HHsearch results for GI: 254780170 and protein with PDBid: 2vha_A
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=100.00 E-value=0 Score=313.77 Aligned_cols=231 Identities=19% Similarity=0.267 Sum_probs=214.6
Q ss_pred HCCCCCHHHHHHHHCCEEEEEEECCCCCCEEECCCCCEEEEHHHHHHHHHHHHCCC----CCEEEEEECCCCCCHHHHHC
Q ss_conf 01244216899985794999871789883068898988015099999999996798----22025998143100267743
Q gi|254780170|r 19 SFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKGFDVDFCRALSSAIFDD----PSKIQYLPLNAKERFLALQS 94 (342)
Q Consensus 19 ~~aa~a~tLd~Vk~rG~L~vGv~~~~ppfs~~d~~G~~~GfDVDl~raiAaal~gd----~~kVe~v~~~~~~rf~aL~s 94 (342)
++++++++|++|+++|+|+||++.++|||+|.|++|+++||+|||+++||+.++.+ ..+|+|++++|..++.+|++
T Consensus 2 ~~~aa~~~l~~i~~~g~l~Vg~~~~~~P~~~~d~~G~~~G~~vDl~~~ia~~l~~~l~~~~~~v~~~~~~~~~~~~~L~~ 81 (287)
T 2vha_A 2 AAPAAGSTLDKIAKNGVIVVGHRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLLQN 81 (287)
T ss_dssp -CCCTTSHHHHHHHHTEEEEEECSEETTTEEECSSSCEESHHHHHHHHHHHHHHHHTTCTTCEEEEEECCTTTHHHHHHT
T ss_pred CCCCCCCHHHHHHHCCEEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHC
T ss_conf 86655210999970998999986898893689999988886699999999997477377870699998799999999986
Q ss_pred CCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEE
Q ss_conf 96279981243253201102784353223440234630211347536417862034313426999999998629985078
Q gi|254780170|r 95 KQIDILSRNTDWTLLREISLGLAFRPITYFDGQGFIMHKKKGISSVSQLSGASICVQAGTTTELTLADYFKAHNMKYHPI 174 (342)
Q Consensus 95 G~vDil~~~~T~T~~Rd~~~~v~Fs~~~~~dgq~~lVrk~~~i~s~~dL~G~~I~v~~GTT~e~~l~~~~~~~~~~~~~v 174 (342)
|++|++++++++|.+|+ ..+.|+.||++.++++++|+++++++++||+|++|||..||+++..+.+++...+..++++
T Consensus 82 G~~Di~~~~~~~t~~R~--~~~~fs~p~~~~~~~l~~~k~~~i~~~~dL~g~~v~v~~gs~~~~~l~~~~~~~~~~~~iv 159 (287)
T 2vha_A 82 GTFDFECGSTTNNVERQ--KQAAFSDTIFVVGTRLLTKKGGDIKDFADLKGKAVVVTSGTTSEVLLNKLNEEQKMNMRII 159 (287)
T ss_dssp TSCSEECSSCBCCHHHH--TTCEEEEEEEEEEEEEEEETTSSCCSGGGGTTCEEEEETTSHHHHHHHHHHHHTTCCCEEE
T ss_pred CCCCEEECCCCCCHHHH--HHCCCCCCCCCCCCEEEEECCCCCCCHHHCCCCCEEECCCCHHHHHHHHHHHHHCCCCCEE
T ss_conf 99643411344664565--4324554300047257775489878987808981221378669999999888737896346
Q ss_pred EECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 74798999999873960299825047999998367800100256444237101000277757999988774433112
Q gi|254780170|r 175 VFERVEEIDAAYRAHRCDAYTGDISALYALKLTNDRPSEHVILPDIISKSPLAPAIIQGDTEWYNIVSWTHYAMVTA 251 (342)
Q Consensus 175 ~~~~~~~a~~al~~Gr~DA~~~D~s~La~~~~~~~~p~~~~il~e~iskEPlg~avr~gD~~w~d~V~W~~~ali~A 251 (342)
.|++..++++++.+||||+++.|.+.+.........++.+.++++.++++|++++|+++|++|.+.++..+..|.+-
T Consensus 160 ~~~~~~~~~~~l~~grvD~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~av~k~~~~L~~~in~~l~~l~~~ 236 (287)
T 2vha_A 160 SAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWDIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTS 236 (287)
T ss_dssp EESSHHHHHHHHHTTSCSEEEEEHHHHHHHHTTSSSGGGEEEESCCSCEEEEEEEECTTCHHHHHHHHHHHHHHHHT
T ss_pred ECCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf 52217899999986994099961499999999657888679937877763189999489999999999999999978