HHsearch alignment for GI: 254780170 and conserved domain: pfam00060

>pfam00060 Lig_chan Ligand-gated ion channel. This family includes the four transmembrane regions of the ionotropic glutamate receptors and NMDA receptors.
Probab=97.80  E-value=0.00017  Score=48.80  Aligned_cols=165  Identities=16%  Similarity=0.088  Sum_probs=99.4

Q ss_pred             EEEEEC--CCCCCCHHHHCCC---CEEEEECCCHHHHHHHH--------HHHCCCCCCEEEECCHHHHHHHHHCCC-EEE
Q ss_conf             346302--1134753641786---20343134269999999--------986299850787479899999987396-029
Q gi|254780170|r  128 GFIMHK--KKGISSVSQLSGA---SICVQAGTTTELTLADY--------FKAHNMKYHPIVFERVEEIDAAYRAHR-CDA  193 (342)
Q Consensus       128 ~~lVrk--~~~i~s~~dL~G~---~I~v~~GTT~e~~l~~~--------~~~~~~~~~~v~~~~~~~a~~al~~Gr-~DA  193 (342)
T Consensus        91 a~Lt~~~~~~~I~~i~dL~~~~~~~~g~~~~~~~~~~f~~s~~~~~~~~~~~~~~~~~~~~~~~~~egi~~v~~g~~~~A  170 (270)
T pfam00060        91 AFLTVERMQSPIQSLEDLAKQNKIGYGTLRGGSTFEFFKESKNPTYRRMWEYMISFKGEVNVESYEEGVQRVRKGNGLYA  170 (270)
T ss_pred             HHHHCCCCCCCCCCHHHHHHCCCCCEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCEE
T ss_conf             99731334777578999986798731114076167777861430688999998750666777899999999865886289


Q ss_pred             EEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHH
Q ss_conf             98250479999983678001002564442371010002777579999887744331121233015208988622671778
Q gi|254780170|r  194 YTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDV  273 (342)
Q Consensus       194 ~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i  273 (342)
T Consensus       171 ~i~e~~~l~~~~~--~~~c~l~~vg~~f~~~~~g~a~~k~-Sp~~~~~s~---~il~l~E~G~l~~l~~kW~~--~~~~C  242 (270)
T pfam00060       171 FLMESAYLEYEVA--RDCCKLTTVGEVFGTKGYGIAFPKG-SPLRDKLSR---AILELRESGELQKLENKWWK--KKGEC  242 (270)
T ss_pred             EEECHHHHHHHHH--HCCCCCEEECCCCCCCCEEEEECCC-CCHHHHHHH---HHHHHHHCCHHHHHHHHHCC--CCCCC
T ss_conf             9952588999997--0487627805311457546885189-930999999---99998726789999986458--99999


Q ss_pred             HHHHCCCCCCCCHHHCCCCHHHHHHHHHHCC
Q ss_conf             8762358876503337998679999999718
Q gi|254780170|r  274 QRFLGIDKSSNIGEALGLTKDWTYRIIRHMG  304 (342)
Q Consensus       274 ~r~lg~~~~~~~g~~lgl~~~~~~~~i~~vG  304 (342)
T Consensus       243 ----~~~~~~~~~~~l~l~~~~GlF~il~~G  269 (270)
T pfam00060       243 ----SSKSTAVSSSQLGLESFAGLFLILGIG  269 (270)
T ss_pred             ----CCCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             ----998877778852747767568774155