HHsearch results for GI: 254780170 and protein with PDBid: 1yae_A

>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.94  E-value=8.5e-27  Score=188.66  Aligned_cols=214  Identities=13%  Similarity=0.063  Sum_probs=160.0

Q ss_pred             HHHCCEEEEEEECCCCCCEEECCC-------CCEEEEHHHHHHHHHHHHCCCCCEEEEEE-------------CCCCCCH
Q ss_conf             985794999871789883068898-------98801509999999999679822025998-------------1431002
Q gi|254780170|r   30 IKKRGFLKCGINTGLVGFAEVKAN-------GDWKGFDVDFCRALSSAIFDDPSKIQYLP-------------LNAKERF   89 (342)
Q Consensus        30 Vk~rG~L~vGv~~~~ppfs~~d~~-------G~~~GfDVDl~raiAaal~gd~~kVe~v~-------------~~~~~rf   89 (342)
                      ..++++|+||+ ...|||.+.+++       ++++||||||+++||+.++-   +++|+.             .+|..++
T Consensus         9 ~~~~~t~~v~t-~~~pP~~~~~~~~~~~~~n~~~~Gf~vDl~~~ia~~lg~---~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (312)
T 1yae_A            9 SLSNRSLIVTT-ILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGF---TYEIRLVEDGKYGAQDDVNGQWNGMV   84 (312)
T ss_dssp             TTCSCEEEEEE-CCBTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHCC---EEEEEECSSCCCCCBCTTTCCBCSHH
T ss_pred             CCCCCEEEEEE-CCCCCCEEEECCCCCCCCCCCEEEEHHHHHHHHHHHCCC---CEEEEEECCCCCCCCCCCCCCHHHHH
T ss_conf             23688899998-245996788169987678986688789999999998299---77999905775453233678889987


Q ss_pred             HHHHCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCC-------------------------CCCHHHHC
Q ss_conf             67743962799812432532011027843532234402346302113-------------------------47536417
Q gi|254780170|r   90 LALQSKQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKG-------------------------ISSVSQLS  144 (342)
Q Consensus        90 ~aL~sG~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~-------------------------i~s~~dL~  144 (342)
                      ++|++|++|++++++|+|++|..  .++|+.|||..+++++||++++                         |++++||.
T Consensus        85 ~~l~~g~~Di~i~~~sit~eR~~--~v~FS~PY~~~~~~lvv~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~s~~dl~  162 (312)
T 1yae_A           85 RELIDHKADLAVAPLAITYVREK--VIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGSLVPRGSERMESPIDSADDLA  162 (312)
T ss_dssp             HHHHTTSCSEECSSCBCCHHHHH--HEEEEEEEEEECEEEEEEC----------------------------CCSHHHHH
T ss_pred             HHHCCCEEEEEEECCEECHHHHH--CCCCCCCEEEECEEEEEECCCCCCCCHHHHHCCCEEEEEEEEECCCCCCCHHHHC
T ss_conf             43224406599864585177741--0564777463047999998987775406662773566687320356658979958


Q ss_pred             CCC---EEEEECCCHHHHHHHHH----H---HCCCCCCEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHH
Q ss_conf             862---03431342699999999----8---6299850787479899999987396029982504799999836780010
Q gi|254780170|r  145 GAS---ICVQAGTTTELTLADYF----K---AHNMKYHPIVFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEH  214 (342)
Q Consensus       145 G~~---I~v~~GTT~e~~l~~~~----~---~~~~~~~~v~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~  214 (342)
                      ++.   +++..|+++...+.+..    .   ..........+....+...++..++.||++.|.+.+.....   ++...
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~d~~~~~~~~~---~~~~~  239 (312)
T 1yae_A          163 KQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQ---RNCNL  239 (312)
T ss_dssp             TCSSSEEECBTTSHHHHHHHHCCBHHHHHHHHHHHHTHHHHCBSSHHHHHHHHHHSSEEEEEEHHHHHHHHT---TCTTE
T ss_pred             CCEEEEEEEEECEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHCCCCEEEECHHHHHHHHH---CCCCE
T ss_conf             983699978812009998765101468899987630443121145688999971898599913899999984---49966


Q ss_pred             CCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             025644423710100027775799998877443311212
Q gi|254780170|r  215 VILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEE  253 (342)
Q Consensus       215 ~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee  253 (342)
                      .++++.+..+++|+++|||+ .|++.++-.+..|.+-.+
T Consensus       240 ~~~~~~~~~~~~~~a~~K~s-~L~~~in~aL~~l~~~G~  277 (312)
T 1yae_A          240 TQIGGLIDSKGYGVGTPMGS-PYRDKITIAILQLQEEGK  277 (312)
T ss_dssp             EEESSCSSCEEEEEEEETTC-SSHHHHHHHHHHHHHHTH
T ss_pred             EEECCCCCCCEEEEEEECCC-HHHHHHHHHHHHHHHCCH
T ss_conf             98044467732899992880-999999999999997898