HHsearch results for GI: 254780170 and protein with PDBid: 2a5s_A

>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B*
Probab=99.95  E-value=2.3e-28  Score=198.61  Aligned_cols=201  Identities=12%  Similarity=0.107  Sum_probs=156.5

Q ss_pred             CEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEC-----------CCCCCHHHHHCCCEEEEEECCCCCCCCHHCCC
Q ss_conf             3068898988015099999999996798220259981-----------43100267743962799812432532011027
Q gi|254780170|r   47 FAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPL-----------NAKERFLALQSKQIDILSRNTDWTLLREISLG  115 (342)
Q Consensus        47 fs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~-----------~~~~rf~aL~sG~vDil~~~~T~T~~Rd~~~~  115 (342)
                      ....+.++.++||+|||+++||+.++-   ++||+.+           +|++.+.+|.+|++|++++++|+|++|+  ..
T Consensus        48 ~~~~~~~~~~~G~~iDl~~~ia~~lg~---~~e~~~v~d~~~g~~~~~~w~~li~~l~~g~~Di~i~~~tit~eR~--~~  122 (284)
T 2a5s_A           48 NEGMNVKKCCKGFCIDILKKLSRTVKF---TYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERS--EV  122 (284)
T ss_dssp             SCEEEEEEEEESHHHHHHHHHHHHHTC---CEEEEECCSSSSCCEETTEECHHHHHHHTTSCSEECSSCBCCHHHH--TT
T ss_pred             CCCCCCCCCEEEEHHHHHHHHHHHHCC---CEEEEEECCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCHHHH--HH
T ss_conf             677678876389729999999998499---7799993587657657888899997663885899995880799999--54


Q ss_pred             CCCCCCCCCCCEEEEEECCCCCCCHHHHC---------CCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHH
Q ss_conf             84353223440234630211347536417---------862034313426999999998629985078747989999998
Q gi|254780170|r  116 LAFRPITYFDGQGFIMHKKKGISSVSQLS---------GASICVQAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAY  186 (342)
Q Consensus       116 v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~---------G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al  186 (342)
                      ++|+.|||..++.++|++++.+....+++         +.++++..|++++.++.+.+...........+++.++++++|
T Consensus       123 vdFs~Py~~~~~~ilv~k~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l  202 (284)
T 2a5s_A          123 VDFSVPFVETGISVMVSRGTQVTGLSDKKFQRPHDYSPPFRFGTVPNGSTERNIRNNYPYMHQYMTRFNQRGVEDALVSL  202 (284)
T ss_dssp             EEECCCCEEECEEEEEETTCCCCSTTSHHHHSGGGSSSCCCEECCTTSHHHHHHHTTCHHHHHHHGGGCCSSHHHHHHHH
T ss_pred             CCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHH
T ss_conf             82777624676778986798666635653267033156618999837549999997655431267982489999999999


Q ss_pred             HCCCEEEEEECCHHHHHHHHHCCCCHHHCCC--CCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7396029982504799999836780010025--6444237101000277757999988774433112123
Q gi|254780170|r  187 RAHRCDAYTGDISALYALKLTNDRPSEHVIL--PDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEEL  254 (342)
Q Consensus       187 ~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il--~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~  254 (342)
                      .+|++||++.|.+.+.....+.+. .+..++  +..++.+++|+++++|++ |.+.++..+..|.+-.++
T Consensus       203 ~~G~vDa~i~d~~~l~~~~~~~~~-~~~~~v~~~~~~~~~~~gia~~k~s~-l~~~in~ai~~l~~~G~~  270 (284)
T 2a5s_A          203 KTGKLDAFIYDAAVLNYKAGRDEG-CKLVTIGSGYIFATTGYGIALQKGSP-WKRQIDLALLQFVGDGEM  270 (284)
T ss_dssp             HTTSCSEEEEEHHHHHHHHHTCTT-SCEEEEECCCGGGCEEECCEEETTCT-THHHHHHHHHHHHHHTHH
T ss_pred             HCCCCCEEECCHHHHHHHHHHCCC-CCEEEECCCCCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHCCHH
T ss_conf             869987896459999999985899-85899358876576069999818839-999999999999969899