HHsearch results for GI: 254780170 and protein with PDBid: 1us5_A
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=99.15 E-value=2.5e-10 Score=84.35 Aligned_cols=153 Identities=14% Similarity=0.171 Sum_probs=101.9
Q ss_pred EEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCC-CCCHHHHHCCCEEEEEECCCCCCC----
Q ss_conf 499987178988306889898801509999999999679822025998143-100267743962799812432532----
Q gi|254780170|r 35 FLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNA-KERFLALQSKQIDILSRNTDWTLL---- 109 (342)
Q Consensus 35 ~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~-~~rf~aL~sG~vDil~~~~T~T~~---- 109 (342)
.|++|+.. | .|.|--+-..+|+.+.+.. +...++.++... .+.+..|.+|++|+.+.....-..
T Consensus 20 ~l~i~tg~--~-------gg~~~~~g~~ia~~~~~~~--~gi~~~~~~t~Gs~~N~~~l~~g~~d~a~~~~~~~~~~~~~ 88 (314)
T 1us5_A 20 FITIGSGS--T-------TGVYFPVATGIAKLVNDAN--VGIRANARSTGGSVANINAINAGEFEMALAQNDIAYYAYQG 88 (314)
T ss_dssp EEEEECCC--T-------TSSHHHHHHHHHHHHHHHT--SSEEEEEECCSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHT
T ss_pred EEEEEECC--C-------CCCHHHHHHHHHHHHHHCC--CCEEEEEEECCCHHHHHHHHHCCCCCEEEECHHHHHHHHHC
T ss_conf 48999799--9-------9714999999999997358--98489998078889999999769971999750899999846
Q ss_pred -----CH--HCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEE-CCCHHHHHHHHHHHCCCCC---CEEEECC
Q ss_conf -----01--10278435322344023463021134753641786203431-3426999999998629985---0787479
Q gi|254780170|r 110 -----RE--ISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQA-GTTTELTLADYFKAHNMKY---HPIVFER 178 (342)
Q Consensus 110 -----Rd--~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~-GTT~e~~l~~~~~~~~~~~---~~v~~~~ 178 (342)
.+ ....+.-..+.|.....++||++++|++++||+||+|.+.. |+.++.+....++..++.. ..+.+.+
T Consensus 89 ~g~~~~~~~~~~~lr~v~~~~~~~~~~~v~~ds~I~s~~DL~Gkrv~~g~~gs~~~~~~~~~l~~~g~~~~d~~~v~~~~ 168 (314)
T 1us5_A 89 CCIPAFEGKPVKTIRALAALYPEVVHVVARKDAGIRTVADLKGKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVS 168 (314)
T ss_dssp CSSTTTTTCCCTTEEEEEEEEEEEEEEEEETTSSCSSGGGGTTSEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECCC
T ss_pred CCCCCCCCCCCCCEEEEEEECHHHHEEEECCCCCCCCHHHHCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 68753345754040278870511331330377776778880887751368885136689999998099834463234268
Q ss_pred HHHHHHHHHCCCEEEEEECC
Q ss_conf 89999998739602998250
Q gi|254780170|r 179 VEEIDAAYRAHRCDAYTGDI 198 (342)
Q Consensus 179 ~~~a~~al~~Gr~DA~~~D~ 198 (342)
..++..++.+|++||++.-.
T Consensus 169 ~~~~~~al~~g~iDa~~~~~ 188 (314)
T 1us5_A 169 ASQGIQLMQDKRADALFYTV 188 (314)
T ss_dssp HHHHHHHHHTTSCSEEEEEE
T ss_pred HHHHHHHHHCCCCCEEEEEC
T ss_conf 88999997479752799825