-6444237101
Q gi|254780170|r 152 AGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALK---LTNDRPSEHVIL-PDIISKSPLA 227 (342)
Q Consensus 152 ~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~---~~~~~p~~~~il-~e~iskEPlg 227 (342)
-|--..+.++++++.+|++++.+.-....+.++.|..|++|..++=.+ -.+.. ..+|.--.|.|. +-|=.|=|+-
T Consensus 374 yG~e~a~ei~~~L~~~Gv~A~~~~~~k~~~~~~~F~~GE~dVliG~a~-yyg~LVRGLDLP~rvRYAvF~G~Pk~k~~~~ 452 (1843)
T TIGR01054 374 YGKEKAEEIKEFLREHGVKAVAYHAKKPKEDLEKFAEGEIDVLIGVAS-YYGVLVRGLDLPERVRYAVFLGVPKFKVPLK 452 (1843)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHCCCEEEEEEEEC-CCCCEEECCCCCCHHEEEEECCCCCEEEEEE
T ss_conf 255899999999985794799984037732034663485136877101-5476353266610100023438995066412
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCC-HH-HHHHHHHHCCC
Q ss_conf 00027775799998877443311212330152089886226717788762358876503337998-67-99999997186
Q gi|254780170|r 228 PAIIQGDTEWYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLT-KD-WTYRIIRHMGN 305 (342)
Q Consensus 228 ~avr~gD~~w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~-~~-~~~~~i~~vGN 305 (342)
.....----|.= =++-.+|..|| +| + |..+.++++++ .+-..+-|+ -+ .+-+.|..-+.
T Consensus 453 ~~~~~p~~~~~L---LSl~~~~~~e~-~i-----~-----~~~~~~~~~~~-----~L~r~~~ls~~e~~~~~~~~~~~~ 513 (1843)
T TIGR01054 453 VALSSPRRLLAL---LSLLALILKEE-RI-----E-----SLAEKARKLLG-----RLKRYIDLSVIERALEEKLEARRA 513 (1843)
T ss_pred ECCCCHHHHHHH---HHHHHHHHCCC-CH-----H-----HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 037875789999---99999851432-03-----5-----78999999999-----998865444332888999985237
Q ss_pred HHHHHH
Q ss_conf 999878
Q gi|254780170|r 306 YGEMFD 311 (342)
Q Consensus 306 Ygei~~ 311 (342)
+|||=+
T Consensus 514 ~~e~~~ 519 (1843)
T TIGR01054 514 RGEVKE 519 (1843)
T ss_pred CCHHHH
T ss_conf 650220
No 135
>pfam02642 consensus
Probab=54.31 E-value=17 Score=17.05 Aligned_cols=103 Identities=17% Similarity=0.022 Sum_probs=52.1
Q ss_pred HHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC---
Q ss_conf 41786203431342699999999862998507874798999999873960299825047999998367800100256---
Q gi|254780170|r 142 QLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILP--- 218 (342)
Q Consensus 142 dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--- 218 (342)
++++++|+|.---||.-.| ++-...+++++.. ..++...|+.+|++||-+-= .-.|..+++ +-++++.
T Consensus 90 ~l~~~~iAvPG~~TTA~lL---~~l~~~~~~~v~~-~FdeI~~aV~~G~vDaGviI----HE~rftY~~-gL~~~~DLG~ 160 (259)
T pfam02642 90 SLKLKRLATPGEHTTAHLL---CKLYYPDAELVPM-PFDRIIQAVLEGKVDAGALI----HEERFSYHD-GLKVVKDLGD 160 (259)
T ss_pred CCCCCEEECCCHHHHHHHH---HHHHCCCCEEEEE-EHHHHHHHHHCCCCCCEEEE----EHHHHHHHC-CCEEEEEHHH
T ss_conf 7789989787736799999---9985588759995-68998999975998710797----631421403-9878735889
Q ss_pred ----CCCCCCCEEE-ECCCC-CHHHHH-HHHHHHHHHHHHHH
Q ss_conf ----4442371010-00277-757999-98877443311212
Q gi|254780170|r 219 ----DIISKSPLAP-AIIQG-DTEWYN-IVSWTHYAMVTAEE 253 (342)
Q Consensus 219 ----e~iskEPlg~-avr~g-D~~w~d-~V~W~~~ali~Aee 253 (342)
++-.-=|||. ++|+. +.+... +-++.-.++-.|.+
T Consensus 161 wW~~~tglPlPLG~ivirr~Lg~~~~~~~~~~lr~Si~yA~~ 202 (259)
T pfam02642 161 LWKEKVDLPLPLGCNAIRKDVPLEVVILLKRALRESLETALK 202 (259)
T ss_pred HHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 987740998763467866107999999999999999999997
No 136
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=54.09 E-value=9.9 Score=18.59 Aligned_cols=49 Identities=8% Similarity=0.161 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHHHHHHH-----CCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEE
Q ss_conf 9138999999999999840-----12442168999857949998717898830688989880
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTS-----FSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWK 57 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~-----~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~ 57 (342)
|||+++.....+++++++. ........+. +. +....|.|+..|-+|+..
T Consensus 2 mkk~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~--iG~~aP~f~l~~l~G~~v 55 (176)
T PRK03147 2 MKKNRLLFRTIILLILLAAVGYTLYQNFFADKEK------MQ--VGKEAPNFVLTDLEGKKI 55 (176)
T ss_pred CCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCC------CC--CCCCCCCCEEECCCCCEE
T ss_conf 8620439999999999999999986167778752------33--799089716278998987
No 137
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=53.91 E-value=18 Score=17.01 Aligned_cols=46 Identities=17% Similarity=0.310 Sum_probs=32.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCCCEEE--EC----CHHHHHHHHHCCCEEEEEE
Q ss_conf 8620343134269999999986299850787--47----9899999987396029982
Q gi|254780170|r 145 GASICVQAGTTTELTLADYFKAHNMKYHPIV--FE----RVEEIDAAYRAHRCDAYTG 196 (342)
Q Consensus 145 G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~--~~----~~~~a~~al~~Gr~DA~~~ 196 (342)
|=++....|| +++++++|++.+++. .+ +.......+.+|++|.++.
T Consensus 26 Gf~l~AT~GT------a~~l~~~Gi~~~~v~k~~e~~~~~~p~i~d~i~~g~i~lVIN 77 (116)
T cd01423 26 GYKLYATEGT------ADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVIN 77 (116)
T ss_pred CCEEEEEHHH------HHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHCCCEEEEEE
T ss_conf 9999984189------999998699657987862467899966999997698689998
No 138
>COG4134 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=53.70 E-value=18 Score=16.99 Aligned_cols=20 Identities=0% Similarity=-0.311 Sum_probs=16.6
Q ss_pred CHHHHHHHHHCCCEEEEEEC
Q ss_conf 98999999873960299825
Q gi|254780170|r 178 RVEEIDAAYRAHRCDAYTGD 197 (342)
Q Consensus 178 ~~~~a~~al~~Gr~DA~~~D 197 (342)
+..++++.|..|+.+--++-
T Consensus 244 g~Adml~lL~dG~L~l~~t~ 263 (384)
T COG4134 244 GPADMLQLLNDGTLYLTLTF 263 (384)
T ss_pred CHHHHHHHHCCCCEEEEECC
T ss_conf 87899987417847886046
No 139
>PRK03094 hypothetical protein; Provisional
Probab=53.63 E-value=15 Score=17.45 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=28.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEE
Q ss_conf 620343134269999999986299850787479899999987396029982
Q gi|254780170|r 146 ASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTG 196 (342)
Q Consensus 146 ~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~ 196 (342)
+||+|..+=| +++++++++| |+++..++..++ ..|||.+.
T Consensus 2 ~kIaVE~~Ls---~v~~~L~~~G--Y~Vv~l~~~~~a------~~~Da~Vi 41 (80)
T PRK03094 2 AKIGVENSLT---DVQQALKQKG--YEVVTLNSEQDA------QGCDCCVV 41 (80)
T ss_pred CCEEECCCCH---HHHHHHHHCC--CEEEECCCCCCC------CCCCEEEE
T ss_conf 8167326725---9999999779--878966871433------56788999
No 140
>PRK10159 outer membrane phosphoporin protein E; Provisional
Probab=53.50 E-value=7.9 Score=19.21 Aligned_cols=22 Identities=14% Similarity=0.058 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9138999999999999840124
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFST 22 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa 22 (342)
|||+++.+++.+++++.++.|+
T Consensus 1 MKk~~lA~ai~a~l~s~~a~Aa 22 (351)
T PRK10159 1 MKKSTLALVVMGIVASASVQAA 22 (351)
T ss_pred CCHHHHHHHHHHHHHCCCCCEE
T ss_conf 9473899999999872653179
No 141
>PRK10752 sulfate transporter subunit; Provisional
Probab=53.28 E-value=18 Score=16.95 Aligned_cols=183 Identities=12% Similarity=0.084 Sum_probs=81.8
Q ss_pred CCCCCCCCEEEEEECCC--CCCCHHHHCCCCEEEE---ECCC---HHHHHHHHH---HHCCCC------------CCEEE
Q ss_conf 53223440234630211--3475364178620343---1342---699999999---862998------------50787
Q gi|254780170|r 119 RPITYFDGQGFIMHKKK--GISSVSQLSGASICVQ---AGTT---TELTLADYF---KAHNMK------------YHPIV 175 (342)
Q Consensus 119 s~~~~~dgq~~lVrk~~--~i~s~~dL~G~~I~v~---~GTT---~e~~l~~~~---~~~~~~------------~~~v~ 175 (342)
+.| |++-..|+|||+. +|+++.||-..-|-|+ .-|+ --..|+.|- ++.+-+ -++..
T Consensus 109 s~p-ytStivflVRkGNPK~IkdW~DL~k~gV~VItPNPKTSG~aRwn~LAawg~a~~~~gg~e~~a~~fv~~l~~NV~v 187 (329)
T PRK10752 109 SAP-YTSTIVFLVRKGNPKQIHDWNDLIKPGVSVITPNPKSSGGARWNYLAAWGYALHHNNNDQAKAQDFVKALYKNVEV 187 (329)
T ss_pred CCC-EEEEEEEEECCCCCCCCCCHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
T ss_conf 965-2237999971899566877467464897897689988731779999999999972499999999999999836852
Q ss_pred ECC-HHHHHHHH-HCCCEEEEEECCHHHHHHHHHCCCCHHH-CCCCC-CCCCCCEEEECCCCCHH--HHHHHHHHHHHHH
Q ss_conf 479-89999998-7396029982504799999836780010-02564-44237101000277757--9999887744331
Q gi|254780170|r 176 FER-VEEIDAAY-RAHRCDAYTGDISALYALKLTNDRPSEH-VILPD-IISKSPLAPAIIQGDTE--WYNIVSWTHYAMV 249 (342)
Q Consensus 176 ~~~-~~~a~~al-~~Gr~DA~~~D~s~La~~~~~~~~p~~~-~il~e-~iskEPlg~avr~gD~~--w~d~V~W~~~ali 249 (342)
+++ .-++...| +.|.-|++.+=-.........+. ++.+ +|.|. .|.-||--.+|.+.-+. =+.+..--+.=|.
T Consensus 188 ld~gaR~AT~tF~~rg~GDVLlt~ENEa~l~~~~~g-~~~~eiV~P~~silae~pVAvVd~~vdk~GTr~~A~ayl~fLy 266 (329)
T PRK10752 188 LDSGARGSTNTFVERGIGDVLIAWENEALLAANELG-KDKFEIVTPSESILAEPTVSVVDKVVEKKGTREVAEAYLKYLY 266 (329)
T ss_pred CCCCCHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCC-CCCCEEECCCCCEECCCCEEEEECCCCCCCCHHHHHHHHHHHC
T ss_conf 589734677899864867557634379999998608-9986287899635515975998344566688999999999865
Q ss_pred HHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHCCCHHHHHHHHCCCC
Q ss_conf 12123301520898862267177887623588765033379986799999997186999878864888
Q gi|254780170|r 250 TAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYRIIRHMGNYGEMFDRNLGNQ 317 (342)
Q Consensus 250 ~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~~i~~vGNYgei~~rnlg~~ 317 (342)
.-|..-| ..+.---..||+|..=.- ..+ ++-=...|-..-|...++-.+||.++
T Consensus 267 s~eaQ~i----~Ak~~yRP~~~~v~~~~~--------~~F--P~i~l~ti~~~fGgW~~~q~~~F~dG 320 (329)
T PRK10752 267 SPEGQEI----AAKNYYRPRDAEVAKKYE--------NAF--PKLKLFTIDEEFGGWTKAQKEHFANG 320 (329)
T ss_pred CHHHHHH----HHHHCCCCCCHHHHHHHH--------CCC--CCCCEEEEECCCCCHHHHHHHHCCCC
T ss_conf 9799999----998088989978988765--------439--98514763324389899999970489
No 142
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=53.28 E-value=18 Score=16.95 Aligned_cols=122 Identities=11% Similarity=0.127 Sum_probs=67.2
Q ss_pred HHHHCCCCCEEEEEEC-CCCCCHHHHHCCCEEEEEECCCCCCCC------HHCC--CCC-CCCCCCCCCEEEEEECCCCC
Q ss_conf 9996798220259981-431002677439627998124325320------1102--784-35322344023463021134
Q gi|254780170|r 68 SSAIFDDPSKIQYLPL-NAKERFLALQSKQIDILSRNTDWTLLR------EISL--GLA-FRPITYFDGQGFIMHKKKGI 137 (342)
Q Consensus 68 Aaal~gd~~kVe~v~~-~~~~rf~aL~sG~vDil~~~~T~T~~R------d~~~--~v~-Fs~~~~~dgq~~lVrk~~~i 137 (342)
|...+++. +++.|. +..+.|.++.+|++|..+=..--|.+= |... .+. +...+.--.+.+|++..
T Consensus 19 a~~~f~~~--~~~~p~~ti~evf~ave~g~aD~gVVPIENS~eG~V~~tlDlL~~~~l~IvgE~~lpI~h~L~~~~~--- 93 (279)
T COG0077 19 ARKLFGSG--AELLPCSTIEDVFKAVENGEADYGVVPIENSIEGSVNETLDLLAETDLQIVGEIVLPIHHCLLVKGG--- 93 (279)
T ss_pred HHHHCCCC--CEECCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCEEEEEEEEEEEEEEEECCC---
T ss_conf 99861035--4012479999999999769986699976603884038878754359868999999877999981688---
Q ss_pred CCHHHHCC-CCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHC---CCEEEEEECCH
Q ss_conf 75364178-6203431342699999999862998507874798999999873---96029982504
Q gi|254780170|r 138 SSVSQLSG-ASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRA---HRCDAYTGDIS 199 (342)
Q Consensus 138 ~s~~dL~G-~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~---Gr~DA~~~D~s 199 (342)
.+|+. ++|-...-.- ..-.+|++++.+.++++...+..++.+.+.. ..+-|+.+..+
T Consensus 94 ---~~l~~Ik~vySHpqal--aQc~~~L~~~~p~~~~~~~~STa~Aak~v~~~~~~~~AAIas~~a 154 (279)
T COG0077 94 ---VDLEEIKTVYSHPQAL--AQCRKFLRAHLPGVEIEYTSSTAEAAKLVAEGPDETVAAIASELA 154 (279)
T ss_pred ---CCHHHCEEEEECCHHH--HHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCCEEEECCHHH
T ss_conf ---8866575887472899--999999997288836998178899999997289867368769878
No 143
>PRK00031 lolA outer-membrane lipoprotein carrier protein; Reviewed
Probab=53.24 E-value=14 Score=17.60 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 9138999999999999840124421
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNAS 25 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a~ 25 (342)
|||.++++++++.++++.+.|...+
T Consensus 1 mk~~~~~~~~~~~l~~~~~~A~~~~ 25 (201)
T PRK00031 1 MKKLLIAALLAAALVASSAFADAAS 25 (201)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 9159999999999877664502899
No 144
>PRK10002 outer membrane protein F; Provisional
Probab=53.21 E-value=8.6 Score=18.98 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=12.9
Q ss_pred CHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9138999999999999840124
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFST 22 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa 22 (342)
|||++|.+++.+++++.++.|+
T Consensus 2 MKK~~LA~ai~all~ag~a~AA 23 (362)
T PRK10002 2 MKRNILAVIVPALLVAGTANAA 23 (362)
T ss_pred CHHHHHHHHHHHHHHHCCCCEE
T ss_conf 3087999999999860644178
No 145
>PRK03757 hypothetical protein; Provisional
Probab=53.08 E-value=10 Score=18.48 Aligned_cols=22 Identities=18% Similarity=0.066 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9138999999999999840124
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFST 22 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa 22 (342)
|||.++.++++++++..++..+
T Consensus 1 mkk~~l~~~l~a~~~~~~~A~a 22 (191)
T PRK03757 1 MKKTLLGLTLGSLLFSAGSAVA 22 (191)
T ss_pred CCHHHHHHHHHHHHHHCCCCCC
T ss_conf 9043999999999863040457
No 146
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=52.71 E-value=18 Score=16.89 Aligned_cols=203 Identities=16% Similarity=0.193 Sum_probs=106.3
Q ss_pred HHHHHCCCCCEEEEEE-CCCCCCHHHHHCCCEEEEEECCCCCCCCHH------CCCCCCCC----C-------CCCCCEE
Q ss_conf 9999679822025998-143100267743962799812432532011------02784353----2-------2344023
Q gi|254780170|r 67 LSSAIFDDPSKIQYLP-LNAKERFLALQSKQIDILSRNTDWTLLREI------SLGLAFRP----I-------TYFDGQG 128 (342)
Q Consensus 67 iAaal~gd~~kVe~v~-~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~------~~~v~Fs~----~-------~~~dgq~ 128 (342)
.+++.+|-+ .+-|+| ..+..|..++.+--.+|+.-+-++....+. ..+.-|.. + +...||+
T Consensus 113 ~~A~~~G~~-a~I~mp~~~~~~k~~~i~~~GAeVi~~~~~yd~a~~~A~~~A~~~g~~lV~Dts~~gY~~iP~~Vm~Gy~ 191 (379)
T PRK08206 113 WAAQQLGQK-AVIYMPKGSSEERVEAIRALGAECIRTDGNYDDSVRLAAQEAQENGWVVVQDTAWEGYEEIPTWIMQGYG 191 (379)
T ss_pred HHHHHCCCC-EEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 999983997-8999179999999999996599899968868999999999999759889735887664447698885199
Q ss_pred EEEECCCCCCCHHHHCC--C---CEEEEEC--CCHHHHHHHHHH----HCCCCCCEEEECCHHHHHHHHHCCCEEEEEEC
Q ss_conf 46302113475364178--6---2034313--426999999998----62998507874798999999873960299825
Q gi|254780170|r 129 FIMHKKKGISSVSQLSG--A---SICVQAG--TTTELTLADYFK----AHNMKYHPIVFERVEEIDAAYRAHRCDAYTGD 197 (342)
Q Consensus 129 ~lVrk~~~i~s~~dL~G--~---~I~v~~G--TT~e~~l~~~~~----~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D 197 (342)
.+.. .-.++|.. . -|-++.| +-... +..+++ ...+++..|.=+..+..++.+.+|+.-.+..+
T Consensus 192 Ti~~-----Ei~eQl~~~~~~pthV~~~~GvGglaag-v~~~~~~~~~~~~p~ii~VEP~~A~c~~~S~~~G~~v~v~~~ 265 (379)
T PRK08206 192 TMAD-----EAVEQLKEGGEPPTHVFLQAGVGGLAAA-VLGYLAEVYGEQRPHFIVVEPDQADCLYQSARDGKPVAVTGD 265 (379)
T ss_pred HHHH-----HHHHHHHHCCCCCCEEEEECCCCHHHHH-HHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCEECCCC
T ss_conf 9999-----9999755217888779990580369999-999999974678976999677757699999985996671686
Q ss_pred -CHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHH-----HHHHHHHHHCCH-HHHHHHHHCCCC
Q ss_conf -0479999983678001002564442371010002777579999887744-----331121233015-208988622671
Q gi|254780170|r 198 -ISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHY-----AMVTAEELGITQ-KNINQVSKDTTN 270 (342)
Q Consensus 198 -~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~-----ali~Aee~git~-~nv~~~~~~s~~ 270 (342)
.++..++.-..+.+-.|.||... ..-.|.=.|.+=.+.+|+-.+ .-|.|||.|-.. +-+...+.+...
T Consensus 266 ~~TimdGL~cg~ps~~aw~iL~~~-----~d~~vtVsD~~i~~Amr~La~~~~~d~~IvagpsGAaglAaL~~~~~~~~~ 340 (379)
T PRK08206 266 MDTIMAGLACGEPNPLAWEILRNC-----ADAFISCDDEVAALGMRILANPLGGDPPIVSGESGAVGLGLLYALMSDPDY 340 (379)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHH-----CCEEEEECHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCH
T ss_conf 123003345698774789999975-----996999767999999999856657899746616548999999999848314
Q ss_pred HHHHHHHCCCC
Q ss_conf 77887623588
Q gi|254780170|r 271 PDVQRFLGIDK 281 (342)
Q Consensus 271 p~i~r~lg~~~ 281 (342)
.+.++-||+++
T Consensus 341 ~~~~~~lgl~~ 351 (379)
T PRK08206 341 QELREKLGLDE 351 (379)
T ss_pred HHHHHHCCCCC
T ss_conf 89999769798
No 147
>pfam00405 Transferrin Transferrin.
Probab=52.70 E-value=18 Score=16.89 Aligned_cols=160 Identities=13% Similarity=0.142 Sum_probs=81.7
Q ss_pred HHHHHHHHHHCCCC-CEEEEEE-CCCCCCHHHHHCCCEEEEEEC--CCCCCCCHHCCCC--C---------CCCCCCCCC
Q ss_conf 99999999967982-2025998-143100267743962799812--4325320110278--4---------353223440
Q gi|254780170|r 62 DFCRALSSAIFDDP-SKIQYLP-LNAKERFLALQSKQIDILSRN--TDWTLLREISLGL--A---------FRPITYFDG 126 (342)
Q Consensus 62 Dl~raiAaal~gd~-~kVe~v~-~~~~~rf~aL~sG~vDil~~~--~T~T~~Rd~~~~v--~---------Fs~~~~~dg 126 (342)
.=|++++++.-.+. -.++-+. .+..+-+.+++.|+.|++.-. --++..|. .+++ - -....||
T Consensus 12 ~KC~~l~~a~~~~~~p~i~Cv~~~s~~~C~~~I~~~~AD~~~ldgg~vy~Ag~~-~y~L~Pi~~E~y~~~~~~~~~Y~-- 88 (328)
T pfam00405 12 KKCGSLRDNMKKVGGPSLSCVKKSSYLECIQAIAENEADAITLDGGLVYEAGLA-PYKLKPVAAEVYGSKEEPQTHYY-- 88 (328)
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCCCEEEECHHHHHHHHCC-CCCCEEEEEECCCCCCCCCCEEE--
T ss_conf 999999999864379865875189999999999769998898686999986446-58986689751257788985489--
Q ss_pred EEEEEECCCCCCCHHHHCCCCEEEE-ECCCH----------------------HHHHHHHHHHCCCC-C-----------
Q ss_conf 2346302113475364178620343-13426----------------------99999999862998-5-----------
Q gi|254780170|r 127 QGFIMHKKKGISSVSQLSGASICVQ-AGTTT----------------------ELTLADYFKAHNMK-Y----------- 171 (342)
Q Consensus 127 q~~lVrk~~~i~s~~dL~G~~I~v~-~GTT~----------------------e~~l~~~~~~~~~~-~----------- 171 (342)
...+|||++.+ ++.+|.||+-|-. -|.|. +..+.+||.+.=.+ .
