HHsearch alignment for GI: 254780170 and conserved domain: smart00062
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins. bacterial proteins, eukaryotic ones are in PBPe
Probab=100.00 E-value=3.4e-32 Score=224.26 Aligned_cols=211 Identities=26% Similarity=0.338 Sum_probs=184.2
Q ss_pred EEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCC
Q ss_conf 49998717898830688989880150999999999967982202599814310026774396279981243253201102
Q gi|254780170|r 35 FLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISL 114 (342)
Q Consensus 35 ~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~ 114 (342)
T Consensus 1 ~i~v~~~~~~pP~~~~~~~G~~~G~~~Dil~~~~~~lg---~~i~~~~~~~~r~~~~l~~g~~D~~~~~~~~~~~r~~-- 75 (219)
T smart00062 1 TLRVGTNGDYPPFSFADEDGELTGFDVDLAKAIAKELG---LKVEFVEVSFDNLLTALKSGKIDVVAAGMTITPERAK-- 75 (219)
T ss_pred CEEEEECCCCCCEEEECCCCCEEEEHHHHHHHHHHHHC---CCEEEEECCHHHHHHHHHCCCCCEEEEECCCCHHHHH--
T ss_conf 98999789989927999999778829999999999979---9679998478999999975897705311357867750--
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEEE
Q ss_conf 78435322344023463021134753641786203431342699999999862998507874798999999873960299
Q gi|254780170|r 115 GLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDAY 194 (342)
Q Consensus 115 ~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA~ 194 (342)
T Consensus 76 ~~~~s~p~~~~~~~~~~~~~~~~~~~~dL~g~~i~~~~g~~~~~~l----~~~~~~~~~~~~~~~~~~~~~l~~g~vD~~ 151 (219)
T smart00062 76 QVDFSDPYYKSGQVILVRKDSPIKSLEDLKGKKVAVVAGTTGEELL----KKLYPEAKIVSYDSQAEALAALKAGRADAA 151 (219)
T ss_pred CCCCCCCEECCCEEEEEECCCCCCCHHHHCCCEEEEECCCHHHHHH----HHHCCCCEEEEECCHHHHHHHHHCCCEEEE
T ss_conf 0222455002444799965899799799679779995798799999----972878528985999999999983987999
Q ss_pred EECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 825047999998367800100256444237101000277757999988774433112123
Q gi|254780170|r 195 TGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEEL 254 (342)
Q Consensus 195 ~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~ 254 (342)
T Consensus 152 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~n~~l~~l~~~G~l 211 (219)
T smart00062 152 VADAPALAALVKQHGLPELKIVGDPLDTPEGYAFAVRKGDPELLDKINKALKELKADGTL 211 (219)
T ss_pred EECHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCHH
T ss_conf 977999999998489998378346777764199999599999999999999999968099