HHsearch results for GI: 254780170 and protein with PDBid: 1yae_A
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.94 E-value=8.5e-27 Score=188.66 Aligned_cols=214 Identities=13% Similarity=0.063 Sum_probs=160.0
Q ss_pred HHHCCEEEEEEECCCCCCEEECCC-------CCEEEEHHHHHHHHHHHHCCCCCEEEEEE-------------CCCCCCH
Q ss_conf 985794999871789883068898-------98801509999999999679822025998-------------1431002
Q gi|254780170|r 30 IKKRGFLKCGINTGLVGFAEVKAN-------GDWKGFDVDFCRALSSAIFDDPSKIQYLP-------------LNAKERF 89 (342)
Q Consensus 30 Vk~rG~L~vGv~~~~ppfs~~d~~-------G~~~GfDVDl~raiAaal~gd~~kVe~v~-------------~~~~~rf 89 (342)
..++++|+||+ ...|||.+.+++ ++++||||||+++||+.++- +++|+. .+|..++
T Consensus 9 ~~~~~t~~v~t-~~~pP~~~~~~~~~~~~~n~~~~Gf~vDl~~~ia~~lg~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (312)
T 1yae_A 9 SLSNRSLIVTT-ILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGF---TYEIRLVEDGKYGAQDDVNGQWNGMV 84 (312)
T ss_dssp TTCSCEEEEEE-CCBTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHCC---EEEEEECSSCCCCCBCTTTCCBCSHH
T ss_pred CCCCCEEEEEE-CCCCCCEEEECCCCCCCCCCCEEEEHHHHHHHHHHHCCC---CEEEEEECCCCCCCCCCCCCCHHHHH
T ss_conf 23688899998-245996788169987678986688789999999998299---77999905775453233678889987
Q ss_pred HHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCC-------------------------CCCHHHHC
Q ss_conf 67743962799812432532011027843532234402346302113-------------------------47536417
Q gi|254780170|r 90 LALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKG-------------------------ISSVSQLS 144 (342)
Q Consensus 90 ~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~-------------------------i~s~~dL~ 144 (342)
++|++|++|++++++|+|++|.. .++|+.|||..+++++||++++ |++++||.
T Consensus 85 ~~l~~g~~Di~i~~~sit~eR~~--~v~FS~PY~~~~~~lvv~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~s~~dl~ 162 (312)
T 1yae_A 85 RELIDHKADLAVAPLAITYVREK--VIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGSLVPRGSERMESPIDSADDLA 162 (312)
T ss_dssp HHHHTTSCSEECSSCBCCHHHHH--HEEEEEEEEEECEEEEEEC----------------------------CCSHHHHH
T ss_pred HHHCCCEEEEEEECCEECHHHHH--CCCCCCCEEEECEEEEEECCCCCCCCHHHHHCCCEEEEEEEEECCCCCCCHHHHC
T ss_conf 43224406599864585177741--0564777463047999998987775406662773566687320356658979958
Q ss_pred CCC---EEEEECCCHHHHHHHHH----H---HCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHH
Q ss_conf 862---03431342699999999----8---6299850787479899999987396029982504799999836780010
Q gi|254780170|r 145 GAS---ICVQAGTTTELTLADYF----K---AHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEH 214 (342)
Q Consensus 145 G~~---I~v~~GTT~e~~l~~~~----~---~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~ 214 (342)
++. +++..|+++...+.+.. . ..........+....+...++..++.||++.|.+.+..... ++...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~d~~~~~~~~~---~~~~~ 239 (312)
T 1yae_A 163 KQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQ---RNCNL 239 (312)
T ss_dssp TCSSSEEECBTTSHHHHHHHHCCBHHHHHHHHHHHHTHHHHCBSSHHHHHHHHHHSSEEEEEEHHHHHHHHT---TCTTE
T ss_pred CCEEEEEEEEECEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHCCCCEEEECHHHHHHHHH---CCCCE
T ss_conf 983699978812009998765101468899987630443121145688999971898599913899999984---49966
Q ss_pred CCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 025644423710100027775799998877443311212
Q gi|254780170|r 215 VILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEE 253 (342)
Q Consensus 215 ~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee 253 (342)
.++++.+..+++|+++|||+ .|++.++-.+..|.+-.+
T Consensus 240 ~~~~~~~~~~~~~~a~~K~s-~L~~~in~aL~~l~~~G~ 277 (312)
T 1yae_A 240 TQIGGLIDSKGYGVGTPMGS-PYRDKITIAILQLQEEGK 277 (312)
T ss_dssp EEESSCSSCEEEEEEEETTC-SSHHHHHHHHHHHHHHTH
T ss_pred EEECCCCCCCEEEEEEECCC-HHHHHHHHHHHHHHHCCH
T ss_conf 98044467732899992880-999999999999997898