HHsearch alignment for GI: 254780170 and conserved domain: pfam03466

>pfam03466 LysR_substrate LysR substrate binding domain. The structure of this domain is known and is similar to the periplasmic binding proteins.
Probab=96.89  E-value=0.041  Score=33.66  Aligned_cols=190  Identities=14%  Similarity=0.130  Sum_probs=118.5

Q ss_pred             HCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCH
Q ss_conf             57949998717898830688989880150999999999967982202599814310026774396279981243253201
Q gi|254780170|r   32 KRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLRE  111 (342)
Q Consensus        32 ~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd  111 (342)
T Consensus         4 ~~G~i~I~~~~~~~-----------~~~lp~~l~~f~~~-~-P~i~i~i~~~~~~~i~~~l~~g~~Di~i~~~~~---~-   66 (209)
T pfam03466         4 PRGRLRIGAPPTFA-----------AYLLPPLLARFRER-Y-PDVELELREGDSEELLDLLAEGELDLAIRRGPP---D-   66 (209)
T ss_pred             CCEEEEEEEEHHHH-----------HHHHHHHHHHHHHH-C-CCCEEEEEECCCHHHHHHHHCCCCEEEEECCCC---C-
T ss_conf             87899999388999-----------99999999999998-8-892899998984889999986981488731789---9-


Q ss_pred             HCCCCCCCCCCCCCCEEEEEECCC-----CCCCHHHHCCCC-EEEEECCCHHHHHHHHHHHCCCCCCE-EEECCHHHHHH
Q ss_conf             102784353223440234630211-----347536417862-03431342699999999862998507-87479899999
Q gi|254780170|r  112 ISLGLAFRPITYFDGQGFIMHKKK-----GISSVSQLSGAS-ICVQAGTTTELTLADYFKAHNMKYHP-IVFERVEEIDA  184 (342)
Q Consensus       112 ~~~~v~Fs~~~~~dgq~~lVrk~~-----~i~s~~dL~G~~-I~v~~GTT~e~~l~~~~~~~~~~~~~-v~~~~~~~a~~  184 (342)
T Consensus        67 -~~~~~~~-~l~~~~~~~~~s~~~~l~~~~~i~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (209)
T pfam03466        67 -DPGLEAR-PLFEEPLVLVAPPDHPLAAGEPVSLEDLADEPLILLEPGSGLRDLVDRALERAGLRPRVALEVNSLEALLA  144 (209)
T ss_pred             -CCCEEEE-EEEEEEEEEEECCCCHHHCCCCCCHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCHHHHHH
T ss_conf             -9980899-97624136553367055428975435514665798569987137998778764876302467478799999


Q ss_pred             HHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCC--CCCCCCCEEEECCCCC---HHHHHHHHHHH
Q ss_conf             9873960299825047999998367800100256--4442371010002777---57999988774
Q gi|254780170|r  185 AYRAHRCDAYTGDISALYALKLTNDRPSEHVILP--DIISKSPLAPAIIQGD---TEWYNIVSWTH  245 (342)
Q Consensus       185 al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~--e~iskEPlg~avr~gD---~~w~d~V~W~~  245 (342)
T Consensus       145 lv~~g~Gi~~lp~~~--~~~~--~~-~~~L~~i~~~~~~~~~~~~li~~~~~~~s~~~~~f~~~l~  205 (209)
T pfam03466       145 AVAAGLGIALLPRSA--VARE--LA-DGRLVVLPLPDPPLPRPIYLVYRKGRRLSPAVRAFIDFLR  205 (209)
T ss_pred             HHHHCCEEEECCHHH--HHHH--HH-CCCEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             999499999913999--9988--75-8998999588888744799999894978999999999999