HHsearch results for GI: 254780170 and protein with PDBid: 2f5x_A
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=97.75 E-value=0.0019 Score=40.69 Aligned_cols=233 Identities=12% Similarity=0.070 Sum_probs=120.7
Q ss_pred EEHHHHHHHHHHHH---CCCCCEEEEEECCCCCC-HHHHHCCCEE---EEEECC-CCC-CC--CHH-CCC-CCCCCCC--
Q ss_conf 15099999999996---79822025998143100-2677439627---998124-325-32--011-027-8435322--
Q gi|254780170|r 58 GFDVDFCRALSSAI---FDDPSKIQYLPLNAKER-FLALQSKQID---ILSRNT-DWT-LL--REI-SLG-LAFRPIT-- 122 (342)
Q Consensus 58 GfDVDl~raiAaal---~gd~~kVe~v~~~~~~r-f~aL~sG~vD---il~~~~-T~T-~~--Rd~-~~~-v~Fs~~~-- 122 (342)
|.|+ ++|.+|..+ +|.+..|+.+|-..... ...+...+-| +++.+. ..+ .. +.. ... -+|.+.-
T Consensus 30 g~D~-~aR~~a~~l~k~lg~~v~V~N~pGagG~~g~~~~~~~~~Dg~t~~~~~~~~~~~~~l~~~~~~~~~~df~~i~~~ 108 (312)
T 2f5x_A 30 PTDN-VARSLAESMRPTLGETVVVENKGGAGGTIGTTQVARAQPDGYSILLMHAGFSTAPSLYKNPGYEPYTSFEPIGLV 108 (312)
T ss_dssp HHHH-HHHHHHHHHHHHHSSCEEEEECCCGGGHHHHHHHHTSCSSSSEEEEEETHHHHGGGTCSCCSSCTTTSEEEEEEE
T ss_pred HHHH-HHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCE
T ss_conf 8999-999999999998699879997898215999999995699998156521553445200157888848863300100
Q ss_pred CCCCEEEEEECCCCCCCHHHHC------C--CCEEE-EECCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCEEE
Q ss_conf 3440234630211347536417------8--62034-3134269999999986299850787479899999987396029
Q gi|254780170|r 123 YFDGQGFIMHKKKGISSVSQLS------G--ASICV-QAGTTTELTLADYFKAHNMKYHPIVFERVEEIDAAYRAHRCDA 193 (342)
Q Consensus 123 ~~dgq~~lVrk~~~i~s~~dL~------G--~~I~v-~~GTT~e~~l~~~~~~~~~~~~~v~~~~~~~a~~al~~Gr~DA 193 (342)
..+...++|++++++++++||- . .+++. -.|+........+.+..+.+++.|.|++..+++.++..|++|+
T Consensus 109 ~~~~~~~~v~~~s~~~t~~dli~~ak~~p~~v~~g~~g~gs~~~~~~~~~~~~~G~~~~~V~y~G~~~~~~al~~G~vd~ 188 (312)
T 2f5x_A 109 VDVPMTIIARGDFPPNNIKELAEYVKKNADKISLANAGIGAASHLCGTMLVEALGVNLLTIPYKGTAPAMNDLLGKQVDL 188 (312)
T ss_dssp EEEEEEEEECTTCSCCSHHHHHHHHHHHGGGCEEEESSTTSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHTTSSCE
T ss_pred ECCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCCCCC
T ss_conf 04756898679884033789999873387761464378994889999899986398444135677177777753683131
Q ss_pred EEECCHHHHHHHHHCC-------CCHHHCCCCCC-----------CCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9825047999998367-------80010025644-----------42371010002777579999887744331121233
Q gi|254780170|r 194 YTGDISALYALKLTND-------RPSEHVILPDI-----------ISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEELG 255 (342)
Q Consensus 194 ~~~D~s~La~~~~~~~-------~p~~~~il~e~-----------iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee~g 255 (342)
.+...+........-. .+.....+|+. ...-..++++++|-++ ++|.|...++-
T Consensus 189 ~~~~~~~~~~~~~~g~l~~La~~~~~r~~~~pdvPT~~E~G~~~~~~~~~~g~~ap~gtp~--~~v~~l~~a~~------ 260 (312)
T 2f5x_A 189 MCDQTTNTTQQITSGKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTPK--PVVDKLVKSLQ------ 260 (312)
T ss_dssp EEEEHHHHHHHHHTTSSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCCH--HHHHHHHHHHH------
T ss_pred CCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHCCCCCEEEEEEEEECCCCCCH--HHHHHHHHHHH------
T ss_conf 2357300144553467549998277655436899980652788750355202532677999--99999999999------
Q ss_pred CCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCC-HHHHHHHHHHCCCHHHHHH
Q ss_conf 0152089886226717788762358876503337998-6799999997186999878
Q gi|254780170|r 256 ITQKNINQVSKDTTNPDVQRFLGIDKSSNIGEALGLT-KDWTYRIIRHMGNYGEMFD 311 (342)
Q Consensus 256 it~~nv~~~~~~s~~p~i~r~lg~~~~~~~g~~lgl~-~~~~~~~i~~vGNYgei~~ 311 (342)
++ ..||+.+..|--.+ -+.- .-.++ .++...+-.+.-.|+++..
T Consensus 261 -------~~---~~~pe~~~~~~~~g-~~~~-~~~~~~~~~~~~i~~~~~~~~~lik 305 (312)
T 2f5x_A 261 -------AG---LADPKFQERMKQLG-AEVL-TNEANPEALQAKVKQQVPQWAELFK 305 (312)
T ss_dssp -------HH---HTCHHHHHHHHHTT-CEEC-GGGCSHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HH---HCCHHHHHHHHHCC-CCCC-CCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf -------99---73999999999769-9614-7889999999999999999999999