T Consensus 89 aVAVVkk~s~~-~~~~LrGkkSCHtg~g~taGw~iPig~l~~~~~~~~~~~~~~~avs~FF~~SCvPGa~~~~~~~LC~l 167 (328)
T pfam00405 89 AVAVVKKGSNF-QLNQLQGKKSCHTGLGRSAGWNIPIGLLRPQLPWAIPREPLEKAVSKFFSASCVPGADEGAFPKLCQL 167 (328)
T ss_pred EEEEEECCCCC-CHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf 99999768876-67561798631367787433011289873126757899858899998606246689899878524654
Q ss_pred ------------CEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCC
Q ss_conf ------------078747989999998739602998250479999983678001002564442371
Q gi|254780170|r 172 ------------HPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSP 225 (342)
Q Consensus 172 ------------~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEP 225 (342)
..-.|-.+.-|++=|..|.=|.-+...+.+...-....++++|.+|=.-=++.|
T Consensus 168 C~G~~~~~C~~~~~e~Y~Gy~GAfrCL~eg~GDVAFvkh~tV~en~~~~~~~~dyeLLC~dGtr~~ 233 (328)
T pfam00405 168 CAGDGENKCACSNNEPYFGYSGAFKCLKDGAGDVAFVKHSTVFENLPDKADRDQYELLCPDNTRKP 233 (328)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCHHHHCCCCCCHHHHHHCCCCCCCCC
T ss_conf 789986767899877665740099865318975698705436653678877344521688989677
No 148
>PRK01326 prsA foldase protein PrsA; Reviewed
Probab=52.60 E-value=14 Score=17.62 Aligned_cols=46 Identities=11% Similarity=0.111 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHCCCCC--CEEEECCHHHH---HHHHHC-CCEEEEEECCHHHHHHHH
Q ss_conf 26999999998629985--07874798999---999873-960299825047999998
Q gi|254780170|r 155 TTELTLADYFKAHNMKY--HPIVFERVEEI---DAAYRA-HRCDAYTGDISALYALKL 206 (342)
Q Consensus 155 T~e~~l~~~~~~~~~~~--~~v~~~~~~~a---~~al~~-Gr~DA~~~D~s~La~~~~ 206 (342)
.++..+..++....+.+ ..+.+++.++| ...|.+ | .|-..||-...
T Consensus 130 iTd~~lK~~y~~y~p~v~a~hIlv~~e~~Ak~vi~~l~a~G------~dFa~lAKe~S 181 (310)
T PRK01326 130 LTDEEYKKAYESYTPEVTVQIITLDNEDKAKSVLEEAKAEG------ADFAQIAKEKT 181 (310)
T ss_pred CCHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHCCC------CCHHHHHHHCC
T ss_conf 78899999997349853789987256888999999986378------74899986525
No 149
>pfam03698 UPF0180 Uncharacterized protein family (UPF0180). The members of this family are small uncharacterized proteins.
Probab=51.42 E-value=17 Score=17.08 Aligned_cols=40 Identities=18% Similarity=0.396 Sum_probs=28.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEEEE
Q ss_conf 620343134269999999986299850787479899999987396029982
Q gi|254780170|r 146 ASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAYTG 196 (342)
Q Consensus 146 ~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~ 196 (342)
+||+|..+=| +++++++++| |+++..++..++ ..|||.+.
T Consensus 2 ~kIaVE~~Ls---~v~e~L~~~G--y~Vv~l~~~~~~------~~~da~Vi 41 (80)
T pfam03698 2 KKIAVEQSLS---NIEEALKEKG--YEVVRLKNEQDA------QGCDACVV 41 (80)
T ss_pred CCEEECCCCH---HHHHHHHHCC--CEEEECCCCCCC------CCCCEEEE
T ss_conf 8266326725---9999999779--878867870325------66588999
No 150
>PRK09706 transcriptional repressor DicA; Reviewed
Probab=51.33 E-value=11 Score=18.33 Aligned_cols=12 Identities=25% Similarity=0.700 Sum_probs=6.3
Q ss_pred CCCHHHHHHHHC
Q ss_conf 186999878864
Q gi|254780170|r 303 MGNYGEMFDRNL 314 (342)
Q Consensus 303 vGNYgei~~rnl 314 (342)
+=||-++|+.-|
T Consensus 115 ~~~~~~l~~Ell 126 (135)
T PRK09706 115 VENFNKLFEELL 126 (135)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 151
>PRK10554 outer membrane porin protein C; Provisional
Probab=50.68 E-value=9.4 Score=18.74 Aligned_cols=22 Identities=5% Similarity=0.010 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9138999999999999840124
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFST 22 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa 22 (342)
|||++|.+++.+++++.++.|+
T Consensus 1 MKk~~LA~~i~all~ag~a~AA 22 (373)
T PRK10554 1 MKVKVLSLLVPALLVAGAANAA 22 (373)
T ss_pred CCHHHHHHHHHHHHHHCCCCEE
T ss_conf 9540899999999860753179
No 152
>PRK00830 consensus
Probab=49.93 E-value=20 Score=16.62 Aligned_cols=12 Identities=8% Similarity=0.188 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q ss_conf 099999999996
Q gi|254780170|r 60 DVDFCRALSSAI 71 (342)
Q Consensus 60 DVDl~raiAaal 71 (342)
+.++.+.+++..
T Consensus 66 ~~~~I~~i~~~~ 77 (273)
T PRK00830 66 MIDVIERTAEEV 77 (273)
T ss_pred HHHHHHHHHHHC
T ss_conf 799999999866
No 153
>COG0687 PotD Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism]
Probab=49.78 E-value=20 Score=16.60 Aligned_cols=209 Identities=15% Similarity=0.119 Sum_probs=101.8
Q ss_pred CEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCC-CCCHHHHHCCC--EEEEEECCCCCCCC
Q ss_conf 9499987178988306889898801509999999999679822025998143-10026774396--27998124325320
Q gi|254780170|r 34 GFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNA-KERFLALQSKQ--IDILSRNTDWTLLR 110 (342)
Q Consensus 34 G~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~-~~rf~aL~sG~--vDil~~~~T~T~~R 110 (342)
.+|++-.-.+|-+ +. +.+...++.+ .+|.+...++ ......+..|. +|++.-+..+- .|
T Consensus 32 ~~l~v~~w~gy~~-----~~---------~~~~F~k~tG---i~V~~~~~~sne~~~ak~~~g~~~~Dvv~~s~~~~-~~ 93 (363)
T COG0687 32 KTLNVYNWGGYID-----PA---------LLKPFEKETG---IKVVYDTFDSNEEMLAKLKAGGGGYDVVVPSGYFV-AR 93 (363)
T ss_pred CEEEEECCCCCCC-----HH---------HHHHHHHHHC---CEEEEECCCCHHHHHHHHHHCCCCCCEEECCHHHH-HH
T ss_conf 8599964787557-----78---------8998999989---97999538986999999980899988797188899-99
Q ss_pred H-----------------------------HCCCCCCCCCCCCCCEEEEEECCC-----CCCCHHHHC---------CCC
Q ss_conf 1-----------------------------102784353223440234630211-----347536417---------862
Q gi|254780170|r 111 E-----------------------------ISLGLAFRPITYFDGQGFIMHKKK-----GISSVSQLS---------GAS 147 (342)
Q Consensus 111 d-----------------------------~~~~v~Fs~~~~~dgq~~lVrk~~-----~i~s~~dL~---------G~~ 147 (342)
- ...+-.++.||++-..+|..+++. ..+|+++|= |+.
T Consensus 94 ~~~~gll~~lD~skl~n~~~l~~~~~~~~~~d~g~~y~vPy~~g~t~i~Yn~~~~~~~~~~~sW~~l~d~~~~~~~k~~~ 173 (363)
T COG0687 94 LIKEGLLQPLDKSKLPNWKNLDPEFLNPPKFDPGNKYSVPYFWGTTGIAYNTDKVKDAPPPTSWADLFDPEKFPGLKGKG 173 (363)
T ss_pred HHHCCCCCCCCHHHCCCHHHCCHHHHCCCCCCCCCEECEEEEEEEEEEEEECCCCCCCCCCCCHHHHHCCHHHHHHCCCC
T ss_conf 98667567589666648211698783577678888603167886469999800058999998899983842002232575
Q ss_pred EEEE---------------EC--CCHHHHHHHHHHHCCCCCC--EEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHC
Q ss_conf 0343---------------13--4269999999986299850--787479899999987396029982504799999836
Q gi|254780170|r 148 ICVQ---------------AG--TTTELTLADYFKAHNMKYH--PIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTN 208 (342)
Q Consensus 148 I~v~---------------~G--TT~e~~l~~~~~~~~~~~~--~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~ 208 (342)
+.+. .+ ++.+..+...+..-. +.+ .+.+.+..+..+.|.+|+++....=.......+...
T Consensus 174 ~~~~d~~~~~~~~al~~lg~~~n~~~~~~~~~a~~~L~-~~kp~~~~~~~~~~~~~~l~~Gev~~a~~w~g~~~~~~~~~ 252 (363)
T COG0687 174 VALLDDDREVFGAALALLGKSPNTTDPEDLKKAFDLLD-KLKPVNVYWFDGSQYVQLLANGEVVLAMGWSGDAAAAKAAK 252 (363)
T ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH-HHCCCEEEEECCHHHHHHHHCCCEEEEEEECHHHHHHHHCC
T ss_conf 30136605789999997189978899889999999999-72785089963627888986699789997777899986255
Q ss_pred CCCHHHCCCCC-CCCCCCEEEECCCCCHHHHHHHHHHHH------HHHHHHHHHCCHHHH
Q ss_conf 78001002564-442371010002777579999887744------331121233015208
Q gi|254780170|r 209 DRPSEHVILPD-IISKSPLAPAIIQGDTEWYNIVSWTHY------AMVTAEELGITQKNI 261 (342)
Q Consensus 209 ~~p~~~~il~e-~iskEPlg~avr~gD~~w~d~V~W~~~------ali~Aee~git~~nv 261 (342)
..+.-..+.|+ .-.-=.-..++++|=+.=-..-.|.-| +-..++..|-...|.
T Consensus 253 ~~~~i~~~~p~eG~~~w~D~~~ipk~a~n~~~A~~fInf~~~pe~~a~~~~~~~y~~~n~ 312 (363)
T COG0687 253 NGAPIEFVIPKEGSILWFDNLAIPKGAKNVDAAYKFINFLLDPEVAAKLAEFVGYAPPNK 312 (363)
T ss_pred CCCEEEEECCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCH
T ss_conf 898057734788734787889987999998999999998519899999987326788887
No 154
>pfam11588 DUF3243 Protein of unknown function (DUF3243). This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=49.51 E-value=6.7 Score=19.66 Aligned_cols=54 Identities=22% Similarity=0.521 Sum_probs=36.0
Q ss_pred HHHHHCCCCCCCCHHHCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHHCC
Q ss_conf 8876235887650333799867999999971869998788648889998875576034289
Q gi|254780170|r 273 VQRFLGIDKSSNIGEALGLTKDWTYRIIRHMGNYGEMFDRNLGNQSELKIPRGYNALWSKG 333 (342)
Q Consensus 273 i~r~lg~~~~~~~g~~lgl~~~~~~~~i~~vGNYgei~~rnlg~~s~l~~~r~~N~lw~~g 333 (342)
=+.|||- --+.++.+|++.+-..++..+||+| ...|+-|.. .-+|-+-.||..|
T Consensus 10 wK~~Lg~--rv~~a~~~Gm~ee~i~~~A~~iGdy---LA~~vdP~N--~eerlLkELW~va 63 (81)
T pfam11588 10 WKDFLGD--RVNLAKKIGMSEETISKLAYRIGDY---LAKNVDPQN--REERLLKELWDVA 63 (81)
T ss_pred HHHHHHH--HHHHHHHCCCCHHHHHHHHHHHHHH---HHHCCCCCC--HHHHHHHHHHHHC
T ss_conf 9999999--9999998599889999999999999---986279998--7999999999767
No 155
>COG4143 TbpA ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism]
Probab=49.48 E-value=21 Score=16.57 Aligned_cols=177 Identities=15% Similarity=0.124 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 91389999999999998401244216899985794999871789883068898988015099999999996798220259
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQY 80 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~ 80 (342)
|++.+...++++++++.+.| +.+.+ -+|+|++...+. - +| |---.+.+++-++-. .+|+|
T Consensus 1 m~~~l~~~~~~all~~~~~~-a~~~t-------~~LtVytydSF~-----~---ew-g~Gp~vk~~FE~~~~---~~v~f 60 (336)
T COG4143 1 MRRLLRALIGLALLVSAALG-AQAAT-------PTLTVYTYDSFA-----S---EW-GPGPKVKKAFEAEYG---CKVNF 60 (336)
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHHCC-------CEEEEEEEEEEE-----C---CC-CCCHHHHHHHHHHHC---CEEEE
T ss_conf 90249999999999998657-76348-------538999976342-----2---56-885789999999859---52899
Q ss_pred EECCCC-CCHHHHH----CCCEEEEEECCCCCCCCHHCCCC------C--------------CCCCCCCCCEEEEEECC-
Q ss_conf 981431-0026774----39627998124325320110278------4--------------35322344023463021-
Q gi|254780170|r 81 LPLNAK-ERFLALQ----SKQIDILSRNTDWTLLREISLGL------A--------------FRPITYFDGQGFIMHKK- 134 (342)
Q Consensus 81 v~~~~~-~rf~aL~----sG~vDil~~~~T~T~~Rd~~~~v------~--------------Fs~~~~~dgq~~lVrk~- 134 (342)
|+.... +.|.-|. +=+.|++.+--+..++|..+.++ + |.-||=|.--+|+-.++
T Consensus 61 V~~~d~v~llnRl~leg~~~~ADvvvGldn~~l~~A~~~~lf~~~~~d~~~~~vp~~~~~d~f~~P~DyGy~a~vYd~~~ 140 (336)
T COG4143 61 VALGDGVELLNRLILEGKNPKADVVVGLDNNLLARARETGLFAPYGVDASDVPVPEGWKIDTFALPYDYGYFAFVYDKTK 140 (336)
T ss_pred EECCCHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHH
T ss_conf 97075899999999707898885899347277888885587666789855788876535675101245412899976577
Q ss_pred --CCCCCHHHHCC----CCEEEEE--CCCHHHHH-------------HHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEE
Q ss_conf --13475364178----6203431--34269999-------------999986299850787479899999987396029
Q gi|254780170|r 135 --KGISSVSQLSG----ASICVQA--GTTTELTL-------------ADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDA 193 (342)
Q Consensus 135 --~~i~s~~dL~G----~~I~v~~--GTT~e~~l-------------~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA 193 (342)
..-+|++||-. .+|.++. -|+.-..+ -+|.++-.-+ .+....+..+++-+|..|+.+.
T Consensus 141 ~~~ppksL~dL~~~~y~~~ii~qdPrtSspGl~fLlW~~svyg~d~~~~~W~kL~~~-~v~v~~gWSeaY~aFt~GEap~ 219 (336)
T COG4143 141 LKNPPKSLKDLVEPEYAGKIIYQDPRTSSPGLGFLLWTISVYGEDGAPEAWAKLADN-GVTVTKGWSEAYGAFTKGEAPL 219 (336)
T ss_pred HCCCCCCHHHHCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHC-CEEECCCHHHHHHHHHCCCCCE
T ss_conf 528762689863851269578069887884078899998763623189999999858-8686586798898874786557
Q ss_pred EEECC
Q ss_conf 98250
Q gi|254780170|r 194 YTGDI 198 (342)
Q Consensus 194 ~~~D~ 198 (342)
+.+=.
T Consensus 220 VLSYt 224 (336)
T COG4143 220 VLSYT 224 (336)
T ss_pred EEEEC
T ss_conf 99860
No 156
>COG4690 PepD Dipeptidase [Amino acid transport and metabolism]
Probab=49.15 E-value=5.1 Score=20.41 Aligned_cols=12 Identities=25% Similarity=0.432 Sum_probs=7.0
Q ss_pred CCEEECCCCCEE
Q ss_conf 830688989880
Q gi|254780170|r 46 GFAEVKANGDWK 57 (342)
Q Consensus 46 pfs~~d~~G~~~ 57 (342)
++.|.|+++-|.
T Consensus 149 gvafaD~deiW~ 160 (464)
T COG4690 149 GVAFADKDEIWV 160 (464)
T ss_pred EEEEECCCCEEE
T ss_conf 268865886489
No 157
>TIGR00971 3a0106s03 sulfate ABC transporter, sulfate-binding protein; InterPro: IPR005669 Thiosulphate-binding proteins (gene cysP) specifically binds thiosulphate and are involved in the transport systems for this nutrients , . There are two conserved regions in the protein, one located in the N-terminal region and the other in the central part of these proteins. The second pattern includes two adjacent amino acids (Ser-Gly) that, in sbp, are known to be essential for sulphate binding . ; GO: 0015419 sulfate transmembrane-transporting ATPase activity, 0008272 sulfate transport, 0030288 outer membrane-bounded periplasmic space.
Probab=49.05 E-value=21 Score=16.53 Aligned_cols=182 Identities=14% Similarity=0.130 Sum_probs=83.4
Q ss_pred CCCCCCCCCEEEEEECCC--CCCCHHHHC--CCCEEEE----ECCCHHHHHHHHHHHCCCC----C-----------CEE
Q ss_conf 353223440234630211--347536417--8620343----1342699999999862998----5-----------078
Q gi|254780170|r 118 FRPITYFDGQGFIMHKKK--GISSVSQLS--GASICVQ----AGTTTELTLADYFKAHNMK----Y-----------HPI 174 (342)
Q Consensus 118 Fs~~~~~dgq~~lVrk~~--~i~s~~dL~--G~~I~v~----~GTT~e~~l~~~~~~~~~~----~-----------~~v 174 (342)
=|.| ||+..+|||||+. .|+++.||= |.+|... .|..--.+|+.|=.+..-+ . ++-
T Consensus 102 NS~P-y~ST~~FLVRKGNPK~I~DWnDL~~~~v~~I~PNPK~SG~AR~~YLaAWG~A~~~~~~D~aK~~~F~~~l~KNvE 180 (320)
T TIGR00971 102 NSAP-YTSTIVFLVRKGNPKQIHDWNDLIKPGVSVITPNPKSSGGARYNYLAAWGYALHADNGDKAKAEQFVKALLKNVE 180 (320)
T ss_pred CCCC-CCEEEEEEEECCCCCCCCCHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCEE
T ss_conf 7886-201335567547989646513463358758607889864157899998766751378762458999999850103
Q ss_pred EECCHH--HHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCC-CCCCCCE-EE---ECCCCCHHHHHHHHHHHHH
Q ss_conf 747989--999998739602998250479999983678001002564-4423710-10---0027775799998877443
Q gi|254780170|r 175 VFERVE--EIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPD-IISKSPL-AP---AIIQGDTEWYNIVSWTHYA 247 (342)
Q Consensus 175 ~~~~~~--~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e-~iskEPl-g~---avr~gD~~w~d~V~W~~~a 247 (342)
.||+-. ..-.-.+-|=-|.+++=-+...-.+..+....--++.|. .|=-||- +. .|.+.|.+ .+..--++=
T Consensus 181 VlD~G~RGaT~TF~ERG~GDVLI~~E~E~~~~~~~~~~~~FE~V~P~~~ILAE~~V~~VDK~V~~~~T~--~~A~AYL~y 258 (320)
T TIGR00971 181 VLDSGARGATNTFVERGLGDVLIAFENEALLIRKELEKDKFEIVIPSESILAEPTVSVVDKVVEKKGTK--KVAEAYLKY 258 (320)
T ss_pred EEECCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCEEEEECCCCCCCHH--HHHHHHHHH
T ss_conf 320688865210111063300134578899999963348726864774321356503574330323458--999999974
Q ss_pred HHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHCCCHHHHHHHHCCC
Q ss_conf 311212330152089886226717788762358876503337998679999999718699987886488
Q gi|254780170|r 248 MVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYRIIRHMGNYGEMFDRNLGN 316 (342)
Q Consensus 248 li~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~~i~~vGNYgei~~rnlg~ 316 (342)
|---|..-|-..|. .-..||+|..=+--+ -.-..| .+|=..-|-..|+--.||-.
T Consensus 259 LYSP~~Q~I~~~~y----YR~~~~~v~~K~~~~---FP~~~L-------F~~~~~FG~W~~~~K~HF~~ 313 (320)
T TIGR00971 259 LYSPEGQEIIAKNY----YRVRDAEVAKKYEDK---FPKLKL-------FTIDEKFGGWPKAQKEHFAN 313 (320)
T ss_pred HCCCCHHHHHHHCC----CCCCCHHHHHHHHCC---CCCCEE-------EEEECCCCCCHHHHHHHHCC
T ss_conf 04941356765426----788888898677516---886023-------46723547825566543027
No 158
>PRK10693 response regulator of RpoS; Provisional
Probab=48.86 E-value=21 Score=16.51 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCC----CCCHHHHHCCCEEEEEECC
Q ss_conf 9999999999679822025998143----1002677439627998124
Q gi|254780170|r 61 VDFCRALSSAIFDDPSKIQYLPLNA----KERFLALQSKQIDILSRNT 104 (342)
Q Consensus 61 VDl~raiAaal~gd~~kVe~v~~~~----~~rf~aL~sG~vDil~~~~ 104 (342)
+|+|+.+-+ .. ..+.++-++. .++..++..|--|.+.-..
