HHsearch alignment for GI: 254780170 and conserved domain: pfam03466
>pfam03466 LysR_substrate LysR substrate binding domain. The structure of this domain is known and is similar to the periplasmic binding proteins.
Probab=96.89 E-value=0.041 Score=33.66 Aligned_cols=190 Identities=14% Similarity=0.130 Sum_probs=118.5
Q ss_pred HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH
Q ss_conf 57949998717898830688989880150999999999967982202599814310026774396279981243253201
Q gi|254780170|r 32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE 111 (342)
Q Consensus 32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd 111 (342)
T Consensus 4 ~~G~i~I~~~~~~~-----------~~~lp~~l~~f~~~-~-P~i~i~i~~~~~~~i~~~l~~g~~Di~i~~~~~---~- 66 (209)
T pfam03466 4 PRGRLRIGAPPTFA-----------AYLLPPLLARFRER-Y-PDVELELREGDSEELLDLLAEGELDLAIRRGPP---D- 66 (209)
T ss_pred CCEEEEEEEEHHHH-----------HHHHHHHHHHHHHH-C-CCCEEEEEECCCHHHHHHHHCCCCEEEEECCCC---C-
T ss_conf 87899999388999-----------99999999999998-8-892899998984889999986981488731789---9-
Q ss_pred HCCCCCCCCCCCCCCEEEEEECCC-----CCCCHHHHCCCC-EEEEECCCHHHHHHHHHHHCCCCCCE-EEECCHHHHHH
Q ss_conf 102784353223440234630211-----347536417862-03431342699999999862998507-87479899999
Q gi|254780170|r 112 ISLGLAFRPITYFDGQGFIMHKKK-----GISSVSQLSGAS-ICVQAGTTTELTLADYFKAHNMKYHP-IVFERVEEIDA 184 (342)
Q Consensus 112 ~~~~v~Fs~~~~~dgq~~lVrk~~-----~i~s~~dL~G~~-I~v~~GTT~e~~l~~~~~~~~~~~~~-v~~~~~~~a~~ 184 (342)
T Consensus 67 -~~~~~~~-~l~~~~~~~~~s~~~~l~~~~~i~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (209)
T pfam03466 67 -DPGLEAR-PLFEEPLVLVAPPDHPLAAGEPVSLEDLADEPLILLEPGSGLRDLVDRALERAGLRPRVALEVNSLEALLA 144 (209)
T ss_pred -CCCEEEE-EEEEEEEEEEECCCCHHHCCCCCCHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCHHHHHH
T ss_conf -9980899-97624136553367055428975435514665798569987137998778764876302467478799999
Q ss_pred HHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCC---HHHHHHHHHHH
Q ss_conf 9873960299825047999998367800100256--4442371010002777---57999988774
Q gi|254780170|r 185 AYRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGD---TEWYNIVSWTH 245 (342)
Q Consensus 185 al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD---~~w~d~V~W~~ 245 (342)
T Consensus 145 lv~~g~Gi~~lp~~~--~~~~--~~-~~~L~~i~~~~~~~~~~~~li~~~~~~~s~~~~~f~~~l~ 205 (209)
T pfam03466 145 AVAAGLGIALLPRSA--VARE--LA-DGRLVVLPLPDPPLPRPIYLVYRKGRRLSPAVRAFIDFLR 205 (209)
T ss_pred HHHHCCEEEECCHHH--HHHH--HH-CCCEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 999499999913999--9988--75-8998999588888744799999894978999999999999