HHsearch results for GI: 254780170 and protein with PDBid: 2a5s_A
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B*
Probab=99.95 E-value=2.3e-28 Score=198.61 Aligned_cols=201 Identities=12% Similarity=0.107 Sum_probs=156.5
Q ss_pred CEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEC-----------CCCCCHHHHHCCCEEEEEECCCCCCCCHHCCC
Q ss_conf 3068898988015099999999996798220259981-----------43100267743962799812432532011027
Q gi|254780170|r 47 FAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPL-----------NAKERFLALQSKQIDILSRNTDWTLLREISLG 115 (342)
Q Consensus 47 fs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~-----------~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~ 115 (342)
....+.++.++||+|||+++||+.++- ++||+.+ +|++.+.+|.+|++|++++++|+|++|+ ..
T Consensus 48 ~~~~~~~~~~~G~~iDl~~~ia~~lg~---~~e~~~v~d~~~g~~~~~~w~~li~~l~~g~~Di~i~~~tit~eR~--~~ 122 (284)
T 2a5s_A 48 NEGMNVKKCCKGFCIDILKKLSRTVKF---TYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERS--EV 122 (284)
T ss_dssp SCEEEEEEEEESHHHHHHHHHHHHHTC---CEEEEECCSSSSCCEETTEECHHHHHHHTTSCSEECSSCBCCHHHH--TT
T ss_pred CCCCCCCCCEEEEHHHHHHHHHHHHCC---CEEEEEECCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCHHHH--HH
T ss_conf 677678876389729999999998499---7799993587657657888899997663885899995880799999--54
Q ss_pred CCCCCCCCCCCEEEEEECCCCCCCHHHHC---------CCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHH
Q ss_conf 84353223440234630211347536417---------862034313426999999998629985078747989999998
Q gi|254780170|r 116 LAFRPITYFDGQGFIMHKKKGISSVSQLS---------GASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAY 186 (342)
Q Consensus 116 v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~---------G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al 186 (342)
++|+.|||..++.++|++++.+....+++ +.++++..|++++.++.+.+...........+++.++++++|
T Consensus 123 vdFs~Py~~~~~~ilv~k~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l 202 (284)
T 2a5s_A 123 VDFSVPFVETGISVMVSRGTQVTGLSDKKFQRPHDYSPPFRFGTVPNGSTERNIRNNYPYMHQYMTRFNQRGVEDALVSL 202 (284)
T ss_dssp EEECCCCEEECEEEEEETTCCCCSTTSHHHHSGGGSSSCCCEECCTTSHHHHHHHTTCHHHHHHHGGGCCSSHHHHHHHH
T ss_pred CCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHH
T ss_conf 82777624676778986798666635653267033156618999837549999997655431267982489999999999
Q ss_pred HCCCEEEEEECCHHHHHHHHHCCCCHHHCCC--CCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7396029982504799999836780010025--6444237101000277757999988774433112123
Q gi|254780170|r 187 RAHRCDAYTGDISALYALKLTNDRPSEHVIL--PDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEEL 254 (342)
Q Consensus 187 ~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il--~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~ 254 (342)
.+|++||++.|.+.+.....+.+. .+..++ +..++.+++|+++++|++ |.+.++..+..|.+-.++
T Consensus 203 ~~G~vDa~i~d~~~l~~~~~~~~~-~~~~~v~~~~~~~~~~~gia~~k~s~-l~~~in~ai~~l~~~G~~ 270 (284)
T 2a5s_A 203 KTGKLDAFIYDAAVLNYKAGRDEG-CKLVTIGSGYIFATTGYGIALQKGSP-WKRQIDLALLQFVGDGEM 270 (284)
T ss_dssp HTTSCSEEEEEHHHHHHHHHTCTT-SCEEEEECCCGGGCEEECCEEETTCT-THHHHHHHHHHHHHHTHH
T ss_pred HCCCCCEEECCHHHHHHHHHHCCC-CCEEEECCCCCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHCCHH
T ss_conf 869987896459999999985899-85899358876576069999818839-999999999999969899