T Consensus 67 lell~~lr~-~~---~~~PVIvlTa~~~~~d~v~al~~GA~DyL~KPI 110 (337)
T PRK10693 67 LKFVEHLRN-RG---DQTPVLVISATENMADIAKALRLGVEDVLLKPV 110 (337)
T ss_pred HHHHHHHHH-HC---CCCEEEEEECCCCHHHHHHHHHCCCCEEEECCC
T ss_conf 999999998-58---996499998689999999999749958997896
No 159
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=47.96 E-value=22 Score=16.43 Aligned_cols=83 Identities=16% Similarity=0.201 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 91389999999999998401244216899985794999871789883068898988015099999999996798220259
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQY 80 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~ 80 (342)
||.|-++.+++++++++++.+.+. .+++|+.-..- .+-.|. -+-+-.+.-|++++. ++.+
T Consensus 1 mk~k~~~~~~~~~~~~~~~~a~a~----------~~~IGv~~~~~------~~~~~~-~~~~~~~~~Ake~G~---~v~v 60 (330)
T PRK10355 1 MKIKNILLTLCAALLLTSVAAHAK----------EVKIGMAIDDL------RLERWQ-KDRDIFVKKAESLGA---KVFV 60 (330)
T ss_pred CCHHHHHHHHHHHHHHHCCHHHHC----------CCEEEEEECCC------CCHHHH-HHHHHHHHHHHHCCC---EEEE
T ss_conf 966899999999999844611213----------86799990688------886899-999999999997599---8999
Q ss_pred EECCCC-----CCHHHHHCCCEEEEEEC
Q ss_conf 981431-----00267743962799812
Q gi|254780170|r 81 LPLNAK-----ERFLALQSKQIDILSRN 103 (342)
Q Consensus 81 v~~~~~-----~rf~aL~sG~vDil~~~ 103 (342)
..-..+ +-+..+.+..+|+++-+
T Consensus 61 ~dA~~D~~~Qi~qIe~~I~qgvdaIiv~ 88 (330)
T PRK10355 61 QSANGNEETQMSQIENMINRGVDVLVII 88 (330)
T ss_pred ECCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 7189998999999999998599999996
No 160
>PRK12450 foldase protein PrsA; Reviewed
Probab=47.96 E-value=15 Score=17.49 Aligned_cols=24 Identities=8% Similarity=0.049 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 913899999999999984012442
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNA 24 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a 24 (342)
|+|.++.++.++.++++++|+..+
T Consensus 4 mKK~~~~~~~~~svl~LaAC~s~~ 27 (309)
T PRK12450 4 MNKLITGVVTLATVVTLSACQSSH 27 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999999999999998605899
No 161
>pfam06535 RGM_N Repulsive guidance molecule (RGM) N-terminus. This family consists of the N-terminal region of several mammalian and one bird sequence from Gallus gallus (Chicken). All of the mammalian proteins are hypothetical and have no known function but one member from chicken is annotated as being a repulsive guidance molecule (RGM). RGM is a GPI-linked axon guidance molecule of the retinotectal system. RGM is repulsive for a subset of axons, those from the temporal half of the retina. Temporal retinal axons invade the anterior optic tectum in a superficial layer, and encounter RGM expressed in a gradient with increasing concentration along the anterior-posterior axis. Temporal axons are able to receive posterior-dependent information by sensing gradients or concentrations of guidance cues. Thus, RGM is likely to provide positional information for temporal axons invading the optic tectum in the stratum opticum.
Probab=47.15 E-value=22 Score=16.35 Aligned_cols=35 Identities=31% Similarity=0.560 Sum_probs=21.3
Q ss_pred CEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHH
Q ss_conf 949998717898830688989880150999999999
Q gi|254780170|r 34 GFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSS 69 (342)
Q Consensus 34 G~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAa 69 (342)
..++|-.+--.. .+-....+...|+|.|+|+|+-+
T Consensus 31 ~IlkCn~~fva~-T~~~~~~~~~~~~~~~fC~ALR~ 65 (207)
T pfam06535 31 KILKCNSDFVAA-TSSVHGGGSKDGPETEFCKALRS 65 (207)
T ss_pred EEEEECHHHHHH-CCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 168704356431-37556787777752589999999
No 162
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=46.78 E-value=19 Score=16.87 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 9138999999999999840124421
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNAS 25 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a~ 25 (342)
|||.++..+ ++.++++++|+..++
T Consensus 1 MKK~~la~~-~~svl~LaaC~~~~~ 24 (287)
T PRK03095 1 MKKAMLALA-ATSVIALSACGTSSS 24 (287)
T ss_pred CCHHHHHHH-HHHHHHHHHCCCCCC
T ss_conf 907899999-999999985168998
No 163
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=45.78 E-value=24 Score=16.21 Aligned_cols=153 Identities=9% Similarity=0.057 Sum_probs=75.5
Q ss_pred CCHHHHHHHHCCEEEEEEECCCCCCEEECCCCC-----EEEEHHHHHHHHHHHHCCCCCEEEEEECCC------CCCHHH
Q ss_conf 421689998579499987178988306889898-----801509999999999679822025998143------100267
Q gi|254780170|r 23 NASILGDIKKRGFLKCGINTGLVGFAEVKANGD-----WKGFDVDFCRALSSAIFDDPSKIQYLPLNA------KERFLA 91 (342)
Q Consensus 23 ~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~-----~~GfDVDl~raiAaal~gd~~kVe~v~~~~------~~rf~a 91 (342)
+....++.+++|+..+---...| +|. -.|-..+.-+.+. +.+ ++++..|= ......
T Consensus 42 N~~vv~~L~~~Gv~~v~~~~~v~-------~~~~ViirAHGi~~~~~~~~~-~~g-----~~viDaTCP~V~k~~~~v~~ 108 (304)
T PRK01045 42 NKYVVERLKKKGAIFVEELDEVP-------DGAIVIFSAHGVSPAVREEAK-ERG-----LTVIDATCPLVTKVHKEVAR 108 (304)
T ss_pred CHHHHHHHHHCCCEEECCCCCCC-------CCCEEEEECCCCCHHHHHHHH-HCC-----CCEEECCCCCHHHHHHHHHH
T ss_conf 98999999988699961556689-------999899977899899999999-659-----97770508305899999999
Q ss_pred HHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHH----HHHHHHHHC
Q ss_conf 7439627998124325320110278435322344023463021134753641786203431342699----999999862
Q gi|254780170|r 92 LQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTEL----TLADYFKAH 167 (342)
Q Consensus 92 L~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~----~l~~~~~~~ 167 (342)
+...-..+++-+-.--+|=... ..+ ..+..++|.....+..+...+.+++++..-||.-. .+.++++.+
T Consensus 109 ~~~~Gy~iviiG~~~HpEv~gi--~g~-----~~~~~~vv~~~~d~~~l~~~~~~ki~vvsQTT~~~~~~~~i~~~l~~~ 181 (304)
T PRK01045 109 MSREGYEIILIGHKGHPEVEGT--MGQ-----APDGVYLVESPEDVAKLDVKDPDKLALVTQTTLSVDDTAEIIAALKAR 181 (304)
T ss_pred HHHCCCEEEEECCCCCHHHHHH--HHH-----CCCCEEEECCHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9858988999817898899969--975-----799739988699997577689971899972556599999999999976
Q ss_pred CCCCCEEEECC-------HHHHHHHHHCCCEEEEEE
Q ss_conf 99850787479-------899999987396029982
Q gi|254780170|r 168 NMKYHPIVFER-------VEEIDAAYRAHRCDAYTG 196 (342)
Q Consensus 168 ~~~~~~v~~~~-------~~~a~~al~~Gr~DA~~~ 196 (342)
........|++ .+++...|. ++||+++-
T Consensus 182 ~~~~~~~~~nTIC~aT~~RQ~a~~~La-~~vD~miV 216 (304)
T PRK01045 182 FPEIRGPRKDDICYATQNRQEAVKELA-KQVDLVIV 216 (304)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHH-HCCCEEEE
T ss_conf 836525732352077899999999877-41888999
No 164
>PHA01976 helix-turn-helix protein
Probab=45.19 E-value=16 Score=17.25 Aligned_cols=52 Identities=25% Similarity=0.525 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHH
Q ss_conf 999887744331121233015208988622671778876235887650333799867999
Q gi|254780170|r 238 YNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTY 297 (342)
Q Consensus 238 ~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~ 297 (342)
+.--+|+-.- .|+-+||+++.|.........|++..+. -+...+|.+-||-.
T Consensus 11 R~~~g~sQ~e--LA~~lGVs~~~is~wE~g~~~P~~d~L~------~la~~~~VS~D~Ll 62 (67)
T PHA01976 11 RNARAWSAPE--LSRRAGVRHSLIYDFEADKRLPNLKTLL------RLADALGVTLDWLC 62 (67)
T ss_pred HHHCCCCHHH--HHHHHCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHHHH
T ss_conf 9986999999--9999499899999998789899989999------99999797899992
No 165
>PRK10837 putative DNA-binding transcriptional regulator; Provisional
Probab=44.86 E-value=24 Score=16.12 Aligned_cols=179 Identities=12% Similarity=0.030 Sum_probs=99.3
Q ss_pred CCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHH
Q ss_conf 79499987178988306889898801509999999999679822025998143100267743962799812432532011
Q gi|254780170|r 33 RGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREI 112 (342)
Q Consensus 33 rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~ 112 (342)
+|.|++|+...+..+ +=.++...+.+. . ....+++...+..+.+..|.+|++|+.+.... ..+
T Consensus 88 ~g~l~i~~~~~~~~~-----------~l~~~l~~f~~~-~-P~v~l~l~~~~~~~~~~~l~~~~~D~~i~~~~---~~~- 150 (291)
T PRK10837 88 NGAIRIYASSTIGNY-----------ILPAMIARYRHD-Y-PQLPLELSVGNSQDVIQAVLDFRVDIGLIEGP---CHS- 150 (291)
T ss_pred CCEEEEEEEHHHHHH-----------HHHHHHHHHHHH-C-CCCEEEEEECCHHHHHHHHHHCCCCEEEECCC---CCC-
T ss_conf 862999961799999-----------999999999964-8-99359999888899999998088416674178---899-
Q ss_pred CCCCCCCCCCCCCCEEEEEECCC----CCCCHHHHCCCC-EEEEECCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHHHH
Q ss_conf 02784353223440234630211----347536417862-034313426999999998629985078-747989999998
Q gi|254780170|r 113 SLGLAFRPITYFDGQGFIMHKKK----GISSVSQLSGAS-ICVQAGTTTELTLADYFKAHNMKYHPI-VFERVEEIDAAY 186 (342)
Q Consensus 113 ~~~v~Fs~~~~~dgq~~lVrk~~----~i~s~~dL~G~~-I~v~~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~~al 186 (342)
..+. +.+.+.+...+++..+. +--+++||.... |....|+.....+..++...+.+.+++ .+++.+.....+
T Consensus 151 -~~l~-~~~l~~~~~~~v~~p~~~l~~~~i~~~~l~~~~~i~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v 228 (291)
T PRK10837 151 -TEII-SEPWLEDELVVFAAPDSPLARGPVTLEQLAAAPWILRERGSGTREIVDYLLLSHLPRFEMAMELGNSEAIKHAV 228 (291)
T ss_pred -CCEE-EEEEECCCEEEEECCCCHHHCCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHH
T ss_conf -8718-99944141899987886653799998998079879944998689999999985488653013129799999999
Q ss_pred HCCCEEEEEECCHHHHHHHHHCCCCHHHCCC--CCCCCCCCEEEECCCCCH
Q ss_conf 7396029982504799999836780010025--644423710100027775
Q gi|254780170|r 187 RAHRCDAYTGDISALYALKLTNDRPSEHVIL--PDIISKSPLAPAIIQGDT 235 (342)
Q Consensus 187 ~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il--~e~iskEPlg~avr~gD~ 235 (342)
.+|--=++..+.. +... ... +..+.+ +..-...++..+.|++-.
T Consensus 229 ~~G~Gia~lp~~~--v~~~--l~~-g~L~~l~~~~~~~~~~~~lv~~k~~~ 274 (291)
T PRK10837 229 RHGLGISCLSRRV--IADQ--LQA-GTLVEVAVPLPRLMRTLWRIHHRQKH 274 (291)
T ss_pred HHCCCEEECCHHH--HHHH--HHC-CCEEEEECCCCCCCCEEEEEEECCCC
T ss_conf 9599189724999--9999--878-99799707888861279999989786
No 166
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=44.35 E-value=25 Score=16.07 Aligned_cols=67 Identities=12% Similarity=0.072 Sum_probs=45.5
Q ss_pred HHHHHHCCEEEEEE-ECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEE
Q ss_conf 89998579499987-17898830688989880150999999999967982202599814310026774396279981
Q gi|254780170|r 27 LGDIKKRGFLKCGI-NTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSR 102 (342)
Q Consensus 27 Ld~Vk~rG~L~vGv-~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~ 102 (342)
+|--.....|.+++ +.|-+ -.+ .|=.+++.+.+...+..+ .++.|+.++.++--..|.+|++.+.+-
T Consensus 35 wdPy~~~~~lpvAVVN~D~g-~~~-------~g~~~~~G~~lv~~L~~~-~~~~w~~vs~~~A~~gl~~G~yy~~i~ 102 (164)
T TIGR03061 35 WDPYGNLDNLPVAVVNEDKG-ATY-------DGKTLNAGDDLVKELKKN-DDLDWHFVSAKEAEKGLADGKYYMVIT 102 (164)
T ss_pred CCCCCCCCCCEEEEEECCCC-CCC-------CCCCCCHHHHHHHHHHCC-CCCEEEECCHHHHHHHHHCCCEEEEEE
T ss_conf 68755657871899977878-650-------881522899999987338-886179848999998886495699999
No 167
>PRK07060 short chain dehydrogenase; Provisional
Probab=44.24 E-value=25 Score=16.06 Aligned_cols=14 Identities=14% Similarity=0.050 Sum_probs=7.9
Q ss_pred CCCEEEEEECCCCC
Q ss_conf 39627998124325
Q gi|254780170|r 94 SKQIDILSRNTDWT 107 (342)
Q Consensus 94 sG~vDil~~~~T~T 107 (342)
-|++|+++.+..++
T Consensus 75 ~g~iDilVnnAG~~ 88 (245)
T PRK07060 75 AGAFDGLVNCAGIA 88 (245)
T ss_pred CCCCCEEEECCCCC
T ss_conf 59998999898879
No 168
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=44.08 E-value=18 Score=17.00 Aligned_cols=15 Identities=13% Similarity=0.164 Sum_probs=9.4
Q ss_pred CEEEEHHHHHHHHHH
Q ss_conf 880150999999999
Q gi|254780170|r 55 DWKGFDVDFCRALSS 69 (342)
Q Consensus 55 ~~~GfDVDl~raiAa 69 (342)
+..|=-|++++.-..
T Consensus 27 rd~GDpVelA~~Y~e 41 (256)
T COG0107 27 RDAGDPVELAKRYNE 41 (256)
T ss_pred HHCCCHHHHHHHHHH
T ss_conf 314894999999977
No 169
>PRK09967 putative outer membrane lipoprotein; Provisional
Probab=43.53 E-value=24 Score=16.18 Aligned_cols=21 Identities=10% Similarity=0.290 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9138999999999999840124
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFST 22 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa 22 (342)
|+|+++..++.+.+++. +|++
T Consensus 1 m~k~~~~~~l~~~l~ls-gC~s 21 (160)
T PRK09967 1 MIKHLVAPLIFTSLILT-GCQS 21 (160)
T ss_pred CHHHHHHHHHHHHHHHH-HCCC
T ss_conf 90789999999999998-4589
No 170
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=42.10 E-value=27 Score=15.86 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=29.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCCCEEE--ECCHHHHHHHHHCCCEEEEEE
Q ss_conf 8620343134269999999986299850787--479899999987396029982
Q gi|254780170|r 145 GASICVQAGTTTELTLADYFKAHNMKYHPIV--FERVEEIDAAYRAHRCDAYTG 196 (342)
Q Consensus 145 G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~--~~~~~~a~~al~~Gr~DA~~~ 196 (342)
|=+|....|| .+|++++|+..+.+. .+..+.....+.+|++|.++.
T Consensus 26 Gf~i~AT~GT------a~~L~~~Gi~~~~v~k~~e~~p~i~d~i~~~~i~lVIN 73 (110)
T cd01424 26 GFKLVATEGT------AKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVIN 73 (110)
T ss_pred CCEEEECCHH------HHHHHHCCCCCEEEECCCCCCCCHHHHHHCCCEEEEEE
T ss_conf 9999987169------99998649864033005679976899997793589997
No 171
>pfam08085 Entericidin Entericidin EcnA/B family. This family consists of the entericidin antidote/toxin peptides. The entericidin locus is activated in stationary phase under high osmolarity conditions by rho-S and simultaneously repressed by the osmoregulatory EnvZ/OmpR signal transduction pathway. The entericidin locus encodes tandem paralogous genes (ecnAB) and directs the synthesis of two small cell-envelope lipoproteins which can maintain plasmids in bacterial population by means of post-segregational killing.
Probab=41.26 E-value=25 Score=16.09 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHHH-HHHHCCCCCHHHHHHHHCC
Q ss_conf 913899999999999-9840124421689998579
Q gi|254780170|r 1 MYKDFFVSILCLIIL-FFTSFSTNASILGDIKKRG 34 (342)
Q Consensus 1 M~K~~l~~~l~l~~~-~~~~~aa~a~tLd~Vk~rG 34 (342)
|||.+...+++++++ .+++|-.-...=++|++-|
T Consensus 1 Mk~~~~~~~~l~~~~~~lagCNTv~G~G~Diq~aG 35 (42)
T pfam08085 1 MKKLIALLLALLLLALVLAGCNTVAGAGKDIQSAG 35 (42)
T ss_pred CHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHH
T ss_conf 92369999999999999861222111216389887
No 172
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=40.93 E-value=28 Score=15.74 Aligned_cols=58 Identities=24% Similarity=0.263 Sum_probs=38.5
Q ss_pred HHHHCCCCEEEEECCCHHH-----------------HHHHHHHHCCC---------------CCCEEEECCHHHHHHHHH
Q ss_conf 3641786203431342699-----------------99999986299---------------850787479899999987
Q gi|254780170|r 140 VSQLSGASICVQAGTTTEL-----------------TLADYFKAHNM---------------KYHPIVFERVEEIDAAYR 187 (342)
Q Consensus 140 ~~dL~G~~I~v~~GTT~e~-----------------~l~~~~~~~~~---------------~~~~v~~~~~~~a~~al~ 187 (342)
-.+|.|++|-|..|-|.|. .|++.+..+|. .++.+.+++.+|++.++.
T Consensus 181 ~~~l~gkkvLITaG~T~E~IDpVR~IsN~SSGkmG~aiA~~a~~~GA~VtlI~g~~~~~~p~~v~~i~v~ta~eM~~~v~ 260 (392)
T PRK05579 181 PKDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNLPTPAGVKRIDVESAQEMLDAVL 260 (392)
T ss_pred CCCCCCCEEEEECCCCEEEECCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEECCHHHHHHHHH
T ss_conf 77767887999747724776762476657865899999999996799799996478778999967999675999999999
Q ss_pred C--CCEEEEEEC
Q ss_conf 3--960299825
Q gi|254780170|r 188 A--HRCDAYTGD 197 (342)
Q Consensus 188 ~--Gr~DA~~~D 197 (342)
. ..||+++.-
T Consensus 261 ~~~~~~D~~I~a 272 (392)
T PRK05579 261 AAAQKADIFIMA 272 (392)
T ss_pred HHCCCCCEEEEE
T ss_conf 735447899993
No 173
>PRK01659 consensus
Probab=38.02 E-value=31 Score=15.46 Aligned_cols=20 Identities=10% Similarity=0.214 Sum_probs=9.9
Q ss_pred CCHHHHHHHHHCCCEEEEEE
Q ss_conf 79899999987396029982
Q gi|254780170|r 177 ERVEEIDAAYRAHRCDAYTG 196 (342)
Q Consensus 177 ~~~~~a~~al~~Gr~DA~~~ 196 (342)
.+.++...++..+.++|++.
T Consensus 207 ~~~~di~~l~~~~~v~gv~~ 226 (252)
T PRK01659 207 GNADHMVEVFQKTTADAALA 226 (252)
T ss_pred CCHHHHHHHHHHCCCCEEEE
T ss_conf 99999999997489826557
No 174
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase; InterPro: IPR011283 This entry represent acetoacetyl-CoA reductase, a member of the family short-chain-alcohol dehydrogenases. Note that, despite the precision implied by the enzyme name, the reaction of 1.1.1.36 from EC is defined more generally as (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. ; GO: 0018454 acetoacetyl-CoA reductase activity, 0042619 poly-hydroxybutyrate biosynthetic process, 0005737 cytoplasm.
Probab=37.99 E-value=19 Score=16.85 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=14.8
Q ss_pred CCCEEEEEECCCCCCCCHH
Q ss_conf 3962799812432532011
Q gi|254780170|r 94 SKQIDILSRNTDWTLLREI 112 (342)
Q Consensus 94 sG~vDil~~~~T~T~~Rd~ 112 (342)
-|.||||+.|.-|| ||+
T Consensus 77 lGpvDvLVNNAGIT--RD~ 93 (244)
T TIGR01829 77 LGPVDVLVNNAGIT--RDK 93 (244)
T ss_pred CCCEEEEEECCCCC--CCH
T ss_conf 19536898688644--030
No 175
>PRK09620 hypothetical protein; Provisional
Probab=37.90 E-value=31 Score=15.44 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=25.4
Q ss_pred HHHHHHHHHHCCCCCCEEEE--CC-------HHHHHHHHHCCCEEEEEECC
Q ss_conf 99999999862998507874--79-------89999998739602998250
Q gi|254780170|r 157 ELTLADYFKAHNMKYHPIVF--ER-------VEEIDAAYRAHRCDAYTGDI 198 (342)
Q Consensus 157 e~~l~~~~~~~~~~~~~v~~--~~-------~~~a~~al~~Gr~DA~~~D~ 198 (342)
...|.. .+....+-.+|-| ++ .+.+...+...+||.++.-.
T Consensus 133 pdIl~~-i~~~~~~~~lVGFkaEt~~~~e~Li~~A~~kl~~k~~D~ivAN~ 182 (229)
T PRK09620 133 PKVLKQ-IKQWDPETVLVGFKLESDVNEEELFERAKNRMEEAKASVMIANS 182 (229)
T ss_pred HHHHHH-HHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 799999-87238998699998378896789999999999976999999848
No 176
>PRK11627 hypothetical protein; Provisional
Probab=37.51 E-value=32 Score=15.41 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=12.0
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 913899999999999984012442
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNA 24 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a 24 (342)
|.||+++.++++++++ +|++..
