HHsearch alignment for GI: 254780170 and conserved domain: pfam03180
>pfam03180 Lipoprotein_9 NLPA lipoprotein. This family of bacterial lipoproteins contains several antigenic members, that may be involved in bacterial virulence. Their precise function is unknown. However they are probably distantly related to pfam00497 which are solute binding proteins.
Probab=95.22 E-value=0.28 Score=28.45 Aligned_cols=158 Identities=19% Similarity=0.179 Sum_probs=84.0
Q ss_pred HHHHHHHHCCCCCEEEEEEC-CCCCCHHHHHCCCEEEEEECCCCCC-CCHHCCCCCCC--CCCCCCCEEEEEECCCCCCC
Q ss_conf 99999996798220259981-4310026774396279981243253-20110278435--32234402346302113475
Q gi|254780170|r 64 CRALSSAIFDDPSKIQYLPL-NAKERFLALQSKQIDILSRNTDWTL-LREISLGLAFR--PITYFDGQGFIMHKKKGISS 139 (342)
Q Consensus 64 ~raiAaal~gd~~kVe~v~~-~~~~rf~aL~sG~vDil~~~~T~T~-~Rd~~~~v~Fs--~~~~~dgq~~lVrk~~~i~s 139 (342)
T Consensus 17 v~~~~~~~G---i~veiv~F~Dy~~pN~AL~~GeIDaN~fQH~~yl~~~n~~~g~~L~~v~~~~~~p~glYS---~k~ks 90 (236)
T pfam03180 17 AKPLAKKKG---LDLEIVEFTDYVQPNTALADGEIDANAFQHLPYLDQFNKEGGLDLVAVGNTHVEPIGLYS---KKYKS 90 (236)
T ss_pred HHHHHHHCC---CEEEEEEECCCCCHHHHHHCCCCCHHHHCCHHHHHHHHHHCCCCEEEEEEEEECCEEEEE---CCCCC
T ss_conf 999999649---879999816864550797789955244438999999999779967996304672379543---37688
Q ss_pred HHHH-CCCCEEEEECCCHHHHHHHHHHHCCC---------------------CCCEEEECCHHHHHHHHHCCCEEEEEEC
Q ss_conf 3641-78620343134269999999986299---------------------8507874798999999873960299825
Q gi|254780170|r 140 VSQL-SGASICVQAGTTTELTLADYFKAHNM---------------------KYHPIVFERVEEIDAAYRAHRCDAYTGD 197 (342)
Q Consensus 140 ~~dL-~G~~I~v~~GTT~e~~l~~~~~~~~~---------------------~~~~v~~~~~~~a~~al~~Gr~DA~~~D 197 (342)
T Consensus 91 l~~lp~Ga~IaIpnD~sN~~RAL~lL~~aGLI~Lk~~~~~~~t~~DI~~Npk~l~~~ev~-a~ql~~~l~d--vD~avin 167 (236)
T pfam03180 91 LSELPDGATIAVPNDPSNEGRALLLLEKAGLIKLKDGAGLLATVKDITENPKNLKIKELE-AAQLPRALDD--VDAAVIN 167 (236)
T ss_pred HHHCCCCCEEEECCCCCHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHCCCCCEEEEEC-HHHHHHHCCC--CCEEEEC
T ss_conf 758579998981588442999999999889889768999878988897286776699916-7775542166--5789986
Q ss_pred CHHHHHHHHHCCCCHHHCCCCCCCCCCCE--EEECCCCC
Q ss_conf 04799999836780010025644423710--10002777
Q gi|254780170|r 198 ISALYALKLTNDRPSEHVILPDIISKSPL--APAIIQGD 234 (342)
Q Consensus 198 ~s~La~~~~~~~~p~~~~il~e~iskEPl--g~avr~gD 234 (342)
T Consensus 168 ~n--~a~~agl-~p~~~~l~~e~-~~~~y~n~ivvr~~~ 202 (236)
T pfam03180 168 TN--YALQAGL-DPKKDALFEED-KDSPYVNIIVVREDD 202 (236)
T ss_pred HH--HHHHCCC-CHHHHHHHCCC-CCCCEEEEEEEECCC
T ss_conf 56--7988794-92121331478-899837999981777