HHsearch results for GI: 254780170 and protein with PDBid: 2vha_A

>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=100.00  E-value=0  Score=313.77  Aligned_cols=231  Identities=19%  Similarity=0.267  Sum_probs=214.6

Q ss_pred             HCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCC----CCEEEEEECCCCCCHHHHHC
Q ss_conf             01244216899985794999871789883068898988015099999999996798----22025998143100267743
Q gi|254780170|r   19 SFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDD----PSKIQYLPLNAKERFLALQS   94 (342)
Q Consensus        19 ~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd----~~kVe~v~~~~~~rf~aL~s   94 (342)
                      ++++++++|++|+++|+|+||++.++|||+|.|++|+++||+|||+++||+.++.+    ..+|+|++++|..++.+|++
T Consensus         2 ~~~aa~~~l~~i~~~g~l~Vg~~~~~~P~~~~d~~G~~~G~~vDl~~~ia~~l~~~l~~~~~~v~~~~~~~~~~~~~L~~   81 (287)
T 2vha_A            2 AAPAAGSTLDKIAKNGVIVVGHRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLLQN   81 (287)
T ss_dssp             -CCCTTSHHHHHHHHTEEEEEECSEETTTEEECSSSCEESHHHHHHHHHHHHHHHHTTCTTCEEEEEECCTTTHHHHHHT
T ss_pred             CCCCCCCHHHHHHHCCEEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHC
T ss_conf             86655210999970998999986898893689999988886699999999997477377870699998799999999986


Q ss_pred             CCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEE
Q ss_conf             96279981243253201102784353223440234630211347536417862034313426999999998629985078
Q gi|254780170|r   95 KQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPI  174 (342)
Q Consensus        95 G~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v  174 (342)
                      |++|++++++++|.+|+  ..+.|+.||++.++++++|+++++++++||+|++|||..||+++..+.+++...+..++++
T Consensus        82 G~~Di~~~~~~~t~~R~--~~~~fs~p~~~~~~~l~~~k~~~i~~~~dL~g~~v~v~~gs~~~~~l~~~~~~~~~~~~iv  159 (287)
T 2vha_A           82 GTFDFECGSTTNNVERQ--KQAAFSDTIFVVGTRLLTKKGGDIKDFADLKGKAVVVTSGTTSEVLLNKLNEEQKMNMRII  159 (287)
T ss_dssp             TSCSEECSSCBCCHHHH--TTCEEEEEEEEEEEEEEEETTSSCCSGGGGTTCEEEEETTSHHHHHHHHHHHHTTCCCEEE
T ss_pred             CCCCEEECCCCCCHHHH--HHCCCCCCCCCCCCEEEEECCCCCCCHHHCCCCCEEECCCCHHHHHHHHHHHHHCCCCCEE
T ss_conf             99643411344664565--4324554300047257775489878987808981221378669999999888737896346


Q ss_pred             EECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             74798999999873960299825047999998367800100256444237101000277757999988774433112
Q gi|254780170|r  175 VFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTA  251 (342)
Q Consensus       175 ~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~A  251 (342)
                      .|++..++++++.+||||+++.|.+.+.........++.+.++++.++++|++++|+++|++|.+.++..+..|.+-
T Consensus       160 ~~~~~~~~~~~l~~grvD~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~av~k~~~~L~~~in~~l~~l~~~  236 (287)
T 2vha_A          160 SAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWDIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTS  236 (287)
T ss_dssp             EESSHHHHHHHHHTTSCSEEEEEHHHHHHHHTTSSSGGGEEEESCCSCEEEEEEEECTTCHHHHHHHHHHHHHHHHT
T ss_pred             ECCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf             52217899999986994099961499999999657888679937877763189999489999999999999999978