T Consensus 1 ~mkk~~~~l~a~~lL~--gCas~p 22 (192)
T PRK11627 1 MLKKILFPLVALFMLA--GCATPP 22 (192)
T ss_pred CHHHHHHHHHHHHHHH--HHCCCC
T ss_conf 9287999999999998--606997
No 177
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=37.28 E-value=32 Score=15.38 Aligned_cols=48 Identities=15% Similarity=0.220 Sum_probs=30.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCCC-EE--EECCHHHHHHHHHCCCEEEEEECC
Q ss_conf 8620343134269999999986299850-78--747989999998739602998250
Q gi|254780170|r 145 GASICVQAGTTTELTLADYFKAHNMKYH-PI--VFERVEEIDAAYRAHRCDAYTGDI 198 (342)
Q Consensus 145 G~~I~v~~GTT~e~~l~~~~~~~~~~~~-~v--~~~~~~~a~~al~~Gr~DA~~~D~ 198 (342)
|-++....|| +.+++++|++.+ ++ ..++.......+.+|++|.++...
T Consensus 13 Gf~l~AT~GT------a~~L~~~Gi~v~~l~~ki~~g~~~i~~~i~~~~IdlVInt~ 63 (90)
T smart00851 13 GFELVATGGT------AKFLREAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTL 63 (90)
T ss_pred CCEEEECCHH------HHHHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEEEEEC
T ss_conf 9989981258------99999759971043024435610489981978879999846
No 178
>PRK10808 outer membrane protein A; Reviewed
Probab=37.02 E-value=30 Score=15.57 Aligned_cols=23 Identities=13% Similarity=-0.006 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 91389999999999998401244
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTN 23 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~ 23 (342)
|||.++..+++++.+...+.++.
T Consensus 1 MKKt~ial~va~a~~a~~A~Aa~ 23 (347)
T PRK10808 1 MKKTAIAIAVALAGFATVAQAAP 23 (347)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 94679999999997776431200
No 179
>pfam06510 DUF1102 Protein of unknown function (DUF1102). This family consists of several hypothetical archaeal proteins of unknown function.
Probab=36.71 E-value=32 Score=15.33 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=5.9
Q ss_pred CCEEECCCCC
Q ss_conf 8306889898
Q gi|254780170|r 46 GFAEVKANGD 55 (342)
Q Consensus 46 pfs~~d~~G~ 55 (342)
|+.|.+.+|+
T Consensus 52 PY~yi~~~Gk 61 (183)
T pfam06510 52 PYVYLNNNGK 61 (183)
T ss_pred CEEEECCCCE
T ss_conf 4589847984
No 180
>PRK10329 glutaredoxin-like protein; Provisional
Probab=36.21 E-value=33 Score=15.28 Aligned_cols=39 Identities=21% Similarity=0.386 Sum_probs=21.7
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHH
Q ss_conf 16899985794999871789883068898988015099999999996
Q gi|254780170|r 25 SILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAI 71 (342)
Q Consensus 25 ~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal 71 (342)
..++.+++.|+-. .|.-..++ ..|.||..|..++++++.
T Consensus 38 ea~~~vk~~G~~q-------~PVV~~~~-~~wsGFRPD~i~~L~~a~ 76 (81)
T PRK10329 38 EAADTLRAQGFRQ-------LPVVIAGD-LSWSGFRPDMINRLHPAP 76 (81)
T ss_pred HHHHHHHHCCCCC-------CCEEEECC-CEECCCCHHHHHHHHHHH
T ss_conf 9999999769855-------99899699-544360989999888878
No 181
>KOG1759 consensus
Probab=35.66 E-value=34 Score=15.22 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=24.3
Q ss_pred CCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 9898801509999999999679822025998143100
Q gi|254780170|r 52 ANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKER 88 (342)
Q Consensus 52 ~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~r 88 (342)
.++...||..|+|.++|+.++...++| +|.+....|
T Consensus 12 ~~~V~~~fe~elt~~lAkimgkP~~~i-~V~l~~~~~ 47 (115)
T KOG1759 12 VDKVPDGFEKELTKALAKIMGKPEDYI-MVELAGGVR 47 (115)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHHE-EEEECCCCE
T ss_conf 566783399999999999957975658-999648945
No 182
>PRK04281 consensus
Probab=35.36 E-value=34 Score=15.19 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=7.5
Q ss_pred CHHHHHHHHHCCCEEEEEE
Q ss_conf 9899999987396029982
Q gi|254780170|r 178 RVEEIDAAYRAHRCDAYTG 196 (342)
Q Consensus 178 ~~~~a~~al~~Gr~DA~~~ 196 (342)
+.++...++..|.+||+..
T Consensus 209 ~~~di~~~~~~~~~~~v~~ 227 (254)
T PRK04281 209 NVRHLIEGITEGKADAVLA 227 (254)
T ss_pred CHHHHHHHHHHCCCCEEEE
T ss_conf 9999999998089888976
No 183
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=35.28 E-value=22 Score=16.44 Aligned_cols=43 Identities=19% Similarity=0.339 Sum_probs=19.5
Q ss_pred EEEEECCC--CCCCHHHHCCC-CEEEE------ECCCH-HHHHHHHHHHCCCC
Q ss_conf 34630211--34753641786-20343------13426-99999999862998
Q gi|254780170|r 128 GFIMHKKK--GISSVSQLSGA-SICVQ------AGTTT-ELTLADYFKAHNMK 170 (342)
Q Consensus 128 ~~lVrk~~--~i~s~~dL~G~-~I~v~------~GTT~-e~~l~~~~~~~~~~ 170 (342)
|+++|.+- ..-++.-|+|. -++|. .||.. ...|.+|.++++++
T Consensus 140 GVL~R~GHTEAaVDLarLAGl~P~gVicEI~n~DGtMaR~~~L~~FA~~h~L~ 192 (552)
T PRK09319 140 GVLKRAGHTEAAVDLARLAGLYPAGVICEIQNPDGSMARLPQLKEYARQWGLK 192 (552)
T ss_pred CEEECCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCC
T ss_conf 88244786189999999749997189999977998652489999999985996
No 184
>TIGR01916 F420_puta_dedox F420-dependent oxidoreductase, putative; InterPro: IPR008225 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function..
Probab=34.79 E-value=31 Score=15.47 Aligned_cols=119 Identities=15% Similarity=0.166 Sum_probs=70.0
Q ss_pred HHHHHHHH------HCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH----HCCCCCCCCCCCCCCEEEEEE
Q ss_conf 99999999------67982202599814310026774396279981243253201----102784353223440234630
Q gi|254780170|r 63 FCRALSSA------IFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE----ISLGLAFRPITYFDGQGFIMH 132 (342)
Q Consensus 63 l~raiAaa------l~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd----~~~~v~Fs~~~~~dgq~~lVr 132 (342)
-++.||++ .+.||.-++-+.-.+.+.+ ..-..+=+|..|. ..-+||=|.+ +.|..++-|
T Consensus 65 ~A~eiA~RladvtGtGKDp~~~~ail~Ea~ev~---------~~~~~F~itetr~G~VcaNAGvD~SN~--~~G~~llLP 133 (260)
T TIGR01916 65 EAKEIAARLADVTGTGKDPRFVQAILEEAEEVV---------RVGKPFLITETRHGLVCANAGVDESNV--EEGELLLLP 133 (260)
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEEE---------EECCCEEEEEECCCCEEEEECCCCCCC--CCCEEECCC
T ss_conf 899999987530568986898898776240666---------327973698326663677505571124--785673589
Q ss_pred CCC-----CC-CCHHHHCCCCEEEEE-----------------CCCHHHHHHHHHHHC-----CCCCCEEEECCHHHHHH
Q ss_conf 211-----34-753641786203431-----------------342699999999862-----99850787479899999
Q gi|254780170|r 133 KKK-----GI-SSVSQLSGASICVQA-----------------GTTTELTLADYFKAH-----NMKYHPIVFERVEEIDA 184 (342)
Q Consensus 133 k~~-----~i-~s~~dL~G~~I~v~~-----------------GTT~e~~l~~~~~~~-----~~~~~~v~~~~~~~a~~ 184 (342)
+|- +| +.+.+|-|++|+|+- |-..-..|.||.-.+ .+.+|.+..-+.=.+.+
T Consensus 134 ~dPD~SA~~ir~~L~el~G~~VgVIITDT~GRpFR~G~vGvAiG~aG~~~l~D~~G~~DlyGreL~~T~vAvADELAaaA 213 (260)
T TIGR01916 134 EDPDASAEKIRRGLRELLGKDVGVIITDTNGRPFREGQVGVAIGAAGVKALKDWRGEKDLYGRELEVTVVAVADELAAAA 213 (260)
T ss_pred CCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCEEEEEECCCHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHHH
T ss_conf 88378999999999986398478999718888401687437881004047873278959888822122221034788643
Q ss_pred HHHCCCEE
Q ss_conf 98739602
Q gi|254780170|r 185 AYRAHRCD 192 (342)
Q Consensus 185 al~~Gr~D 192 (342)
.|..|+.|
T Consensus 214 nLVmGead 221 (260)
T TIGR01916 214 NLVMGEAD 221 (260)
T ss_pred HHHCCCCC
T ss_conf 12123037
No 185
>PRK11622 putative ABC transporter solute-binding protein; Provisional
Probab=34.71 E-value=35 Score=15.13 Aligned_cols=32 Identities=13% Similarity=-0.017 Sum_probs=23.5
Q ss_pred EE-CCHHHHHHHHHCCCEEEEEECCHHHHHHHH
Q ss_conf 74-798999999873960299825047999998
Q gi|254780170|r 175 VF-ERVEEIDAAYRAHRCDAYTGDISALYALKL 206 (342)
Q Consensus 175 ~~-~~~~~a~~al~~Gr~DA~~~D~s~La~~~~ 206 (342)
.| .+..+..+.|.+|++|..++-.+.-+....
T Consensus 249 ~yP~~~~~l~~L~adGEi~~~~sfnp~~a~~~I 281 (401)
T PRK11622 249 TFPASPAELDQLLADGELDLAFTFNPNEAQAAI 281 (401)
T ss_pred CCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf 268999999999847987788403877788898
No 186
>pfam07091 FmrO Ribosomal RNA methyltransferase (FmrO). This family consists of several bacterial ribosomal RNA methyltransferase (aminoglycoside-resistance methyltransferase) proteins.
Probab=34.62 E-value=35 Score=15.12 Aligned_cols=129 Identities=16% Similarity=0.249 Sum_probs=55.3
Q ss_pred EEEEEECCCCCCEEECCCCCEEEEHHH--HHHHHHHHH--CCCCCEEEEEECCCCCCHHHHHCCCEEEEEE-CCCCCCCC
Q ss_conf 999871789883068898988015099--999999996--7982202599814310026774396279981-24325320
Q gi|254780170|r 36 LKCGINTGLVGFAEVKANGDWKGFDVD--FCRALSSAI--FDDPSKIQYLPLNAKERFLALQSKQIDILSR-NTDWTLLR 110 (342)
Q Consensus 36 L~vGv~~~~ppfs~~d~~G~~~GfDVD--l~raiAaal--~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~-~~T~T~~R 110 (342)
|-||.++=.-||--..++=.+.|+||| +|..+.+.+ ++-+..++...+ ....-...+|+..- -+-..+++
T Consensus 109 laCGlNPLa~pwm~~~~~~~Y~a~DId~~~i~fi~~~l~~l~v~~~~~~~Dl-----~~~~p~~~~DvaLllK~lp~LE~ 183 (248)
T pfam07091 109 LACGLNPLAVPWMPLAPDATYHAYDIDRALIEFIRAFLALLGVPGEVRVRDL-----LTDPPAEPADVALLLKTLPLLEQ 183 (248)
T ss_pred ECCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEE-----CCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 0026883014233689986799970777899999999986298763798761-----04799887340047552778988
Q ss_pred H-HCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 1-1027843532234402346302113475364178620343134269999999986299850787479
Q gi|254780170|r 111 E-ISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFER 178 (342)
Q Consensus 111 d-~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~ 178 (342)
. ...+.++... .+.+-++| +- -.+.|+|+..+..+ ++..+++...+.++..++-+.|.+
T Consensus 184 q~~G~g~~ll~~--l~~~~vVV--SF---PtrsLgGR~kGm~~--~y~~~fe~~~~~r~~~~~~~~~~n 243 (248)
T pfam07091 184 QRRGAGLDLLDA--LNAPHVVV--SF---PTRSLGGRSKGMEA--TYSAWFEALVAGRGWIVDRLEFGN 243 (248)
T ss_pred HCCCCHHHHHHH--HCCCEEEE--EC---CCCCCCCCCCCCCC--CHHHHHHHHCCCCCCEEEEEEECC
T ss_conf 702607899998--37983899--65---64122676664446--688999976036874345666066
No 187
>smart00475 53EXOc 5'-3' exonuclease.
Probab=34.55 E-value=35 Score=15.11 Aligned_cols=51 Identities=24% Similarity=0.518 Sum_probs=35.2
Q ss_pred HHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHCCCHHHHHHH
Q ss_conf 1233015208988622671778876235887650333799867999999971869998788
Q gi|254780170|r 252 EELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYRIIRHMGNYGEMFDR 312 (342)
Q Consensus 252 ee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~~i~~vGNYgei~~r 312 (342)
|++||+-.++- +.+-|.| +.+-|+---=|+.+.-|.+.|++-|+-.+||+.
T Consensus 165 e~~gv~P~q~~---------d~~aL~G-D~sDnIpGV~GIG~KtA~kLL~~ygsle~i~~~ 215 (259)
T smart00475 165 EKYGLTPEQII---------DYKALMG-DSSDNIPGVPGIGEKTAAKLLKEFGSLENILEN 215 (259)
T ss_pred HHHCCCHHHHH---------HHHHCCC-CCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHH
T ss_conf 88489989986---------3764046-453589999984789999999983999999983
No 188
>PRK03002 prsA peptidylprolyl isomerase; Reviewed
Probab=34.18 E-value=36 Score=15.07 Aligned_cols=45 Identities=20% Similarity=0.206 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHCCCCCCEEEECCHHHH---HHHHHCCCEEEEEECCHHHHHHHH
Q ss_conf 2699999999862998507874798999---999873960299825047999998
Q gi|254780170|r 155 TTELTLADYFKAHNMKYHPIVFERVEEI---DAAYRAHRCDAYTGDISALYALKL 206 (342)
Q Consensus 155 T~e~~l~~~~~~~~~~~~~v~~~~~~~a---~~al~~Gr~DA~~~D~s~La~~~~ 206 (342)
.++..+++++.. .+.+..+.+++.++| ...+.+|. |-..||-..+
T Consensus 124 vtd~d~k~~Y~p-ev~~~hIlv~~e~~A~~v~~~l~~G~------dF~~lAk~~S 171 (285)
T PRK03002 124 VTEKDVKDHYKP-EIKASHILVSDENEAKEIKKKLDAGA------SFEELAKQES 171 (285)
T ss_pred CCHHHHHHHCCC-CEEEEEEEECCHHHHHHHHHHHHCCC------CHHHHHHHHC
T ss_conf 889999986187-63888877789999999999988799------9999999968
No 189
>pfam01381 HTH_3 Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI.
Probab=34.01 E-value=31 Score=15.47 Aligned_cols=40 Identities=28% Similarity=0.569 Sum_probs=27.5
Q ss_pred HHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHH
Q ss_conf 1212330152089886226717788762358876503337998679
Q gi|254780170|r 250 TAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDW 295 (342)
Q Consensus 250 ~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~ 295 (342)
.|+..||+.+.+......-..|.+..+. .+.+.||.+.+|
T Consensus 15 lA~~~gis~~~is~~E~g~~~p~~~~l~------~ia~~l~v~~~~ 54 (55)
T pfam01381 15 LAEKLGVSRSTISKIENGKREPSLETLK------KLAEALGVSLDE 54 (55)
T ss_pred HHHHHCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHH
T ss_conf 9999896999999998799999999999------999997897987
No 190
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.93 E-value=36 Score=15.05 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHHHHHH--HCCCCCHHHHH
Q ss_conf 913899999999999984--01244216899
Q gi|254780170|r 1 MYKDFFVSILCLIILFFT--SFSTNASILGD 29 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~--~~aa~a~tLd~ 29 (342)
|+|++++++++.+++..+ .....+.++.+
T Consensus 1 M~kk~~~a~~~s~v~~s~~~~t~V~a~~~~~ 31 (265)
T COG3883 1 MKKKILLAVLLSLVIISTAFLTTVFAALLSD 31 (265)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 9148999999999999981100021335334
No 191
>PRK09934 putative fimbrial protein; Provisional
Probab=33.86 E-value=34 Score=15.17 Aligned_cols=19 Identities=16% Similarity=0.158 Sum_probs=10.0
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q ss_conf 9138999999999999840
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTS 19 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~ 19 (342)
|||.++..++.+++...+.
T Consensus 1 mkk~~l~~~~~l~~~~~~~ 19 (171)
T PRK09934 1 MRRVFIAIFCGLLWSPLSQ 19 (171)
T ss_pred CHHHHHHHHHHHHHHHHHH
T ss_conf 9268999999999863442
No 192
>pfam12262 Lipase_bact_N Bacterial virulence factor lipase N-terminal. This domain family is found in bacteria, and is typically between 258 and 271 amino acids in length. There are two conserved sequence motifs: DGT and DGWST. This family is the N-terminal region of bacterial virulence factor lipase. The N-terminal region contains a potential signalling sequence.
Probab=33.86 E-value=28 Score=15.72 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHHHHHHHHHC
Q ss_conf 91389999999999998401
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSF 20 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~ 20 (342)
|||+++.++++..+.+..|.
T Consensus 1 MKk~~l~~~i~SAL~LaGCg 20 (269)
T pfam12262 1 MKKKFLALLLASALLLAGCG 20 (269)
T ss_pred CCHHHHHHHHHHHHHHCCCC
T ss_conf 92479999999986411157
No 193
>KOG4254 consensus
Probab=33.76 E-value=14 Score=17.65 Aligned_cols=97 Identities=21% Similarity=0.246 Sum_probs=62.4
Q ss_pred HCCCCHHHCCCCC-CCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCC
Q ss_conf 3678001002564-442371010002777579999887744331121233015208988622671778876235887650
Q gi|254780170|r 207 TNDRPSEHVILPD-IISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNI 285 (342)
Q Consensus 207 ~~~~p~~~~il~e-~iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~ 285 (342)
....|..|+|.=- ..+-|-..-.-++.+++.++..--.++..|++=.-|..+. |.... --+-|..||+||.. -|+.
T Consensus 412 tlappg~Hvl~lf~~~t~~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfsss-v~~~d-vgTP~t~qr~l~~~-~Gn~ 488 (561)
T KOG4254 412 TLAPPGKHVLHLFTQYTPEEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSSS-VESYD-VGTPPTHQRFLGRP-GGNI 488 (561)
T ss_pred CCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCE-EEEEE-CCCCCHHHHHHCCC-CCCC
T ss_conf 758988618998436886564568742116788999999999999976786651-78886-47993266774478-8751
Q ss_pred HH-HCCCCHHHHHHHHHHCCCH
Q ss_conf 33-3799867999999971869
Q gi|254780170|r 286 GE-ALGLTKDWTYRIIRHMGNY 306 (342)
Q Consensus 286 g~-~lgl~~~~~~~~i~~vGNY 306 (342)
+. .++|+..+..+-+..--||
T Consensus 489 ~~~~~~ld~g~l~~Pv~~~s~y 510 (561)
T KOG4254 489 FHGAMGLDQGYLHRPVMAWSNY 510 (561)
T ss_pred CCCCCCCCCCCCCCCCCCCCCC
T ss_conf 5763555543335773233467
No 194
>PRK05866 short chain dehydrogenase; Provisional
Probab=33.18 E-value=37 Score=14.97 Aligned_cols=35 Identities=6% Similarity=-0.186 Sum_probs=14.0
Q ss_pred EEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHH
Q ss_conf 99871789883068898988015099999999996
Q gi|254780170|r 37 KCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAI 71 (342)
Q Consensus 37 ~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal 71 (342)
.++-++..+||......=-.+|=.-=+.+++|.++
T Consensus 26 ~~~~~~~~~P~dL~GKvaLITGassGIG~aiA~~l 60 (290)
T PRK05866 26 LLPNRPPRTPVDLTGKRILLTGASSGIGEAAAEKF 60 (290)
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHH
T ss_conf 56789999497899998999081309999999999
No 195
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=33.01 E-value=37 Score=14.95 Aligned_cols=86 Identities=16% Similarity=0.167 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 79899999987396029982504799999836780010025644423710100027775799998877443311212330
Q gi|254780170|r 177 ERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEELGI 256 (342)
Q Consensus 177 ~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~gi 256 (342)
++.+..++++.+|.+|++++|.. |.+.+.+-.+..|.+.|.|+. -=+..+--+ +... -+.|+
T Consensus 206 ~d~~aL~~~l~~G~ID~i~SDHa---------P~~~~~K~~~~~f~~a~~G~~--glet~lpl~-----l~~~--~~~~l 267 (337)
T cd01302 206 EDREALWEGVKNGKIDTIASDHA---------PHSKEEKESGKDIWKAPPGFP--GLETRLPIL-----LTEG--VKRGL 267 (337)
T ss_pred HHHHHHHHHHHCCCCCEEEECCC---------CCCHHHHCCCCCCCCCCCCCC--CHHHHHHHH-----HHHH--HHCCC
T ss_conf 89999999887499558985888---------989888102467464889875--277799999-----9999--85499
Q ss_pred CHHHHHHHHHCCCCHHHHHHHCCCCCCC
Q ss_conf 1520898862267177887623588765
Q gi|254780170|r 257 TQKNINQVSKDTTNPDVQRFLGIDKSSN 284 (342)
Q Consensus 257 t~~nv~~~~~~s~~p~i~r~lg~~~~~~ 284 (342)
+=..+-++ .|.|| .|+||+.+.|.
T Consensus 268 sl~~~v~~--~s~nP--Aki~gl~~kG~ 291 (337)
T cd01302 268 SLETLVEI--LSENP--ARIFGLYPKGT 291 (337)
T ss_pred CHHHHHHH--HHHHH--HHHHCCCCCCC
T ss_conf 99999999--97889--99959898886
No 196
>pfam09403 FadA Adhesion protein FadA. FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices.
Probab=32.06 E-value=33 Score=15.24 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHHHHHHHHHCC
Q ss_conf 913899999999999984012
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFS 21 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~a 21 (342)
|+|.++++++++...++++..
T Consensus 1 MkK~ll~~~llls~~s~aa~~ 21 (126)
T pfam09403 1 MKKILLCSMLILSSLSYAAEA 21 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
T ss_conf 916999999999999987457
No 197
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=32.00 E-value=39 Score=14.85 Aligned_cols=99 Identities=9% Similarity=0.138 Sum_probs=60.1
Q ss_pred EEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEE-EECC
Q ss_conf 981243253201102784353223440234630211347536417862034313426999999998629985078-7479
Q gi|254780170|r 100 LSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPI-VFER 178 (342)
Q Consensus 100 l~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v-~~~~ 178 (342)
.++..|-..-++....++|. +.-+++.+++--. .......+.|++|...+|.-.-..|.+.++++|..++.+ .|..
