HHsearch results for GI: 254780170 and protein with PDBid: 1twy_A

>1twy_A ABC transporter, periplasmic substrate-binding protein; nysgxrc target, structural genomics, protein structure initiative; 1.65A {Vibrio cholerae o1 biovar eltor str} SCOP: c.94.1.1
Probab=95.74  E-value=0.11  Score=29.66  Aligned_cols=128  Identities=14%  Similarity=0.147  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHCCC--CCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCC----
Q ss_conf             9999999996798--2202599814310026774396279981243253201102784353223440234630211----
Q gi|254780170|r   62 DFCRALSSAIFDD--PSKIQYLPLNAKERFLALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKK----  135 (342)
Q Consensus        62 Dl~raiAaal~gd--~~kVe~v~~~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~----  135 (342)
                      .+.++++++--..  ..+|++....+..-+..|.+|++|+.+..-.++.+ +....+. ..+.-+++..++|.++.    
T Consensus        40 ~l~~~l~~~f~~~~P~~~v~~~~~gSg~~~~~l~~g~~di~~~s~~~~~~-e~~~~~~-~~~ia~~~~~ivv~~~n~~~~  117 (290)
T 1twy_A           40 RIMDVLAEKYNQQHPETYVAVQGVGSTAGISLLKKGVADIAMTSRYLTES-EAQNTLH-TFTLAFDGLAIVVNQANPVTN  117 (290)
T ss_dssp             HHHHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHTTSCSEEEESSCCCTT-TCCTTCE-EEEEEEEEEEEEECTTCCCCE
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCHHH-HHHCCCE-EEEEEECCEEEEECCCCCCCC
T ss_conf             99999999999888895799971686799999982686412255400134-6634505-677886025764057785234


Q ss_pred             ------------CCCCHHHHCC--CCEEEE---ECCCHHHHHHHHHHH---------CCCCCCEEEECCHHHHHHHHHCC
Q ss_conf             ------------3475364178--620343---134269999999986---------29985078747989999998739
Q gi|254780170|r  136 ------------GISSVSQLSG--ASICVQ---AGTTTELTLADYFKA---------HNMKYHPIVFERVEEIDAAYRAH  189 (342)
Q Consensus       136 ------------~i~s~~dL~G--~~I~v~---~GTT~e~~l~~~~~~---------~~~~~~~v~~~~~~~a~~al~~G  189 (342)
                                  .|+.|+|+.|  ..|.+.   .+|.+.....++...         ....-.....++.......+..+
T Consensus       118 ls~~~L~~i~~g~it~W~~~~~~~~~i~~~~r~~~Sgt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~~  197 (290)
T 1twy_A          118 LTREQLYGIYKGQITNWKQVGGNDQKIAVVTREASSGTRYSFESLMGLTKTVKDREVSDVAPTALVVNSNSMMKTLVNHN  197 (290)
T ss_dssp             ECHHHHHHHHHTSCCBGGGGTSCSCBCEEEEECTTCHHHHHHHHHHTCEEEETTEEEECSCTTSEEESSHHHHHHHHHHC
T ss_pred             CCHHHHHHHHCCCCCCHHHCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHCC
T ss_conf             58989856442876753104899884178527999727999999961044212121023577127943848999999648


Q ss_pred             CE
Q ss_conf             60
Q gi|254780170|r  190 RC  191 (342)
Q Consensus       190 r~  191 (342)
                      .-
T Consensus       198 ~~  199 (290)
T 1twy_A          198 TQ  199 (290)
T ss_dssp             TT
T ss_pred             CC
T ss_conf             88