HHsearch alignment for GI: 254780170 and conserved domain: pfam04069

>pfam04069 OpuAC Substrate binding domain of ABC-type glycine betaine transport system. Part of a high affinity multicomponent binding-protein-dependent transport system involved in bacterial osmoregulation. This domain is often fused to the permease component of the transporter complex. Family members are often integral membrane proteins or predicted to be attached to the membrane by a lipid anchor. Glycine betaine is involved in protection from high osmolarity environments for example in Bacillus subtilis. The family member OpuBC is closely related, and involved in choline transport. Choline is necessary for the biosynthesis of glycine betaine. L-carnitine is important for osmoregulation in Listeria monocytogenes. Family also contains proteins binding l-proline (ProX), histidine (HisX) and taurine (TauA).
Probab=97.71  E-value=0.00049  Score=45.86  Aligned_cols=131  Identities=22%  Similarity=0.188  Sum_probs=81.4

Q ss_pred             HHHHHHHHHCCCCCEEEEEECCCC-CCHHHHHCCCEEEEEECCCCCCCC-----H---HCCCCCCCCCCCC-CCEEEEEE
Q ss_conf             999999996798220259981431-002677439627998124325320-----1---1027843532234-40234630
Q gi|254780170|r   63 FCRALSSAIFDDPSKIQYLPLNAK-ERFLALQSKQIDILSRNTDWTLLR-----E---ISLGLAFRPITYF-DGQGFIMH  132 (342)
Q Consensus        63 l~raiAaal~gd~~kVe~v~~~~~-~rf~aL~sG~vDil~~~~T~T~~R-----d---~~~~v~Fs~~~~~-dgq~~lVr  132 (342)
T Consensus        19 i~~~~Le~~G---~~V~~~~~~~~~~~~~al~~G~iDi~~~~--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vp   93 (256)
T pfam04069        19 IAAQLLEALG---YVVELVGLGSTAVLFAALASGDIDLYPEE--WTGTTYEAYKKAVEEKLGLLVLGPLGAGNTYGLAVP   93 (256)
T ss_pred             HHHHHHHHCC---CCEEEEECCCCHHHHHHHHCCCCCEEEHH--CCCCHHHHHHHHHHCCCCEEECCCCCCCCEEEEEEC
T ss_conf             9999999769---81698547870899999976997586333--066257999987514687386135777875899985


Q ss_pred             CC----CCCCCHHHHCC----------CCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCH-----HHHHHHHHCCCEEE
Q ss_conf             21----13475364178----------6203431342699999999862998507874798-----99999987396029
Q gi|254780170|r  133 KK----KGISSVSQLSG----------ASICVQAGTTTELTLADYFKAHNMKYHPIVFERV-----EEIDAAYRAHRCDA  193 (342)
Q Consensus       133 k~----~~i~s~~dL~G----------~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~-----~~a~~al~~Gr~DA  193 (342)
T Consensus        94 ~~~a~~~~i~si~dL~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~yGl~~~~-~~~~s~~~~~a~~~~A~~~g~~~v  172 (256)
T pfam04069        94 KYVAEKPGIKSISDLAKPADDELGFKGEFIGRPDGWGCTRSTEGLLKAYGLDKYE-LVEGSEAAMDALLYAAIKRGEPDV  172 (256)
T ss_pred             HHHHHHCCCCCHHHHHCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCCEE-ECCCCHHHHHHHHHHHHHCCCCEE
T ss_conf             8888356998799972742102488865532788854006789999863976401-235855545999999998499889


Q ss_pred             EEECCH
Q ss_conf             982504
Q gi|254780170|r  194 YTGDIS  199 (342)
Q Consensus       194 ~~~D~s  199 (342)
T Consensus       173 ~~~w~p  178 (256)
T pfam04069       173 VYAWTP  178 (256)
T ss_pred             EEECCC
T ss_conf             996376