T Consensus 88 AVG~~TA~aL~~~G~~v~~p-~~~~~SE~LL~lp--~l~~~~~~~g~rVLi~rG~gGR~~L~~~L~~rGa~V~~~~~YrR 164 (255)
T PRK05752 88 SVGAATAAILQDYGLDVSYP-EQGDDSEALLALP--ALRQALAVPDPRVLIMRGEGGRELLAERLREQGASVDYLELYRR 164 (255)
T ss_pred EECHHHHHHHHHCCCCCCCC-CCCCCHHHHHHCH--HHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCEEEEEEEEEE
T ss_conf 98899999999769982448-9877767886055--45422047788799981676178999999988998989987884
Q ss_pred ------HHHHHHHHHCCCEEEEEECCHHH
Q ss_conf ------89999998739602998250479
Q gi|254780170|r 179 ------VEEIDAAYRAHRCDAYTGDISAL 201 (342)
Q Consensus 179 ------~~~a~~al~~Gr~DA~~~D~s~L 201 (342)
..+..+.+..+++|+++.-.+..
T Consensus 165 ~~p~~~~~~~~~~~~~~~id~i~~TS~e~ 193 (255)
T PRK05752 165 CLPDYPAGTLLQRVEAERLNGLVVSSGQG 193 (255)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEECCHHH
T ss_conf 38999849999999808999999881999
No 198
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-Dihydroxy-2-butanone 4-phosphate is biosynthesized from ribulose 5-phosphate and serves as the biosynthetic precursor for the xylene ring of riboflavin . It is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 34-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process.
Probab=31.43 E-value=36 Score=15.05 Aligned_cols=34 Identities=12% Similarity=-0.078 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCH
Q ss_conf 798999999873960299825047999998367800
Q gi|254780170|r 177 ERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPS 212 (342)
Q Consensus 177 ~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~ 212 (342)
.+-.-..++..+..|.-+..|+-.=.+ ..+..|+
T Consensus 119 ~DR~~Ti~~~l~~~~~~vmmgr~~dFG--~df~rPG 152 (230)
T TIGR00506 119 NDRALTIRAALADVVKPVMMGRKEDFG--SDFRRPG 152 (230)
T ss_pred HHHHHHHHHHHCCCCCEEECCCCCCCH--HHCCCCC
T ss_conf 478899988746766422227624551--1436888
No 199
>pfam05968 Bacillus_PapR Bacillus PapR protein. This family consists of the Bacillus species specific PapR protein. The papR gene belongs to the PlcR regulon and is located 70 bp downstream from plcR. It encodes a 48-amino-acid peptide. Disruption of the papR gene abolishes expression of the PlcR regulon, resulting in a large decrease in haemolysis and virulence in insect larvae. A processed form of PapR activates the PlcR regulon by allowing PlcR to bind to its DNA target. This activating mechanism is strain specific.
Probab=31.41 E-value=29 Score=15.60 Aligned_cols=18 Identities=33% Similarity=0.318 Sum_probs=10.6
Q ss_pred CHHHHHHHHHHHHHHHHH
Q ss_conf 913899999999999984
Q gi|254780170|r 1 MYKDFFVSILCLIILFFT 18 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~ 18 (342)
|||-++.++++++.+...
T Consensus 1 MKKlLigslltlAM~wGi 18 (48)
T pfam05968 1 MKKLLIGSLLTLAMLWGI 18 (48)
T ss_pred CCHHHHHHHHHHHHHHCC
T ss_conf 904788689999999533
No 200
>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=31.07 E-value=40 Score=14.75 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=40.8
Q ss_pred CEEEEEEECCCCCC--EEECCCCCEEEEHHHH-----HHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCC
Q ss_conf 94999871789883--0688989880150999-----9999999679822025998143100267743962799812432
Q gi|254780170|r 34 GFLKCGINTGLVGF--AEVKANGDWKGFDVDF-----CRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDW 106 (342)
Q Consensus 34 G~L~vGv~~~~ppf--s~~d~~G~~~GfDVDl-----~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~ 106 (342)
.+|=+|.-.+.-+. ....++.+.++.|++- +++-+++... ..++++ +.+.+..+..+++|++++|-.+
T Consensus 34 ~vLDlGcG~G~i~~~la~~~p~~~v~~vDi~~~Al~~a~~N~~~n~l--~~v~v~---~~D~~~~~~~~~fD~IvsNPP~ 108 (170)
T pfam05175 34 KVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGL--ENGEVF---WSDLYSAVEPGKFDLIISNPPF 108 (170)
T ss_pred CEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCC--CEEEEE---ECCCCCCCCCCCEEEEEECCCC
T ss_conf 49997764829899999978986798515449999999999998099--848999---7446665778866089989772
Q ss_pred CCCC
Q ss_conf 5320
Q gi|254780170|r 107 TLLR 110 (342)
Q Consensus 107 T~~R 110 (342)
-..+
T Consensus 109 h~g~ 112 (170)
T pfam05175 109 HAGK 112 (170)
T ss_pred CCCC
T ss_conf 1142
No 201
>smart00530 HTH_XRE Helix-turn-helix XRE-family like proteins.
Probab=31.06 E-value=36 Score=15.05 Aligned_cols=40 Identities=23% Similarity=0.538 Sum_probs=24.6
Q ss_pred HHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHH
Q ss_conf 1212330152089886226717788762358876503337998679
Q gi|254780170|r 250 TAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDW 295 (342)
Q Consensus 250 ~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~ 295 (342)
.|+..||+...|.........|.+..+. .+.+.||.+.+|
T Consensus 16 lA~~~gis~~~is~~E~g~~~p~~~~l~------~ia~~l~~~~~~ 55 (56)
T smart00530 16 LAEKLGVSRSTLSRIENGKRKPSLETLK------KLAKALGVSLDE 55 (56)
T ss_pred HHHHHCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHH
T ss_conf 9999895999999999799899999999------999998888987
No 202
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=30.97 E-value=40 Score=14.74 Aligned_cols=13 Identities=15% Similarity=0.266 Sum_probs=5.7
Q ss_pred CCHHHHHHHHHCC
Q ss_conf 7989999998739
Q gi|254780170|r 177 ERVEEIDAAYRAH 189 (342)
Q Consensus 177 ~~~~~a~~al~~G 189 (342)
.+.+++...|..|
T Consensus 84 rs~e~~~~ll~~G 96 (253)
T PRK01033 84 KTVEQAKRIFSLG 96 (253)
T ss_pred CCHHHHHHHHHCC
T ss_conf 2168889998679
No 203
>cd00093 HTH_XRE Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.
Probab=30.78 E-value=38 Score=14.93 Aligned_cols=40 Identities=28% Similarity=0.567 Sum_probs=24.1
Q ss_pred HHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHH
Q ss_conf 1212330152089886226717788762358876503337998679
Q gi|254780170|r 250 TAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDW 295 (342)
Q Consensus 250 ~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~ 295 (342)
.|+..||+...+.........|.+.++. .+.+.+|++.+|
T Consensus 18 lA~~~gis~~~l~~~e~g~~~p~~~~l~------~la~~~~~~~~~ 57 (58)
T cd00093 18 LAEKLGVSRSTISRIENGKRNPSLETLE------KLAKALGVSLDE 57 (58)
T ss_pred HHHHCCCCHHHHHHHHCCCCCCCHHHHH------HHHHHHCCCHHH
T ss_conf 9571499999999998799899999999------999993898987
No 204
>pfam12276 DUF3617 Protein of unknown function (DUF3617). This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=30.42 E-value=36 Score=15.08 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 91389999999999998401244216
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNASI 26 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a~t 26 (342)
|+|.+++++++++++...+.++++..
T Consensus 1 M~~~~~~~~~~~~~~~~~~~a~~~~~ 26 (149)
T pfam12276 1 MKRLLLLALLLLLLLLAAAAAAAAQD 26 (149)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 95057899999999862653100555
No 205
>pfam10566 Glyco_hydro_97 Glycoside hydrolase 97. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands.
Probab=30.35 E-value=24 Score=16.18 Aligned_cols=60 Identities=15% Similarity=0.099 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEE--CCCCCCEEECCCCCE------EEEHHH
Q ss_conf 91389999999999998401244216899985794999871--789883068898988------015099
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNASILGDIKKRGFLKCGIN--TGLVGFAEVKANGDW------KGFDVD 62 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a~tLd~Vk~rG~L~vGv~--~~~ppfs~~d~~G~~------~GfDVD 62 (342)
|||.+++.++.++++..+++++ +.+++-.---|.|++-+. .+.+-|+. .-+|+. -||..+
T Consensus 1 mkk~~~~~~~~~~~~~~~~~~~-~k~~~v~SPDG~l~v~v~~~~g~l~YsV-~~~g~~vi~~S~LGl~~~ 68 (643)
T pfam10566 1 MKKLTIILLAFLLLIGNLSLAA-RKNYQLTSPNGKLKVELTLEGNELVYQI-QYQKQEVIQNSPLGLVLD 68 (643)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH-CCEEEEECCCCCEEEEEEECCCEEEEEE-EECCEEEEECCCCCEEEC
T ss_conf 9502578999999997656754-1623899989988999998899599999-999989984387857986
No 206
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=30.24 E-value=41 Score=14.66 Aligned_cols=20 Identities=35% Similarity=0.473 Sum_probs=10.2
Q ss_pred HHHHHCCCEEEEEECCCCCCCCH
Q ss_conf 26774396279981243253201
Q gi|254780170|r 89 FLALQSKQIDILSRNTDWTLLRE 111 (342)
Q Consensus 89 f~aL~sG~vDil~~~~T~T~~Rd 111 (342)
+..|..|++|||++ +|+=||
T Consensus 490 irdLR~G~fDVLVG---INLLRE 509 (667)
T TIGR00631 490 IRDLRLGEFDVLVG---INLLRE 509 (667)
T ss_pred HHHHCCCCCEEEEE---CCHHHC
T ss_conf 99844788408860---002002
No 207
>PTZ00334 trans-sialidase; Provisional
Probab=30.21 E-value=39 Score=14.82 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9138999999999999840124
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFST 22 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa 22 (342)
|.|++|.++++|+++.+.+|..
T Consensus 39 MSRrvF~SAVLLLlvVmMCCgs 60 (780)
T PTZ00334 39 MSRRVFTSAVLLLLVVMMCCGS 60 (780)
T ss_pred CCHHHHHHHHHHHHHHHEECCC
T ss_conf 5134467789999998420898
No 208
>TIGR02747 TraV type IV conjugative transfer system protein TraV; InterPro: IPR014118 This entry includes TraV, which is a component of conjugative type IV secretion system. TraV is an outer membrane lipoprotein that is believed to interact with the secretin TraK , , . The alignment contains three conserved cysteines in the N-terminal half..
Probab=30.16 E-value=36 Score=15.04 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9138999999999999840124
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFST 22 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa 22 (342)
|.|..++++++++++.++.|++
T Consensus 1 Mmr~~~L~~~~~~~f~LtGCsa 22 (174)
T TIGR02747 1 MMRLKVLLLLACVAFLLTGCSA 22 (174)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9067899999999872002577
No 209
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=30.12 E-value=42 Score=14.65 Aligned_cols=52 Identities=17% Similarity=0.154 Sum_probs=26.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCH--------HHHHHHHHCCCEEEEEEC
Q ss_conf 86203431342699999999862998507874798--------999999873960299825
Q gi|254780170|r 145 GASICVQAGTTTELTLADYFKAHNMKYHPIVFERV--------EEIDAAYRAHRCDAYTGD 197 (342)
Q Consensus 145 G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~--------~~a~~al~~Gr~DA~~~D 197 (342)
|.+.-+..|.-+|.. ++-++..=+++.++.+++. ...+..+..|+.|-+++-
T Consensus 482 gs~~L~~~G~Gteri-eeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGT 541 (730)
T COG1198 482 GSEHLRAVGPGTERI-EEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGT 541 (730)
T ss_pred CCCEEEEECCCHHHH-HHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCEEECC
T ss_conf 997369964619999-999998789994799846666643568999999757998866341
No 210
>PRK03353 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=29.87 E-value=26 Score=15.96 Aligned_cols=12 Identities=33% Similarity=0.343 Sum_probs=6.4
Q ss_pred CEEEECCCCCHH
Q ss_conf 101000277757
Q gi|254780170|r 225 PLAPAIIQGDTE 236 (342)
Q Consensus 225 Plg~avr~gD~~ 236 (342)
|=|...|+|-.+
T Consensus 144 ~GGvl~R~GHTE 155 (217)
T PRK03353 144 PGGVLTRRGHTE 155 (217)
T ss_pred CCCCCCCCCHHH
T ss_conf 688353797899
No 211
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=29.60 E-value=42 Score=14.59 Aligned_cols=64 Identities=22% Similarity=0.262 Sum_probs=45.5
Q ss_pred HHCCCCEEEEECCCHHHHHHHHHHHCCCCCC-EEEECC-------HHHHHHHHHCCCEEEEEECC-HHHHHHH
Q ss_conf 4178620343134269999999986299850-787479-------89999998739602998250-4799999
Q gi|254780170|r 142 QLSGASICVQAGTTTELTLADYFKAHNMKYH-PIVFER-------VEEIDAAYRAHRCDAYTGDI-SALYALK 205 (342)
Q Consensus 142 dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~-~v~~~~-------~~~a~~al~~Gr~DA~~~D~-s~La~~~ 205 (342)
++.|++|-+..|.-....|.+.+++.|..++ ++.|++ ......++..+++|+++--. +.+....
T Consensus 123 ~~~~~~vL~~~g~~~~~~L~~~L~~~g~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~~d~i~ftS~~~v~~~~ 195 (252)
T PRK05928 123 NLPGKRVLYLRGNGGRPLLGDFLQERGADVDECEVYERKPPKLEGAEELIEELQTGEVDAIIFTSPSMVRAFL 195 (252)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHCCCEEEEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEECHHHHHHHH
T ss_conf 7789879998167666578999997798479998657637888827999999862898799990999999999
No 212
>TIGR01885 Orn_aminotrans ornithine--oxo-acid transaminase; InterPro: IPR010164 Ornithine aminotransferase catalyses the conversion of L-ornithine and a 2-oxo acid to L-glutamate 5-semialdehyde and an L-amino acid. This enzyme is found in low-GC bacteria, where it is responsible for the fourth step in arginine biosynthesis, and in the mitochondrial matrix of eukaryotes, where it controls L-ornithine levels in tissues. In human hereditary ornithine aminotransferase deficiency, the elevated levels of intraocular concentrations of ornithine are responsible for gyrate atrophy, which affects the CNS and peripheral nervous system ; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding.
Probab=29.14 E-value=23 Score=16.25 Aligned_cols=131 Identities=15% Similarity=0.117 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHCCCCCEEEEE--------ECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEE
Q ss_conf 999999999967982202599--------814310026774396279981243253201102784353223440234630
Q gi|254780170|r 61 VDFCRALSSAIFDDPSKIQYL--------PLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMH 132 (342)
Q Consensus 61 VDl~raiAaal~gd~~kVe~v--------~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVr 132 (342)
.++.+|+-..+ .|+... --.+..-++.|-.||.+.+.-.-|=++.=|+++++ +.-|=|...++--.
T Consensus 61 P~i~~Al~~Q~----~KlTL~Sraf~nd~lg~~~~~~t~LfgGk~~~vL~mNTGaEAvEtA~KL--AR~WgY~~K~ip~~ 134 (426)
T TIGR01885 61 PKIVNALKNQA----DKLTLTSRAFHNDVLGEFAKYLTKLFGGKYEKVLPMNTGAEAVETALKL--ARKWGYEVKGIPRN 134 (426)
T ss_pred HHHHHHHHHHH----HHCCCHHHHHHCCHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHH--HHHHCCCCCCCCCC
T ss_conf 16899999998----5137102766060357899999975499510560456873479999999--99744135785576
Q ss_pred CCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCC------CCCEEEECCHHHHHHHHHCC-----CEEEEEEC
Q ss_conf 2113475364178620343134269999999986299------85078747989999998739-----60299825
Q gi|254780170|r 133 KKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNM------KYHPIVFERVEEIDAAYRAH-----RCDAYTGD 197 (342)
Q Consensus 133 k~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~------~~~~v~~~~~~~a~~al~~G-----r~DA~~~D 197 (342)
|..=|...-..-|+|.+.+.-||-+..-++-|-.-=+ .+..|+|++.+...++|.+= .+-|++-.
T Consensus 135 kA~ii~~~GNFhGRTlgA~S~Std~e~~k~~FGPflPnvasGhgf~~iPYgd~EAl~~aL~~P~~~GDnVAA~i~E 210 (426)
T TIGR01885 135 KAKIIAASGNFHGRTLGAVSASTDSETSKKGFGPFLPNVASGHGFRKIPYGDLEALRKALQDPKKTGDNVAAFILE 210 (426)
T ss_pred CEEEEEECCCCCCHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf 2389985388733035443202672120067879677433578521155888789999972757788868999950
No 213
>KOG4716 consensus
Probab=28.92 E-value=44 Score=14.52 Aligned_cols=49 Identities=20% Similarity=0.398 Sum_probs=36.2
Q ss_pred CEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCC
Q ss_conf 880150999999999967982202599814310026774396279981243
Q gi|254780170|r 55 DWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTD 105 (342)
Q Consensus 55 ~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T 105 (342)
-+.|||-|++.-|++.|- ...|+|....-..|...+.+|+.-+...++.
T Consensus 232 ~LrGFDqdmae~v~~~m~--~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~ 280 (503)
T KOG4716 232 LLRGFDQDMAELVAEHME--ERGIKFLRKTVPERVEQIDDGKLRVFYKNTN 280 (503)
T ss_pred ECCCCCHHHHHHHHHHHH--HHCCCEEECCCCEEEEECCCCCEEEEEECCC
T ss_conf 102526999999999999--7097334033530102204772799961255
No 214
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=28.37 E-value=45 Score=14.46 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=24.3
Q ss_pred CCCHHHCCCCHHHHHHHHHHCC-------CHHHHHHHHCC
Q ss_conf 6503337998679999999718-------69998788648
Q gi|254780170|r 283 SNIGEALGLTKDWTYRIIRHMG-------NYGEMFDRNLG 315 (342)
Q Consensus 283 ~~~g~~lgl~~~~~~~~i~~vG-------NYgei~~rnlg 315 (342)
.|+| .|-+.+||..+++..| .|+.||-||.=
T Consensus 56 ~NFG--~GSSRE~A~~al~~~Gi~aVIA~SFarIf~rN~i 93 (121)
T cd01579 56 ENYG--QGSSREHAALAPMYLGVRAVLAKSFARIHRANLI 93 (121)
T ss_pred CCCC--CCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHH
T ss_conf 7567--8972899999999839459997589999998788
No 215
>pfam02402 Lysis_col Lysis protein. These small bacterial proteins are required for colicin release and partial cell lysis. This family contains lysis proteins for several different forms of colicin. Bacillus subtilis lytA has been included in this family, the similarity is not highly significant, however it is also a short protein, that is involved in secretion of other proteins (Bateman A pers. obs.).
Probab=28.36 E-value=25 Score=16.08 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 91389999999999998401244
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTN 23 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~ 23 (342)
|||.++..++.+. +..++|.++
T Consensus 1 Mkki~~~~i~~~~-~~L~aCQaN 22 (46)
T pfam02402 1 MKKILFIGILLLT-VLLSACQAN 22 (46)
T ss_pred CCEEEEHHHHHHH-HHHHHHHHH
T ss_conf 9242013999999-999985550
No 216
>PRK13893 conjugal transfer protein TrbM; Provisional
Probab=28.26 E-value=42 Score=14.64 Aligned_cols=24 Identities=17% Similarity=0.065 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 913899999999999984012442
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNA 24 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a 24 (342)
|+|++|..+.+++.+..++.++.+
T Consensus 1 m~kk~l~~a~~~~a~~~~~g~~~a 24 (193)
T PRK13893 1 MKKKLLALAAAVAALGSAAGTASA 24 (193)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCH
T ss_conf 961488999999997047564414
No 217
>PRK09733 putative fimbrial protein; Provisional
Probab=27.80 E-value=38 Score=14.92 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=11.0
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 913899999999999
Q gi|254780170|r 1 MYKDFFVSILCLIIL 15 (342)
Q Consensus 1 M~K~~l~~~l~l~~~ 15 (342)
|||.++.+.+++++.
T Consensus 2 mKk~ll~~~~~~~~s 16 (181)
T PRK09733 2 FKKSLLVAGVAMILS 16 (181)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 068899999999986
No 218
>TIGR00363 TIGR00363 lipoprotein, YaeC family; InterPro: IPR004478 This family of putative lipoproteins contains a consensus site for lipoprotein signal sequence cleavage. Escherichia coli contains several lipoproteins in addition to the major outer membrane lipoprotein. Members of this family are often localized in the cytoplasmic membrane and are attached to it by a lipid anchor..
