HHsearch alignment for GI: 254780170 and conserved domain: pfam03480
>pfam03480 SBP_bac_7 Bacterial extracellular solute-binding protein, family 7. This family of proteins are involved in binding extracellular solutes for transport across the bacterial cytoplasmic membrane. This family includes a C4-dicarboxylate-binding protein and the sialic acid-binding protein SiaP. The structure of the SiaP receptor has revealed an overall topology similar to ATP binding cassette ESR (extracytoplasmic solute receptors) proteins. Upon binding of sialic acid, SiaP undergoes domain closure about a hinge region and kinking of an alpha-helix hinge component.
Probab=97.79 E-value=0.00029 Score=47.32 Aligned_cols=138 Identities=21% Similarity=0.253 Sum_probs=82.1
Q ss_pred EHHHHHHHHHHHHCCCCCEEEEEEC----CCCCCHHHHHCCCEEEEEECCCCCCCCHHCC--------------------
Q ss_conf 5099999999996798220259981----4310026774396279981243253201102--------------------
Q gi|254780170|r 59 FDVDFCRALSSAIFDDPSKIQYLPL----NAKERFLALQSKQIDILSRNTDWTLLREISL-------------------- 114 (342)
Q Consensus 59 fDVDl~raiAaal~gd~~kVe~v~~----~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~-------------------- 114 (342)
T Consensus 13 ~~~~fa~~V~e~T~G~-v~i~~~~~g~L~~~~e~~~~v~~G~~d~~~~~~~~~~~~~p~~~~~~lP~~~~~~~~~~~~~~ 91 (285)
T pfam03480 13 AAEKFAKLVEEKTGGR-LKIEVYPNSQLGGDREVIEALKNGTVDIAAPSSGYFGGLPPEIGVFDLPFLFDDEQHLERVLD 91 (285)
T ss_pred HHHHHHHHHHHHCCCE-EEEEEECCCCCCCHHHHHHHHHCCCCCEEEECCHHHCCCCHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 9999999999877990-899995598758879999999779948897640222125712324527546798999999995
Q ss_pred --------------CCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHH
Q ss_conf --------------784353223440234630211347536417862034313426999999998629985078747989
Q gi|254780170|r 115 --------------GLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVE 180 (342)
Q Consensus 115 --------------~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~ 180 (342)
T Consensus 92 ~~~~~~~~~~~~~~gv~~L~~-~~~g~~~~~~~~~pi~~~~DlkG~KiR~~~~~~~----~~~~~alGa--~pv~~-~~~ 163 (285)
T pfam03480 92 GEFGEALLKSLEAKGLKGLAF-WNNGFRQFTNNKKPINSPEDLKGLKLRVPPSPLL----GEVFKALGA--NPTPM-PFG 163 (285)
T ss_pred CHHHHHHHHHHHHCCCEEEEE-ECCCCEEEEECCCCCCCHHHHCCCEEEECCCHHH----HHHHHHCCC--CCCCC-CHH
T ss_conf 847899999999769689986-2688457522788889979967982883586799----999998599--74015-758
Q ss_pred HHHHHHHCCCEEEEEECCHHHHHHH
Q ss_conf 9999987396029982504799999
Q gi|254780170|r 181 EIDAAYRAHRCDAYTGDISALYALK 205 (342)
Q Consensus 181 ~a~~al~~Gr~DA~~~D~s~La~~~ 205 (342)
T Consensus 164 evy~aLq~GvvDg~~~~~~~~~~~~ 188 (285)
T pfam03480 164 EVYTALQTGVVDGQENPLSNIYSQK 188 (285)
T ss_pred HHHHHHHHCCEEEEECCCHHHHHHC
T ss_conf 8999997084626753713565404