HHsearch alignment for GI: 254780170 and conserved domain: pfam04069
>pfam04069 OpuAC Substrate binding domain of ABC-type glycine betaine transport system. Part of a high affinity multicomponent binding-protein-dependent transport system involved in bacterial osmoregulation. This domain is often fused to the permease component of the transporter complex. Family members are often integral membrane proteins or predicted to be attached to the membrane by a lipid anchor. Glycine betaine is involved in protection from high osmolarity environments for example in Bacillus subtilis. The family member OpuBC is closely related, and involved in choline transport. Choline is necessary for the biosynthesis of glycine betaine. L-carnitine is important for osmoregulation in Listeria monocytogenes. Family also contains proteins binding l-proline (ProX), histidine (HisX) and taurine (TauA).
Probab=97.71 E-value=0.00049 Score=45.86 Aligned_cols=131 Identities=22% Similarity=0.188 Sum_probs=81.4
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCC-CCHHHHHCCCEEEEEECCCCCCCC-----H---HCCCCCCCCCCCC-CCEEEEEE
Q ss_conf 999999996798220259981431-002677439627998124325320-----1---1027843532234-40234630
Q gi|254780170|r 63 FCRALSSAIFDDPSKIQYLPLNAK-ERFLALQSKQIDILSRNTDWTLLR-----E---ISLGLAFRPITYF-DGQGFIMH 132 (342)
Q Consensus 63 l~raiAaal~gd~~kVe~v~~~~~-~rf~aL~sG~vDil~~~~T~T~~R-----d---~~~~v~Fs~~~~~-dgq~~lVr 132 (342)
T Consensus 19 i~~~~Le~~G---~~V~~~~~~~~~~~~~al~~G~iDi~~~~--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vp 93 (256)
T pfam04069 19 IAAQLLEALG---YVVELVGLGSTAVLFAALASGDIDLYPEE--WTGTTYEAYKKAVEEKLGLLVLGPLGAGNTYGLAVP 93 (256)
T ss_pred HHHHHHHHCC---CCEEEEECCCCHHHHHHHHCCCCCEEEHH--CCCCHHHHHHHHHHCCCCEEECCCCCCCCEEEEEEC
T ss_conf 9999999769---81698547870899999976997586333--066257999987514687386135777875899985
Q ss_pred CC----CCCCCHHHHCC----------CCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCH-----HHHHHHHHCCCEEE
Q ss_conf 21----13475364178----------6203431342699999999862998507874798-----99999987396029
Q gi|254780170|r 133 KK----KGISSVSQLSG----------ASICVQAGTTTELTLADYFKAHNMKYHPIVFERV-----EEIDAAYRAHRCDA 193 (342)
Q Consensus 133 k~----~~i~s~~dL~G----------~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~-----~~a~~al~~Gr~DA 193 (342)
T Consensus 94 ~~~a~~~~i~si~dL~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~yGl~~~~-~~~~s~~~~~a~~~~A~~~g~~~v 172 (256)
T pfam04069 94 KYVAEKPGIKSISDLAKPADDELGFKGEFIGRPDGWGCTRSTEGLLKAYGLDKYE-LVEGSEAAMDALLYAAIKRGEPDV 172 (256)
T ss_pred HHHHHHCCCCCHHHHHCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCCEE-ECCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 8888356998799972742102488865532788854006789999863976401-235855545999999998499889
Q ss_pred EEECCH
Q ss_conf 982504
Q gi|254780170|r 194 YTGDIS 199 (342)
Q Consensus 194 ~~~D~s 199 (342)
T Consensus 173 ~~~w~p 178 (256)
T pfam04069 173 VYAWTP 178 (256)
T ss_pred EEECCC
T ss_conf 996376