Probab=27.77 E-value=40 Score=14.78 Aligned_cols=191 Identities=16% Similarity=0.172 Sum_probs=93.2
Q ss_pred HHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCC-HHHHHCCCEEEEEECCCCCCC
Q ss_conf 8579499987178988306889898801509999999999679822025998143100-267743962799812432532
Q gi|254780170|r 31 KKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKER-FLALQSKQIDILSRNTDWTLL 109 (342)
Q Consensus 31 k~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~r-f~aL~sG~vDil~~~~T~T~~ 109 (342)
.....+++|+-.+.- . --.++++.+|+.-.| ..|+++.....-. -.++..|++|.-+-..-.-++
T Consensus 20 ~~~~~ikvGv~~G~e-------~-----~vae~a~kvak~kyG--ldv~lv~f~~~~lPn~a~~~G~~dan~~qh~Pyl~ 85 (264)
T TIGR00363 20 AAPKKIKVGVISGAE-------Q-----QVAEVAKKVAKEKYG--LDVELVEFNDYVLPNEAVSKGDLDANAFQHKPYLD 85 (264)
T ss_pred HHHHHEEEEEEECCC-------H-----HHHHHHHHHHHHHCC--CEEEEEECCCCCCCHHHHCCCCCCHHHHHCCCCHH
T ss_conf 100010477861770-------3-----489999987433216--31688611452055123103651024442275212
Q ss_pred CHHCCCCCCCCCCCCCCEEEEEECC---CCCCCHHHH-CCCCEEEEECCCHHHH-------------------HHHHH--
Q ss_conf 0110278435322344023463021---134753641-7862034313426999-------------------99999--
Q gi|254780170|r 110 REISLGLAFRPITYFDGQGFIMHKK---KGISSVSQL-SGASICVQAGTTTELT-------------------LADYF-- 164 (342)
Q Consensus 110 Rd~~~~v~Fs~~~~~dgq~~lVrk~---~~i~s~~dL-~G~~I~v~~GTT~e~~-------------------l~~~~-- 164 (342)
.+....-.+ -...-|..|+-+-. ..|+++.+| +|.+|.+...-|...- |...+
T Consensus 86 ~~~~~~~~~--~lv~vGntfvyP~aGyskkik~~~~~~~G~~v~~PndPtn~Gr~l~ll~k~~li~lk~~~~ll~t~ld~ 163 (264)
T TIGR00363 86 QDAKAKNGY--KLVAVGNTFVYPLAGYSKKIKSVDELQDGAKVAVPNDPTNLGRALLLLQKEGLIKLKDGKGLLPTVLDI 163 (264)
T ss_pred HHHHHHHCC--CEEEEECEEEECCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEECCCCEEEECCCCHHHHHHHH
T ss_conf 566541024--168870502311210346664288651587797358863003011122100001210113035666655
Q ss_pred HHCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCE-EEECCCCCHHHHHHHH
Q ss_conf 86299850787479899999987396029982504799999836780010025644423710-1000277757999988
Q gi|254780170|r 165 KAHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPL-APAIIQGDTEWYNIVS 242 (342)
Q Consensus 165 ~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPl-g~avr~gD~~w~d~V~ 242 (342)
..+.-+.+++..+.. ..-..|...++|.-+...+ +.....+....|-+.+.+- ..|| -+.|.+.|..=...|+
T Consensus 164 ~~nP~~l~i~e~~~~-~~~r~ldd~~~~~a~~~~t--y~~q~Gl~~~~d~~f~edk--~sPyvn~~v~r~dnk~~~~v~ 237 (264)
T TIGR00363 164 VENPKKLKIVELEAA-QLPRALDDAKVDLAVINTT--YASQVGLSPAKDGVFVEDK--ESPYVNIIVAREDNKDAENVK 237 (264)
T ss_pred HCCCCCEEEEEECCH-HHHHHCCCCCEEEEEEHHH--HHHHHCCCCCCCEEEEEEC--CCCEEEEEEEECCCCCHHHHH
T ss_conf 318541168861301-2122205430123320012--3444066502160588607--887589998514440068999
No 219
>TIGR00580 mfd transcription-repair coupling factor; InterPro: IPR004576 All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transcribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by TcrF, which releases RNAP and the truncated transcript. The TcrF may replace RNAP at the lesion site and then recruit the UvrA/B/C repair system.; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=27.76 E-value=46 Score=14.39 Aligned_cols=143 Identities=22% Similarity=0.279 Sum_probs=73.3
Q ss_pred CCCCEEEEEECCCCCCCHHHHC--------CCCEEEEECCCHHHHHHHHHHHCCC-CCCEEEECCHHHH------HHHHH
Q ss_conf 3440234630211347536417--------8620343134269999999986299-8507874798999------99987
Q gi|254780170|r 123 YFDGQGFIMHKKKGISSVSQLS--------GASICVQAGTTTELTLADYFKAHNM-KYHPIVFERVEEI------DAAYR 187 (342)
Q Consensus 123 ~~dgq~~lVrk~~~i~s~~dL~--------G~~I~v~~GTT~e~~l~~~~~~~~~-~~~~v~~~~~~~a------~~al~ 187 (342)
.-+||.|.|... |.++..++ -.+|||.-|=-+|.-|++.+.+..- .+++..-.+.-|. -+-+.
T Consensus 719 ~RgGQvFyv~Nr--ie~i~~~~~~l~~LVP~arIaiaHGqM~e~eLE~~m~~F~~~~~~vLvcTTIIE~GIDIPnANTiI 796 (997)
T TIGR00580 719 LRGGQVFYVHNR--IESIEKLKTQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFDVLVCTTIIESGIDIPNANTII 796 (997)
T ss_pred CCCCEEEEEECC--CCCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCHHHHHHHH
T ss_conf 139818998088--135789999998508432678883356845689999986268433013221465056410012686
Q ss_pred CCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
Q ss_conf 39602998250479999983678001002564442371010002777579999887744331121233015208988622
Q gi|254780170|r 188 AHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEELGITQKNINQVSKD 267 (342)
Q Consensus 188 ~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~git~~nv~~~~~~ 267 (342)
=-++|-| -.++|+-+|-.-. +=.+.-||.-+=..+.+...--.-=+.|+-+-.|+|=. =.| +
T Consensus 797 i~~AD~F--GLaQLYQLRGRVG----------Rs~~~AYAYlL~~~~~~Lt~~A~~RL~ai~~f~eLGaG-f~i----A- 858 (997)
T TIGR00580 797 IDRADKF--GLAQLYQLRGRVG----------RSKKKAYAYLLYPHQKALTEDALKRLEAIQEFSELGAG-FKI----A- 858 (997)
T ss_pred HHHHCCC--CHHHHHHCCCEEC----------CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCH-HHH----H-
T ss_conf 8752114--7034745363120----------58712689833477400145899999999730113521-678----8-
Q ss_pred CCCHHHH---HHHCCCCCCCC
Q ss_conf 6717788---76235887650
Q gi|254780170|r 268 TTNPDVQ---RFLGIDKSSNI 285 (342)
Q Consensus 268 s~~p~i~---r~lg~~~~~~~ 285 (342)
+.|=||| -|||.|.+|.+
T Consensus 859 ~hDlEIRGaGNLLG~eQSG~I 879 (997)
T TIGR00580 859 LHDLEIRGAGNLLGEEQSGHI 879 (997)
T ss_pred HHCCCCCCCHHHCCCCCCCHH
T ss_conf 631100355001260126406
No 220
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=27.73 E-value=45 Score=14.41 Aligned_cols=29 Identities=14% Similarity=0.071 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 913899999999999984012442168999
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNASILGDI 30 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a~tLd~V 30 (342)
|||+++.++++..+.+..| ...+++.+++
T Consensus 1 MKk~~l~~~iasal~LagC-Gg~~~~~~~~ 29 (792)
T TIGR03502 1 MKKLLLSLAIASALGLAGC-GDNSDGTEDV 29 (792)
T ss_pred CCHHHHHHHHHHHHHHHCC-CCCCCCCCCC
T ss_conf 9337899999998750045-7886677776
No 221
>pfam02401 LYTB LytB protein. The mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway for isoprenoid biosynthesis is essential in many eubacteria, plants, and the malaria parasite. The LytB gene is involved in the trunk line of the MEP pathway.
Probab=27.47 E-value=46 Score=14.36 Aligned_cols=153 Identities=11% Similarity=0.107 Sum_probs=74.6
Q ss_pred CCHHHHHHHHCCEEEEEEECCCCCCEEECCCCC-----EEEEHHHHHHHHHHHHCCCCCEEEEEECC------CCCCHHH
Q ss_conf 421689998579499987178988306889898-----80150999999999967982202599814------3100267
Q gi|254780170|r 23 NASILGDIKKRGFLKCGINTGLVGFAEVKANGD-----WKGFDVDFCRALSSAIFDDPSKIQYLPLN------AKERFLA 91 (342)
Q Consensus 23 ~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~-----~~GfDVDl~raiAaal~gd~~kVe~v~~~------~~~rf~a 91 (342)
+-...++.+++|+..+---.+.| +|. -.|-..+.-+.+ ++.+ ++++..+ -......
T Consensus 40 N~~vv~~L~~~Gv~~v~~~~~i~-------~g~~ViirAHGv~~~~~~~a-~~~g-----l~viDaTCP~V~kvh~~v~~ 106 (280)
T pfam02401 40 NRHVVNRLRERGAIFVEELKEVP-------EGATVIFSAHGVSPEVREEA-KERG-----LQVIDATCPLVTKVHNAVER 106 (280)
T ss_pred CHHHHHHHHHCCCEEECCCCCCC-------CCCEEEEECCCCCHHHHHHH-HHCC-----CEEEECCCCCHHHHHHHHHH
T ss_conf 98999999988399813613378-------78889993999998999999-9749-----92993708015799999999
Q ss_pred HHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHH-H---HHHHHHHHC
Q ss_conf 743962799812432532011027843532234402346302113475364178620343134269-9---999999862
Q gi|254780170|r 92 LQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTE-L---TLADYFKAH 167 (342)
Q Consensus 92 L~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e-~---~l~~~~~~~ 167 (342)
+...-..+++-+-.--+|=... .. |..+..++|.....+..+...+.+++++..-||.- . .+.+.++.+
T Consensus 107 ~~~~Gy~iiiiG~~~HpEv~gi--~g-----~~~~~~~vv~~~~d~~~l~~~~~~k~~vvsQTT~~~~~~~~i~~~l~~~ 179 (280)
T pfam02401 107 MAKKGYHVILIGHKNHPEVEGT--VG-----YAPEQVFVVENAEDVAALPLQAETKLAVVTQTTLSLDDTAEIVAALRER 179 (280)
T ss_pred HHHCCCEEEEEECCCCHHHHHH--HH-----HCCCCCEECCCHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9868987999837987888869--98-----7578724317887884278888662699955655399999999999986
Q ss_pred CCCCCEEEECC-------HHHHHHHHHCCCEEEEEE
Q ss_conf 99850787479-------899999987396029982
Q gi|254780170|r 168 NMKYHPIVFER-------VEEIDAAYRAHRCDAYTG 196 (342)
Q Consensus 168 ~~~~~~v~~~~-------~~~a~~al~~Gr~DA~~~ 196 (342)
.+..+...|++ .+++...|. .+||+|+-
T Consensus 180 ~~~~~~~v~ntIC~aT~~RQ~a~~~lA-~~vD~miV 214 (280)
T pfam02401 180 YPEVRGPPFNTICYATQNRQEAVRELA-PEVDVVLV 214 (280)
T ss_pred CHHCCCCCCCCCCHHHHHHHHHHHHHH-HHCCEEEE
T ss_conf 621138885772275888999999777-54989999
No 222
>PRK00050 mraW S-adenosyl-methyltransferase MraW; Provisional
Probab=27.03 E-value=47 Score=14.31 Aligned_cols=104 Identities=22% Similarity=0.254 Sum_probs=56.0
Q ss_pred CCCCCEEEEHHHH-HHHHHHHHCCC-CCEEEEEECCCCCCHHHHHC-CCEEEEEECCCCCC--CCHHCCCCCCCCCCCCC
Q ss_conf 8989880150999-99999996798-22025998143100267743-96279981243253--20110278435322344
Q gi|254780170|r 51 KANGDWKGFDVDF-CRALSSAIFDD-PSKIQYLPLNAKERFLALQS-KQIDILSRNTDWTL--LREISLGLAFRPITYFD 125 (342)
Q Consensus 51 d~~G~~~GfDVDl-~raiAaal~gd-~~kVe~v~~~~~~rf~aL~s-G~vDil~~~~T~T~--~Rd~~~~v~Fs~~~~~d 125 (342)
.++|...|||-|- +-+.|...+.+ ..++.++..++++....|.. |++|-+.....+.. =.+..-||+|. .|
T Consensus 46 ~~~~~li~iDrD~~ai~~a~~~l~~~~~r~~~~~~nF~~l~~~l~~~~~vdgil~DLGvSS~Qld~~~RGFSF~----~d 121 (309)
T PRK00050 46 GPGGRLIAIDRDPQAIAAAKERLDPFGGRFTIVHGNFSDLAEYLAEVGKVDGILLDLGVSSPQLDDAERGFSFR----KD 121 (309)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCEEEEEEECCCHHHCCCCCCCCCC----CC
T ss_conf 99988999989889999999986525882899927798899999863887789997224833203776787567----89
Q ss_pred CEEEEEECC--CCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCC
Q ss_conf 023463021--1347536417862034313426999999998629
Q gi|254780170|r 126 GQGFIMHKK--KGISSVSQLSGASICVQAGTTTELTLADYFKAHN 168 (342)
Q Consensus 126 gq~~lVrk~--~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~ 168 (342)
|. +=.|-| .+++. .| .-.+.+|..|.+.|...|
T Consensus 122 gp-LDMRMd~~~~~tA-~~--------iln~~se~eL~~I~~~yG 156 (309)
T PRK00050 122 GP-LDMRMDPTRGLSA-AE--------VVNTYSEEDLARIFKTYG 156 (309)
T ss_pred CC-CCCCCCCCCCCCH-HH--------HHHHCCHHHHHHHHHHHC
T ss_conf 98-5312268899889-99--------987389999999999966
No 223
>PRK02145 consensus
Probab=26.84 E-value=47 Score=14.29 Aligned_cols=19 Identities=11% Similarity=0.184 Sum_probs=7.5
Q ss_pred CHHHHHHHHHCCCEEEEEE
Q ss_conf 9899999987396029982
Q gi|254780170|r 178 RVEEIDAAYRAHRCDAYTG 196 (342)
Q Consensus 178 ~~~~a~~al~~Gr~DA~~~ 196 (342)
+.++...++..|.++|++.
T Consensus 212 s~~di~~~~~~~~~~av~~ 230 (257)
T PRK02145 212 SLQHLADGITEGHADAVLA 230 (257)
T ss_pred CHHHHHHHHHHCCCCEEEE
T ss_conf 9999999998089848765
No 224
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=26.75 E-value=48 Score=14.28 Aligned_cols=70 Identities=16% Similarity=0.219 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHCCCHHH
Q ss_conf 27775799998877443311-2123301520898862267177887623588765033379986799999997186999
Q gi|254780170|r 231 IQGDTEWYNIVSWTHYAMVT-AEELGITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLTKDWTYRIIRHMGNYGE 308 (342)
Q Consensus 231 r~gD~~w~d~V~W~~~ali~-Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~~~~~~~~i~~vGNYge 308 (342)
.++..-|...++....++-. -|+.|++.+.||.+.-+..+..+.+ .+.+.||++++=.+..+...||=+-
T Consensus 217 ~~g~~v~~~~~~~~~~~~~~~L~~~gl~~~dId~~v~HQ~n~~~~~--------~v~~~lgl~~ek~~~~~~~~GNt~s 287 (327)
T PRK05963 217 QDGRAVFTEAVRMMTGASQNVLASAAMLPQDIDRFFPHQANARIVD--------KVCETLGIPRAKAASTIETYGNSSA 287 (327)
T ss_pred ECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEECCCCHHHHH--------HHHHHCCCCHHHHHHHHHHHCCHHH
T ss_conf 1749999999985299999999984998222888998679989999--------9999829797870302751392488
No 225
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR; InterPro: IPR012704 At least five distinct pathways exist for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR which is, in most cases, divergently transcribed from the operon that encodes the genes involved in the methylcitric acid cycle of propionate catabolism. This protein is required for the expression of the proteins involved in this pathway . 2-methylcitric acid, an intermediate in this pathway, has been proposed to be a co-activator of PrpR .; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0019629 propionate catabolic process 2-methylcitrate cycle, 0005737 cytoplasm.
Probab=26.69 E-value=35 Score=15.14 Aligned_cols=124 Identities=19% Similarity=0.216 Sum_probs=80.6
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCCC---H-HHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 99999999679822025998143100---2-6774396279981243253201102784353223440234630211347
Q gi|254780170|r 63 FCRALSSAIFDDPSKIQYLPLNAKER---F-LALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGIS 138 (342)
Q Consensus 63 l~raiAaal~gd~~kVe~v~~~~~~r---f-~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~ 138 (342)
|-+.|+. -|.+.-.|+-+.+-|.+. | ..|.+-++|+++++=|-- +=++-..|-| +++=+.+|..
T Consensus 18 Lf~Di~~-Efd~~A~i~~I~lGFe~aV~~Ir~~l~~ErcD~vvagGSNg----AYLksRLslP-------v~~i~~~GFD 85 (658)
T TIGR02329 18 LFRDIAP-EFDHRANITPIQLGFEEAVEEIRQRLAAERCDVVVAGGSNG----AYLKSRLSLP-------VIVIKATGFD 85 (658)
T ss_pred HHHHHHH-CCCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCEEEECCCCH----HHHCCCCCCC-------EEEECCCCHH
T ss_conf 8887653-10374554033303789999999985137997798678540----3221578877-------4785787414
Q ss_pred CHHHHC-----CCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHH---HHHHHHHCCCEEEEEECC
Q ss_conf 536417-----862034313426999999998629985078747989---999998739602998250
Q gi|254780170|r 139 SVSQLS-----GASICVQAGTTTELTLADYFKAHNMKYHPIVFERVE---EIDAAYRAHRCDAYTGDI 198 (342)
Q Consensus 139 s~~dL~-----G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~---~a~~al~~Gr~DA~~~D~ 198 (342)
-+..|+ -.+|+|++-.++-..+..|-+..++.+....|-+.+ .++.+|.+--+.++++-+
T Consensus 86 ~m~ALArAr~~a~~igvvT~~~t~p~~~~Fq~~f~l~~~~r~y~t~eDAr~~v~~Lra~G~~~vVG~G 153 (658)
T TIGR02329 86 VMQALARARRIASRIGVVTYQDTVPALREFQKAFNLDIEQRSYVTEEDARSCVNDLRASGIEVVVGAG 153 (658)
T ss_pred HHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 89999872000331046742788467999999863416887504677899999999768975988765
No 226
>PRK11814 cysteine desulfurase activator complex subunit SufB; Provisional
Probab=26.67 E-value=27 Score=15.87 Aligned_cols=177 Identities=15% Similarity=0.204 Sum_probs=88.3
Q ss_pred CCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHC-CCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEE
Q ss_conf 98801509999999999679822025998143100267743-96279981243253201102784353223440234630
Q gi|254780170|r 54 GDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQS-KQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMH 132 (342)
Q Consensus 54 G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~s-G~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVr 132 (342)
.-+.|+.=|+.|.|.+.-. +| +| --.-|+.|+.. .+.. --.|-... ...+||...+||....
T Consensus 31 ~~~kGL~e~~V~~IS~~k~-EP---~W---ml~~RLkA~~~~~~~~----~P~W~~~~--~~~id~~~i~yY~~P~---- 93 (484)
T PRK11814 31 ELPKGLNEDVIRLISAKKN-EP---EW---MLEWRLKAYRHWLTME----EPHWAKLH--YPPIDYQDISYYSAPK---- 93 (484)
T ss_pred CCCCCCCHHHHHHHHCCCC-CC---HH---HHHHHHHHHHHHHHCC----CCCCCCCC--CCCCCHHHEEEEECCC----
T ss_conf 2789999999999860408-87---89---9999999999986089----99998889--9877714648862445----
Q ss_pred CCCCCCCH---------------------HHHCCCCEEEEECCCH-HHHHHHHHHHCCCCCCEE--EECCHHHHHHHHHC
Q ss_conf 21134753---------------------6417862034313426-999999998629985078--74798999999873
Q gi|254780170|r 133 KKKGISSV---------------------SQLSGASICVQAGTTT-ELTLADYFKAHNMKYHPI--VFERVEEIDAAYRA 188 (342)
Q Consensus 133 k~~~i~s~---------------------~dL~G~~I~v~~GTT~-e~~l~~~~~~~~~~~~~v--~~~~~~~a~~al~~ 188 (342)
.....+++ +.|.|..|=++-.|.+ ..++++.+++.|.=+... ....+++.+..|.
T Consensus 94 ~~~~~~s~devp~ei~~tf~kLGIp~~e~k~Lagv~vda~~dS~~V~~~~~~~l~~~GVIf~~~~~A~~~hpeLVkkyl- 172 (484)
T PRK11814 94 CKSKPKSLDEVDPELLETFEKLGIPLREQKRLAGVAVDAVFDSVSVATTFKEKLAEAGVIFCSISEAIQEHPELVKKYL- 172 (484)
T ss_pred CCCCCCCHHHCCHHHHHHHHHHCCCHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHH-
T ss_conf 5566455334589999999883886778775236524322052012355689998688599669999999899999998-
Q ss_pred CCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCC-CCEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 96029982504799999836780010025644423-7101000277757999988774433112123
Q gi|254780170|r 189 HRCDAYTGDISALYALKLTNDRPSEHVILPDIISK-SPLAPAIIQGDTEWYNIVSWTHYAMVTAEEL 254 (342)
Q Consensus 189 Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~isk-EPlg~avr~gD~~w~d~V~W~~~ali~Aee~ 254 (342)
|++ +-.+.--++++-+.+=+.+-++-+|.-... .||-..+|-++..-..+ -..||.|||-
T Consensus 173 g~~--v~~~d~kfaALn~A~~s~G~FvYVPkgV~v~~pL~~~f~i~~~~~~qf----~htLIIaEeg 233 (484)
T PRK11814 173 GSV--VPVNDNFFAALNSAVFSDGSFVYIPKGVRCPMELSTYFRINAANTGQF----ERTLIIADEG 233 (484)
T ss_pred HCC--CCCCCCHHHHHHHHHHCCCEEEEECCCEEECCEEEEEEEECCCCCCEE----EEEEEEECCC
T ss_conf 465--687510889988998639769996698267536799999857765400----1579996278
No 227
>CHL00085 ycf24 putative ABC transporter
Probab=26.51 E-value=28 Score=15.70 Aligned_cols=184 Identities=15% Similarity=0.219 Sum_probs=94.6
Q ss_pred CEEECC---CCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCC-CEEEEEECCCCCCCCHHCCCCCCCCCC
Q ss_conf 306889---8988015099999999996798220259981431002677439-627998124325320110278435322
Q gi|254780170|r 47 FAEVKA---NGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSK-QIDILSRNTDWTLLREISLGLAFRPIT 122 (342)
Q Consensus 47 fs~~d~---~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG-~vDil~~~~T~T~~Rd~~~~v~Fs~~~ 122 (342)
++|.++ .--+.|++-|+.|.|.+.. ++| +| --.-|..||..= +. .--.|-... ...++|-..+
T Consensus 22 ygf~~~i~~~~~~~GL~e~~V~~IS~~k-~EP---~W---ml~~RLkAl~~~~~~----~~P~W~~~~--~~~id~~~i~ 88 (485)
T CHL00085 22 YGFSTSIETERFPKGLNEDIVKLISKKK-NEP---KF---LLIFRLKAYKKWKKM----KQPDWAFLK--YPEIDYQDII 88 (485)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCC-CCC---HH---HHHHHHHHHHHHHCC----CCCCCCCCC--CCCCCCHHEE
T ss_conf 8887760301379999999999998443-867---99---999999999997449----999998899--9978841057
Q ss_pred CCCCEEEEEECCCCCCCHHH---------------------HCCCCEEEEECCCH-HHHHHHHHHHCCCCCCEE--EECC
Q ss_conf 34402346302113475364---------------------17862034313426-999999998629985078--7479
Q gi|254780170|r 123 YFDGQGFIMHKKKGISSVSQ---------------------LSGASICVQAGTTT-ELTLADYFKAHNMKYHPI--VFER 178 (342)
Q Consensus 123 ~~dgq~~lVrk~~~i~s~~d---------------------L~G~~I~v~~GTT~-e~~l~~~~~~~~~~~~~v--~~~~ 178 (342)
||.-.. .....+++++ |.|..|-++-.|.+ -.++++.+++.|.=+... ....
