HHsearch results for GI: 254780170 and protein with PDBid: 1al3_A
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=95.09 E-value=0.18 Score=28.20 Aligned_cols=198 Identities=11% Similarity=0.056 Sum_probs=115.8
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCC-----
Q ss_conf 999999999679822025998143100267743962799812432532011027843532234402346302113-----
Q gi|254780170|r 62 DFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKG----- 136 (342)
Q Consensus 62 Dl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~----- 136 (342)
+++..+...- ....+++...+..+.+..|.+|++|+.+...... .+ . .....+.+.+...+++.++..
T Consensus 110 ~~l~~~~~~~--P~i~i~l~~~~~~~~~~~l~~~~~D~~i~~~~~~-~~---~-~~~~~~l~~~~~~~~~~~~~~l~~~~ 182 (324)
T 1al3_A 110 GVIKGFIERY--PRVSLHMHQGSPTQIAEAVSKGNADFAIATEALH-LY---D-DLVMLPCYHWNRSIVVTPEHPLATKG 182 (324)
T ss_dssp HHHHHHHHHC--TEEEEEEEECCHHHHHHHHHTTCCSEEEESSCCC-TT---S-CEEEEEEEEECEEEEECTTSTTTTTS
T ss_pred HHHHHHHHHC--CCCEEEEEECCHHHHHHHHHCCCEEEEEECCCCC-CC---C-CEEEEEEEEEEEEEEECCCCHHCCCC
T ss_conf 9999999758--9828999979879998667479825886306767-76---6-50589865300579974652210399
Q ss_pred CCCHHHHCCCCEEE-EECCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHH
Q ss_conf 47536417862034-313426999999998629985078-7479899999987396029982504799999836780010
Q gi|254780170|r 137 ISSVSQLSGASICV-QAGTTTELTLADYFKAHNMKYHPI-VFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEH 214 (342)
Q Consensus 137 i~s~~dL~G~~I~v-~~GTT~e~~l~~~~~~~~~~~~~v-~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~ 214 (342)
.-+++||.+..... ..++.....+..++...+...++. .+++...+.+.+.+|.+-++..... . . ...++. .
T Consensus 183 ~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi~~lp~~~-~-~---~~~~~~-l 256 (324)
T 1al3_A 183 SVSIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGVGVIASMA-V-D---PVSDPD-L 256 (324)
T ss_dssp CCCHHHHHTSEEEEECTTSTTHHHHHHHHHHHTCCCEEEEEESSHHHHHHHHHHTSCEEEEEGGG-C-C---TTTCTT-S
T ss_pred CCCHHHHHHCCCEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCEEEECHHHH-H-H---HHHCCC-E
T ss_conf 99999996287720489984899999999976998756999999999999999399799725989-7-3---874899-8
Q ss_pred CC--CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHH
Q ss_conf 02--5644423710100027775799998877443311212330152089886226717788762
Q gi|254780170|r 215 VI--LPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEELGITQKNINQVSKDTTNPDVQRFL 277 (342)
Q Consensus 215 ~i--l~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~git~~nv~~~~~~s~~p~i~r~l 277 (342)
+. +++...+-++..+.|++.. ....+++-+..+ +|+ ++..-+++...-..+.++++++
T Consensus 257 v~~~~~~~~~~~~~~l~~r~~~~-~s~~~~~fi~~~--~~~--l~r~~~~~~~~~~~~~~~~~~~ 316 (324)
T 1al3_A 257 VKLDANGIFSHSTTKIGFRRSTF-LRSYMYDFIQRF--APH--LTRDVVDTAVALRSNEDIEAMF 316 (324)
T ss_dssp EEEECBTTBCCEEEEEEEETTCC-CCHHHHHHHHHH--CTT--CCHHHHHHHHHCCCHHHHHHHH
T ss_pred EEEECCCCCCCCEEEEEEECCCC-CCHHHHHHHHHH--HHH--HCHHHHHHHHCCCCHHHHHHHH
T ss_conf 99958788865579999969685-699999999999--987--4799898775079979999875