HHsearch results for GI: 254780170 and protein with PDBid: 2q88_A
>2q88_A EHUB, putative ABC transporter amino acid-binding protein; substrate-binding protein, compatible solues, osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=100.00 E-value=2.8e-33 Score=229.77 Aligned_cols=222 Identities=17% Similarity=0.167 Sum_probs=179.9
Q ss_pred CCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCEEEEEE
Q ss_conf 42168999857949998717898830688989880150999999999967982202599814310026774396279981
Q gi|254780170|r 23 NASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDDPSKIQYLPLNAKERFLALQSKQIDILSR 102 (342)
Q Consensus 23 ~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd~~kVe~v~~~~~~rf~aL~sG~vDil~~ 102 (342)
..++|++|+++|+||||+ .++|||+|.|++|+++||++|+++++|+.++.. .+.+...+|..++.+|++|++|++++
T Consensus 2 ~~~~l~~i~~~g~lrV~~-~~~pP~~~~~~~G~~~G~~~dl~~~ia~~lg~~--~~~~~~~~~~~~~~~l~~g~~D~~~~ 78 (257)
T 2q88_A 2 DENKLEELKEQGFARIAI-ANEPPFTAVGADGKVSGAAPDVAREIFKRLGVA--DVVASISEYGAMIPGLQAGRHDAITA 78 (257)
T ss_dssp CTTHHHHHHHHTEEEEEE-CCCTTTCEECTTCCEESHHHHHHHHHHHHTTCC--EEEEEECCGGGHHHHHHTTSCSEECS
T ss_pred CCCHHHHHHCCCEEEEEE-CCCCCCEEECCCCCEEEHHHHHHHHHHHHHCCC--EEEEECCCHHHHHHHHHCCCCCEEEE
T ss_conf 645899998299699998-689994479999988878999999999993997--79984699999999997599884776
Q ss_pred CCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCC--C---CCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 2432532011027843532234402346302113--4---7536417862034313426999999998629985078747
Q gi|254780170|r 103 NTDWTLLREISLGLAFRPITYFDGQGFIMHKKKG--I---SSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPIVFE 177 (342)
Q Consensus 103 ~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~--i---~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v~~~ 177 (342)
++++|++|. ..++|+.||+..++.+++++++. + .++.++.|++|++..|++.+..+. .......+++.|+
T Consensus 79 ~~~~t~~r~--~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~g~~~~~~~~---~~~~~~~~i~~~~ 153 (257)
T 2q88_A 79 GLFMKPERC--AAVAYSQPILCDAEAFALKKGNPLGLKSYKDIADNPDAKIGAPGGGTEEKLAL---EAGVPRDRVIVVP 153 (257)
T ss_dssp CCBCCHHHH--TTSEECSCCCEECEEEEEETTCTTCCCBHHHHHHCTTCCEEECTTSHHHHHHH---HTTCCGGGEEECS
T ss_pred EEECCHHHC--CHHHCCCCEECCCCEEEEECCCCCCCCCHHHHHHCCCCEEEEECCCHHHHHHH---HCCCCCCCEEEEH
T ss_conf 434154324--31005866112673146753641133313345414785699835856999999---8189866223200
Q ss_pred CHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCC--CCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9899999987396029982504799999836780010025644--423710100027775799998877443311212
Q gi|254780170|r 178 RVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDI--ISKSPLAPAIIQGDTEWYNIVSWTHYAMVTAEE 253 (342)
Q Consensus 178 ~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~--iskEPlg~avr~gD~~w~d~V~W~~~ali~Aee 253 (342)
+.++++.+|.+||+|+++.|...+.........++ ..+.... ....+++++++++|+++.+.++..+..|..-.+
T Consensus 154 ~~~~~~~~l~~GrvD~~v~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~i~~~k~~~~L~~~in~~l~~~~~~G~ 230 (257)
T 2q88_A 154 DGQSGLKMLQDGRIDVYSLPVLSINDLVSKANDPN-VEVLAPVEGAPVYCDGAAFRKGDEALRDAFDVELAKLKESGE 230 (257)
T ss_dssp SHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCCTT-EEEECSCBTCCCEEBCCEECGGGHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCC-EEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCH
T ss_conf 16788899876964799965999999998479998-699615667763116899889999999999999999996949