T Consensus 89 yy~~p~----~~~~~~s~devp~eik~tfekLGip~~e~k~l~gv~vda~~dS~~V~~~~~~~L~~~GVIf~~~~~A~~~ 164 (485)
T CHL00085 89 YYSAPK----LKKKLNSLDEVDPELLSTFEKLGIPLNEQKRLSNVAVDAVFDSVSIGTTFKEELIKAGVIFCSISEAINK 164 (485)
T ss_pred EEECCC----CCCCCCCHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHEEECCEEEEECHHHHHHHCCEEEECHHHHHHH
T ss_conf 775256----4456679366799999999871883566666420012002050553201278999799599568999987
Q ss_pred HHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCC-CCEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999987396029982504799999836780010025644423-7101000277757999988774433112123
Q gi|254780170|r 179 VEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISK-SPLAPAIIQGDTEWYNIVSWTHYAMVTAEEL 254 (342)
Q Consensus 179 ~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~isk-EPlg~avr~gD~~w~d~V~W~~~ali~Aee~ 254 (342)
+++.+..|. |++ +-.+.--++++-+.+-+.+-++-+|.-..- .|+-..+|-++.....+ -..||.|||-
T Consensus 165 ~pelv~ky~-g~~--v~~~d~kfaALn~A~~sgG~FvYVPkgV~v~~Pl~~~f~i~~~~~~qf----~htLIIaeeg 234 (485)
T CHL00085 165 YPELIKKYL-GSV--VPIGDNYFAALNSAVFSDGSFCYIPKDTKCPLELSTYFRINNEESGQF----ERTLIIADEN 234 (485)
T ss_pred HHHHHHHHH-HCC--CCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEEECCCCCCCC----CEEEEEECCC
T ss_conf 089999986-154--388744689999998459769984077111552079999757756777----4479996579
No 228
>KOG2951 consensus
Probab=26.43 E-value=48 Score=14.24 Aligned_cols=63 Identities=21% Similarity=0.104 Sum_probs=41.8
Q ss_pred CCCCHHHHCCCCEEEEECCCH-HHHH----HHHHHHCCCCC-CEEEECCHHHHHHHHHCCCEEEEEECC
Q ss_conf 347536417862034313426-9999----99998629985-078747989999998739602998250
Q gi|254780170|r 136 GISSVSQLSGASICVQAGTTT-ELTL----ADYFKAHNMKY-HPIVFERVEEIDAAYRAHRCDAYTGDI 198 (342)
Q Consensus 136 ~i~s~~dL~G~~I~v~~GTT~-e~~l----~~~~~~~~~~~-~~v~~~~~~~a~~al~~Gr~DA~~~D~ 198 (342)
..++-..|+..-||...|+.. |..+ +...+.-..+. -...+.+....+..+.+|+||||.--.
T Consensus 149 ~vs~~~~L~kAlv~~e~g~~~~~~~~~~~~~r~~~~~~~~~~g~r~~gs~a~~lc~VAsG~~Day~e~g 217 (279)
T KOG2951 149 RVSSQTKLSKALVATEIGLLRDEATLDKAYSRLYSKVGAKAHGLRSIGSAALNLCMVASGAADAYYEFG 217 (279)
T ss_pred EECCHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHCCCCCEEEECC
T ss_conf 220204664333354045345688899899999998536653145505789999999707741011268
No 229
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=26.07 E-value=49 Score=14.20 Aligned_cols=29 Identities=7% Similarity=-0.022 Sum_probs=17.3
Q ss_pred CCEEEECCHHHHHHHHHCCCEEEEEECCH
Q ss_conf 50787479899999987396029982504
Q gi|254780170|r 171 YHPIVFERVEEIDAAYRAHRCDAYTGDIS 199 (342)
Q Consensus 171 ~~~v~~~~~~~a~~al~~Gr~DA~~~D~s 199 (342)
+.++.|+..+++++++.+|...+.+...+
T Consensus 215 i~ivg~D~~~~~~~~i~~g~l~~~~~~~p 243 (273)
T cd06309 215 IKIVSIDGTKDAFQAMADGKLNATVECNP 243 (273)
T ss_pred EEEEEECCCHHHHHHHHCCCCEEEEECCH
T ss_conf 69999899999999987699719997839
No 230
>pfam07996 T4SS Type IV secretion system proteins. Members of this family are components of the type IV secretion system. They mediate intracellular transfer of macromolecules via a mechanism ancestrally related to that of bacterial conjugation machineries.
Probab=25.92 E-value=39 Score=14.86 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=11.4
Q ss_pred CHHHHHHHHHHHHHHHHHHC
Q ss_conf 91389999999999998401
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSF 20 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~ 20 (342)
|||+++..++++.++...+.
T Consensus 1 Mkk~~~~~~~~~~l~~~~~a 20 (217)
T pfam07996 1 MKKKLIILALALALLAASPA 20 (217)
T ss_pred CCHHHHHHHHHHHHHCCCHH
T ss_conf 93379999999998477777
No 231
>COG3636 Predicted transcriptional regulator [Transcription]
Probab=25.84 E-value=44 Score=14.47 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=33.3
Q ss_pred EEECCCCCHHHHHHHHHHH----HHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCC
Q ss_conf 1000277757999988774----4331121233015208988622671778876235
Q gi|254780170|r 227 APAIIQGDTEWYNIVSWTH----YAMVTAEELGITQKNINQVSKDTTNPDVQRFLGI 279 (342)
Q Consensus 227 g~avr~gD~~w~d~V~W~~----~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~ 279 (342)
.-++-.||+++....+-++ .---.|++-|+++..+...+....||.+.-+|-+
T Consensus 28 ~~~le~~d~a~i~~alg~var~~GMsqvA~~aGlsRe~LYkaLS~~GNPtf~Til~V 84 (100)
T COG3636 28 NAALEEGDPALIAAALGVVARSRGMSQVARKAGLSREGLYKALSPGGNPTFDTILAV 84 (100)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 999974899999999999998657899999949669999998478999758999999
No 232
>PRK06922 hypothetical protein; Provisional
Probab=25.77 E-value=50 Score=14.17 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=14.0
Q ss_pred HHHHHHCCCHHHHHHHHCCCCC
Q ss_conf 9999971869998788648889
Q gi|254780170|r 297 YRIIRHMGNYGEMFDRNLGNQS 318 (342)
Q Consensus 297 ~~~i~~vGNYgei~~rnlg~~s 318 (342)
++||.++----|=|.-||-+.-
T Consensus 634 ~~Ii~~~~YLqEGY~~hL~~Ki 655 (679)
T PRK06922 634 VNIVQAMNYLQDGYTNHLSEKI 655 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHCE
T ss_conf 1318999999888998643120
No 233
>pfam02602 HEM4 Uroporphyrinogen-III synthase HemD. This family consists of uroporphyrinogen-III synthase HemD EC:4.2.1.75 also known as Hydroxymethylbilane hydrolyase (cyclizing) from eukaryotes, bacteria and archaea. This enzyme catalyses the reaction: Hydroxymethylbilane <= uroporphyrinogen-III + H(2)O. Some members of this family are multi-functional proteins possessing other enzyme activities related to porphyrin biosynthesis, with pfam00590, however the aligned region corresponds with the uroporphyrinogen-III synthase EC:4.2.1.75 activity only. Uroporphyrinogen-III synthase is the fourth enzyme in the heme pathway. Mutant forms of the Uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria in humans a recessive inborn error of metabolism also known as Gunther disease.
Probab=25.49 E-value=50 Score=14.13 Aligned_cols=58 Identities=22% Similarity=0.265 Sum_probs=43.1
Q ss_pred HHCCCCEEEEECCCHHHHHHHHHHHCCCCCC-EEEECC------HHHHHHHHHCCCEEEEEECCH
Q ss_conf 4178620343134269999999986299850-787479------899999987396029982504
Q gi|254780170|r 142 QLSGASICVQAGTTTELTLADYFKAHNMKYH-PIVFER------VEEIDAAYRAHRCDAYTGDIS 199 (342)
Q Consensus 142 dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~-~v~~~~------~~~a~~al~~Gr~DA~~~D~s 199 (342)
.+.+++|....|--....|.+.++..|.+++ ++.|++ ..+....+..+++|+++--.+
T Consensus 111 ~~~~~~il~~~g~~~~~~L~~~L~~~g~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~i~ftS~ 175 (229)
T pfam02602 111 LLAGKRVLLLRGNLGRDDLAEALREAGAKVDEVVVYRTVPPAELPEELRELLRAGEIDAVVFTSP 175 (229)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEEEEEEECCCCCHHHHHHHHHHCCCCEEEECCH
T ss_conf 26898699972777736789999977986789988886369877699999998289989998799
No 234
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=24.91 E-value=31 Score=15.42 Aligned_cols=126 Identities=11% Similarity=0.059 Sum_probs=59.7
Q ss_pred EECCHHHHHHHHHCCCEEEEEECCHHHHHHH-HHCCCCHHHCCCCCCCCCCCEEEECCCCC-HHHHHHHHHHHHHHHHHH
Q ss_conf 7479899999987396029982504799999-83678001002564442371010002777-579999887744331121
Q gi|254780170|r 175 VFERVEEIDAAYRAHRCDAYTGDISALYALK-LTNDRPSEHVILPDIISKSPLAPAIIQGD-TEWYNIVSWTHYAMVTAE 252 (342)
Q Consensus 175 ~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~-~~~~~p~~~~il~e~iskEPlg~avr~gD-~~w~d~V~W~~~ali~Ae 252 (342)
.++..+.+.....+|++||+++--..=.++. ...+-|+--..|-+....+...+++--++ +.+ .++--|.+--+..=
T Consensus 92 ~~~~l~~Av~~~~~g~~dalVTaPInK~~i~~aG~~f~GHTE~La~~~~~~~~~Mml~~~~~~~L-rV~l~T~HipLk~V 170 (329)
T PRK01909 92 VLDLLDAAIDGALAGRYDAIVTAPLQKSTINDAGVPFTGHTEYLAERTHTPRVVMMLAGTGERPL-RVALATTHLPLRDV 170 (329)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCE-EEEEECCCCCHHHH
T ss_conf 99999999999975988899977128999986799989878999998389975999986699837-99984566119999
Q ss_pred HHHCCHHHHHHHHHCCCCHHHHHHHC----------CCCCCCCHHHCCCCH-HHHHHHHHH
Q ss_conf 23301520898862267177887623----------588765033379986-799999997
Q gi|254780170|r 253 ELGITQKNINQVSKDTTNPDVQRFLG----------IDKSSNIGEALGLTK-DWTYRIIRH 302 (342)
Q Consensus 253 e~git~~nv~~~~~~s~~p~i~r~lg----------~~~~~~~g~~lgl~~-~~~~~~i~~ 302 (342)
-.-||..++.+..+ ..+-..+|.+| +.|..+-+-.+|-+. ++..-+|+.
T Consensus 171 ~~~It~~~I~~~i~-~~~~~l~~~fgi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PAI~~ 230 (329)
T PRK01909 171 SAALTIDGLVETLA-IIDRDLRRDFGLAAPRILVTGLNPHAGENGYLGREEIDVIEPALAR 230 (329)
T ss_pred HHHHCHHHHHHHHH-HHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 98423479999999-9999999844888985999950898765566633778889999999
No 235
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=24.55 E-value=33 Score=15.29 Aligned_cols=57 Identities=14% Similarity=0.218 Sum_probs=31.2
Q ss_pred CCCCCEEEEEECCCCCCCHHHHCCCCEEEEECC--CHHHHHHHHHHHCCCCCCEEEECCHHHHH
Q ss_conf 234402346302113475364178620343134--26999999998629985078747989999
Q gi|254780170|r 122 TYFDGQGFIMHKKKGISSVSQLSGASICVQAGT--TTELTLADYFKAHNMKYHPIVFERVEEID 183 (342)
Q Consensus 122 ~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GT--T~e~~l~~~~~~~~~~~~~v~~~~~~~a~ 183 (342)
-||.|.--+|-| =..+.-.|+||||+|.-.| -.+. |...+.++| ++++.+.+.++.+
T Consensus 159 aY~~g~~tlvDk--lmGTalSLKGKTV~VTGASG~LG~a-L~k~l~~~G--AKVIalTs~~~~i 217 (410)
T PRK07424 159 AYYCGTFTLVDK--LMGTALSLKGKTVAVTGASGTLGQA-LLKELHQQG--AKVIALTSNSDKI 217 (410)
T ss_pred CEEEEEEHHHHH--HHCCEEECCCCEEEEECCCCHHHHH-HHHHHHHCC--CEEEEEECCCCCC
T ss_conf 614422202555--5210130168679995477377899-999999779--9899993589865
No 236
>PRK01742 tolB translocation protein TolB; Provisional
Probab=23.80 E-value=54 Score=13.93 Aligned_cols=58 Identities=12% Similarity=0.267 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEEC----CCCCCEEECCCCCEEEEHHHHHHHHHHHH
Q ss_conf 913899999999999984012442168999857949998717----89883068898988015099999999996
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNASILGDIKKRGFLKCGINT----GLVGFAEVKANGDWKGFDVDFCRALSSAI 71 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a~tLd~Vk~rG~L~vGv~~----~~ppfs~~d~~G~~~GfDVDl~raiAaal 71 (342)
|.|+++..+++++++.+++.+.+.=.+ +++=|+.. ..+||...+. ..-|+.+-|++.+
T Consensus 3 m~~~~~~~~~~l~~~~~~~~a~a~L~I-------~It~G~~~~~pIAi~pF~~~~~------~~~~i~~vI~~DL 64 (430)
T PRK01742 3 LLKRLVSVFAVLFAVISNAFAGDEVRI-------VIDEGVDGARPIAVVPFKWNGS------APEDIAKIIAADL 64 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEE-------EEECCCCCCCCEEEECCCCCCC------CHHHHHHHHHHHH
T ss_conf 699999999999999877850575599-------9945767740459925367897------6678999998777
No 237
>pfam08671 SinI Anti-repressor SinI. SinR is a pleiotropic regulator of several late growth processes. It is a tetrameric DNA binding protein whose activity is down-regulated thorough the formation of a SinI:SinR protein complex. When complexed with SinI, the SinR tetramer is disrupted such that is no longer able to bind DNA.
Probab=23.79 E-value=54 Score=13.93 Aligned_cols=26 Identities=23% Similarity=0.610 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 757999988774433112123301520898862
Q gi|254780170|r 234 DTEWYNIVSWTHYAMVTAEELGITQKNINQVSK 266 (342)
Q Consensus 234 D~~w~d~V~W~~~ali~Aee~git~~nv~~~~~ 266 (342)
|++|.++|. +|-+.||+-..+.+++.
T Consensus 2 D~EW~~Li~-------EA~~~Gis~ee~r~fL~ 27 (30)
T pfam08671 2 DQEWVQLIK-------EAMEAGLSKEEFREFLE 27 (30)
T ss_pred CHHHHHHHH-------HHHHCCCCHHHHHHHHH
T ss_conf 579999999-------99981467999999985
No 238
>pfam07659 DUF1599 Domain of Unknown Function (DUF1599).
Probab=23.70 E-value=51 Score=14.08 Aligned_cols=18 Identities=22% Similarity=0.554 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 775799998877443311
Q gi|254780170|r 233 GDTEWYNIVSWTHYAMVT 250 (342)
Q Consensus 233 gD~~w~d~V~W~~~ali~ 250 (342)
-++++.++||..++|||+
T Consensus 43 i~~~f~~iiNY~i~aLIq 60 (61)
T pfam07659 43 IDSEFIDIINYSIMALIQ 60 (61)
T ss_pred CCHHHHHHHHHHHHHHHH
T ss_conf 515799999999999980
No 239
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=23.61 E-value=54 Score=13.91 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=14.0
Q ss_pred HHHHHCCHHHHHHHHHCCCCHHHHHHH
Q ss_conf 212330152089886226717788762
Q gi|254780170|r 251 AEELGITQKNINQVSKDTTNPDVQRFL 277 (342)
Q Consensus 251 Aee~git~~nv~~~~~~s~~p~i~r~l 277 (342)
||..||++.-|.++.....+|.+..++
T Consensus 22 A~~aGvs~~~Is~iE~G~~~~~l~~l~ 48 (58)
T TIGR03070 22 ADLAGVGLRFIRDIEKGKPTVRLDKVL 48 (58)
T ss_pred HHHHCCCHHHHHHHHCCCCCCCHHHHH
T ss_conf 988199899999997899988899999
No 240
>TIGR00392 ileS isoleucyl-tRNA synthetase; InterPro: IPR002301 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Isoleucyl-tRNA synthetase (6.1.1.5 from EC) is an alpha monomer that belongs to class Ia. The enzyme, isoleucyl-transfer RNA synthetase, activates not only the cognate substrate L-isoleucine but also the minimally distinct L-valine in the first, aminoacylation step. Then, in a second, "editing" step, the synthetase itself rapidly hydrolyzes only the valylated products , as shown from the crystal structures. ; GO: 0000166 nucleotide binding, 0004822 isoleucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006428 isoleucyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=23.59 E-value=54 Score=13.94 Aligned_cols=90 Identities=16% Similarity=0.274 Sum_probs=56.2
Q ss_pred HHHHHHHHCCEE-EEEEECCCCCCEEECCCCCEE------EEHHHH-HHHHHHHHCCCCCEEEEEECCC-CCCHHHHHCC
Q ss_conf 168999857949-998717898830688989880------150999-9999999679822025998143-1002677439
Q gi|254780170|r 25 SILGDIKKRGFL-KCGINTGLVGFAEVKANGDWK------GFDVDF-CRALSSAIFDDPSKIQYLPLNA-KERFLALQSK 95 (342)
Q Consensus 25 ~tLd~Vk~rG~L-~vGv~~~~ppfs~~d~~G~~~------GfDVDl-~raiAaal~gd~~kVe~v~~~~-~~rf~aL~sG 95 (342)
-.+.+-+++|.| ..+.-.---||-++- ..|+ .--|.+ -+.|...++....||+|+|-.. .+||..--.+
T Consensus 434 ~I~~~L~~~~~Ll~~e~i~H~YPhcWRt--k~P~IYRAt~QWF~~~D~~~~k~~~L~~i~~v~W~P~~~k~~R~~~~~~n 511 (938)
T TIGR00392 434 IIIEQLKDKGLLLKAEKITHSYPHCWRT--KTPVIYRATEQWFIKIDEKKIKDQMLEEIKKVKWVPEWGKEGRFKNWLEN 511 (938)
T ss_pred HHHHHHHHCCCEEEEEEEECCCCCCCCC--CCCEEEECCCCCEEECCHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHC
T ss_conf 9999984269778876655058770778--98457204722146635477789999862832761463221467887611
Q ss_pred CEEEEEECCCCCCCCHHCCCCCCCCCCCCC
Q ss_conf 627998124325320110278435322344
Q gi|254780170|r 96 QIDILSRNTDWTLLREISLGLAFRPITYFD 125 (342)
Q Consensus 96 ~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~d 125 (342)
+-| |+.+|.+.=|+- -|.+|+
T Consensus 512 ~~D-------WcISRQR~WG~P--IP~w~~ 532 (938)
T TIGR00392 512 RKD-------WCISRQRYWGVP--IPVWYC 532 (938)
T ss_pred CCC-------CEEECCCCCCCC--CEEEEE
T ss_conf 676-------526335625897--406886
No 241
>COG5510 Predicted small secreted protein [Function unknown]
Probab=23.56 E-value=54 Score=13.90 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=13.0
Q ss_pred CHHHHHHH-HHHHHHHHHHHCCCCCHHHHHHHHCC
Q ss_conf 91389999-99999999840124421689998579
Q gi|254780170|r 1 MYKDFFVS-ILCLIILFFTSFSTNASILGDIKKRG 34 (342)
Q Consensus 1 M~K~~l~~-~l~l~~~~~~~~aa~a~tLd~Vk~rG 34 (342)
|||..++. ++++...+.++|-.....=++|+.-|
T Consensus 2 mk~t~l~i~~vll~s~llaaCNT~rG~G~DIq~~G 36 (44)
T COG5510 2 MKKTILLIALVLLASTLLAACNTMRGAGKDIQSGG 36 (44)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 04899999999999999988663002236488888
No 242
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=23.34 E-value=55 Score=13.88 Aligned_cols=65 Identities=15% Similarity=0.186 Sum_probs=44.5
Q ss_pred HHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCH--HHHHCCCEEEEEE
Q ss_conf 6899985794999871789883068898988015099999999996798220259981431002--6774396279981
Q gi|254780170|r 26 ILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERF--LALQSKQIDILSR 102 (342)
Q Consensus 26 tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf--~aL~sG~vDil~~ 102 (342)
.+-..++.+....+++-+| |+..=.++|.++.+|++++.. -+.+.+++-.++ .+|..+.+|+.-.
T Consensus 18 ~l~~a~~~~~ev~alsfdY---------GQrh~~Ele~A~~iak~lgv~---~~iid~~~~~~~~~saLtd~~~~vp~~ 84 (222)
T COG0603 18 CLAWAKKEGYEVHALTFDY---------GQRHRKELEAAKELAKKLGVP---HHIIDVDLLGEIGGSALTDDSIDVPKY 84 (222)
T ss_pred HHHHHHHCCCEEEEEEEEC---------CCCCHHHHHHHHHHHHHCCCC---EEEECHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 9999996098899997507---------898689999999999981998---289541687535888675888636666
No 243
>PRK09726 DNA-binding transcriptional regulator HipB; Provisional
Probab=23.19 E-value=54 Score=13.93 Aligned_cols=29 Identities=24% Similarity=0.477 Sum_probs=19.1
Q ss_pred HHHHHHHCCHHHHHHHHHCCCCHHHHHHH
Q ss_conf 11212330152089886226717788762
Q gi|254780170|r 249 VTAEELGITQKNINQVSKDTTNPDVQRFL 277 (342)
Q Consensus 249 i~Aee~git~~nv~~~~~~s~~p~i~r~l 277 (342)
-.|+..||.|+.|..+..+...+.+..|+
T Consensus 30 ~lA~~vGi~Q~TiS~~E~~p~~~~leTLF 58 (88)
T PRK09726 30 ELAKKIGIKQATISNFENNPDNTTLTTFF 58 (88)
T ss_pred HHHHHHCCCHHHHHHHHCCCCCCCHHHHH
T ss_conf 99998197499999997599878699999
No 244
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=23.11 E-value=56 Score=13.85 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=10.1
Q ss_pred CCHHHHHHHHHCCCEEEEEE
Q ss_conf 79899999987396029982
Q gi|254780170|r 177 ERVEEIDAAYRAHRCDAYTG 196 (342)
Q Consensus 177 ~~~~~a~~al~~Gr~DA~~~ 196 (342)
.+.++...+|..+.+|+++.
T Consensus 207 ~s~~di~~~l~~~~i~gv~~ 226 (253)
T PRK02083 207 GNLEHFAEAFTEGGADAALA 226 (253)
T ss_pred CCHHHHHHHHHHCCCEEEEE
T ss_conf 99999999998679809987
No 245
>TIGR00543 isochor_syn isochorismate synthases; InterPro: IPR004561 Isochorismate synthase (5.4.99.6 from EC) catalyses the conversion of chorismate to isochorismate, the first step in the biosynthesis of both the respiratory chain component menaquinone (MK, vitamin K2) and phylloquinone (vitamin K1). In bacteria, isochorismate is a precursor of siderophores enterobactin (via the 2,3-dihydroxybenzoate (DHB) precursor) , amonabactins and salicylic acid . Most aerobic bacteria secrete siderophores to facilitate iron acquisition . Siderophores are iron-chelating agents which are low molecular weight compounds that specifically bind ferric iron and mediate iron uptake into the cell by recognition of specific membrane receptor proteins and transport systems. In plants, isochorismate synthase is required for defence against pathogens. Salicylic acid synthesised via the pathway using isochorismate synthase is responsible for both local and systemic acquired resistance in plants . In Escherichia coli and Bacillus subtilis, two distinct isochorismate synthase isoenzymes, MenF and EntC /DhbC , are known to be involved in MK and siderophore biosynthesis pathways, respectively . MenF and EntC are differentially regulated and isochorismate synthesised by EntC is mainly channelled into enterobactin synthesis, whereas isochorismate synthesised by MenF is mainly channelled into menaquinone synthesis . The catalytic/chorismate binding domain characteristic of members of this group is related to other chorismate binding enzymes : component I of anthranilate synthase, para-aminobenzoate synthase, and aminodeoxychorismate synthase (please see PIRSF001373 from PIRSF and PIRSF001374 from PIRSF). There is a significant heterogeneity in the length and sequence of the N-terminal region of members of this group. Partially on the basis of the N-terminal region, the group can be divided into subfamilies, with the enzymes involved in DHB (enterobactin precursor) biosynthesis (EntC/DhbC/VibC) forming a distinct subfamily, and the enzymes involved in MK biosynthesis (MenF) forming two groups (E. coli and B. subtilis types).; GO: 0008909 isochorismate synthase activity, 0009058 biosynthetic process.
Probab=23.11 E-value=56 Score=13.85 Aligned_cols=93 Identities=22% Similarity=0.361 Sum_probs=48.7
Q ss_pred CCCHHHCCCCCCCCC--CCEEEECCCCC-HHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCC
Q ss_conf 780010025644423--71010002777-57999988-774433112123301520898862267177887623588765
Q gi|254780170|r 209 DRPSEHVILPDIISK--SPLAPAIIQGD-TEWYNIVS-WTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFLGIDKSSN 284 (342)
Q Consensus 209 ~~p~~~~il~e~isk--EPlg~avr~gD-~~w~d~V~-W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~lg~~~~~~ 284 (342)
+|-.+|.++-|.|.+ +|++--+--.. ++.+..-+ |=++.-|.|--. + .+..+-.+-+.|. ||.-
T Consensus 215 Kn~~Eh~~Vve~I~~~L~~~~~~~~~~~~p~~~~l~~vqHL~t~i~a~l~-------~---~~~~~~~~l~~LH--PTPA 282 (371)
T TIGR00543 215 KNLREHQLVVEDIRRRLEPICESLDVSEAPKLLKLANVQHLYTPISARLK-------D---EDISLLDLLKQLH--PTPA 282 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEEEECCCCC-------C---CCCCHHHHHHHHC--CCHH
T ss_conf 12456688899999987403504113787640101350661001125798-------7---6468799999858--8410
Q ss_pred CHHHCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCC
Q ss_conf 0333799867999999971869998788648889998
Q gi|254780170|r 285 IGEALGLTKDWTYRIIRHMGNYGEMFDRNLGNQSELK 321 (342)
Q Consensus 285 ~g~~lgl~~~~~~~~i~~vGNYgei~~rnlg~~s~l~ 321 (342)
+| |+|..-|+..|+++ |-|||.+=.+ |+|
T Consensus 283 Vg---G~P~e~A~~~Ir~~----E~f~RG~Yaa-p~G 311 (371)
T TIGR00543 283 VG---GLPREEALDLIREH----EPFDRGLYAA-PLG 311 (371)
T ss_pred CC---CCCHHHHHHHHHHH----CCCCCCCCCE-EEC
T ss_conf 05---78889999998742----5876654231-310
No 246
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=22.66 E-value=57 Score=13.79 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 91389999999999998401244
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTN 23 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~ 23 (342)
|+|..+...+++++++.++|+..
T Consensus 3 ~~~~~~i~~lll~lllva~C~~s 25 (310)
T COG4594 3 MKKTAIILTLLLLLLLVAACSSS 25 (310)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 50359999999999999771476
No 247
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=22.57 E-value=53 Score=13.97 Aligned_cols=46 Identities=22% Similarity=0.306 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCH--HHH---HHHHCCEEEEEEECCCCCCEE
Q ss_conf 9138999999999999840124421--689---998579499987178988306
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNAS--ILG---DIKKRGFLKCGINTGLVGFAE 49 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a~--tLd---~Vk~rG~L~vGv~~~~ppfs~ 49 (342)
|+|-+++.+ +++++. +|.+... +.+ -|.+.-.+..|+..+.|+.+.
T Consensus 1 Mrk~~~~~l-~~~lLv--GCsS~~~i~~~~~q~vvm~~s~l~~~Isae~~~l~~ 51 (123)
T COG5633 1 MRKLCLLSL-ALLLLV--GCSSHQEILVNDEQSVVMETSVLIAGISAEKPVLSE 51 (123)
T ss_pred CCEEHHHHH-HHHHHH--CCCCCCCCCCCCCCEEEECCCCEECCCCCCCCEEEE
T ss_conf 930038999-999942--047887752255020340355134141305870266
No 248
>COG1427 Predicted periplasmic solute-binding protein [General function prediction only]
Probab=22.41 E-value=57 Score=13.76 Aligned_cols=146 Identities=16% Similarity=0.163 Sum_probs=71.4
Q ss_pred EEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCC---C-CCCHHHHCCCCEEEEEC
Q ss_conf 2599814310026774396279981243253201102784353223440234630211---3-47536417862034313
Q gi|254780170|r 78 IQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKK---G-ISSVSQLSGASICVQAG 153 (342)
Q Consensus 78 Ve~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~---~-i~s~~dL~G~~I~v~~G 153 (342)
+.++...+.+.-..|.+|+||+.+-.. ....+..+. .+.+-++-..+.. . ++.-...++..|++...
T Consensus 25 ~~v~~~~P~el~~~ll~Grid~a~VSs--~~~~~~~l~-------~l~~~~I~s~g~vlSV~L~s~~~~~~~~~vAvT~~ 95 (252)
T COG1427 25 ERVVKAVPSELNELLLSGRIDAALVSS--VAYAEDDLK-------LLPGLGIASNGKVLSVLLFSNRPLDEGRRVAVTKE 95 (252)
T ss_pred EEEEECCCHHHHHHHHHCCCCEEEECH--HHHHHCCCC-------CCCCCEEEECCCEEEEEEEECCCCCCCCCEECCCC
T ss_conf 278743977889999818262244106--877520312-------27874477558568999984587666764113752
Q ss_pred CCHHHHHH-HHHHHCCCCCCEEEECC-HHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCC-CCCC---CCCCCE-
Q ss_conf 42699999-99986299850787479-89999998739602998250479999983678001002-5644---423710-
Q gi|254780170|r 154 TTTELTLA-DYFKAHNMKYHPIVFER-VEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVI-LPDI---ISKSPL- 226 (342)
Q Consensus 154 TT~e~~l~-~~~~~~~~~~~~v~~~~-~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~i-l~e~---iskEPl- 226 (342)
|-+-..|- -..++.+ +..+.++. ...+-+.++.-.+--.++| .+++.....|..+.. |.+. ++.=|.
T Consensus 96 S~TS~~LLkvL~~~~~--~~~v~~~~~~~~~~~~le~~d~~LlIGD----eAL~~~~~~~~~~~~DLg~~W~eltglpfV 169 (252)
T COG1427 96 SATSVALLKVLLEKLG--ISNVLVETDTTDAEELLEEADGALLIGD----EALRAVYSLPGKLIYDLGELWYELTGLPFV 169 (252)
T ss_pred CHHHHHHHHHHHHHHC--CCCEEEECCCCCHHHHHHCCCCEEEECH----HHHHHHCCCCCCEEHHHHHHHHHHHCCCCE
T ss_conf 0559999999999848--7634542156747677640890388558----988751167882201378899998789954
Q ss_pred --EEECCCCCHHHH
Q ss_conf --100027775799
Q gi|254780170|r 227 --APAIIQGDTEWY 238 (342)
Q Consensus 227 --g~avr~gD~~w~ 238 (342)
-.+.|++++.-.
T Consensus 170 FAv~~sr~~~~~~~ 183 (252)
T COG1427 170 FAVLASRKDKPFYK 183 (252)
T ss_pred EEEEEEECCCCCHH
T ss_conf 78999850687005
No 249
>PRK12696 flgH flagellar basal body L-ring protein; Reviewed
Probab=22.26 E-value=58 Score=13.74 Aligned_cols=18 Identities=11% Similarity=0.226 Sum_probs=11.8
Q ss_pred CHHHHHHHHHHHHHHHHH
Q ss_conf 913899999999999984
Q gi|254780170|r 1 MYKDFFVSILCLIILFFT 18 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~ 18 (342)
|.|+++.++++++++..+
T Consensus 1 mm~~~l~~~~~~~~L~GC 18 (238)
T PRK12696 1 MIRKLLAASCAVLLLSGC 18 (238)
T ss_pred CHHHHHHHHHHHHHHHCC
T ss_conf 958999999999995165
No 250
>PRK05567 inositol-5'-monophosphate dehydrogenase; Reviewed
Probab=22.23 E-value=54 Score=13.91 Aligned_cols=49 Identities=22% Similarity=0.160 Sum_probs=29.6
Q ss_pred ECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEE
Q ss_conf 479899999987396029982504799999836780010025644423710100
Q gi|254780170|r 176 FERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPA 229 (342)
Q Consensus 176 ~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~a 229 (342)
.....+...||..|---.+.+ +.||+ ..+.|+++....-..-|+-.|++
T Consensus 340 i~~sGdi~KAla~GAd~VMlG--s~lAg---t~EsPG~~~~~~G~~~K~YRGMg 388 (486)
T PRK05567 340 IRYSGDIAKALAAGASAVMLG--SMLAG---TEEAPGEVELYQGRSYKSYRGMG 388 (486)
T ss_pred CCCCCHHHHHHHCCCCEEEEC--CHHCC---CCCCCCCEEEECCEEEEEEECCC
T ss_conf 354357999986589889866--12147---76799726847896999971566
No 251
>pfam07437 YfaZ YfaZ precursor. This family contains the precursor of the bacterial protein YfaZ (approximately 180 residues long). Many members of this family are hypothetical proteins.
Probab=21.98 E-value=59 Score=13.71 Aligned_cols=130 Identities=13% Similarity=0.080 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEECCCCCC------EEECCCCCEEEEHHHHHHHHHHHHCCC
Q ss_conf 91389999999999998401244216899985794999871789883------068898988015099999999996798
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNASILGDIKKRGFLKCGINTGLVGF------AEVKANGDWKGFDVDFCRALSSAIFDD 74 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a~tLd~Vk~rG~L~vGv~~~~ppf------s~~d~~G~~~GfDVDl~raiAaal~gd 74 (342)
|||.++.+++.+++++.++.+..- +++.=+.--.+.+|.....++. .+-|.+|...|....+.-.+..-.+.
T Consensus 1 mkk~~~~~a~~l~~~s~~A~A~s~-~~~~g~~~t~~~~~~g~~~~gl~~~g~w~~sd~dg~~~~~gl~~~~~~Gp~~~~- 78 (180)
T pfam07437 1 MAKFRVASVALLLLVALSVNASSF-NLGLGNDYTNTGLGLGTNTDGLAVSGNWIYSDDDGDVAGGGLGMNLPAGPHHAT- 78 (180)
T ss_pred CCHHHHHHHHHHHHHHHHCEEEEE-ECCCCCCEEEEEECCCCCCCCEEEECCEEEECCCCCEECCEEEEECCCCCEEEE-
T ss_conf 903589999999876321057884-224664137774303788875054212657879996732404674056783898-
Q ss_pred CCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCC
Q ss_conf 22025998143100267743962799812432532011027843532234402346302113475364178
Q gi|254780170|r 75 PSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSG 145 (342)
Q Consensus 75 ~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G 145 (342)
.-.+..-+..++. .+|-.=-+-....|...+ .+++-.-.||....+ .+++++..++++
T Consensus 79 -vGgK~~y~~~~~g----~~G~Ava~GG~~~~~~~~----~~sl~Ge~YyaP~~l----ssGvd~y~ea~~ 136 (180)
T pfam07437 79 -VGAKGSYLWPDEG----PNGSAVAVGGGLALAIGP----SFSLQGEAYYAPSVL----SSGVDSYYEANS 136 (180)
T ss_pred -EEEEEEEECCCCC----CCCEEEEECCEEECCCCC----CEEEEEEEEECCHHH----CCCCHHHEEECC
T ss_conf -2036998276668----863189862568624588----578988789880673----256203337346
No 252
>PRK10449 heat-inducible protein; Provisional
Probab=21.66 E-value=59 Score=13.67 Aligned_cols=10 Identities=30% Similarity=0.145 Sum_probs=4.9
Q ss_pred CHHHHHHHHH
Q ss_conf 9138999999
Q gi|254780170|r 1 MYKDFFVSIL 10 (342)
Q Consensus 1 M~K~~l~~~l 10 (342)
|||.+.+.++
T Consensus 1 MKk~l~l~~~ 10 (140)
T PRK10449 1 MKKVVALVAL 10 (140)
T ss_pred CCHHHHHHHH
T ss_conf 9034999999
No 253
>pfam11131 PhrC_PhrF Rap-phr extracellular signalling. PhrC and PhrF stimulate ComA-dependent gene expression to different levels and are both required for full expression of genes activated by ComA, which activates the expression of genes involved in competence development and the production of several secreted products.
Probab=21.42 E-value=29 Score=15.68 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCE
Q ss_conf 913899999999999984012442168-99985794
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNASIL-GDIKKRGF 35 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a~tL-d~Vk~rG~ 35 (342)
||.|+++..+++.........++++.- -.|.+||-
T Consensus 1 lKsKl~v~CLA~aavF~at~ia~a~~~qf~VaeRGM 36 (37)
T pfam11131 1 LKSKLFVICLAAAAVFTATGIAQAPQHQFHVAERGM 36 (37)
T ss_pred CCCEEEEHHHHHHHHHEECCCCCCCHHHHHHHHHCC
T ss_conf 983276211555667243254558356510354057
No 254
>TIGR03525 GldK gliding motility-associated lipoprotein GldK. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldK is a lipoprotein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae. Knockouts of GldK abolish the gliding phenotype. GldK is homologous to GldJ. There is a GldK homolog in Cytophaga hutchinsonii and several other species that has a different, shorter architecture and is represented by a separate model. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=21.32 E-value=60 Score=13.62 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEEC
Q ss_conf 913899999999999984012442168999857949998717
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNASILGDIKKRGFLKCGINT 42 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a~tLd~Vk~rG~L~vGv~~ 42 (342)
|||.+++.++++++.+++. . .+|.|+ ||..
T Consensus 1 Mkk~~~~~~~~~~~~SCg~--~---------~~GELv-Gv~~ 30 (449)
T TIGR03525 1 MKKYLVFAALVVLVYSCGS--G---------DKGELV-GVEG 30 (449)
T ss_pred CCHHHHHHHHHHHHHHCCC--C---------CCCEEE-EECC
T ss_conf 9124899999998721058--9---------971387-3148
No 255
>KOG3019 consensus
Probab=21.17 E-value=61 Score=13.60 Aligned_cols=18 Identities=17% Similarity=0.244 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHC
Q ss_conf 998877443311212330
Q gi|254780170|r 239 NIVSWTHYAMVTAEELGI 256 (342)
Q Consensus 239 d~V~W~~~ali~Aee~gi 256 (342)
|+|+-..+++-.---.||
T Consensus 219 DL~~li~~ale~~~v~GV 236 (315)
T KOG3019 219 DLVNLIYEALENPSVKGV 236 (315)
T ss_pred HHHHHHHHHHHCCCCCCE
T ss_conf 789999999756897742
No 256
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase; InterPro: IPR006323 These sequences represent an enzyme that catalyzes the cleavage of the carbon phosphorous bond of a phosphonate. The mechanism depends on the substrate having a carbonyl one carbon away from the cleavage position. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases, and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base . The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilised by microorganisms as a chemical warfare agent..
Probab=21.10 E-value=61 Score=13.59 Aligned_cols=57 Identities=19% Similarity=0.374 Sum_probs=23.9
Q ss_pred CCEEEEEECCHH-HHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 960299825047-999998367800100256444237101000277757999988774433112123301520
Q gi|254780170|r 189 HRCDAYTGDISA-LYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEELGITQKN 260 (342)
Q Consensus 189 Gr~DA~~~D~s~-La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~git~~n 260 (342)
|.|-.|+....- ++.......--.||++-++-+.. .|-| |=..++-++=||||+-=|
T Consensus 117 GScsGYpr~vMd~v~~~Aa~~GY~pD~vVatDdvpq--------~GRP-------~P~~alkNvieLGv~dv~ 174 (199)
T TIGR01422 117 GSCSGYPREVMDIVVAEAALQGYKPDFVVATDDVPQ--------AGRP-------YPFMALKNVIELGVDDVN 174 (199)
T ss_pred ECCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCC--------CCCC-------HHHHHHHHHHHCCCCCCC
T ss_conf 247987578999999999747897664246622467--------8897-------478999989870752210
No 257
>PRK10765 nitroreductase A; Provisional
Probab=20.80 E-value=26 Score=15.92 Aligned_cols=13 Identities=8% Similarity=0.026 Sum_probs=8.7
Q ss_pred HHHHHHHHCCEEE
Q ss_conf 1689998579499
Q gi|254780170|r 25 SILGDIKKRGFLK 37 (342)
Q Consensus 25 ~tLd~Vk~rG~L~ 37 (342)
.|++.+++|-.+|
T Consensus 3 ~tie~i~~rRSiR 15 (240)
T PRK10765 3 PTIELILGHRSIR 15 (240)
T ss_pred HHHHHHHHCCCCC
T ss_conf 8999999767534
No 258
>COG3784 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.67 E-value=62 Score=13.53 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCE
Q ss_conf 91389999999999998401244216899985794
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNASILGDIKKRGF 35 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a~tLd~Vk~rG~ 35 (342)
|++.++++++ ++.+...++.+-|||+-+.-|.
T Consensus 3 ~~~~l~la~~---a~gl~s~sa~altld~A~tqGr 34 (109)
T COG3784 3 MKRTLLLALL---ALGLASSSAMALTLDEARTQGR 34 (109)
T ss_pred HHHHHHHHHH---HHHHCCHHHHHHHHHHHHHCCC
T ss_conf 7999999999---9830256789965899986561
No 259
>PRK02621 consensus
Probab=20.62 E-value=62 Score=13.53 Aligned_cols=20 Identities=15% Similarity=0.086 Sum_probs=9.8
Q ss_pred CCHHHHHHHHHCCCEEEEEE
Q ss_conf 79899999987396029982
Q gi|254780170|r 177 ERVEEIDAAYRAHRCDAYTG 196 (342)
Q Consensus 177 ~~~~~a~~al~~Gr~DA~~~ 196 (342)
.+.++...+|..+.+++++.
T Consensus 208 ~s~edi~~~l~~~~v~gviv 227 (254)
T PRK02621 208 GCCDHIAEALTEGKAEAALL 227 (254)
T ss_pred CCHHHHHHHHHHCCCEEEEE
T ss_conf 99999999998589819877
No 260
>pfam10626 TraO Conjugative transposon protein TraO. This is a family of conjugative transposon proteins.
Probab=20.60 E-value=37 Score=14.96 Aligned_cols=42 Identities=24% Similarity=0.325 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC-EEEEEEECCCC
Q ss_conf 9138999999999999840124421689998579-49998717898
Q gi|254780170|r 1 MYKDFFVSILCLIILFFTSFSTNASILGDIKKRG-FLKCGINTGLV 45 (342)
Q Consensus 1 M~K~~l~~~l~l~~~~~~~~aa~a~tLd~Vk~rG-~L~vGv~~~~p 45 (342)
|||.+++.++++ +...+..+.|+.+ --+.+| .++-|+-.+.-
T Consensus 1 MKk~~~i~~~~~--l~l~~~~a~AQR~-LPkqkGie~~~g~~~g~~ 43 (193)
T pfam10626 1 MKRKLFIILLAL--LALFAGQAHAQRC-LPGMKGIQLTAGMVDGFH 43 (193)
T ss_pred CCEEEEEHHHHH--HHHHCCHHHHHHH-CCCCCEEEEEEEEECCCE
T ss_conf 961886088999--9986498888764-777711799853214611
No 261
>pfam07901 DUF1672 Protein of unknown function (DUF1672). This family is composed of hypothetical bacterial proteins of unknown function.
Probab=20.50 E-value=56 Score=13.83 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=10.8
Q ss_pred EEEECCCCCHHHHHHHH
Q ss_conf 01000277757999988
Q gi|254780170|r 226 LAPAIIQGDTEWYNIVS 242 (342)
Q Consensus 226 lg~avr~gD~~w~d~V~ 242 (342)
+-|-+.++|..+.+-.+
T Consensus 205 yEpli~kn~~~fk~gmk 221 (304)
T pfam07901 205 YEPLIKKNDKEFKKGMK 221 (304)
T ss_pred HHHHHCCCHHHHHHHHH
T ss_conf 88876177177999999
No 262
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=20.31 E-value=63 Score=13.49 Aligned_cols=38 Identities=26% Similarity=0.379 Sum_probs=17.4
Q ss_pred HHHHHHHHCCCCCCEEE--ECCH--HHHHHHHHCCCEEEEEE
Q ss_conf 99999986299850787--4798--99999987396029982
Q gi|254780170|r 159 TLADYFKAHNMKYHPIV--FERV--EEIDAAYRAHRCDAYTG 196 (342)
Q Consensus 159 ~l~~~~~~~~~~~~~v~--~~~~--~~a~~al~~Gr~DA~~~ 196 (342)
.|.+|+...|+++.-.. .++. .+.+.+|..|..|++++
T Consensus 461 dLt~yl~~~~ik~~YlHs~i~t~eR~eIl~~LR~G~~DVlVG 502 (657)
T PRK05298 461 DLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVG 502 (657)
T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 999999967980799626661889999999985888758975
Done!